Query psy1603
Match_columns 175
No_of_seqs 83 out of 85
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 19:04:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ua0_A Fibroin heavy chain; th 15.2 34 0.0011 26.6 0.0 16 3-18 11-26 (134)
2 1fjk_A Cardiac phospholamban; 10.5 1.6E+02 0.0056 19.2 2.2 11 5-15 34-45 (52)
3 3b4n_A Endo-pectate lyase; pec 7.8 85 0.0029 27.9 0.0 13 3-15 1-13 (344)
4 1jdm_A Sarcolipin; helix, memb 6.4 3E+02 0.01 16.3 1.9 11 5-15 11-22 (31)
5 4av2_M PILP protein, type IV p 6.2 1.1E+02 0.0039 24.1 0.0 19 1-19 1-19 (181)
6 4a2l_A BT_4663, two-component 6.0 1.2E+02 0.0041 27.4 0.0 13 1-13 1-13 (795)
7 1jqg_A Carboxypeptidase A; Pro 4.7 1.6E+02 0.0055 25.8 0.0 14 1-14 1-14 (433)
8 4ank_A Transthyretin; hormone 4.7 1.6E+02 0.0056 22.7 0.0 9 1-9 1-9 (147)
9 1yod_A Water-solublized phosph 4.3 5.3E+02 0.018 15.1 2.1 8 7-14 16-23 (30)
10 3bqu_C 3H6 FAB light chain; be 2.9 2.9E+02 0.01 19.9 0.0 19 1-19 1-19 (233)
No 1
>3ua0_A Fibroin heavy chain; the double-layered-sheets, fibroin folding initiation, prote; 3.00A {Bombyx mori}
Probab=15.23 E-value=34 Score=26.64 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhc
Q psy1603 3 MFQLALLTCLLVAVQA 18 (175)
Q Consensus 3 mfK~vv~~~~laaA~A 18 (175)
.-.||||||+|--+.|
T Consensus 11 ~~~~VILCCALQYvaa 26 (134)
T 3ua0_A 11 VKTFVILCCALQYVAY 26 (134)
T ss_dssp ----------------
T ss_pred ehhhhhhhHHHHHHHh
Confidence 3357889898875333
No 2
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=10.49 E-value=1.6e+02 Score=19.17 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=6.3
Q ss_pred HH-HHHHHHHHH
Q psy1603 5 QL-ALLTCLLVA 15 (175)
Q Consensus 5 K~-vv~~~~laa 15 (175)
.| +++.|+|..
T Consensus 34 nfclilicllli 45 (52)
T 1fjk_A 34 NFCLILIFLLLI 45 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 44 466666654
No 3
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A
Probab=7.79 E-value=85 Score=27.87 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHH
Q psy1603 3 MFQLALLTCLLVA 15 (175)
Q Consensus 3 mfK~vv~~~~laa 15 (175)
|||+|+-||.|..
T Consensus 1 ~~~~~~~~~~~~~ 13 (344)
T 3b4n_A 1 MFKYVIPLCALTL 13 (344)
T ss_dssp -------------
T ss_pred Cceeehhhhhhhh
Confidence 8999998897765
No 4
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=6.44 E-value=3e+02 Score=16.30 Aligned_cols=11 Identities=9% Similarity=0.374 Sum_probs=6.2
Q ss_pred HH-HHHHHHHHH
Q psy1603 5 QL-ALLTCLLVA 15 (175)
Q Consensus 5 K~-vv~~~~laa 15 (175)
.| +++.|+|..
T Consensus 11 NFt~vLI~vlLi 22 (31)
T 1jdm_A 11 NFTIVLITVILM 22 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 45 566666654
No 5
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=6.21 E-value=1.1e+02 Score=24.15 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHhcC
Q psy1603 1 MQMFQLALLTCLLVAVQAG 19 (175)
Q Consensus 1 ~~mfK~vv~~~~laaA~AG 19 (175)
|..|-+++++++|++|.++
T Consensus 1 Mk~~~ll~~~l~LsgC~~~ 19 (181)
T 4av2_M 1 MKHYALLISFLALSACSQG 19 (181)
T ss_dssp -------------------
T ss_pred CchHHHHHHHHhheeeCCC
Confidence 5566666665666667655
No 6
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=5.99 E-value=1.2e+02 Score=27.35 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHH
Q psy1603 1 MQMFQLALLTCLL 13 (175)
Q Consensus 1 ~~mfK~vv~~~~l 13 (175)
|.++|.++++|++
T Consensus 1 ~~~~~~~~~~~~~ 13 (795)
T 4a2l_A 1 MSKLKKIVIYLFF 13 (795)
T ss_dssp -------------
T ss_pred ChhhHHHHHHHHH
Confidence 6667664433333
No 7
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa armigera} SCOP: c.56.5.1 d.58.3.1
Probab=4.70 E-value=1.6e+02 Score=25.77 Aligned_cols=14 Identities=21% Similarity=0.088 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHH
Q psy1603 1 MQMFQLALLTCLLV 14 (175)
Q Consensus 1 ~~mfK~vv~~~~la 14 (175)
|.|+++++|+++++
T Consensus 1 m~~~~~~~~~~~~~ 14 (433)
T 1jqg_A 1 MKYLFIFCLFVAGV 14 (433)
T ss_dssp --------------
T ss_pred CccHHHHHHHHHHH
Confidence 77877766655444
No 8
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=4.67 E-value=1.6e+02 Score=22.72 Aligned_cols=9 Identities=44% Similarity=0.552 Sum_probs=0.0
Q ss_pred ChhhHHHHH
Q psy1603 1 MQMFQLALL 9 (175)
Q Consensus 1 ~~mfK~vv~ 9 (175)
|+.+|++++
T Consensus 1 m~~~~~~l~ 9 (147)
T 4ank_A 1 MASHRLLLL 9 (147)
T ss_dssp ---------
T ss_pred CchHHHHHH
Confidence 777777433
No 9
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=4.32 E-value=5.3e+02 Score=15.07 Aligned_cols=8 Identities=13% Similarity=0.090 Sum_probs=4.4
Q ss_pred HHHHHHHH
Q psy1603 7 ALLTCLLV 14 (175)
Q Consensus 7 vv~~~~la 14 (175)
+++.|++.
T Consensus 16 LilICllL 23 (30)
T 1yod_A 16 LREICQEL 23 (30)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45556654
No 10
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=2.90 E-value=2.9e+02 Score=19.87 Aligned_cols=19 Identities=47% Similarity=0.655 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHhcC
Q psy1603 1 MQMFQLALLTCLLVAVQAG 19 (175)
Q Consensus 1 ~~mfK~vv~~~~laaA~AG 19 (175)
|.|.-+++|+++|...-.|
T Consensus 1 M~m~~~~~ll~~~~l~~~~ 19 (233)
T 3bqu_C 1 MTMFSLALLLSLLLLCVSD 19 (233)
T ss_dssp -------------------
T ss_pred CcchHHHHHHHHHHHHhcc
Done!