Query psy1603
Match_columns 175
No_of_seqs 83 out of 85
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 19:05:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1603.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1603hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90n_ f.23.27.1 (N:) PetN su 2.7 2.5E+02 0.018 15.1 1.0 6 1-6 14-19 (31)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 2.6 2.1E+02 0.015 15.9 0.5 7 165-171 26-32 (34)
3 d1ppjd2 f.23.11.1 (D:196-241) 2.5 4.3E+02 0.031 15.1 2.0 11 4-14 11-21 (46)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 2.0 6E+02 0.044 13.3 2.1 8 7-14 8-15 (30)
5 d1eaqa_ b.2.5.6 (A:) Acute mye 1.8 5.5E+02 0.04 17.6 2.1 14 47-60 104-117 (124)
6 d1zata2 d.335.1.1 (A:217-338) 1.7 2.8E+02 0.021 18.6 0.2 6 170-175 81-86 (122)
7 d1w98b2 a.74.1.1 (B:88-227) G1 1.5 7.9E+02 0.057 15.7 2.4 16 2-17 84-99 (140)
8 d1nkda_ a.30.1.1 (A:) ROP prot 1.5 4.1E+02 0.03 16.2 0.7 6 2-7 10-15 (59)
9 d1djaa_ e.3.1.1 (A:) beta-Lact 1.3 6.9E+02 0.05 17.0 1.8 17 3-19 41-57 (258)
10 d2fc6a1 g.66.1.1 (A:8-44) Targ 1.3 3.4E+02 0.025 15.2 -0.1 5 171-175 20-24 (37)
No 1
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.68 E-value=2.5e+02 Score=15.11 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=3.2
Q ss_pred ChhhHH
Q psy1603 1 MQMFQL 6 (175)
Q Consensus 1 ~~mfK~ 6 (175)
|.||.|
T Consensus 14 ~atfsf 19 (31)
T d1q90n_ 14 CVMFSF 19 (31)
T ss_dssp HHHHHH
T ss_pred HHhhee
Confidence 455555
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.56 E-value=2.1e+02 Score=15.88 Aligned_cols=7 Identities=29% Similarity=0.795 Sum_probs=3.4
Q ss_pred eccCCCc
Q psy1603 165 DFDGYGV 171 (175)
Q Consensus 165 s~~g~g~ 171 (175)
+|+|+|+
T Consensus 26 sYsGlGS 32 (34)
T d2axtj1 26 AYAGLGS 32 (34)
T ss_dssp TTTSTTS
T ss_pred eeccccc
Confidence 4455554
No 3
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.47 E-value=4.3e+02 Score=15.05 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=5.7
Q ss_pred hHHHHHHHHHH
Q psy1603 4 FQLALLTCLLV 14 (175)
Q Consensus 4 fK~vv~~~~la 14 (175)
||.++++.+|.
T Consensus 11 ~Kv~~~l~~l~ 21 (46)
T d1ppjd2 11 LKMLLMMGLLL 21 (46)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36655555544
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.02 E-value=6e+02 Score=13.27 Aligned_cols=8 Identities=13% Similarity=0.845 Sum_probs=4.5
Q ss_pred HHHHHHHH
Q psy1603 7 ALLTCLLV 14 (175)
Q Consensus 7 vv~~~~la 14 (175)
++|.|+++
T Consensus 8 ~ifac~i~ 15 (30)
T d2axtt1 8 FIFACIIA 15 (30)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45666654
No 5
>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.82 E-value=5.5e+02 Score=17.64 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=9.9
Q ss_pred cCCcceeeeecccc
Q psy1603 47 LDGNSVHSVYSKAV 60 (175)
Q Consensus 47 ~~~~a~VstysKaI 60 (175)
+++--+|.+|.|+|
T Consensus 104 ~t~PpqVAty~rAI 117 (124)
T d1eaqa_ 104 FTNPPQVATYHRAI 117 (124)
T ss_dssp CSSSCEEEECSSCB
T ss_pred ecCCchheeheeeE
Confidence 34445888888887
No 6
>d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic domain {Enterococcus faecium [TaxId: 1352]}
Probab=1.70 E-value=2.8e+02 Score=18.57 Aligned_cols=6 Identities=17% Similarity=0.313 Sum_probs=2.8
Q ss_pred CccCCC
Q psy1603 170 GVHYAF 175 (175)
Q Consensus 170 g~~yg~ 175 (175)
|..|||
T Consensus 81 gG~YGW 86 (122)
T d1zata2 81 VGTYSW 86 (122)
T ss_dssp CCSSCE
T ss_pred CCCcce
Confidence 344555
No 7
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.51 E-value=7.9e+02 Score=15.69 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHh
Q psy1603 2 QMFQLALLTCLLVAVQ 17 (175)
Q Consensus 2 ~mfK~vv~~~~laaA~ 17 (175)
+.+|++-+.|++.++-
T Consensus 84 ~~lqL~a~acL~IAsK 99 (140)
T d1w98b2 84 TLLQLIGISSLFIAAK 99 (140)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3567887778877643
No 8
>d1nkda_ a.30.1.1 (A:) ROP protein {Escherichia coli [TaxId: 562]}
Probab=1.50 E-value=4.1e+02 Score=16.20 Aligned_cols=6 Identities=17% Similarity=0.301 Sum_probs=4.9
Q ss_pred hhhHHH
Q psy1603 2 QMFQLA 7 (175)
Q Consensus 2 ~mfK~v 7 (175)
||-|||
T Consensus 10 NMAkFI 15 (59)
T d1nkda_ 10 NMARFI 15 (59)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 788886
No 9
>d1djaa_ e.3.1.1 (A:) beta-Lactamase, class A {Staphylococcus aureus [TaxId: 1280]}
Probab=1.33 E-value=6.9e+02 Score=16.99 Aligned_cols=17 Identities=18% Similarity=-0.046 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHhcC
Q psy1603 3 MFQLALLTCLLVAVQAG 19 (175)
Q Consensus 3 mfK~vv~~~~laaA~AG 19 (175)
++|+.+++.+|=....|
T Consensus 41 ~~Kl~~a~~~l~~~~~~ 57 (258)
T d1djaa_ 41 TSHAINSAILLEQVPYN 57 (258)
T ss_dssp GHHHHHHHHHHTSSCGG
T ss_pred HHHHHHHHHHHHhcccc
Confidence 68887765555444444
No 10
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.27 E-value=3.4e+02 Score=15.17 Aligned_cols=5 Identities=20% Similarity=0.674 Sum_probs=0.0
Q ss_pred ccCCC
Q psy1603 171 VHYAF 175 (175)
Q Consensus 171 ~~yg~ 175 (175)
+.|||
T Consensus 20 sAyGW 24 (37)
T d2fc6a1 20 SAYGW 24 (37)
T ss_dssp HHTCC
T ss_pred hhccc
Done!