RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1603
(175 letters)
>gnl|CDD|220944 pfam11018, Cuticle_3, Pupal cuticle protein C1. Insect cuticles
are composite structures whose mechanical properties are
optimised for biological function. The major components
are the chitin filament system and the cuticular
proteins, and the cuticle's properties are determined
largely by the interactions between these two sets of
molecules. The proteins can be ordered by species.
Length = 164
Score = 45.4 bits (107), Expect = 2e-06
Identities = 64/161 (39%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 35 AVGSQSQSVVRSLDGNSVHSVYSKAVDTPFSSVRKYDSRVSNDAIAYAH----------- 83
AVGS Q+ VRS G S YSKAVDTP+SSVRK D+R+SN+A A+
Sbjct: 4 AVGSTHQNTVRSFGGLGTVSHYSKAVDTPYSSVRKSDTRISNNAYQPAYAKTAYAYAAPA 63
Query: 84 -----APVYHAPVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHPVAYSPVAY 138
APVY A Y+AP V A YAA KYA P A Y
Sbjct: 64 VYAAAAPVYAAHAYAAPAVHYAAAAHYAAPAYAKYAYAAPAVTAKAAYAAPAPVYKTAYA 123
Query: 139 HAPVSAGVAPYAVKAP----YSPAAVVSHVDFDGYGVHYAF 175
A + V A YSPAA VSH+ + G G HYA+
Sbjct: 124 AAAPAVYAHAAPVVATATVAYSPAAAVSHMSYAGLGAHYAW 164
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 41.1 bits (96), Expect = 2e-04
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 71 DSRVSNDAIAYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLK--YAAPYPYHAPVVKSIA 128
DS + + APV + V APVV+ V AAPVL + P AP
Sbjct: 1113 DSNIVKLSPLATQAPVIKSVVTQAPVVQVTISVA-PAAPVLPAVVSPPVVSAAPAQSVAT 1171
Query: 129 ----HPVAYSPVAYHAPVSAGVAPYAVKA 153
PVA P+A PV V A
Sbjct: 1172 AVAMAPVAEVPIA--VPVQQSVDYMPSVA 1198
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 31.9 bits (73), Expect = 0.18
Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 80 AYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHPVAYSPVAYH 139
H V +APV + +T + V + A + PVV+ A
Sbjct: 908 EVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHA--EPVVEPQDETADIEEAAET 965
Query: 140 APVSAGVAPYAVKAPYSPAAVVSHV 164
A V P V P +P
Sbjct: 966 AEVVV-AEPEVVAQPAAPVVAEVAA 989
Score = 27.3 bits (61), Expect = 4.7
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 3/76 (3%)
Query: 89 APVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHPVAYSPVAYHAPVSAGVAP 148
PV + V + +A V A PVV + P V P AP
Sbjct: 867 QPVVAEVPVAAAVEPVVSAPVVE--AVAEVVEEPVVVAEPQPEEVVVVETTHPE-VIAAP 923
Query: 149 YAVKAPYSPAAVVSHV 164
+ + V+
Sbjct: 924 VTEQPQVITESDVAVA 939
Score = 27.3 bits (61), Expect = 5.6
Identities = 25/127 (19%), Positives = 34/127 (26%), Gaps = 17/127 (13%)
Query: 60 VDTPFSSVRKYDSRVSNDAIAYAHAPVYHAPVY-SAPVVKSVAPVTYAAAPVLKYAAPYP 118
V + + D V+ + +A V A V A V+ A
Sbjct: 924 VTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPV 983
Query: 119 YHAPVVKSIAHPVAYSPVAYHAPVSAGV------APYAVKAP---YSP-AAVVSH----- 163
+ VA A V AP +AP Y P A S
Sbjct: 984 VAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAP-MTRAPAPEYVPEAPRHSDWQRPT 1042
Query: 164 VDFDGYG 170
F+G G
Sbjct: 1043 FAFEGKG 1049
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 30.6 bits (69), Expect = 0.38
Identities = 27/90 (30%), Positives = 32/90 (35%)
Query: 78 AIAYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHPVAYSPVA 137
A A V +AP +S AP AAA P AP A P A + A
Sbjct: 406 PAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPA 465
Query: 138 YHAPVSAGVAPYAVKAPYSPAAVVSHVDFD 167
P A A A +PAA + D D
Sbjct: 466 AAGPRPVAAAAAAAPARAAPAAAPAPADDD 495
Score = 28.3 bits (63), Expect = 2.5
Identities = 20/72 (27%), Positives = 24/72 (33%)
Query: 89 APVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHPVAYSPVAYHAPVSAGVAP 148
AP +AP + AP AAP AA A A +A SA
Sbjct: 386 APAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPG 445
Query: 149 YAVKAPYSPAAV 160
A +PAA
Sbjct: 446 GAPAPAPAPAAA 457
>gnl|CDD|222843 PHA02030, PHA02030, hypothetical protein.
Length = 336
Score = 29.9 bits (67), Expect = 0.66
Identities = 20/71 (28%), Positives = 25/71 (35%)
Query: 89 APVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHPVAYSPVAYHAPVSAGVAP 148
A + + AA V AA AP V + + V APV+A AP
Sbjct: 263 GSNLPAVPNVAADAGSAAAPAVPAAAAAVAQAAPSVPQVPNVAVLPDVPQVAPVAAPAAP 322
Query: 149 YAVKAPYSPAA 159
P PAA
Sbjct: 323 EVPAVPVVPAA 333
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 30.1 bits (67), Expect = 0.68
Identities = 25/129 (19%), Positives = 39/129 (30%), Gaps = 7/129 (5%)
Query: 38 SQSQSVVRSLDGNSVHSVYSKAVD--TPFSSVRKYDSRVSNDAIAYAHAPVYHAPVYS-A 94
++ V + + ++ V+ T V D + +A+ P A
Sbjct: 315 PITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIA 374
Query: 95 PVVKSVAPVTYAAAPVLKYAA----PYPYHAPVVKSIAHPVAYSPVAYHAPVSAGVAPYA 150
P + + A P ++Y P P A A P AP PY
Sbjct: 375 PAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYY 434
Query: 151 VKAPYSPAA 159
AP P A
Sbjct: 435 APAPEQPVA 443
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 29.5 bits (65), Expect = 0.98
Identities = 28/85 (32%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 75 SNDAIAYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHPVAYS 134
S A A A A A + P + AP AAAP A P AP K+ A P
Sbjct: 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAK-- 273
Query: 135 PVAYHAPVSAGVAPYAVKAPYSPAA 159
A P A P AP + AA
Sbjct: 274 --AAAPPAKAAAPPAKAAAPPAKAA 296
Score = 28.4 bits (62), Expect = 2.4
Identities = 28/85 (32%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 78 AIAYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHP---VAYS 134
A A A A A +AP + AP AA P A P AP K+ A P A
Sbjct: 226 AAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPP 285
Query: 135 PVAYHAPVSAGVAPYAVKAPYSPAA 159
A P A AP A + AA
Sbjct: 286 AKAAAPPAKAAAAPAKAAAAPAKAA 310
Score = 27.6 bits (60), Expect = 3.6
Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 78 AIAYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHPVAYSPV- 136
A A A A A + P + P AA P A P AP K+ A P +
Sbjct: 240 AAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAP 299
Query: 137 --AYHAPVSAGVAPYAVKAPYSPAA 159
A AP A AP AP + AA
Sbjct: 300 AKAAAAPAKAAAAPAKAAAPPAKAA 324
Score = 27.6 bits (60), Expect = 4.2
Identities = 28/79 (35%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 78 AIAYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHP--VAYSP 135
A A A A + P + AP AAAP AAP AP K+ A P A P
Sbjct: 275 AAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPP 334
Query: 136 V-AYHAPVSAGVAPYAVKA 153
A P A AP KA
Sbjct: 335 AKAAAPPAKAAAAPVGKKA 353
>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 155
Score = 28.6 bits (65), Expect = 1.3
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 72 SRVSNDAIAYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLKYAAP 116
SR + +A APV +AP + A AAAP A
Sbjct: 33 SRAAAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEA 77
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 28.9 bits (65), Expect = 1.7
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 82 AHAPVYHAPVYSAPVVKSVAPV---TYAAAPVLKYAAPYPYHAPVVKSIAHPVAYSPVAY 138
A P A + K+ A AAAPV + AA A + + P A A
Sbjct: 363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAP 422
Query: 139 HAPVSAGVAPYAVKAPYSPAAVVS 162
APV+A A AP + A V+
Sbjct: 423 PAPVAAPAAAAPAAAPAAAPAAVA 446
Score = 28.1 bits (63), Expect = 2.7
Identities = 23/88 (26%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 78 AIAYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHPVAYSPVA 137
A A A P +AP VA A AP AA A + +PVA
Sbjct: 372 AAAPAEKKTPARPEAAAPAAAPVAQAAAAPAP----AAAPAAAASAPAAPPAAAPPAPVA 427
Query: 138 YHAPVSAGVAPYAVKAPYSPAAVVSHVD 165
A + AP A A + A
Sbjct: 428 APAAAAPAAAPAAAPAAVALAPAPPAQA 455
Score = 27.0 bits (60), Expect = 5.9
Identities = 22/85 (25%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Query: 77 DAIAYAHAPVYHAPVYSAPVVKSVAPVTYAAAPVLKYAAPYPYH-APVVKSIAHPVAYSP 135
A A A AP + S AAAP AAP A + VA +P
Sbjct: 390 AAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449
Query: 136 VAYHAPVSAGVAPYAVKAPYSPAAV 160
VA AP A
Sbjct: 450 APPAQAAPETVAIPVRVAPEPAVAS 474
>gnl|CDD|235058 PRK02654, PRK02654, putative inner membrane protein translocase
component YidC; Provisional.
Length = 375
Score = 28.4 bits (64), Expect = 2.3
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 19 GDYPSVAYVTPSYAHSAVGSQSQSVVRSLDGNSVHSVYSKAVDTPFS---SVRKYDSRVS 75
G + V P VG + +++ +G + ++ ++ S V K + RV
Sbjct: 158 GVHFPVIASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEERVK 217
Query: 76 NDA 78
Sbjct: 218 VSE 220
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 28.4 bits (64), Expect = 2.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 1 MQMFQLALLTCLLVAVQAGDYPSVAYVTPSYAHSAV 36
M + L LL LL V+A +V + TP+Y+H +V
Sbjct: 3 MTIIILLLLLLLLSGVRAARILAV-FPTPAYSHHSV 37
>gnl|CDD|225109 COG2199, COG2199, c-di-GMP synthetase (diguanylate cyclase, GGDEF
domain) [Signal transduction mechanisms].
Length = 181
Score = 27.4 bits (61), Expect = 3.2
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 123 VVKSIAHPVAYSPVAYHAPVSAGVAPYAVKAPYSPAAVVSHVD 165
+ ++ P VS GVA Y ++ D
Sbjct: 122 IRAALEEPFFLGGEELRVTVSIGVALYPEDGSDDAELLLRRAD 164
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 27.7 bits (62), Expect = 3.6
Identities = 20/123 (16%), Positives = 30/123 (24%), Gaps = 3/123 (2%)
Query: 33 HSAVGSQSQSVVRSLDGNSVHSVYSKAVDTPFS--SVRKYDSRVSNDAIAYAHAPVYHAP 90
H+ +Q R + Y+ A A P
Sbjct: 73 HAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQP 132
Query: 91 VYSAPVVKSV-APVTYAAAPVLKYAAPYPYHAPVVKSIAHPVAYSPVAYHAPVSAGVAPY 149
Y + + PV+ AP + P A A PVA A + +
Sbjct: 133 AYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKP 192
Query: 150 AVK 152
K
Sbjct: 193 KRK 195
>gnl|CDD|225645 COG3103, COG3103, SH3 domain protein [Signal transduction
mechanisms].
Length = 205
Score = 27.0 bits (60), Expect = 4.6
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 1 MQMFQLALLTCLLVAVQAGD-YPSVAYVTPS---YAHSAVGSQSQSVVRSLDGNSVHSVY 56
M LLT LL++ A YV+ S G Q +V S+ +V
Sbjct: 1 MNKLIFILLTSLLLSAAAPATAEETRYVSDKLNTNVRSGPGDQY-RIVGSIKAGEKVTVL 59
Query: 57 SKAVDTPFSSVR 68
+T + +R
Sbjct: 60 GTDGNTGYYQIR 71
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 26.3 bits (58), Expect = 7.1
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 98 KSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHPVAYSPVAYHAPVSAGVAPYAVKAPYSP 157
K +AP+T A P + P +P P +P AP +A AP A P P
Sbjct: 77 KILAPLTPPAPP--EPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDP 134
>gnl|CDD|237381 PRK13419, PRK13419, F0F1 ATP synthase subunit A; Provisional.
Length = 342
Score = 26.6 bits (59), Expect = 8.5
Identities = 16/65 (24%), Positives = 20/65 (30%)
Query: 105 YAAAPVLKYAAPYPYHAPVVKSIAHPVAYSPVAYHAPVSAGVAPYAVKAPYSPAAVVSHV 164
AA AA +HA + A P A HA +A V+ H
Sbjct: 18 NDAAFASAEAAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHAEQAEGGHEEKAGDVIMHH 77
Query: 165 DFDGY 169
D Y
Sbjct: 78 ILDSY 82
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.129 0.382
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,682,858
Number of extensions: 753760
Number of successful extensions: 919
Number of sequences better than 10.0: 1
Number of HSP's gapped: 806
Number of HSP's successfully gapped: 74
Length of query: 175
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 85
Effective length of database: 6,945,742
Effective search space: 590388070
Effective search space used: 590388070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)