RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1603
         (175 letters)



>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus
           [TaxId: 11103]}
          Length = 530

 Score = 27.1 bits (60), Expect = 1.2
 Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 14/102 (13%)

Query: 85  PVYH-----------APVYSAPVVKSVAPVTYAAAPVLKYAAPYPYHAPVVKSIAHPVAY 133
           P Y            +  + A   +          P+ + A     H PV   + + + Y
Sbjct: 356 PEYDLELITSCSSNVSVAHDASGKRVYYLTRDPTTPLARAAWETARHTPVNSWLGNIIMY 415

Query: 134 SPVAYHAPVSAGVAPYAVKAPYSPAAVVSHVDFDGYGVHYAF 175
           +P          +  +      +   +   +D   YG  Y+ 
Sbjct: 416 AP---TLWARMILMTHFFSILLAQEQLEKALDCQIYGACYSI 454


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.129    0.382 

Gapped
Lambda     K      H
   0.267   0.0532    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 598,003
Number of extensions: 23426
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 5
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)