Query psy16032
Match_columns 243
No_of_seqs 257 out of 3583
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 19:08:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156|consensus 100.0 3E-27 6.5E-32 201.4 15.3 134 109-242 239-387 (489)
2 KOG0158|consensus 99.9 4E-25 8.7E-30 186.6 13.7 130 108-238 243-385 (499)
3 PLN02971 tryptophan N-hydroxyl 99.9 5.3E-25 1.2E-29 192.4 14.5 117 126-242 305-428 (543)
4 KOG0159|consensus 99.9 1.7E-24 3.8E-29 179.9 11.2 155 84-241 249-416 (519)
5 PLN03234 cytochrome P450 83B1; 99.9 5.8E-24 1.2E-28 184.5 15.0 116 127-242 266-389 (499)
6 PLN00168 Cytochrome P450; Prov 99.9 8.9E-24 1.9E-28 184.0 12.5 116 127-242 284-408 (519)
7 PLN03112 cytochrome P450 famil 99.9 2.2E-23 4.9E-28 181.4 14.5 116 127-242 275-397 (514)
8 PLN02394 trans-cinnamate 4-mon 99.9 2.3E-23 4.9E-28 180.9 14.0 115 126-242 274-394 (503)
9 PLN03195 fatty acid omega-hydr 99.9 1.9E-23 4.2E-28 181.8 13.4 116 127-242 272-413 (516)
10 PLN02290 cytokinin trans-hydro 99.9 2.8E-23 6.2E-28 180.8 13.6 115 127-242 293-415 (516)
11 PLN02966 cytochrome P450 83A1 99.9 3.2E-23 6.9E-28 179.9 13.7 117 126-242 266-392 (502)
12 PLN02687 flavonoid 3'-monooxyg 99.9 5.2E-23 1.1E-27 179.1 14.6 116 127-242 272-398 (517)
13 PLN00110 flavonoid 3',5'-hydro 99.9 6.6E-23 1.4E-27 177.8 14.0 116 127-242 268-390 (504)
14 PTZ00404 cytochrome P450; Prov 99.9 9E-23 2E-27 176.3 14.1 115 127-242 264-385 (482)
15 PLN02183 ferulate 5-hydroxylas 99.9 1.2E-22 2.7E-27 176.7 14.6 115 127-242 273-404 (516)
16 PLN02426 cytochrome P450, fami 99.9 2E-22 4.2E-27 174.5 14.6 126 110-242 255-395 (502)
17 KOG0157|consensus 99.9 1.8E-22 3.8E-27 174.4 14.0 131 107-241 240-392 (497)
18 PLN02169 fatty acid (omega-1)- 99.9 2.5E-22 5.4E-27 174.0 14.2 111 127-242 278-396 (500)
19 PLN03018 homomethionine N-hydr 99.9 4.4E-22 9.5E-27 173.4 15.1 117 126-242 292-415 (534)
20 PF00067 p450: Cytochrome P450 99.9 2.9E-22 6.4E-27 171.0 12.6 132 111-242 214-363 (463)
21 PLN02500 cytochrome P450 90B1 99.9 6E-22 1.3E-26 171.5 14.5 110 127-242 264-384 (490)
22 PLN02738 carotene beta-ring hy 99.9 8.6E-22 1.9E-26 174.0 14.1 111 127-242 375-490 (633)
23 PLN02774 brassinosteroid-6-oxi 99.9 1.2E-21 2.6E-26 168.4 14.4 133 108-242 220-367 (463)
24 PLN02936 epsilon-ring hydroxyl 99.9 1.3E-21 2.9E-26 169.2 14.3 112 127-242 262-378 (489)
25 PLN02655 ent-kaurene oxidase 99.9 2.2E-21 4.8E-26 166.9 14.9 112 127-242 246-362 (466)
26 PLN02302 ent-kaurenoic acid ox 99.9 6.1E-21 1.3E-25 165.3 13.8 115 127-242 267-391 (490)
27 PLN03141 3-epi-6-deoxocathaste 99.9 1.2E-20 2.6E-25 161.9 14.1 112 127-242 234-355 (452)
28 KOG0158|consensus 99.8 6E-22 1.3E-26 167.5 5.5 95 1-97 394-497 (499)
29 PLN02196 abscisic acid 8'-hydr 99.8 1.7E-20 3.7E-25 161.3 13.5 130 108-242 223-367 (463)
30 PLN02987 Cytochrome P450, fami 99.8 6.8E-20 1.5E-24 157.6 13.8 111 127-242 251-370 (472)
31 KOG0684|consensus 99.8 8.7E-20 1.9E-24 149.1 13.3 135 106-242 226-378 (486)
32 PTZ00404 cytochrome P450; Prov 99.8 2.2E-20 4.8E-25 161.5 6.9 96 1-96 384-480 (482)
33 KOG0156|consensus 99.8 7.1E-20 1.5E-24 156.4 6.3 80 1-81 386-470 (489)
34 PLN02394 trans-cinnamate 4-mon 99.8 1.5E-19 3.2E-24 157.1 7.1 98 1-98 393-501 (503)
35 COG2124 CypX Cytochrome P450 [ 99.8 1E-18 2.2E-23 147.8 11.7 120 106-241 191-319 (411)
36 PLN02169 fatty acid (omega-1)- 99.8 1E-19 2.3E-24 157.6 5.9 95 1-97 395-498 (500)
37 PLN02971 tryptophan N-hydroxyl 99.8 1.8E-19 4E-24 157.7 6.5 98 1-98 427-533 (543)
38 KOG0157|consensus 99.8 1.8E-19 3.9E-24 155.7 5.2 96 1-98 392-495 (497)
39 PLN00168 Cytochrome P450; Prov 99.8 5.1E-19 1.1E-23 154.2 6.1 70 1-70 407-487 (519)
40 PLN00110 flavonoid 3',5'-hydro 99.8 5.8E-19 1.3E-23 153.2 6.3 98 1-98 389-496 (504)
41 PF00067 p450: Cytochrome P450 99.8 5.5E-19 1.2E-23 150.8 5.5 70 1-70 362-437 (463)
42 PLN02500 cytochrome P450 90B1 99.8 6.7E-19 1.5E-23 152.5 5.7 70 1-70 383-464 (490)
43 PLN03018 homomethionine N-hydr 99.8 1.3E-18 2.9E-23 151.7 6.8 98 1-98 414-523 (534)
44 PLN02426 cytochrome P450, fami 99.7 1.2E-18 2.6E-23 151.0 5.7 98 1-98 394-499 (502)
45 PLN02738 carotene beta-ring hy 99.7 1.8E-18 3.8E-23 153.1 6.6 97 1-98 489-594 (633)
46 PLN03234 cytochrome P450 83B1; 99.7 1.8E-18 3.8E-23 150.3 6.2 89 1-89 388-488 (499)
47 PLN03141 3-epi-6-deoxocathaste 99.7 1.8E-18 3.9E-23 148.4 6.0 70 1-70 354-425 (452)
48 PLN02183 ferulate 5-hydroxylas 99.7 2.1E-18 4.5E-23 150.3 6.4 69 1-69 403-478 (516)
49 PLN03195 fatty acid omega-hydr 99.7 1.2E-18 2.5E-23 151.9 4.9 69 2-70 413-488 (516)
50 PLN02655 ent-kaurene oxidase 99.7 3.6E-18 7.7E-23 147.1 6.4 97 1-98 361-463 (466)
51 PLN02290 cytokinin trans-hydro 99.7 2.6E-18 5.7E-23 149.8 5.5 70 1-70 414-487 (516)
52 PLN02196 abscisic acid 8'-hydr 99.7 3.9E-18 8.4E-23 146.7 5.6 70 1-70 366-436 (463)
53 PLN02966 cytochrome P450 83A1 99.7 4.6E-18 1E-22 147.7 6.0 70 1-70 391-467 (502)
54 PLN03112 cytochrome P450 famil 99.7 6.6E-18 1.4E-22 147.2 6.9 100 1-100 396-509 (514)
55 PLN02687 flavonoid 3'-monooxyg 99.7 5.7E-18 1.2E-22 147.6 6.4 70 1-70 397-476 (517)
56 PLN02648 allene oxide synthase 99.7 4.6E-17 1E-21 139.8 11.6 110 131-242 257-378 (480)
57 PLN02302 ent-kaurenoic acid ox 99.7 6.4E-18 1.4E-22 146.5 6.2 70 1-70 390-461 (490)
58 PLN02774 brassinosteroid-6-oxi 99.7 6.6E-18 1.4E-22 145.3 4.9 70 1-70 366-438 (463)
59 PLN02936 epsilon-ring hydroxyl 99.7 1E-17 2.2E-22 145.1 5.5 96 1-98 377-481 (489)
60 PLN02987 Cytochrome P450, fami 99.7 2.8E-17 6.2E-22 141.4 6.2 71 1-71 369-444 (472)
61 KOG0159|consensus 99.7 8.3E-17 1.8E-21 134.5 5.0 94 2-97 417-516 (519)
62 KOG0684|consensus 99.6 4.5E-16 9.9E-21 127.5 5.1 68 2-69 378-455 (486)
63 COG2124 CypX Cytochrome P450 [ 99.6 1.3E-15 2.8E-20 129.0 4.3 64 1-69 319-383 (411)
64 PLN02648 allene oxide synthase 99.5 1.2E-14 2.5E-19 125.1 5.3 69 1-69 377-458 (480)
65 PF08492 SRP72: SRP72 RNA-bind 82.1 1.2 2.7E-05 26.5 1.9 15 22-36 43-57 (59)
66 PF12554 MOZART1: Mitotic-spin 75.3 13 0.00028 21.2 4.7 42 147-188 6-47 (48)
67 PF05952 ComX: Bacillus compet 66.8 4.4 9.5E-05 24.0 1.6 26 168-193 3-28 (57)
68 COG2101 SPT15 TATA-box binding 61.6 2.7 5.8E-05 31.0 0.0 31 20-50 35-70 (185)
69 PF15300 INT_SG_DDX_CT_C: INTS 53.4 15 0.00032 22.5 2.3 15 205-219 40-54 (65)
70 PF09604 Potass_KdpF: F subuni 48.3 7.6 0.00017 18.7 0.4 6 22-27 20-25 (25)
71 PRK14759 potassium-transportin 48.0 7.7 0.00017 19.4 0.4 6 22-27 24-29 (29)
72 cd04518 TBP_archaea archaeal T 47.3 5.6 0.00012 29.7 -0.3 30 20-49 29-63 (174)
73 PLN00062 TATA-box-binding prot 38.2 8.9 0.00019 28.7 -0.4 30 20-49 29-63 (179)
74 PRK00394 transcription factor; 37.8 11 0.00023 28.3 -0.0 29 20-48 28-61 (179)
75 KOG3302|consensus 37.6 12 0.00026 28.2 0.2 31 19-49 49-84 (200)
76 PF14129 DUF4296: Domain of un 36.8 1.2E+02 0.0025 19.6 7.0 48 144-191 30-77 (87)
77 COG0851 MinE Septum formation 35.3 55 0.0012 21.3 2.9 17 178-194 36-52 (88)
78 cd00652 TBP_TLF TATA box bindi 35.0 11 0.00024 28.1 -0.3 29 20-48 29-62 (174)
79 TIGR02115 potass_kdpF K+-trans 34.5 11 0.00024 18.4 -0.3 7 22-28 19-25 (26)
80 KOG4189|consensus 34.1 2.1E+02 0.0046 21.8 6.9 48 144-191 129-178 (209)
81 PF00352 TBP: Transcription fa 34.0 7.8 0.00017 25.0 -1.1 30 20-49 31-65 (86)
82 cd04516 TBP_eukaryotes eukaryo 32.1 13 0.00029 27.7 -0.3 31 17-48 27-62 (174)
83 cd07922 CarBa CarBa is the A s 31.6 73 0.0016 20.4 3.0 37 166-202 5-41 (81)
84 KOG3506|consensus 31.4 22 0.00047 20.7 0.6 11 37-47 12-22 (56)
85 PF14483 Cut8_M: Cut8 dimerisa 29.0 1E+02 0.0022 16.5 3.1 21 166-186 14-35 (38)
86 PF05906 DUF865: Herpesvirus-7 28.2 26 0.00056 17.5 0.4 20 18-42 15-34 (35)
87 PF07886 BA14K: BA14K-like pro 26.4 51 0.0011 16.8 1.4 16 32-47 16-31 (31)
88 PF08285 DPM3: Dolichol-phosph 25.1 1.1E+02 0.0024 20.1 3.1 28 164-191 53-80 (91)
89 PRK13467 F0F1 ATP synthase sub 22.9 1.4E+02 0.0031 18.3 3.1 25 164-188 20-44 (66)
90 KOG2154|consensus 22.1 3E+02 0.0065 24.2 5.8 88 127-215 337-426 (505)
91 TIGR01260 ATP_synt_c ATP synth 20.7 1.6E+02 0.0035 17.4 3.0 24 165-188 11-34 (58)
92 KOG2376|consensus 20.5 55 0.0012 29.4 1.3 25 23-47 582-606 (652)
93 PRK13466 F0F1 ATP synthase sub 20.1 1.8E+02 0.0038 17.9 3.1 24 165-188 21-44 (66)
No 1
>KOG0156|consensus
Probab=99.95 E-value=3e-27 Score=201.37 Aligned_cols=134 Identities=25% Similarity=0.341 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHH--------hhhhHHHHHHhhcCCCC-CCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHH
Q psy16032 109 ARMIATLFLSNLIKQYR--------VTYESAFLQEAKSNPEI-YTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQD 179 (243)
Q Consensus 109 ~~~~~~~~~~~~~~~~~--------~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~ 179 (243)
.....+.+++..+++++ .|++|.++...++++.. ++++++...+.++++||.|||++++.|++.+|++||+
T Consensus 239 ~~~~~~~~~~~~i~eh~~~~~~~~~~D~vD~lL~~~~~~~~~~~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pe 318 (489)
T KOG0156|consen 239 VSKRLDEFLERIIDEHREKIGDEEGRDFVDALLKLMKEEKAEGLTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPE 318 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHH
Confidence 33345677777777753 47999999987654333 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCC-CChhhhcCChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 180 VQDTLRAEITSKSSGTI-VTLDDITSMSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 180 ~~~~l~~Ei~~~~~~~~-~~~~~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
+|+|+++||+++.|.++ ++.+|+.+|||++|+|+|++|++|++|+.+||.++ .||.||.|+.+
T Consensus 319 v~~K~qeEId~vvG~~r~v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v 387 (489)
T KOG0156|consen 319 VQKKLQEEIDEVVGKGRLVSESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTV 387 (489)
T ss_pred HHHHHHHHHHHHhCCCCCCChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEE
Confidence 99999999999999998 99999999999999999999999999999999864 77899988764
No 2
>KOG0158|consensus
Probab=99.93 E-value=4e-25 Score=186.62 Aligned_cols=130 Identities=20% Similarity=0.238 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHH------HhhhhHHHHHHhhc---C--CC-CCCHHHHHHHHHHHhhccccchHHHHHHHHHHHh
Q psy16032 108 LARMIATLFLSNLIKQY------RVTYESAFLQEAKS---N--PE-IYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMA 175 (243)
Q Consensus 108 ~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~~~---~--~~-~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~ 175 (243)
.........+...++.+ +.|+++.+++.... + .. .+|.++++++++.+++||+||||++|++++|.|+
T Consensus 243 ~~~~~~~~~v~~~v~~R~~~~~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeTts~tlsf~lYeLA 322 (499)
T KOG0158|consen 243 DVTDFFRKLVNSRVEQREKENIERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFETTASTLSFALYELA 322 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh
Confidence 33444445555555544 34899999987632 1 11 4899999999999999999999999999999999
Q ss_pred hCHHHHHHHHHHHHhhcCCCC-CChhhhcCChhHHHHHHHHhccCCCccCCcccccccCCCCCC
Q psy16032 176 MEQDVQDTLRAEITSKSSGTI-VTLDDITSMSYLAACINETHRYRTIVTLGTPDQVYLSSGLPD 238 (243)
Q Consensus 176 ~~p~~~~~l~~Ei~~~~~~~~-~~~~~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~~~~~~ipg 238 (243)
+||++|+|||+||++++.+.. ++++.+.+|+||++||+||||+||++|. +.|.+++++.+||
T Consensus 323 ~~PdvQ~kLreEI~~~~~~~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~-~~R~C~k~~~i~~ 385 (499)
T KOG0158|consen 323 KNPDVQDKLREEIDEVLEEKEGLTYDSLSKLKYLDMVIKETLRLYPPAPF-LNRECTKDYEIPG 385 (499)
T ss_pred cChHHHHHHHHHHHHHhcccCCCCHHHHhCCcHHHHHHHHHHhhCCCccc-ccceecCceecCC
Confidence 999999999999999977766 9999999999999999999999999998 8899998888874
No 3
>PLN02971 tryptophan N-hydroxylase
Probab=99.93 E-value=5.3e-25 Score=192.41 Aligned_cols=117 Identities=16% Similarity=0.292 Sum_probs=103.7
Q ss_pred hhhhHHHHHHhhcCCC-CCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCC-CChhhhc
Q psy16032 126 VTYESAFLQEAKSNPE-IYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTI-VTLDDIT 203 (243)
Q Consensus 126 ~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~-~~~~~~~ 203 (243)
.|+++.++...++++. .++++++.+++.++++||+|||+++++|++++|+.||++|+|+++||+++++++. ++++++.
T Consensus 305 ~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~EI~~v~g~~~~~t~~d~~ 384 (543)
T PLN02971 305 EDFLDIFISIKDEAGQPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRVVGKERFVQESDIP 384 (543)
T ss_pred cCHHHHHHhhhcccCCCCCCHHHHHHhHHHHheeccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHhc
Confidence 3788888875433222 4899999999999999999999999999999999999999999999999998766 9999999
Q ss_pred CChhHHHHHHHHhccCCCccCCccccc-----ccCCCCCCcccc
Q psy16032 204 SMSYLAACINETHRYRTIVTLGTPDQV-----YLSSGLPDSERL 242 (243)
Q Consensus 204 ~l~yl~~~i~E~lR~~p~~~~~~~r~~-----~~~~~ipg~~~~ 242 (243)
+|||++|||+|+||++|++|+.++|.+ ..|+.||-|+.+
T Consensus 385 ~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v 428 (543)
T PLN02971 385 KLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQV 428 (543)
T ss_pred cCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEE
Confidence 999999999999999999998888876 467788877654
No 4
>KOG0159|consensus
Probab=99.91 E-value=1.7e-24 Score=179.94 Aligned_cols=155 Identities=23% Similarity=0.283 Sum_probs=129.4
Q ss_pred eeccCcccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q psy16032 84 LTLTPDQIHLSGLPDGKRMCMGGELARMIATLFLSNLIKQYRVT------YESAFLQEAKSNPEIYTSKQLYHLLGDLFG 157 (243)
Q Consensus 84 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ 157 (243)
+...|..|++..++.|+++..+++.+...++.++++.+++...+ .-++++..... ..++.+++..++.+++.
T Consensus 249 l~~~p~l~r~~~t~~wk~~~~~~D~i~~~~~~~Id~~l~~l~~~~~~~~~~~~~l~~~L~~--~~l~~k~~~~~~~dll~ 326 (519)
T KOG0159|consen 249 LMLMPSLWRYFPTKVWKDFVRAWDQIFDVGDKYIDNALEELEKQDSAGSEYTGSLLELLLR--KELSRKDAKANVMDLLA 326 (519)
T ss_pred HHhcchHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH--ccCCHHHHHHHHHHHHH
Confidence 44567778888889999999999999999999998888765442 12233322221 23789999999999999
Q ss_pred ccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCC-C-CChhhhcCChhHHHHHHHHhccCCCccCCcccc-----c
Q psy16032 158 ASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGT-I-VTLDDITSMSYLAACINETHRYRTIVTLGTPDQ-----V 230 (243)
Q Consensus 158 ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~-~-~~~~~~~~l~yl~~~i~E~lR~~p~~~~~~~r~-----~ 230 (243)
||.|||+.++.|++|.|++||++|+||++|+.++..+. . ++.+++.+||||.|||||++|+||++|.. .|. .
T Consensus 327 aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~-~R~l~~D~v 405 (519)
T KOG0159|consen 327 AGVDTTSNTLLWALYELARNPEVQQRLREEILAVLPSGNSELTQKALTNMPYLRACIKETLRLYPVVPGN-GRVLPKDLV 405 (519)
T ss_pred HhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHHHhhhceecccccc-ccccchhce
Confidence 99999999999999999999999999999999998774 3 99999999999999999999999999964 344 5
Q ss_pred ccCCCCCCccc
Q psy16032 231 YLSSGLPDSER 241 (243)
Q Consensus 231 ~~~~~ipg~~~ 241 (243)
..||.||-||-
T Consensus 406 L~gY~vPagT~ 416 (519)
T KOG0159|consen 406 LSGYHVPAGTL 416 (519)
T ss_pred eccceecCCCe
Confidence 68999998774
No 5
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.91 E-value=5.8e-24 Score=184.48 Aligned_cols=116 Identities=16% Similarity=0.269 Sum_probs=101.7
Q ss_pred hhhHHHHHHhhcC--CCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCC-CChhhhc
Q psy16032 127 TYESAFLQEAKSN--PEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTI-VTLDDIT 203 (243)
Q Consensus 127 ~~~~~ll~~~~~~--~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~-~~~~~~~ 203 (243)
|+++.+++..+++ +..++++++..++.++++||+|||+++++|++++|++||++|+|+++|++++.++.. +++++++
T Consensus 266 d~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~l~ 345 (499)
T PLN03234 266 SFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDKGYVSEEDIP 345 (499)
T ss_pred cHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHHh
Confidence 5777777654322 225899999999999999999999999999999999999999999999999998766 8999999
Q ss_pred CChhHHHHHHHHhccCCCccCCccccc-----ccCCCCCCcccc
Q psy16032 204 SMSYLAACINETHRYRTIVTLGTPDQV-----YLSSGLPDSERL 242 (243)
Q Consensus 204 ~l~yl~~~i~E~lR~~p~~~~~~~r~~-----~~~~~ipg~~~~ 242 (243)
+|||++|||+|+||++|++|+.++|.+ ..|+.||.|+.+
T Consensus 346 ~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v 389 (499)
T PLN03234 346 NLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTII 389 (499)
T ss_pred cChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEE
Confidence 999999999999999999998777775 367788988765
No 6
>PLN00168 Cytochrome P450; Provisional
Probab=99.91 E-value=8.9e-24 Score=184.00 Aligned_cols=116 Identities=20% Similarity=0.350 Sum_probs=101.1
Q ss_pred hhhHHHHHHhh--cCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCC-C-CChhhh
Q psy16032 127 TYESAFLQEAK--SNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGT-I-VTLDDI 202 (243)
Q Consensus 127 ~~~~~ll~~~~--~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~-~-~~~~~~ 202 (243)
|+++.++.... +++..++++++..++.++++||+|||+++++|++++|++||++|+|+++|++++.++. . ++.+++
T Consensus 284 d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~ 363 (519)
T PLN00168 284 SYVDTLLDIRLPEDGDRALTDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLHDEIKAKTGDDQEEVSEEDV 363 (519)
T ss_pred cHHHHHHhhhccccccCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHh
Confidence 57888886542 2234599999999999999999999999999999999999999999999999999764 3 899999
Q ss_pred cCChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 203 TSMSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 203 ~~l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
++|||+++||+|+||++|++++.++|.+. .|+.||.|+.+
T Consensus 364 ~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v 408 (519)
T PLN00168 364 HKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATV 408 (519)
T ss_pred hCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEE
Confidence 99999999999999999999988888874 56677777654
No 7
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.90 E-value=2.2e-23 Score=181.39 Aligned_cols=116 Identities=20% Similarity=0.307 Sum_probs=102.0
Q ss_pred hhhHHHHHHhhcCC-CCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCC-CChhhhcC
Q psy16032 127 TYESAFLQEAKSNP-EIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTI-VTLDDITS 204 (243)
Q Consensus 127 ~~~~~ll~~~~~~~-~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~-~~~~~~~~ 204 (243)
|+++.++....+++ ..++++++..++..+++||+|||+++++|++++|++||++|+|+++|++++.++.. ++.+++++
T Consensus 275 d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~t~~~l~~ 354 (514)
T PLN03112 275 DFVDVLLSLPGENGKEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVGRNRMVQESDLVH 354 (514)
T ss_pred hHHHHHHHhhccccccCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhChHHHHHHHHHHHHhcCCCCcCChhhhcc
Confidence 68888887543322 24899999999999999999999999999999999999999999999999998766 99999999
Q ss_pred ChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 205 MSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 205 l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
|||++|||+|++|++|+++++++|.+. .|+.||.|+.+
T Consensus 355 L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v 397 (514)
T PLN03112 355 LNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRV 397 (514)
T ss_pred CcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEE
Confidence 999999999999999999988888764 56677777654
No 8
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.90 E-value=2.3e-23 Score=180.93 Aligned_cols=115 Identities=18% Similarity=0.269 Sum_probs=101.7
Q ss_pred hhhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCC-CChhhhcC
Q psy16032 126 VTYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTI-VTLDDITS 204 (243)
Q Consensus 126 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~-~~~~~~~~ 204 (243)
.|+++.+++...+ +.++++++...+.++++||+|||+.+++|++++|++||++|+||++|++++.+++. ++++++.+
T Consensus 274 ~d~l~~ll~~~~~--~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~l~~ 351 (503)
T PLN02394 274 KCAIDHILEAQKK--GEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPGNQVTEPDTHK 351 (503)
T ss_pred hhHHHHHHhcccc--CCCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCHhHHhh
Confidence 4678888876433 34899999999999999999999999999999999999999999999999998755 89999999
Q ss_pred ChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 205 MSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 205 l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
|||++|||+|+||++|++|+..+|.+. .|+.||.|+.+
T Consensus 352 lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V 394 (503)
T PLN02394 352 LPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKI 394 (503)
T ss_pred CHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEE
Confidence 999999999999999999998888764 67788888754
No 9
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.90 E-value=1.9e-23 Score=181.83 Aligned_cols=116 Identities=21% Similarity=0.306 Sum_probs=96.7
Q ss_pred hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCC------------
Q psy16032 127 TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSG------------ 194 (243)
Q Consensus 127 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~------------ 194 (243)
|+++.++...++++..++++++.+++.++++||+|||+++++|++|+|++||++|+|+++|++++.++
T Consensus 272 d~l~~ll~~~~~~~~~l~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~ 351 (516)
T PLN03195 272 DILSRFIELGEDPDSNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDSQS 351 (516)
T ss_pred cHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccccccccccch
Confidence 67777776433333458999999999999999999999999999999999999999999999987642
Q ss_pred --------CC-CChhhhcCChhHHHHHHHHhccCCCccCCccccc-----ccCCCCCCcccc
Q psy16032 195 --------TI-VTLDDITSMSYLAACINETHRYRTIVTLGTPDQV-----YLSSGLPDSERL 242 (243)
Q Consensus 195 --------~~-~~~~~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~-----~~~~~ipg~~~~ 242 (243)
.. ++++++++|||++|||+|+||++|++|...++.+ ..|+.||.|+.+
T Consensus 352 ~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~~r~~~~d~~~~~G~~IpkGt~V 413 (516)
T PLN03195 352 FNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMV 413 (516)
T ss_pred hhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcchhhhhccCcCcCCCcEECCCCEE
Confidence 23 8899999999999999999999999998755543 256777766644
No 10
>PLN02290 cytokinin trans-hydroxylase
Probab=99.90 E-value=2.8e-23 Score=180.83 Aligned_cols=115 Identities=23% Similarity=0.355 Sum_probs=100.1
Q ss_pred hhhHHHHHHhhc---CCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCCCChhhhc
Q psy16032 127 TYESAFLQEAKS---NPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDIT 203 (243)
Q Consensus 127 ~~~~~ll~~~~~---~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~ 203 (243)
|+++.++..... ++..++++++.+.+.++++||+|||+++++|++++|++||++|+|+++|++++++++.+++++++
T Consensus 293 d~l~~ll~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~l~ 372 (516)
T PLN02290 293 DLLGMLLNEMEKKRSNGFNLNLQLIMDECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGGETPSVDHLS 372 (516)
T ss_pred CHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCHHHHh
Confidence 678888865432 22247899999999999999999999999999999999999999999999999987669999999
Q ss_pred CChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 204 SMSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 204 ~l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
+|||++|||+|+||++|+++. ++|.+. .|+.||.|+.+
T Consensus 373 ~lpYl~avi~EtlRl~p~~~~-~~R~~~~d~~i~g~~IP~Gt~V 415 (516)
T PLN02290 373 KLTLLNMVINESLRLYPPATL-LPRMAFEDIKLGDLHIPKGLSI 415 (516)
T ss_pred cChHHHHHHHHHHHcCCCccc-cceeecCCeeECCEEECCCCEE
Confidence 999999999999999999995 688874 56778877754
No 11
>PLN02966 cytochrome P450 83A1
Probab=99.90 E-value=3.2e-23 Score=179.86 Aligned_cols=117 Identities=19% Similarity=0.279 Sum_probs=101.6
Q ss_pred hhhhHHHHHHhhcC--CCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCC--C-CChh
Q psy16032 126 VTYESAFLQEAKSN--PEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGT--I-VTLD 200 (243)
Q Consensus 126 ~~~~~~ll~~~~~~--~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~--~-~~~~ 200 (243)
.++++.++...++. +..++++++...+.++++||+|||+++++|++++|++||++|+|+++|++++.++. . ++++
T Consensus 266 ~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~ 345 (502)
T PLN02966 266 ESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTED 345 (502)
T ss_pred ccHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccCCCcCCHh
Confidence 36888888665432 23589999999999999999999999999999999999999999999999998642 3 8999
Q ss_pred hhcCChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 201 DITSMSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 201 ~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
++++|||++|||+|+||++|++|+.++|.+. .|+.||.|+.+
T Consensus 346 dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V 392 (502)
T PLN02966 346 DVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTV 392 (502)
T ss_pred hccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEE
Confidence 9999999999999999999999987788864 66788888764
No 12
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.90 E-value=5.2e-23 Score=179.09 Aligned_cols=116 Identities=22% Similarity=0.325 Sum_probs=102.7
Q ss_pred hhhHHHHHHhhc-----CCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCC-CChh
Q psy16032 127 TYESAFLQEAKS-----NPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTI-VTLD 200 (243)
Q Consensus 127 ~~~~~ll~~~~~-----~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~-~~~~ 200 (243)
|+++.++....+ ++..++++++..++..+++||+|||+++++|++++|++||++|+|+++|++++.+... ++.+
T Consensus 272 d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~ 351 (517)
T PLN02687 272 DLLSTLLALKREQQADGEGGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQEELDAVVGRDRLVSES 351 (517)
T ss_pred cHHHHHHHhhccccccccccCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHH
Confidence 688888876432 2335899999999999999999999999999999999999999999999999988766 9999
Q ss_pred hhcCChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 201 DITSMSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 201 ~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
++.+|||+++||+|+||++|+++.+++|.+. .|+.||.|+.+
T Consensus 352 ~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v 398 (517)
T PLN02687 352 DLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATL 398 (517)
T ss_pred HhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEE
Confidence 9999999999999999999999988888875 56778877754
No 13
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.90 E-value=6.6e-23 Score=177.78 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=102.4
Q ss_pred hhhHHHHHHhhc-CCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCC-CChhhhcC
Q psy16032 127 TYESAFLQEAKS-NPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTI-VTLDDITS 204 (243)
Q Consensus 127 ~~~~~ll~~~~~-~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~-~~~~~~~~ 204 (243)
|+++.++..... ++..++++++..++.++++||+|||+++++|++++|++||++|+|+++|++++.++.. ++++++++
T Consensus 268 d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~~~~ 347 (504)
T PLN00110 268 DFLDVVMANQENSTGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRNRRLVESDLPK 347 (504)
T ss_pred ChhhHHhhcccccCCCCCCHHHHHHHHHhhhcccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCHHHhhc
Confidence 688888865422 3345899999999999999999999999999999999999999999999999998766 99999999
Q ss_pred ChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 205 MSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 205 l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
|||+++||+|+||++|++++.++|.+. .|+.||.|+.+
T Consensus 348 lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V 390 (504)
T PLN00110 348 LPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRL 390 (504)
T ss_pred ChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEE
Confidence 999999999999999999988888874 56678877764
No 14
>PTZ00404 cytochrome P450; Provisional
Probab=99.89 E-value=9e-23 Score=176.32 Aligned_cols=115 Identities=25% Similarity=0.375 Sum_probs=96.3
Q ss_pred hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCC-CChhhhcCC
Q psy16032 127 TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTI-VTLDDITSM 205 (243)
Q Consensus 127 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~-~~~~~~~~l 205 (243)
|+++.++....+. ......++.+++.++++||+|||+++++|++++|++||++|+|+++|++++.++.. ++++++.+|
T Consensus 264 dll~~ll~~~~~~-~~~~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~~l~~L 342 (482)
T PTZ00404 264 DLLDLLIKEYGTN-TDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGRNKVLLSDRQST 342 (482)
T ss_pred cHHHHHHHHhccC-CcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCCCCCCccccccC
Confidence 6888888763221 11233458889999999999999999999999999999999999999999998755 899999999
Q ss_pred hhHHHHHHHHhccCCCccCCcccccc------cCCCCCCcccc
Q psy16032 206 SYLAACINETHRYRTIVTLGTPDQVY------LSSGLPDSERL 242 (243)
Q Consensus 206 ~yl~~~i~E~lR~~p~~~~~~~r~~~------~~~~ipg~~~~ 242 (243)
||+++||+|+||++|++|++++|.+. .|+.||.|+.+
T Consensus 343 ~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V 385 (482)
T PTZ00404 343 PYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQI 385 (482)
T ss_pred hHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEE
Confidence 99999999999999999987888865 55566766654
No 15
>PLN02183 ferulate 5-hydroxylase
Probab=99.89 E-value=1.2e-22 Score=176.72 Aligned_cols=115 Identities=15% Similarity=0.201 Sum_probs=99.2
Q ss_pred hhhHHHHHHhhc-----------CCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCC
Q psy16032 127 TYESAFLQEAKS-----------NPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGT 195 (243)
Q Consensus 127 ~~~~~ll~~~~~-----------~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~ 195 (243)
|+++.++..... ++..++++++...+.++++||+|||+++++|++++|++||++|+|+++|++++++..
T Consensus 273 d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~Ei~~v~~~~ 352 (516)
T PLN02183 273 DMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELADVVGLN 352 (516)
T ss_pred cHHHHHHHhhhccccccccccccccCCCCHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCC
Confidence 678888864321 122489999999999999999999999999999999999999999999999999865
Q ss_pred C-CChhhhcCChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 196 I-VTLDDITSMSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 196 ~-~~~~~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
. ++.+++.+|||++|||+|+||++|++|+.. |.+. .|+.||.|+.+
T Consensus 353 ~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~-r~~~~d~~l~g~~IPkGt~V 404 (516)
T PLN02183 353 RRVEESDLEKLTYLKCTLKETLRLHPPIPLLL-HETAEDAEVAGYFIPKRSRV 404 (516)
T ss_pred CCCCHHHhccChHHHHHHHHHhccCCCcccee-eeccCceeECCEEECCCCEE
Confidence 5 899999999999999999999999999864 6544 67788877754
No 16
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.89 E-value=2e-22 Score=174.54 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHH-------hhhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHH
Q psy16032 110 RMIATLFLSNLIKQYR-------VTYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQD 182 (243)
Q Consensus 110 ~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~ 182 (243)
.....+++.+.+++++ .|+++.++... .+++++.+.+.++++||+|||+++++|++|.|++||++|+
T Consensus 255 ~~~~~~~~~~~I~~r~~~~~~~~~dll~~ll~~~------~~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~ 328 (502)
T PLN02426 255 IKLVDELAAEVIRQRRKLGFSASKDLLSRFMASI------NDDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVAS 328 (502)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcchHHHHHHhcC------CCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHH
Confidence 3344455555555443 36777777542 2678899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCC--CChhhhcCChhHHHHHHHHhccCCCccCCcccccc------cCCCCCCcccc
Q psy16032 183 TLRAEITSKSSGTI--VTLDDITSMSYLAACINETHRYRTIVTLGTPDQVY------LSSGLPDSERL 242 (243)
Q Consensus 183 ~l~~Ei~~~~~~~~--~~~~~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~~------~~~~ipg~~~~ 242 (243)
|+++|++++.+++. ++.+++.+|||++|||+|+||++||+|... |.+. .|+.||.|+.+
T Consensus 329 kl~~Ei~~~~~~~~~~~t~~~l~~LpYl~avi~EtLRl~p~v~~~~-r~~~~d~~~~~G~~Ip~Gt~V 395 (502)
T PLN02426 329 AIREEADRVMGPNQEAASFEEMKEMHYLHAALYESMRLFPPVQFDS-KFAAEDDVLPDGTFVAKGTRV 395 (502)
T ss_pred HHHHHHHHhhCCCCCCCCHHHHhcChHHHHHHHHHHhCCCCCCCcc-eeeccCCCcCCCcEECCCCEE
Confidence 99999999887643 899999999999999999999999999764 5543 57788888764
No 17
>KOG0157|consensus
Probab=99.89 E-value=1.8e-22 Score=174.36 Aligned_cols=131 Identities=23% Similarity=0.349 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh--------------hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHH
Q psy16032 107 ELARMIATLFLSNLIKQYRV--------------TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLL 172 (243)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~ 172 (243)
..+.+....++.+.|+++++ |+++.+... .+..++++++.+.+.++++||+|||+++++|+++
T Consensus 240 ~~a~~~~~~~~~~iI~~rr~~~~~~~~~~~~~~~d~L~~~~~~---~~~~l~~~~i~d~v~tf~faG~DTTss~ltw~l~ 316 (497)
T KOG0157|consen 240 KKARKILHDFLEKIIRERREELEKEGSGEEKKRLDFLDTLLLE---EDKPLTDEDIRDEVDTFMFAGHDTTSSALTWTLW 316 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhHHHHHHHh---ccCCCCHHHHHHHHHHheeeccchHHHHHHHHHH
Confidence 34455556666666655552 344432222 1156899999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHhhcCCCC--CChhhhcCChhHHHHHHHHhccCCCccCCccccccc------CCCCCCccc
Q psy16032 173 VMAMEQDVQDTLRAEITSKSSGTI--VTLDDITSMSYLAACINETHRYRTIVTLGTPDQVYL------SSGLPDSER 241 (243)
Q Consensus 173 ~l~~~p~~~~~l~~Ei~~~~~~~~--~~~~~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~~~------~~~ipg~~~ 241 (243)
.|+.||++|+|+++|+.+++++.. ....+.++|+|+++||+||||+|||+|+ +.|.+.+ |+.||.|+.
T Consensus 317 ~La~hP~vq~k~~eEi~~i~~~~~~~~~~~~~~~m~yl~~vi~EsLRLyppvp~-~~R~~~~d~~l~~g~~IPkG~~ 392 (497)
T KOG0157|consen 317 LLAKHPEVQEKLREEVDEILGNRDDKWEVEKLDQMKYLEMVIKESLRLYPPVPL-VARKATKDVKLPGGYTIPKGTN 392 (497)
T ss_pred HHhcCHHHHHHHHHHHHHHhCCCCCCCChhhhhhhHHHHHHHHHHhccCCCCch-hhcccCCCeEcCCCcEeCCCCE
Confidence 999999999999999999998655 2333333699999999999999999997 4677654 455555543
No 18
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.89 E-value=2.5e-22 Score=173.95 Aligned_cols=111 Identities=17% Similarity=0.277 Sum_probs=91.7
Q ss_pred hhhHHHHHHhhcC---CCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCCCChhhhc
Q psy16032 127 TYESAFLQEAKSN---PEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDIT 203 (243)
Q Consensus 127 ~~~~~ll~~~~~~---~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~ 203 (243)
|+++.++...... +..++++++.+++.++++||+|||+++++|++++|+.||++|+|+++|+++++ +.+++.
T Consensus 278 d~l~~ll~~~~~~~~~~~~~~~~~i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~~v~-----~~~dl~ 352 (500)
T PLN02169 278 DALTYYMNVDTSKYKLLKPKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTKF-----DNEDLE 352 (500)
T ss_pred CHHHHHHhccccccccccCCChHHHHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhC-----CHHHHh
Confidence 5677777543211 12378889999999999999999999999999999999999999999998874 678999
Q ss_pred CChhHHHHHHHHhccCCCccCCccccc-----ccCCCCCCcccc
Q psy16032 204 SMSYLAACINETHRYRTIVTLGTPDQV-----YLSSGLPDSERL 242 (243)
Q Consensus 204 ~l~yl~~~i~E~lR~~p~~~~~~~r~~-----~~~~~ipg~~~~ 242 (243)
+|||+++||+|+||++|++|+..++.+ ..|+.||.|+.+
T Consensus 353 ~L~Yl~avi~EtLRl~P~vp~~~r~~~~d~~~~~G~~IpkGt~v 396 (500)
T PLN02169 353 KLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKI 396 (500)
T ss_pred cCHHHHHHHHHHHhcCCCCCcCceecCCCCCccCCEEECCCCEE
Confidence 999999999999999999998765543 246667766643
No 19
>PLN03018 homomethionine N-hydroxylase
Probab=99.88 E-value=4.4e-22 Score=173.40 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=101.7
Q ss_pred hhhhHHHHHHhhcCCC-CCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCC-CChhhhc
Q psy16032 126 VTYESAFLQEAKSNPE-IYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTI-VTLDDIT 203 (243)
Q Consensus 126 ~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~-~~~~~~~ 203 (243)
.|+++.++...++++. .++++++...+.++++||+|||+++++|++++|+.||++|+|+++|++++++++. ++.+++.
T Consensus 292 ~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~ 371 (534)
T PLN03018 292 EDWLDTFITLKDQNGKYLVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVGKDRLVQESDIP 371 (534)
T ss_pred ccHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCCHHHhc
Confidence 3688888876443332 3899999999999999999999999999999999999999999999999998766 8999999
Q ss_pred CChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 204 SMSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 204 ~l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
+|||+++||+|+||++|++|+..+|.+. .|+.||.|+.+
T Consensus 372 ~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V 415 (534)
T PLN03018 372 NLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHI 415 (534)
T ss_pred CCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEE
Confidence 9999999999999999999987788765 46667766654
No 20
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.88 E-value=2.9e-22 Score=171.02 Aligned_cols=132 Identities=24% Similarity=0.320 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHh----------hhhHHHHHHh-hcCC-CCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCH
Q psy16032 111 MIATLFLSNLIKQYRV----------TYESAFLQEA-KSNP-EIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQ 178 (243)
Q Consensus 111 ~~~~~~~~~~~~~~~~----------~~~~~ll~~~-~~~~-~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p 178 (243)
+...+++...++++++ |+++.++... +.++ ..++++++...+..+++||+|||+.+++|++++|++||
T Consensus 214 ~~~~~~~~~~i~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P 293 (463)
T PF00067_consen 214 DRLRKYIKEIIEERREELDDGDESRRDLLDSLLQASSDSDGPSGLSDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNP 293 (463)
T ss_dssp HHHHHHHHHHHHHHHHSHHSSSSSCSSHHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3444455555544432 5888888886 3333 36999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC-CChhhhcCChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 179 DVQDTLRAEITSKSSGTI-VTLDDITSMSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 179 ~~~~~l~~Ei~~~~~~~~-~~~~~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
++|+|+++|++++.++.. ++.+++.+|||++|||+|+||++|+++++++|.+. .|+.||.|+.+
T Consensus 294 ~~~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v 363 (463)
T PF00067_consen 294 EVQEKLREEIDSVLGDGREITFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIV 363 (463)
T ss_dssp HHHHHHHHHHHHHTTTSSSHHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997766 99999999999999999999999999987888875 45566666543
No 21
>PLN02500 cytochrome P450 90B1
Probab=99.88 E-value=6e-22 Score=171.47 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=94.5
Q ss_pred hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcC------CCCCChh
Q psy16032 127 TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSS------GTIVTLD 200 (243)
Q Consensus 127 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~------~~~~~~~ 200 (243)
|+++.++.. ..++++++.+++.++++||+|||+++++|++++|++||++|+|+++|++++.+ +..++++
T Consensus 264 d~l~~ll~~-----~~ls~~~i~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~ 338 (490)
T PLN02500 264 DLLGWVLKH-----SNLSTEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSGESELNWE 338 (490)
T ss_pred hHHHHHHhc-----cCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHH
Confidence 566766653 24899999999999999999999999999999999999999999999998863 2238999
Q ss_pred hhcCChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 201 DITSMSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 201 ~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
|+.+|||++|||+|+||++|++|+ ++|.+. .|+.||.|+.+
T Consensus 339 d~~~lpyl~avikEtlRl~P~~~~-~~R~~~~d~~~~G~~IPkGt~V 384 (490)
T PLN02500 339 DYKKMEFTQCVINETLRLGNVVRF-LHRKALKDVRYKGYDIPSGWKV 384 (490)
T ss_pred HhccCHHHHHHHHHHHhcCCCccC-eeeEeCCCceeCCEEECCCCEE
Confidence 999999999999999999999997 478764 56677767654
No 22
>PLN02738 carotene beta-ring hydroxylase
Probab=99.88 E-value=8.6e-22 Score=173.98 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=96.6
Q ss_pred hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCCCChhhhcCCh
Q psy16032 127 TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDITSMS 206 (243)
Q Consensus 127 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~l~ 206 (243)
++++.++.. +..++++++.+++..+++||+|||+++++|++++|++||++|+||++|+++++++..++++++++||
T Consensus 375 dil~~Ll~~----~~~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~~~~~t~edL~kLP 450 (633)
T PLN02738 375 SILHFLLAS----GDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLGDRFPTIEDMKKLK 450 (633)
T ss_pred hHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCCCCHHHHccCH
Confidence 466666643 1248999999999999999999999999999999999999999999999999986449999999999
Q ss_pred hHHHHHHHHhccCCCccCCccccc-----ccCCCCCCcccc
Q psy16032 207 YLAACINETHRYRTIVTLGTPDQV-----YLSSGLPDSERL 242 (243)
Q Consensus 207 yl~~~i~E~lR~~p~~~~~~~r~~-----~~~~~ipg~~~~ 242 (243)
||+|||+|+||++|++|... |.+ ..|+.||.|+.+
T Consensus 451 YL~AVIkEtLRL~p~~p~~~-R~a~~d~~i~gy~IPkGT~V 490 (633)
T PLN02738 451 YTTRVINESLRLYPQPPVLI-RRSLENDMLGGYPIKRGEDI 490 (633)
T ss_pred HHHHHHHHHHhcCCCccccc-eeeccCceECCEEECCCCEE
Confidence 99999999999999999854 553 467888988765
No 23
>PLN02774 brassinosteroid-6-oxidase
Probab=99.87 E-value=1.2e-21 Score=168.45 Aligned_cols=133 Identities=19% Similarity=0.167 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHHh------hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHH
Q psy16032 108 LARMIATLFLSNLIKQYRV------TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQ 181 (243)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~ 181 (243)
.+++...+++.+.+++++. |+++.++... .++..++++++..++.++++||+|||+++++|++++|++||++|
T Consensus 220 ~~~~~~~~~~~~~i~~r~~~~~~~~d~l~~ll~~~-~~~~~~s~~ei~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q 298 (463)
T PLN02774 220 QARKNIVRMLRQLIQERRASGETHTDMLGYLMRKE-GNRYKLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPKAL 298 (463)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHhCc-cCCCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHH
Confidence 3455556666666665543 6888887632 22234899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCC---CC-CChhhhcCChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 182 DTLRAEITSKSSG---TI-VTLDDITSMSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 182 ~~l~~Ei~~~~~~---~~-~~~~~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
+|+++|++++.+. .. ++++++++|||+++||+|+||++|+++. ++|.+. .|+.||-|+.+
T Consensus 299 ~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a~ikE~lRl~P~v~~-~~R~~~~d~~l~g~~IpkGt~v 367 (463)
T PLN02774 299 QELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFETSRLATIVNG-VLRKTTQDMELNGYVIPKGWRI 367 (463)
T ss_pred HHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHHHHHHHHhcCCCCCC-cccccCCCeeECCEEECCCCEE
Confidence 9999999999764 23 8999999999999999999999999985 567764 55566666543
No 24
>PLN02936 epsilon-ring hydroxylase
Probab=99.87 E-value=1.3e-21 Score=169.18 Aligned_cols=112 Identities=20% Similarity=0.244 Sum_probs=97.4
Q ss_pred hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCCCChhhhcCCh
Q psy16032 127 TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDITSMS 206 (243)
Q Consensus 127 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~l~ 206 (243)
++++.++... ..++.+++..++.++++||+|||+++++|++|+|++||++|+|+++|++++.+...++++++++||
T Consensus 262 d~l~~ll~~~----~~~~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~~~~~~~~lp 337 (489)
T PLN02936 262 SVLRFLLASR----EEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQGRPPTYEDIKELK 337 (489)
T ss_pred HHHHHHHhcc----ccCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCHHHHhhCH
Confidence 4566666432 237899999999999999999999999999999999999999999999999886558999999999
Q ss_pred hHHHHHHHHhccCCCccCCccccc-----ccCCCCCCcccc
Q psy16032 207 YLAACINETHRYRTIVTLGTPDQV-----YLSSGLPDSERL 242 (243)
Q Consensus 207 yl~~~i~E~lR~~p~~~~~~~r~~-----~~~~~ipg~~~~ 242 (243)
|++|||+|+||++|+++...+|.+ ..|+.||.|+.+
T Consensus 338 yl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v 378 (489)
T PLN02936 338 YLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDI 378 (489)
T ss_pred HHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEE
Confidence 999999999999999998887764 356778877764
No 25
>PLN02655 ent-kaurene oxidase
Probab=99.87 E-value=2.2e-21 Score=166.91 Aligned_cols=112 Identities=28% Similarity=0.347 Sum_probs=99.0
Q ss_pred hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCCCChhhhcCCh
Q psy16032 127 TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDITSMS 206 (243)
Q Consensus 127 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~l~ 206 (243)
|+++.++... ..++++++..++.++++||+|||+++++|++++|++||++|+|+++|++++.++..++++++++||
T Consensus 246 d~l~~ll~~~----~~ls~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~l~~l~ 321 (466)
T PLN02655 246 CYLDFLLSEA----THLTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGDERVTEEDLPNLP 321 (466)
T ss_pred cHHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCHHHHhcCh
Confidence 5777777653 248999999999999999999999999999999999999999999999999987559999999999
Q ss_pred hHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 207 YLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 207 yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
|+++||+|+||++|+++...+|.+. .|+.||.|+.+
T Consensus 322 yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v 362 (466)
T PLN02655 322 YLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQI 362 (466)
T ss_pred HHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEE
Confidence 9999999999999999988788764 55667766654
No 26
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.86 E-value=6.1e-21 Score=165.27 Aligned_cols=115 Identities=20% Similarity=0.253 Sum_probs=99.1
Q ss_pred hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCC----C-CChhh
Q psy16032 127 TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGT----I-VTLDD 201 (243)
Q Consensus 127 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~----~-~~~~~ 201 (243)
|+++.++....+++..++++++..++..+++||+|||+.+++|+++.|++||++|+|+++|++++.++. . +++++
T Consensus 267 d~l~~ll~~~~~~~~~~~~~~i~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~~ 346 (490)
T PLN02302 267 DMLDLLLDAEDENGRKLDDEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLKD 346 (490)
T ss_pred CHHHHHHhhhccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHHH
Confidence 688888876544444589999999999999999999999999999999999999999999999987642 2 78999
Q ss_pred hcCChhHHHHHHHHhccCCCccCCccccc-----ccCCCCCCcccc
Q psy16032 202 ITSMSYLAACINETHRYRTIVTLGTPDQV-----YLSSGLPDSERL 242 (243)
Q Consensus 202 ~~~l~yl~~~i~E~lR~~p~~~~~~~r~~-----~~~~~ipg~~~~ 242 (243)
+++|||+++||+|+||++|+++.. +|.+ ..|+.||.|+.+
T Consensus 347 l~~lpyl~a~i~E~lRl~p~~~~~-~R~~~~d~~~~g~~Ip~Gt~v 391 (490)
T PLN02302 347 VRKMEYLSQVIDETLRLINISLTV-FREAKTDVEVNGYTIPKGWKV 391 (490)
T ss_pred HhcChHHHHHHHHHHHhCCCcccc-hhcccCCEeECCEEECCCCEE
Confidence 999999999999999999999974 5654 467788877754
No 27
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.85 E-value=1.2e-20 Score=161.87 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=94.5
Q ss_pred hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcC----CCC-CChhh
Q psy16032 127 TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSS----GTI-VTLDD 201 (243)
Q Consensus 127 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~----~~~-~~~~~ 201 (243)
|+++.++... +..++++++...+..+++||+|||+.+++|++++|++||++|+|+++|++++.+ ... ++.++
T Consensus 234 d~l~~ll~~~---~~~l~~~~i~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~ 310 (452)
T PLN03141 234 DVVDVLLRDG---SDELTDDLISDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWTD 310 (452)
T ss_pred hHHHHHHhcC---CCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHH
Confidence 5677666542 234899999999999999999999999999999999999999999999988753 223 89999
Q ss_pred hcCChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 202 ITSMSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 202 ~~~l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
+.+|||++|||+|+||++|+++ +++|.+. .|+.||.|+.+
T Consensus 311 ~~~lpyl~avi~E~lRl~p~~~-~~~R~~~~d~~l~g~~IPkG~~V 355 (452)
T PLN03141 311 YMSLPFTQNVITETLRMGNIIN-GVMRKAMKDVEIKGYLIPKGWCV 355 (452)
T ss_pred HhccHHHHHHHHHHHhccCCcC-CcceeecCCeeECCEEECCCCEE
Confidence 9999999999999999999997 4678754 66677766643
No 28
>KOG0158|consensus
Probab=99.85 E-value=6e-22 Score=167.48 Aligned_cols=95 Identities=32% Similarity=0.543 Sum_probs=77.2
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCC----CCCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccCCCCcc
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQ----DKLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISPLSSVR 75 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~----~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 75 (243)
.|.++++++||||++||||++|+||||.+ ..++..|+|||.|+|.|+|++||.+++++.++.+++ |++++...+.
T Consensus 394 ~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~ 473 (499)
T KOG0158|consen 394 PVMIPTYALHHDPEYWPEPEKFKPERFEEENNKSRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTI 473 (499)
T ss_pred EEEeecccccCCcccCCCcccCCCccCCCCcccccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCccc
Confidence 47899999999999999999999999997 236789999999999999999999999999999999 9998443333
Q ss_pred ccccccc---ceeccCcc-cccccCC
Q psy16032 76 LATYYQV---DLTLTPDQ-IHLSGLP 97 (243)
Q Consensus 76 ~~~~~~~---~~~~~p~~-~~~~~~~ 97 (243)
+. ... +..+.|.. +++.+.+
T Consensus 474 ~~--~~~~~~~~~l~pk~gi~Lkl~~ 497 (499)
T KOG0158|consen 474 IP--LEGDPKGFTLSPKGGIWLKLEP 497 (499)
T ss_pred Cc--ccCCccceeeecCCceEEEEEe
Confidence 33 333 55566663 5555444
No 29
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.85 E-value=1.7e-20 Score=161.31 Aligned_cols=130 Identities=20% Similarity=0.273 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHH------hhhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHH
Q psy16032 108 LARMIATLFLSNLIKQYR------VTYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQ 181 (243)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~ 181 (243)
.+.....+++.+.+++++ .|+++.++.. +..++++++.+.+.++++||+|||+++++|+++.|++||++|
T Consensus 223 ~a~~~~~~~~~~~i~~~~~~~~~~~d~l~~ll~~----~~~l~~~ei~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq 298 (463)
T PLN02196 223 KARKELAQILAKILSKRRQNGSSHNDLLGSFMGD----KEGLTDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVL 298 (463)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHhc----CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHH
Confidence 344455556666665543 3577777642 234899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCC---CC-CChhhhcCChhHHHHHHHHhccCCCccCCccccc-----ccCCCCCCcccc
Q psy16032 182 DTLRAEITSKSSG---TI-VTLDDITSMSYLAACINETHRYRTIVTLGTPDQV-----YLSSGLPDSERL 242 (243)
Q Consensus 182 ~~l~~Ei~~~~~~---~~-~~~~~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~-----~~~~~ipg~~~~ 242 (243)
+|+++|++++.+. .. ++.+++.+|||++|||+|+||++|++++.. |.+ ..|+.||.|+.+
T Consensus 299 ~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~avi~EtlRl~p~~~~~~-R~~~~d~~i~g~~IpkGt~v 367 (463)
T PLN02196 299 EAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRVASILSFTF-REAVEDVEYEGYLIPKGWKV 367 (463)
T ss_pred HHHHHHHHHHhcccccCCCCCHHHHhcChHHHHHHHHHHhcCCCccccc-eeeccccccCCEEeCCCCEE
Confidence 9999999988764 23 899999999999999999999999999864 554 357778887764
No 30
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.83 E-value=6.8e-20 Score=157.60 Aligned_cols=111 Identities=16% Similarity=0.227 Sum_probs=94.9
Q ss_pred hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcC---CCC-CChhhh
Q psy16032 127 TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSS---GTI-VTLDDI 202 (243)
Q Consensus 127 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~---~~~-~~~~~~ 202 (243)
|+++.++... ..++++++...+..+++||+|||+.+++|+++.|++||++|+|+++|++++.+ +.. ++++++
T Consensus 251 d~l~~ll~~~----~~~~~~ei~~~~~~l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l 326 (472)
T PLN02987 251 DMLAALLASD----DGFSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDY 326 (472)
T ss_pred cHHHHHHhcC----CCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhChHHHHHHHHHHHHHHcccCCCCCCCHHHH
Confidence 5777777542 24899999999999999999999999999999999999999999999998874 223 889999
Q ss_pred cCChhHHHHHHHHhccCCCccCCcccccc-----cCCCCCCcccc
Q psy16032 203 TSMSYLAACINETHRYRTIVTLGTPDQVY-----LSSGLPDSERL 242 (243)
Q Consensus 203 ~~l~yl~~~i~E~lR~~p~~~~~~~r~~~-----~~~~ipg~~~~ 242 (243)
.+|||+++|++|+||++|+++. ++|.+. .|+.||.|+.+
T Consensus 327 ~~lpyl~a~i~EtLRl~p~~~~-~~R~~~~d~~~~G~~ip~Gt~v 370 (472)
T PLN02987 327 KSMPFTQCVVNETLRVANIIGG-IFRRAMTDIEVKGYTIPKGWKV 370 (472)
T ss_pred hcChHHHHHHHHHHHccCCcCC-ccccCCCCeeECCEEECCCCEE
Confidence 9999999999999999999984 566654 56778877754
No 31
>KOG0684|consensus
Probab=99.83 E-value=8.7e-20 Score=149.07 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCH
Q psy16032 106 GELARMIATLFLSNLIKQYRV-------TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQ 178 (243)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p 178 (243)
+..+++...+.+...+.++++ |++++++. ...++...+++++....+.+++||+.||+.+..|++++|++||
T Consensus 226 ~~ra~~~i~k~f~~~i~~rr~s~s~~~~dmlq~l~~-~y~dg~~~te~e~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~P 304 (486)
T KOG0684|consen 226 RDRARKKISKIFSKIILDRRASISKWDNDMLQSLME-KYKDGRPTTEEEIAGLLIGLLWAGQHNSSPTSFWTLAYLLRHP 304 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH-HhhcCCcCcHHHHHHHHHHHHHhccccccHHHHHHHHHHhhCH
Confidence 335555556666666655554 46677776 4455667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC--CChhhhcCChhHHHHHHHHhccCCCccCCcccccc---------cCCCCCCcccc
Q psy16032 179 DVQDTLRAEITSKSSGTI--VTLDDITSMSYLAACINETHRYRTIVTLGTPDQVY---------LSSGLPDSERL 242 (243)
Q Consensus 179 ~~~~~l~~Ei~~~~~~~~--~~~~~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~~---------~~~~ipg~~~~ 242 (243)
|+++.+++|+.+++|... ++.+++++||.++.||+||||++||.+..+ |.+. +.|.||.|+.+
T Consensus 305 e~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~~~IkEtLRL~~p~~~~~-R~v~~D~tv~~~~~~Y~Ip~G~~v 378 (486)
T KOG0684|consen 305 EAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLDSCIKETLRLHPPAHSLM-RKVHEDLTVPGSDGEYVIPKGDIV 378 (486)
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHhcchHHHHHHHHHHhcCCchhhHH-HhhccceeeccCCcceecCCCCEE
Confidence 999999999999998876 899999999999999999999999988643 5543 34667767654
No 32
>PTZ00404 cytochrome P450; Provisional
Probab=99.81 E-value=2.2e-20 Score=161.46 Aligned_cols=96 Identities=27% Similarity=0.492 Sum_probs=76.0
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCCCCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccCCCCcccccc
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISPLSSVRLATY 79 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (243)
.|+++.+++||||++||||++|+||||++...+..|+|||+|+|.|+|+++|..|++.+++.+++ |+++..........
T Consensus 384 ~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~ 463 (482)
T PTZ00404 384 QILINYYSLGRNEKYFENPEQFDPSRFLNPDSNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKKIDET 463 (482)
T ss_pred EEEeeHHHhhCCccccCCccccCccccCCCCCCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCCCCCcc
Confidence 37899999999999999999999999998667789999999999999999999999999999999 99984322222222
Q ss_pred cccceeccCcccccccC
Q psy16032 80 YQVDLTLTPDQIHLSGL 96 (243)
Q Consensus 80 ~~~~~~~~p~~~~~~~~ 96 (243)
...++...|..+++.+.
T Consensus 464 ~~~~~~~~~~~~~v~~~ 480 (482)
T PTZ00404 464 EEYGLTLKPNKFKVLLE 480 (482)
T ss_pred cccceeecCCCceeeee
Confidence 23344444555554443
No 33
>KOG0156|consensus
Probab=99.79 E-value=7.1e-20 Score=156.36 Aligned_cols=80 Identities=33% Similarity=0.564 Sum_probs=70.0
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCCC----CCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccCCCCcc
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDK----LPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISPLSSVR 75 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~~----~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 75 (243)
+|++++|++||||++|+||++|+||||++.. ....++|||.|+|+|+|..+|+.++.++++++++ |+|++.++ .
T Consensus 386 ~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~-~ 464 (489)
T KOG0156|consen 386 TVLVNLWAIHRDPKVWEDPEEFKPERFLDSNDGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG-K 464 (489)
T ss_pred EEEEeehhhhcCCccCCCccccChhhhcCCccccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC-C
Confidence 4889999999999999999999999999853 5789999999999999999999999999999999 99994433 4
Q ss_pred cccccc
Q psy16032 76 LATYYQ 81 (243)
Q Consensus 76 ~~~~~~ 81 (243)
.++...
T Consensus 465 ~d~~e~ 470 (489)
T KOG0156|consen 465 VDMEEA 470 (489)
T ss_pred CCCccc
Confidence 444333
No 34
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.79 E-value=1.5e-19 Score=157.11 Aligned_cols=98 Identities=26% Similarity=0.409 Sum_probs=77.7
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCCC-------CCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccC-C
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDK-------LPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISP-L 71 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~~-------~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~-~ 71 (243)
.|+++.|++||||++|+||++|+||||++.. ....++|||+|+|+|+|+++|..|++.+++.+++ |++.+ .
T Consensus 393 ~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~ 472 (503)
T PLN02394 393 KILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPP 472 (503)
T ss_pred EEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCC
Confidence 3789999999999999999999999998521 2467999999999999999999999999999999 99983 3
Q ss_pred CCcccccccccc-eec-cCcccccccCCC
Q psy16032 72 SSVRLATYYQVD-LTL-TPDQIHLSGLPD 98 (243)
Q Consensus 72 ~~~~~~~~~~~~-~~~-~p~~~~~~~~~~ 98 (243)
+....+.....+ +.. .|..+++.+.+|
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 501 (503)
T PLN02394 473 GQSKIDVSEKGGQFSLHIAKHSTVVFKPR 501 (503)
T ss_pred CCCcCccccccCceeeccCCCceEEeecC
Confidence 322233343343 444 666777776665
No 35
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=1e-18 Score=147.84 Aligned_cols=120 Identities=23% Similarity=0.237 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHH
Q psy16032 106 GELARMIATLFLSNLIKQYRV----TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQ 181 (243)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~ 181 (243)
...+.....+++...+++++. |+++.++...++++..++++|+.++++++++||+|||+++++|++|.|++||+++
T Consensus 191 ~~~a~~~~~~~~~~li~~rR~~~~~dlls~l~~a~~~~~~~lsd~Ei~~~~~~ll~AGheTTa~~l~~a~~~L~~~P~~~ 270 (411)
T COG2124 191 ARAARRELDAYLRALIAERRAAPRDDLLSLLLSAEDDGGGRLSDDEIRDELITLLVAGHETTANALAWALYALLRHPDQL 270 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCchHH
Confidence 345566667788888888764 6888888887766556999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCChhhhcCChhHHHHHHHHhccCCCccCCccccccc-----CCCCCCccc
Q psy16032 182 DTLRAEITSKSSGTIVTLDDITSMSYLAACINETHRYRTIVTLGTPDQVYL-----SSGLPDSER 241 (243)
Q Consensus 182 ~~l~~Ei~~~~~~~~~~~~~~~~l~yl~~~i~E~lR~~p~~~~~~~r~~~~-----~~~ipg~~~ 241 (243)
+++++|.+. ||++++|+|+||++||++. ++|.+.+ |+.||-|+.
T Consensus 271 ~~l~~e~~~---------------~~~~~~v~E~LR~~ppv~~-~~R~~~~d~~igg~~Ip~G~~ 319 (411)
T COG2124 271 AKLRAEPDR---------------PLLEAVVEETLRLYPPVPL-ARRVATEDVELGGYRIPAGTV 319 (411)
T ss_pred HHHHhCcch---------------HHHHHHHHHHHHhCCchhc-cceeccCCEeeCCEEeCCCCE
Confidence 999998753 7899999999999999998 7888754 456665554
No 36
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.79 E-value=1e-19 Score=157.64 Aligned_cols=95 Identities=16% Similarity=0.327 Sum_probs=73.5
Q ss_pred CEecchhhhhcCCCCC-CCCCCccCCCCCCC------CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccCCC
Q psy16032 1 MVIPFLYSIHMNGEAH-QEPHRFDPGRFLQD------KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISPLS 72 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~-~~p~~f~p~R~~~~------~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~~~ 72 (243)
.|++++|++||||++| +||++|+||||++. ..++.|+|||+|+|+|+|++||..|++++++.+++ |+++...
T Consensus 395 ~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~ 474 (500)
T PLN02169 395 KIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIE 474 (500)
T ss_pred EEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcC
Confidence 3789999999999999 89999999999862 23678999999999999999999999999999999 9998432
Q ss_pred CcccccccccceeccCc-ccccccCC
Q psy16032 73 SVRLATYYQVDLTLTPD-QIHLSGLP 97 (243)
Q Consensus 73 ~~~~~~~~~~~~~~~p~-~~~~~~~~ 97 (243)
... .....++++.|. .+++.+.+
T Consensus 475 ~~~--~~~~~~~~l~~~~gl~l~l~~ 498 (500)
T PLN02169 475 GHK--IEAIPSILLRMKHGLKVTVTK 498 (500)
T ss_pred CCC--cccccceEEecCCCEEEEEEe
Confidence 211 122334444444 45544443
No 37
>PLN02971 tryptophan N-hydroxylase
Probab=99.78 E-value=1.8e-19 Score=157.68 Aligned_cols=98 Identities=23% Similarity=0.350 Sum_probs=78.1
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCC-------CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eecc-CC
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD-------KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPIS-PL 71 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~-------~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~-~~ 71 (243)
+|++++|++||||++|+||++|+||||++. ..+..|+|||+|+|.|+|+++|..|++++++.+++ |+++ +.
T Consensus 427 ~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~ 506 (543)
T PLN02971 427 QVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAG 506 (543)
T ss_pred EEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCC
Confidence 488999999999999999999999999962 23568999999999999999999999999999999 9998 33
Q ss_pred CCcccccccccceeccCcccccccCCC
Q psy16032 72 SSVRLATYYQVDLTLTPDQIHLSGLPD 98 (243)
Q Consensus 72 ~~~~~~~~~~~~~~~~p~~~~~~~~~~ 98 (243)
+....++....+....+.++.+.+.+|
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (543)
T PLN02971 507 SETRVELMESSHDMFLSKPLVMVGELR 533 (543)
T ss_pred CCCCcchhhhcCcccccccceeeeeec
Confidence 333445544445222455666666665
No 38
>KOG0157|consensus
Probab=99.77 E-value=1.8e-19 Score=155.69 Aligned_cols=96 Identities=29% Similarity=0.584 Sum_probs=76.1
Q ss_pred CEecchhhhhcCCCCCC-CCCCccCCCCCC-----CCCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccCCCC
Q psy16032 1 MVIPFLYSIHMNGEAHQ-EPHRFDPGRFLQ-----DKLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISPLSS 73 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~-~p~~f~p~R~~~-----~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~~~~ 73 (243)
.|++++|++|||+++|+ ||++||||||++ ..++++|+|||+|+|.|+|++||.+|++.+++.+++ |++++..+
T Consensus 392 ~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~ 471 (497)
T KOG0157|consen 392 NVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGG 471 (497)
T ss_pred EEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCC
Confidence 37899999999999997 999999999996 234789999999999999999999999999999999 99984432
Q ss_pred cccccccccceeccCc-ccccccCCC
Q psy16032 74 VRLATYYQVDLTLTPD-QIHLSGLPD 98 (243)
Q Consensus 74 ~~~~~~~~~~~~~~p~-~~~~~~~~~ 98 (243)
.. ......+.+.|. .+++.+.++
T Consensus 472 ~~--~~~~~~~~l~~~~gl~v~~~~r 495 (497)
T KOG0157|consen 472 DK--PKPVPELTLRPKNGLKVKLRPR 495 (497)
T ss_pred CC--ceeeeEEEEEecCCeEEEEEeC
Confidence 21 334444555554 455555443
No 39
>PLN00168 Cytochrome P450; Provisional
Probab=99.76 E-value=5.1e-19 Score=154.20 Aligned_cols=70 Identities=26% Similarity=0.477 Sum_probs=63.8
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCC----------CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eecc
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD----------KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPIS 69 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~----------~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~ 69 (243)
+|+++++++||||++||||++|+||||++. ..++.|+|||+|+|+|+|++||..|++++++.+++ |+++
T Consensus 407 ~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~ 486 (519)
T PLN00168 407 TVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWK 486 (519)
T ss_pred EEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccce
Confidence 478999999999999999999999999852 12457999999999999999999999999999999 9998
Q ss_pred C
Q psy16032 70 P 70 (243)
Q Consensus 70 ~ 70 (243)
+
T Consensus 487 ~ 487 (519)
T PLN00168 487 E 487 (519)
T ss_pred e
Confidence 4
No 40
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.76 E-value=5.8e-19 Score=153.20 Aligned_cols=98 Identities=21% Similarity=0.406 Sum_probs=76.9
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCCC--------CCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccCC
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDK--------LPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISPL 71 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~~--------~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~~ 71 (243)
.|++++|++||||++|+||++|+||||++.. ..+.++|||+|+|.|+|+++|..|++++++.+++ |+++..
T Consensus 389 ~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~ 468 (504)
T PLN00110 389 RLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLP 468 (504)
T ss_pred EEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecC
Confidence 3789999999999999999999999998621 1257999999999999999999999999999999 999843
Q ss_pred CCcccccccccceeccCc-ccccccCCC
Q psy16032 72 SSVRLATYYQVDLTLTPD-QIHLSGLPD 98 (243)
Q Consensus 72 ~~~~~~~~~~~~~~~~p~-~~~~~~~~~ 98 (243)
...........++...|. ++++.+.++
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r 496 (504)
T PLN00110 469 DGVELNMDEAFGLALQKAVPLSAMVTPR 496 (504)
T ss_pred CCCccCcccccccccccCCCceEeeccC
Confidence 322233223345555454 677777666
No 41
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.76 E-value=5.5e-19 Score=150.84 Aligned_cols=70 Identities=37% Similarity=0.711 Sum_probs=62.6
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCC-----CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccC
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD-----KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISP 70 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~-----~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~ 70 (243)
.|+++++++||||++|+||++|+||||++. .....|+|||.|+|.|+|+++|..+++++++.++. |++++
T Consensus 362 ~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~ 437 (463)
T PF00067_consen 362 IVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFEL 437 (463)
T ss_dssp EEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEE
Confidence 378999999999999999999999999984 45789999999999999999999999999999999 99994
No 42
>PLN02500 cytochrome P450 90B1
Probab=99.76 E-value=6.7e-19 Score=152.51 Aligned_cols=70 Identities=30% Similarity=0.637 Sum_probs=64.2
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCCC-----------CCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eec
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDK-----------LPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPI 68 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~~-----------~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~ 68 (243)
+|++++|++||||++|+||++|+||||++.. .++.|+|||+|+|.|+|+++|..|++++++.+++ |++
T Consensus 383 ~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~ 462 (490)
T PLN02500 383 KVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNW 462 (490)
T ss_pred EEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEE
Confidence 4789999999999999999999999998621 3578999999999999999999999999999999 999
Q ss_pred cC
Q psy16032 69 SP 70 (243)
Q Consensus 69 ~~ 70 (243)
+.
T Consensus 463 ~~ 464 (490)
T PLN02500 463 EL 464 (490)
T ss_pred EE
Confidence 83
No 43
>PLN03018 homomethionine N-hydroxylase
Probab=99.75 E-value=1.3e-18 Score=151.65 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=77.4
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCC----------CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eecc
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD----------KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPIS 69 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~----------~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~ 69 (243)
.|++++|++||||++|+||++|+||||++. ..+..++|||+|+|.|+|+++|..+++++++.+++ |+++
T Consensus 414 ~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~ 493 (534)
T PLN03018 414 HIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWK 493 (534)
T ss_pred EEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEE
Confidence 478999999999999999999999999852 13468999999999999999999999999999999 9998
Q ss_pred CCCCc-ccccccccceeccCcccccccCCC
Q psy16032 70 PLSSV-RLATYYQVDLTLTPDQIHLSGLPD 98 (243)
Q Consensus 70 ~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~ 98 (243)
..... ........+....|.++++.+.+|
T Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~~v~~~~R 523 (534)
T PLN03018 494 LHQDFGPLSLEEDDASLLMAKPLLLSVEPR 523 (534)
T ss_pred eCCCCCCCCccccccceecCCCeEEEEEec
Confidence 32221 222222234455566777777776
No 44
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.75 E-value=1.2e-18 Score=151.03 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=75.4
Q ss_pred CEecchhhhhcCCCCC-CCCCCccCCCCCCC-----CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccCCCC
Q psy16032 1 MVIPFLYSIHMNGEAH-QEPHRFDPGRFLQD-----KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISPLSS 73 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~-~~p~~f~p~R~~~~-----~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~~~~ 73 (243)
.|.++.|++||||++| |||++|+||||++. ..+..++|||+|+|.|+|+++|..|++.+++.+++ |+++....
T Consensus 394 ~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~ 473 (502)
T PLN02426 394 RVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGR 473 (502)
T ss_pred EEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecC
Confidence 3788999999999999 99999999999962 23567999999999999999999999999999999 99984221
Q ss_pred cccccccccceeccCc-ccccccCCC
Q psy16032 74 VRLATYYQVDLTLTPD-QIHLSGLPD 98 (243)
Q Consensus 74 ~~~~~~~~~~~~~~p~-~~~~~~~~~ 98 (243)
.........++...|. .+++.+.++
T Consensus 474 ~~~~~~~~~~~~~~~~~gl~v~~~~r 499 (502)
T PLN02426 474 SNRAPRFAPGLTATVRGGLPVRVRER 499 (502)
T ss_pred CCCCCcccceeEEecCCCEEEEEEEc
Confidence 1112233334555555 455555544
No 45
>PLN02738 carotene beta-ring hydroxylase
Probab=99.74 E-value=1.8e-18 Score=153.07 Aligned_cols=97 Identities=14% Similarity=0.307 Sum_probs=73.8
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCC-------CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccCCC
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD-------KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISPLS 72 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~-------~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~~~ 72 (243)
.|++++|.+||||++||||++|+||||+.. .....|+|||.|+|.|+|++||..|++++++.+++ |+++...
T Consensus 489 ~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~ 568 (633)
T PLN02738 489 DIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAP 568 (633)
T ss_pred EEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCC
Confidence 378999999999999999999999999841 13468999999999999999999999999999999 9998332
Q ss_pred CcccccccccceeccC-cccccccCCC
Q psy16032 73 SVRLATYYQVDLTLTP-DQIHLSGLPD 98 (243)
Q Consensus 73 ~~~~~~~~~~~~~~~p-~~~~~~~~~~ 98 (243)
... ......+....| ..+++.+.++
T Consensus 569 ~~~-~~~~~~~~~~~p~~~l~v~l~~R 594 (633)
T PLN02738 569 GAP-PVKMTTGATIHTTEGLKMTVTRR 594 (633)
T ss_pred CCC-CcccccceEEeeCCCcEEEEEEC
Confidence 211 122222333433 3556655554
No 46
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.74 E-value=1.8e-18 Score=150.28 Aligned_cols=89 Identities=20% Similarity=0.378 Sum_probs=71.3
Q ss_pred CEecchhhhhcCCCCC-CCCCCccCCCCCCC-------CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eecc-C
Q psy16032 1 MVIPFLYSIHMNGEAH-QEPHRFDPGRFLQD-------KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPIS-P 70 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~-~~p~~f~p~R~~~~-------~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~-~ 70 (243)
.|++++|++||||++| +||++|+||||++. ..+..++|||+|+|.|+|+++|..+++++++.+++ |+++ +
T Consensus 388 ~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~ 467 (499)
T PLN03234 388 IIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLP 467 (499)
T ss_pred EEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCC
Confidence 3789999999999999 89999999999862 13568999999999999999999999999999999 9998 3
Q ss_pred CCCc--ccccccccceeccCc
Q psy16032 71 LSSV--RLATYYQVDLTLTPD 89 (243)
Q Consensus 71 ~~~~--~~~~~~~~~~~~~p~ 89 (243)
.+.. ........++...|+
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~ 488 (499)
T PLN03234 468 KGIKPEDIKMDVMTGLAMHKK 488 (499)
T ss_pred CCCCCCCCCcccccccccccC
Confidence 3311 223334445555444
No 47
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.74 E-value=1.8e-18 Score=148.44 Aligned_cols=70 Identities=31% Similarity=0.617 Sum_probs=64.9
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCC-CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccC
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD-KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISP 70 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~-~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~ 70 (243)
.|+++++++||||++|+||++|+||||++. ..+..|+|||+|+|.|+|+++|..|++++++.+++ |+++.
T Consensus 354 ~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~ 425 (452)
T PLN03141 354 CVLAYFRSVHLDEENYDNPYQFNPWRWQEKDMNNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVA 425 (452)
T ss_pred EEEEehHhccCCchhcCCccccCcccccCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeec
Confidence 478999999999999999999999999973 34678999999999999999999999999999999 99984
No 48
>PLN02183 ferulate 5-hydroxylase
Probab=99.74 E-value=2.1e-18 Score=150.34 Aligned_cols=69 Identities=26% Similarity=0.490 Sum_probs=63.7
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCC------CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eecc
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD------KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPIS 69 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~------~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~ 69 (243)
+|+++.|++||||++|+||++|+||||++. ...+.|+|||+|+|.|+|+++|..|++++++.+++ |+++
T Consensus 403 ~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~ 478 (516)
T PLN02183 403 RVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWE 478 (516)
T ss_pred EEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEE
Confidence 488999999999999999999999999962 13468999999999999999999999999999999 9998
No 49
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.74 E-value=1.2e-18 Score=151.95 Aligned_cols=69 Identities=26% Similarity=0.457 Sum_probs=63.1
Q ss_pred EecchhhhhcCCCCC-CCCCCccCCCCCCC-----CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccC
Q psy16032 2 VIPFLYSIHMNGEAH-QEPHRFDPGRFLQD-----KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISP 70 (243)
Q Consensus 2 v~~~~~~~~~~~~~~-~~p~~f~p~R~~~~-----~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~ 70 (243)
|++++|++||||++| +||++|+||||++. ..++.|+|||+|+|.|+|+++|..|++++++.+++ |+++.
T Consensus 413 V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~ 488 (516)
T PLN03195 413 VTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQL 488 (516)
T ss_pred EEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEe
Confidence 778999999999999 99999999999852 23567999999999999999999999999999999 99883
No 50
>PLN02655 ent-kaurene oxidase
Probab=99.73 E-value=3.6e-18 Score=147.10 Aligned_cols=97 Identities=26% Similarity=0.349 Sum_probs=75.4
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCC----CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccCCCCcc
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD----KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISPLSSVR 75 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~----~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 75 (243)
.|+++.+++||||++|+||++|+||||++. .....++|||+|+|.|+|+++|..+++.+++.++. |+++...+..
T Consensus 361 ~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~ 440 (466)
T PLN02655 361 QIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDE 440 (466)
T ss_pred EEEecHHHhcCCcccCCChhccCccccCCCCcccCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCc
Confidence 378999999999999999999999999973 23578999999999999999999999999999999 9998322111
Q ss_pred cccccccceeccCc-ccccccCCC
Q psy16032 76 LATYYQVDLTLTPD-QIHLSGLPD 98 (243)
Q Consensus 76 ~~~~~~~~~~~~p~-~~~~~~~~~ 98 (243)
. .....++...|. ++++.+.++
T Consensus 441 ~-~~~~~~~~~~~~~~~~~~~~~r 463 (466)
T PLN02655 441 E-KEDTVQLTTQKLHPLHAHLKPR 463 (466)
T ss_pred c-ccchhheeEeecCCcEEEEeec
Confidence 1 122345545443 566555544
No 51
>PLN02290 cytokinin trans-hydroxylase
Probab=99.73 E-value=2.6e-18 Score=149.75 Aligned_cols=70 Identities=27% Similarity=0.494 Sum_probs=63.9
Q ss_pred CEecchhhhhcCCCCC-CCCCCccCCCCCCC--CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccC
Q psy16032 1 MVIPFLYSIHMNGEAH-QEPHRFDPGRFLQD--KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISP 70 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~-~~p~~f~p~R~~~~--~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~ 70 (243)
.|+++.|++||||++| +||++|+||||+.. .....|+|||+|+|.|+|+.+|..+++++++.+++ |+++.
T Consensus 414 ~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~ 487 (516)
T PLN02290 414 SIWIPVLAIHHSEELWGKDANEFNPDRFAGRPFAPGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTI 487 (516)
T ss_pred EEEecHHHhcCChhhhCCChhhcCccccCCCCCCCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEee
Confidence 3789999999999999 89999999999963 23467999999999999999999999999999999 99984
No 52
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.72 E-value=3.9e-18 Score=146.73 Aligned_cols=70 Identities=33% Similarity=0.653 Sum_probs=65.9
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCCCCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccC
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISP 70 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~ 70 (243)
.|+++++++||||++|+||++|+||||+....+..++|||+|+|.|+|+++|..+++.+++.+++ |+++.
T Consensus 366 ~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~ 436 (463)
T PLN02196 366 KVLPLFRNIHHSADIFSDPGKFDPSRFEVAPKPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSI 436 (463)
T ss_pred EEEeeHHHhcCCchhcCCcCccChhhhcCCCCCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEE
Confidence 37889999999999999999999999998666789999999999999999999999999999999 99983
No 53
>PLN02966 cytochrome P450 83A1
Probab=99.72 E-value=4.6e-18 Score=147.68 Aligned_cols=70 Identities=26% Similarity=0.466 Sum_probs=64.2
Q ss_pred CEecchhhhhcCCCCC-CCCCCccCCCCCCC-----CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccC
Q psy16032 1 MVIPFLYSIHMNGEAH-QEPHRFDPGRFLQD-----KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISP 70 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~-~~p~~f~p~R~~~~-----~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~ 70 (243)
+|++++|++||||++| |||++|+||||++. ..+..|+|||+|+|.|+|++||..+++++++.+++ |+++.
T Consensus 391 ~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~ 467 (502)
T PLN02966 391 TVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKL 467 (502)
T ss_pred EEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeC
Confidence 4789999999999999 99999999999862 23568999999999999999999999999999999 99983
No 54
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.72 E-value=6.6e-18 Score=147.18 Aligned_cols=100 Identities=20% Similarity=0.301 Sum_probs=76.6
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCC-C--------CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccC
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQ-D--------KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISP 70 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~-~--------~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~ 70 (243)
.|.++.|++||||++|+||++|+||||.. . .....++|||+|+|.|+|+++|..+++.+++.++. |+++.
T Consensus 396 ~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~ 475 (514)
T PLN03112 396 RVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSP 475 (514)
T ss_pred EEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeec
Confidence 37889999999999999999999999754 1 12457999999999999999999999999999999 99984
Q ss_pred CCCc-c--cccccccceecc-CcccccccCCCCC
Q psy16032 71 LSSV-R--LATYYQVDLTLT-PDQIHLSGLPDGK 100 (243)
Q Consensus 71 ~~~~-~--~~~~~~~~~~~~-p~~~~~~~~~~~~ 100 (243)
.... . .......++... +..+++.+.+|..
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 509 (514)
T PLN03112 476 PDGLRPEDIDTQEVYGMTMPKAKPLRAVATPRLA 509 (514)
T ss_pred CCCCCcccCCCccccCcccccCCCeEEEeecCCc
Confidence 3221 1 222233345443 3367777777643
No 55
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.72 E-value=5.7e-18 Score=147.60 Aligned_cols=70 Identities=24% Similarity=0.475 Sum_probs=63.7
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCC---------CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccC
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD---------KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISP 70 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~---------~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~ 70 (243)
.|.+++|++||||++|+||++|+||||++. ..+..++|||+|+|.|+|+++|..|++.+++.+++ |+++.
T Consensus 397 ~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~ 476 (517)
T PLN02687 397 TLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWEL 476 (517)
T ss_pred EEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceec
Confidence 478999999999999999999999999862 12457999999999999999999999999999999 99983
No 56
>PLN02648 allene oxide synthase
Probab=99.72 E-value=4.6e-17 Score=139.81 Aligned_cols=110 Identities=17% Similarity=0.093 Sum_probs=87.0
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHH-HhhccccchHHHHHHHHHHHhhCHH-HHHHHHHHHHhhcCC-CC-CChhhhcCCh
Q psy16032 131 AFLQEAKSNPEIYTSKQLYHLLGD-LFGASLDTSTILMRWFLLVMAMEQD-VQDTLRAEITSKSSG-TI-VTLDDITSMS 206 (243)
Q Consensus 131 ~ll~~~~~~~~~~~~~~~~~~~~~-l~~ag~~tt~~~l~~~l~~l~~~p~-~~~~l~~Ei~~~~~~-~~-~~~~~~~~l~ 206 (243)
.+++...+. .++++++.++++. +.+++++|++++++|++|+|++||+ +|+|+++|++.+.+. .. ++++++++||
T Consensus 257 ~ll~~~~~~--~l~~~ei~~~~l~~~~~~t~~~~~~~l~~~l~~L~~~p~~v~~klr~Ei~~~~~~~~~~~t~~~l~~l~ 334 (480)
T PLN02648 257 EALDLAEKF--GISREEALHNLLFVLGFNAFGGFKIFFPALLKWVGRAGEELQARLAEEVRSAVKAGGGGVTFAALEKMP 334 (480)
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCCCHHHHhcCH
Confidence 444443332 3899999998875 4456677777899999999999995 999999999999863 33 8999999999
Q ss_pred hHHHHHHHHhccCCCccCCccccc----cc----CCCCCCcccc
Q psy16032 207 YLAACINETHRYRTIVTLGTPDQV----YL----SSGLPDSERL 242 (243)
Q Consensus 207 yl~~~i~E~lR~~p~~~~~~~r~~----~~----~~~ipg~~~~ 242 (243)
|+++||+|+||++|++++..++.. .. |+.||.|+.+
T Consensus 335 yl~avi~EtLRl~p~v~~~~r~a~~d~~l~~~~~g~~IpkG~~V 378 (480)
T PLN02648 335 LVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEML 378 (480)
T ss_pred HHHHHHHHHHhhcCCcccccceecCCEEEecCCceEEECCCCEE
Confidence 999999999999999998654432 22 5778877654
No 57
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.72 E-value=6.4e-18 Score=146.48 Aligned_cols=70 Identities=29% Similarity=0.655 Sum_probs=64.7
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCC-CCCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccC
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQ-DKLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISP 70 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~-~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~ 70 (243)
.|+++.+++||||++|+||++|+||||++ ...+..++|||+|+|.|+|+++|..+++++++.+++ |++++
T Consensus 390 ~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~ 461 (490)
T PLN02302 390 KVLAWFRQVHMDPEVYPNPKEFDPSRWDNYTPKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLER 461 (490)
T ss_pred EEEeeHHHhcCCcccCCCccccChhhcCCCCCCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEE
Confidence 37889999999999999999999999997 345678999999999999999999999999999999 99984
No 58
>PLN02774 brassinosteroid-6-oxidase
Probab=99.71 E-value=6.6e-18 Score=145.32 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=63.5
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCCC--CCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccC
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDK--LPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISP 70 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~~--~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~ 70 (243)
.|+++++++||||++|+||++|+||||++.. ....++|||+|+|.|+|+++|..|++.+++.+++ |+++.
T Consensus 366 ~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~ 438 (463)
T PLN02774 366 RIYVYTREINYDPFLYPDPMTFNPWRWLDKSLESHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEE 438 (463)
T ss_pred EEEEehHHhcCCcccCCChhccCchhcCCCCcCCCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEE
Confidence 4789999999999999999999999999632 2346999999999999999999999999999999 99984
No 59
>PLN02936 epsilon-ring hydroxylase
Probab=99.70 E-value=1e-17 Score=145.07 Aligned_cols=96 Identities=22% Similarity=0.369 Sum_probs=73.5
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCCC-------CCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccCCC
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDK-------LPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISPLS 72 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~~-------~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~~~ 72 (243)
+|+++.+++||||++||||++|+||||+... .+..++|||+|+|.|+|+++|..+++.+++.+++ |+++...
T Consensus 377 ~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~ 456 (489)
T PLN02936 377 DIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVP 456 (489)
T ss_pred EEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecC
Confidence 4789999999999999999999999999521 2458999999999999999999999999999999 9998332
Q ss_pred CcccccccccceeccCc-ccccccCCC
Q psy16032 73 SVRLATYYQVDLTLTPD-QIHLSGLPD 98 (243)
Q Consensus 73 ~~~~~~~~~~~~~~~p~-~~~~~~~~~ 98 (243)
.... ....++...|. .+.+.+.+|
T Consensus 457 ~~~~--~~~~~~~~~~~~~~~v~~~~R 481 (489)
T PLN02936 457 DQDI--VMTTGATIHTTNGLYMTVSRR 481 (489)
T ss_pred CCcc--ceecceEEeeCCCeEEEEEee
Confidence 2211 11223334343 555555544
No 60
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.69 E-value=2.8e-17 Score=141.43 Aligned_cols=71 Identities=30% Similarity=0.539 Sum_probs=64.4
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCC----CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccCC
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD----KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISPL 71 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~----~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~~ 71 (243)
.|+++++++||||++|+||++|+||||++. .....++|||+|+|.|+|+++|..|++.+++.++. |++++.
T Consensus 369 ~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~ 444 (472)
T PLN02987 369 KVFASFRAVHLDHEYFKDARTFNPWRWQSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPA 444 (472)
T ss_pred EEEEehHHhhCCcccCCCccccCcccCCCCCCCCCCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEEC
Confidence 378899999999999999999999999962 23468999999999999999999999999999999 999843
No 61
>KOG0159|consensus
Probab=99.66 E-value=8.3e-17 Score=134.47 Aligned_cols=94 Identities=29% Similarity=0.525 Sum_probs=76.7
Q ss_pred EecchhhhhcCCCCCCCCCCccCCCCCCC----CCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eeccCCCCccc
Q psy16032 2 VIPFLYSIHMNGEAHQEPHRFDPGRFLQD----KLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPISPLSSVRL 76 (243)
Q Consensus 2 v~~~~~~~~~~~~~~~~p~~f~p~R~~~~----~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 76 (243)
|.++.|.+.+||++|++|++|+||||++. .++..++|||+|+|+|+|+++|..|+.+.++++++ |+++...+ .
T Consensus 417 V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~--~ 494 (519)
T KOG0159|consen 417 VVLFLYVLGRNPAYFPDPEEFLPERWLKPSTKTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHE--E 494 (519)
T ss_pred EEEeehhhccChhhCCCccccChhhhcccccCCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCC--C
Confidence 66889999999999999999999999983 36789999999999999999999999999999999 99883322 3
Q ss_pred ccccccceeccCc-ccccccCC
Q psy16032 77 ATYYQVDLTLTPD-QIHLSGLP 97 (243)
Q Consensus 77 ~~~~~~~~~~~p~-~~~~~~~~ 97 (243)
.......+.+.|. ++++.+.+
T Consensus 495 pv~~~~~~il~P~~~l~f~f~~ 516 (519)
T KOG0159|consen 495 PVEYVYRFILVPNRPLRFKFRP 516 (519)
T ss_pred CccceeEEEEcCCCCcceeeee
Confidence 3455556666675 45444443
No 62
>KOG0684|consensus
Probab=99.61 E-value=4.5e-16 Score=127.51 Aligned_cols=68 Identities=29% Similarity=0.543 Sum_probs=61.0
Q ss_pred EecchhhhhcCCCCCCCCCCccCCCCCCCC-------C--CCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eecc
Q psy16032 2 VIPFLYSIHMNGEAHQEPHRFDPGRFLQDK-------L--PAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPIS 69 (243)
Q Consensus 2 v~~~~~~~~~~~~~~~~p~~f~p~R~~~~~-------~--~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~ 69 (243)
|.++.+.+||||++||||+.|+|+||++.+ . .+.++|||+|++.|+|+.||..+++.++..++. |+++
T Consensus 378 valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdle 455 (486)
T KOG0684|consen 378 VALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLE 455 (486)
T ss_pred EEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHccee
Confidence 667778899999999999999999999611 1 345799999999999999999999999999999 9999
No 63
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.57 E-value=1.3e-15 Score=129.00 Aligned_cols=64 Identities=30% Similarity=0.572 Sum_probs=61.3
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCCCCCCCccccCCCcCCCCcHHHHHHHHHHHhhhhce-eecc
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNLNQ-IPIS 69 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~~~~~~~~~fg~G~r~C~G~~~a~~~~~~~~~~~~~-~~~~ 69 (243)
.|++++++.||||++|+||++|||+||. +.++|||+|+|.|+|..||+.|++++++.++. |++.
T Consensus 319 ~V~~~~~~anrDp~~f~~P~~F~p~R~~-----~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~ 383 (411)
T COG2124 319 VVLLSIGAANRDPEVFPDPDEFDPERFN-----NAHLPFGGGPHRCLGAALARLELKVALAELLRRFPLL 383 (411)
T ss_pred EEEecHhhhcCChhhCCChhhcCCCCCC-----CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHhCchh
Confidence 3789999999999999999999999988 88999999999999999999999999999999 8877
No 64
>PLN02648 allene oxide synthase
Probab=99.52 E-value=1.2e-14 Score=125.07 Aligned_cols=69 Identities=20% Similarity=0.492 Sum_probs=58.7
Q ss_pred CEecchhhhhcCCCCCCCCCCccCCCCCCC--CCCCCcccc---------CCCcCCCCcHHHHHHHHHHHhhhhce-ee-
Q psy16032 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD--KLPAQFMPF---------QVGKRMCMGGELARMIATLFLSNLNQ-IP- 67 (243)
Q Consensus 1 ~v~~~~~~~~~~~~~~~~p~~f~p~R~~~~--~~~~~~~~f---------g~G~r~C~G~~~a~~~~~~~~~~~~~-~~- 67 (243)
.|+++.+.+||||++|+||++|+|+||++. .....+++| |+|+|.|+|++||..|++++++.++. |+
T Consensus 377 ~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~ 456 (480)
T PLN02648 377 MLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGEKLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDS 456 (480)
T ss_pred EEEEChHHHhCCcccCCCcceeCCCCCCCCCccccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCE
Confidence 377899999999999999999999999862 222344555 56779999999999999999999999 98
Q ss_pred cc
Q psy16032 68 IS 69 (243)
Q Consensus 68 ~~ 69 (243)
++
T Consensus 457 ~~ 458 (480)
T PLN02648 457 FE 458 (480)
T ss_pred Ee
Confidence 77
No 65
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=82.05 E-value=1.2 Score=26.53 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=9.9
Q ss_pred ccCCCCCCCCCCCCc
Q psy16032 22 FDPGRFLQDKLPAQF 36 (243)
Q Consensus 22 f~p~R~~~~~~~~~~ 36 (243)
=||||||....+..|
T Consensus 43 PDPERWLP~~dRS~y 57 (59)
T PF08492_consen 43 PDPERWLPKRDRSYY 57 (59)
T ss_pred CCccccCchhhhccc
Confidence 389999985444443
No 66
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=75.34 E-value=13 Score=21.19 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy16032 147 QLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEI 188 (243)
Q Consensus 147 ~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei 188 (243)
++...+..++-.|.|..+..+.-.+....-||+....+..|+
T Consensus 6 d~l~eiS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~el 47 (48)
T PF12554_consen 6 DVLHEISDLLNTGLDRETLSICIELCENGVNPEALAAVIKEL 47 (48)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 455666777778888888888888888888999988888776
No 67
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=66.79 E-value=4.4 Score=23.98 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=20.4
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhhcC
Q psy16032 168 RWFLLVMAMEQDVQDTLRAEITSKSS 193 (243)
Q Consensus 168 ~~~l~~l~~~p~~~~~l~~Ei~~~~~ 193 (243)
...+.+|.+||++.+++.+.-.+++|
T Consensus 3 Q~iV~YLv~nPevl~kl~~g~asLIG 28 (57)
T PF05952_consen 3 QEIVNYLVQNPEVLEKLKEGEASLIG 28 (57)
T ss_pred HHHHHHHHHChHHHHHHHcCCeeEec
Confidence 45678999999999999876555544
No 68
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=61.55 E-value=2.7 Score=30.98 Aligned_cols=31 Identities=23% Similarity=0.584 Sum_probs=26.4
Q ss_pred CCccCCCCCC-----CCCCCCccccCCCcCCCCcHH
Q psy16032 20 HRFDPGRFLQ-----DKLPAQFMPFQVGKRMCMGGE 50 (243)
Q Consensus 20 ~~f~p~R~~~-----~~~~~~~~~fg~G~r~C~G~~ 50 (243)
-+|||++|=. ..+...++.|..|.-.|-|..
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 4799999976 567788999999999999953
No 69
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=53.44 E-value=15 Score=22.45 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=12.3
Q ss_pred ChhHHHHHHHHhccC
Q psy16032 205 MSYLAACINETHRYR 219 (243)
Q Consensus 205 l~yl~~~i~E~lR~~ 219 (243)
.-+++.+|+|++|+.
T Consensus 40 ~~fv~~~IkEA~RFk 54 (65)
T PF15300_consen 40 KQFVEMIIKEAARFK 54 (65)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999999973
No 70
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=48.29 E-value=7.6 Score=18.72 Aligned_cols=6 Identities=50% Similarity=1.121 Sum_probs=3.9
Q ss_pred ccCCCC
Q psy16032 22 FDPGRF 27 (243)
Q Consensus 22 f~p~R~ 27 (243)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 467776
No 71
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=48.01 E-value=7.7 Score=19.37 Aligned_cols=6 Identities=50% Similarity=1.121 Sum_probs=4.3
Q ss_pred ccCCCC
Q psy16032 22 FDPGRF 27 (243)
Q Consensus 22 f~p~R~ 27 (243)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 567876
No 72
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=47.27 E-value=5.6 Score=29.65 Aligned_cols=30 Identities=23% Similarity=0.581 Sum_probs=25.6
Q ss_pred CCccCCCCCC-----CCCCCCccccCCCcCCCCcH
Q psy16032 20 HRFDPGRFLQ-----DKLPAQFMPFQVGKRMCMGG 49 (243)
Q Consensus 20 ~~f~p~R~~~-----~~~~~~~~~fg~G~r~C~G~ 49 (243)
-+|+|+||=. ..+.-..+.|+.|.-.|.|-
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 5899999976 45567889999999999985
No 73
>PLN00062 TATA-box-binding protein; Provisional
Probab=38.15 E-value=8.9 Score=28.74 Aligned_cols=30 Identities=27% Similarity=0.597 Sum_probs=25.4
Q ss_pred CCccCCCCCC-----CCCCCCccccCCCcCCCCcH
Q psy16032 20 HRFDPGRFLQ-----DKLPAQFMPFQVGKRMCMGG 49 (243)
Q Consensus 20 ~~f~p~R~~~-----~~~~~~~~~fg~G~r~C~G~ 49 (243)
-+|+||+|=. ..+.-..+.|+.|.-.|.|-
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGa 63 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 63 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEec
Confidence 6999999876 45567889999999999984
No 74
>PRK00394 transcription factor; Reviewed
Probab=37.85 E-value=11 Score=28.33 Aligned_cols=29 Identities=24% Similarity=0.581 Sum_probs=25.1
Q ss_pred CCccCCCCCC-----CCCCCCccccCCCcCCCCc
Q psy16032 20 HRFDPGRFLQ-----DKLPAQFMPFQVGKRMCMG 48 (243)
Q Consensus 20 ~~f~p~R~~~-----~~~~~~~~~fg~G~r~C~G 48 (243)
-+|+|+||=. ..+.-..+.|..|.-.|.|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 5999999876 5566788999999999998
No 75
>KOG3302|consensus
Probab=37.58 E-value=12 Score=28.24 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=25.2
Q ss_pred CCCccCCCCCC-----CCCCCCccccCCCcCCCCcH
Q psy16032 19 PHRFDPGRFLQ-----DKLPAQFMPFQVGKRMCMGG 49 (243)
Q Consensus 19 p~~f~p~R~~~-----~~~~~~~~~fg~G~r~C~G~ 49 (243)
-.+|+|.||-. ..+.-....|+.|.-.|-|.
T Consensus 49 N~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA 84 (200)
T KOG3302|consen 49 NAEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGA 84 (200)
T ss_pred ccccCcccccEEEEEEcCCceEEEEecCCcEEEecc
Confidence 35799999987 45566778999999999973
No 76
>PF14129 DUF4296: Domain of unknown function (DUF4296)
Probab=36.79 E-value=1.2e+02 Score=19.56 Aligned_cols=48 Identities=2% Similarity=-0.013 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy16032 144 TSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSK 191 (243)
Q Consensus 144 ~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~ 191 (243)
............++--++.++..+...+.+-++||+...++.+++.+-
T Consensus 30 ~~~~~~~~~~~~I~kKy~Ids~~f~~S~~YY~~~p~~~~~Iy~~V~~r 77 (87)
T PF14129_consen 30 SSDDNMIAYYQYIFKKYGIDSAQFDSSMVYYSRNPEEYEKIYDKVIER 77 (87)
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 444555666677888899999999999999999999999998887654
No 77
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=35.33 E-value=55 Score=21.28 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhcCC
Q psy16032 178 QDVQDTLRAEITSKSSG 194 (243)
Q Consensus 178 p~~~~~l~~Ei~~~~~~ 194 (243)
|+....+|+||.+|+.+
T Consensus 36 pd~l~~Lr~eIl~VI~K 52 (88)
T COG0851 36 PDYLEQLRKEILEVISK 52 (88)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 88999999999988654
No 78
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=34.97 E-value=11 Score=28.09 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=25.0
Q ss_pred CCccCCCCCC-----CCCCCCccccCCCcCCCCc
Q psy16032 20 HRFDPGRFLQ-----DKLPAQFMPFQVGKRMCMG 48 (243)
Q Consensus 20 ~~f~p~R~~~-----~~~~~~~~~fg~G~r~C~G 48 (243)
-+|+||||=. ..+.-..+.|+.|.-.|.|
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitG 62 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITG 62 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEe
Confidence 5899999876 4566788999999999998
No 79
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=34.48 E-value=11 Score=18.38 Aligned_cols=7 Identities=43% Similarity=0.942 Sum_probs=4.5
Q ss_pred ccCCCCC
Q psy16032 22 FDPGRFL 28 (243)
Q Consensus 22 f~p~R~~ 28 (243)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4677764
No 80
>KOG4189|consensus
Probab=34.13 E-value=2.1e+02 Score=21.79 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHhhccccchHH--HHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy16032 144 TSKQLYHLLGDLFGASLDTSTI--LMRWFLLVMAMEQDVQDTLRAEITSK 191 (243)
Q Consensus 144 ~~~~~~~~~~~l~~ag~~tt~~--~l~~~l~~l~~~p~~~~~l~~Ei~~~ 191 (243)
+..++...+.+=.+|-+++.+. +..-++|.|-..|+...+|.++++..
T Consensus 129 s~~diakesYd~~lakhHsW~IRtAV~~amYtLPTR~~lL~~Lk~d~~~~ 178 (209)
T KOG4189|consen 129 SLKDIAKESYDKTLAKHHSWAIRTAVAAAMYTLPTRPELLCRLKEDMDAA 178 (209)
T ss_pred hhhHHHHHHHHHhhhccccHHHHHHHHHHHHhCCCcHHHHHHHHhHHHHH
Confidence 4445666777777888887653 55678999999999999999998654
No 81
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=34.00 E-value=7.8 Score=25.03 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=24.4
Q ss_pred CCccCCCCCC-----CCCCCCccccCCCcCCCCcH
Q psy16032 20 HRFDPGRFLQ-----DKLPAQFMPFQVGKRMCMGG 49 (243)
Q Consensus 20 ~~f~p~R~~~-----~~~~~~~~~fg~G~r~C~G~ 49 (243)
.+|+||||=. ..+.-....|..|.=.|.|.
T Consensus 31 ~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 31 VEYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred cEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 4799998755 55567889999999999984
No 82
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=32.08 E-value=13 Score=27.69 Aligned_cols=31 Identities=26% Similarity=0.603 Sum_probs=25.6
Q ss_pred CCCCCccCCCCCC-----CCCCCCccccCCCcCCCCc
Q psy16032 17 QEPHRFDPGRFLQ-----DKLPAQFMPFQVGKRMCMG 48 (243)
Q Consensus 17 ~~p~~f~p~R~~~-----~~~~~~~~~fg~G~r~C~G 48 (243)
+| .+|+||+|=. ..+.-..+.|+.|.-.|.|
T Consensus 27 ~n-~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTG 62 (174)
T cd04516 27 RN-AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTG 62 (174)
T ss_pred CC-CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEe
Confidence 44 6999999876 4556678999999999998
No 83
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=31.62 E-value=73 Score=20.44 Aligned_cols=37 Identities=3% Similarity=0.001 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHhhcCCCCCChhhh
Q psy16032 166 LMRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDI 202 (243)
Q Consensus 166 ~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~ 202 (243)
.+.-.+..|.+.|++.++-+++.+.+.....++.++.
T Consensus 5 ~~nrli~~L~~dp~~rerF~~DPea~~~~~gLt~eE~ 41 (81)
T cd07922 5 PVNRLIQELFKDPGLIERFQDDPSAVFEEYGLTPAER 41 (81)
T ss_pred HHHHHHHHHhcCHHHHHHHHHCHHHHHHHcCCCHHHH
Confidence 3455778899999999999999988876655555543
No 84
>KOG3506|consensus
Probab=31.43 E-value=22 Score=20.73 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=8.8
Q ss_pred cccCCCcCCCC
Q psy16032 37 MPFQVGKRMCM 47 (243)
Q Consensus 37 ~~fg~G~r~C~ 47 (243)
-+||-|.|.|-
T Consensus 12 ~kfg~GsrsC~ 22 (56)
T KOG3506|consen 12 RKFGQGSRSCR 22 (56)
T ss_pred cccCCCCccee
Confidence 36999999875
No 85
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=28.98 E-value=1e+02 Score=16.51 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=13.5
Q ss_pred HHHHHHHHHh-hCHHHHHHHHH
Q psy16032 166 LMRWFLLVMA-MEQDVQDTLRA 186 (243)
Q Consensus 166 ~l~~~l~~l~-~~p~~~~~l~~ 186 (243)
.+...+..++ +||++++.++.
T Consensus 14 qL~~lL~~l~~~HPei~~~i~~ 35 (38)
T PF14483_consen 14 QLQSLLQSLCERHPEIQQEIRS 35 (38)
T ss_dssp HHHHHHHHHHHHSTHHHHHHHT
T ss_pred HHHHHHHHHHHhChhHHHHHHh
Confidence 3444444555 89999887764
No 86
>PF05906 DUF865: Herpesvirus-7 repeat of unknown function (DUF865)
Probab=28.19 E-value=26 Score=17.47 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=10.7
Q ss_pred CCCCccCCCCCCCCCCCCccccCCC
Q psy16032 18 EPHRFDPGRFLQDKLPAQFMPFQVG 42 (243)
Q Consensus 18 ~p~~f~p~R~~~~~~~~~~~~fg~G 42 (243)
||..|.|-. ....-+.|++|
T Consensus 15 npltfkpvk-----ttgtavvfsag 34 (35)
T PF05906_consen 15 NPLTFKPVK-----TTGTAVVFSAG 34 (35)
T ss_pred Cccceeeee-----ccceEEEeecc
Confidence 445555543 44555666665
No 87
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=26.42 E-value=51 Score=16.80 Aligned_cols=16 Identities=19% Similarity=0.592 Sum_probs=13.0
Q ss_pred CCCCccccCCCcCCCC
Q psy16032 32 LPAQFMPFQVGKRMCM 47 (243)
Q Consensus 32 ~~~~~~~fg~G~r~C~ 47 (243)
....|+++.+..|.|.
T Consensus 16 ~~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 16 RDNTYQPYDGPRRFCR 31 (31)
T ss_pred CCCcEeCCCCccccCc
Confidence 3588999998888884
No 88
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=25.14 E-value=1.1e+02 Score=20.06 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHhh
Q psy16032 164 TILMRWFLLVMAMEQDVQDTLRAEITSK 191 (243)
Q Consensus 164 ~~~l~~~l~~l~~~p~~~~~l~~Ei~~~ 191 (243)
..++.|.++..-.-|+..+.|++||+++
T Consensus 53 l~~lgy~v~tFnDcpeA~~eL~~eI~eA 80 (91)
T PF08285_consen 53 LFTLGYGVATFNDCPEAAKELQKEIKEA 80 (91)
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence 3456667777777799999999999875
No 89
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=22.87 E-value=1.4e+02 Score=18.25 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHH
Q psy16032 164 TILMRWFLLVMAMEQDVQDTLRAEI 188 (243)
Q Consensus 164 ~~~l~~~l~~l~~~p~~~~~l~~Ei 188 (243)
+.....++-..+++||.+.+++.-.
T Consensus 20 G~v~~~a~e~iaRqPE~~~~i~~~m 44 (66)
T PRK13467 20 GFLMANLFKSAARQPEMIGQLRSLM 44 (66)
T ss_pred HHHHHHHHHHHHcChhHHHhHHHHH
Confidence 3445567888999999999998653
No 90
>KOG2154|consensus
Probab=22.12 E-value=3e+02 Score=24.16 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=54.4
Q ss_pred hhhHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhhCHHHHHHHHHHHHhhcCCCC--CChhhhcC
Q psy16032 127 TYESAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTI--VTLDDITS 204 (243)
Q Consensus 127 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~ag~~tt~~~l~~~l~~l~~~p~~~~~l~~Ei~~~~~~~~--~~~~~~~~ 204 (243)
.+.|.+++.--- ...+....+...+-..+.|-.|.....+.++.-.|.+||.+|..++++...-..++. .+.+|..+
T Consensus 337 ~L~D~FLSSTHL-pa~LvAsFlKrLaRlaL~APpeA~~~vipfI~Nll~rHp~c~~lvhr~~~~~~~~Dpfd~~EtDP~k 415 (505)
T KOG2154|consen 337 RLADLFLSSTHL-PAYLVASFLKRLARLALEAPPEAIVIVIPFICNLLRRHPNCQPLVHRSHALSLYDDPFDNDETDPKK 415 (505)
T ss_pred HHHHHHhhcccc-hHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHhCCchhhhhcccccccCCCCCCCCCCCChhh
Confidence 456666654211 112334445555556667778888888888888889999999999987543222233 44455555
Q ss_pred ChhHHHHHHHH
Q psy16032 205 MSYLAACINET 215 (243)
Q Consensus 205 l~yl~~~i~E~ 215 (243)
-.-+++.+-|.
T Consensus 416 s~ALeSSLWEL 426 (505)
T KOG2154|consen 416 SGALESSLWEL 426 (505)
T ss_pred hhhHHHHHHHH
Confidence 55566666554
No 91
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=20.71 E-value=1.6e+02 Score=17.44 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHH
Q psy16032 165 ILMRWFLLVMAMEQDVQDTLRAEI 188 (243)
Q Consensus 165 ~~l~~~l~~l~~~p~~~~~l~~Ei 188 (243)
.....++-.++++||...+++.-.
T Consensus 11 ~i~~~a~~~iaRqPe~~~~l~~~~ 34 (58)
T TIGR01260 11 ILGGKFLESAARQPELKPLLRTTM 34 (58)
T ss_pred HHHHHHHHHHHcChhHHHhHHHHH
Confidence 344567788999999999988643
No 92
>KOG2376|consensus
Probab=20.53 E-value=55 Score=29.39 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=16.8
Q ss_pred cCCCCCCCCCCCCccccCCCcCCCC
Q psy16032 23 DPGRFLQDKLPAQFMPFQVGKRMCM 47 (243)
Q Consensus 23 ~p~R~~~~~~~~~~~~fg~G~r~C~ 47 (243)
|||||++...+..|-|=-.|.|.-+
T Consensus 582 DPERWLP~reRS~yr~KrK~k~~~~ 606 (652)
T KOG2376|consen 582 DPERWLPRRERSTYRPKRKGKRAAI 606 (652)
T ss_pred ChhhcccchhccccCcccccchhhh
Confidence 5667777667777777777777433
No 93
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=20.08 E-value=1.8e+02 Score=17.85 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHH
Q psy16032 165 ILMRWFLLVMAMEQDVQDTLRAEI 188 (243)
Q Consensus 165 ~~l~~~l~~l~~~p~~~~~l~~Ei 188 (243)
.....++-..+++||.+.+++.-.
T Consensus 21 ~~~~~~~e~vaRqPea~~~l~~~~ 44 (66)
T PRK13466 21 LLVASYLSSTARQPEMQSKLMAGV 44 (66)
T ss_pred HHHHHHHHHHHcChhHHHhHHHHH
Confidence 344567788999999999998654
Done!