RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16032
(243 letters)
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 81.5 bits (202), Expect = 5e-18
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 116 FLSNLIKQYRVTYES--------AFL---QEAKSNPE-IYTSKQLYHLLGDLFGASLDTS 163
FLS LI++ V + A+L + K++P ++ + L +G+L A +T+
Sbjct: 230 FLSRLIEKASVNRKPQLPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETT 289
Query: 164 TILMRWFLLVMAMEQDVQDTLRAEITSK-SSGTIVTLDDITSMSYLAACINETHRYRTIV 222
T ++RW +L MA+ ++Q ++ EI + DD M Y A ++E R+ IV
Sbjct: 290 TNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIV 349
Query: 223 TLGTP 227
LG
Sbjct: 350 PLGIF 354
Score = 75.3 bits (186), Expect = 6e-16
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD----KLPAQFMPFQVGKRMCMGGELARMIA 56
VI LYS+H + + ++P F P RFL +PF +G+R C+G LARM
Sbjct: 373 TVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEHLARMEM 432
Query: 57 TLFLSNLNQ-IPISPLSSVRLATYYQVDLTLTP 88
LF + L Q + + ++ +TL P
Sbjct: 433 FLFFTALLQRFHLHFPHELVPDLKPRLGMTLQP 465
Score = 36.4 bits (85), Expect = 0.006
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYR 125
G+R C+G LARM LF + L++++
Sbjct: 418 GRRHCLGEHLARMEMFLFFTALLQRFH 444
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 80.7 bits (200), Expect = 9e-18
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 116 FLSNLIKQYRVTYES--------AFL---QEAKSNPE-IYTSKQLYHLLGDLFGASLDTS 163
F+ ++++R T + +L ++ KS+P + + L + LF A +T+
Sbjct: 225 FIGQSVEKHRATLDPSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETT 284
Query: 164 TILMRWFLLVMAMEQDVQDTLRAEITSK-SSGTIVTLDDITSMSYLAACINETHRYRTIV 222
+ +R+ L+M V + ++ EI S LDD M Y A I+E R ++
Sbjct: 285 STTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLI 344
Query: 223 TLGTP 227
G P
Sbjct: 345 PFGVP 349
Score = 70.7 bits (174), Expect = 2e-14
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD----KLPAQFMPFQVGKRMCMGGELARMIA 56
V P L S + + P+ F+PG FL K FMPF +GKR+C+G +AR
Sbjct: 368 EVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTEL 427
Query: 57 TLFLSNLNQ 65
LF + + Q
Sbjct: 428 FLFFTTILQ 436
Score = 32.5 bits (75), Expect = 0.11
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYR 125
GKR+C+G +AR LF + +++ +
Sbjct: 413 GKRICLGEGIARTELFLFFTTILQNFS 439
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 80.7 bits (200), Expect = 1e-17
Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 13/125 (10%)
Query: 116 FLSNLIKQYRVTYES--------AFLQE---AKSNPE-IYTSKQLYHLLGDLFGASLDTS 163
FL ++++ ++ A + + +++ +L+ D+FGA DT
Sbjct: 239 FLQKTVQEHYQDFDKNSVRDITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGAGFDTV 298
Query: 164 TILMRWFLLVMAMEQDVQDTLRAEITSK-SSGTIVTLDDITSMSYLAACINETHRYRTIV 222
T + W L+ + + ++Q ++ E+ + L D + YL A I ET R+ + +
Sbjct: 299 TTAISWSLMYLVTKPEIQRKIQKELDTVIGRERRPRLSDRPQLPYLEAFILETFRHSSFL 358
Query: 223 TLGTP 227
P
Sbjct: 359 PFTIP 363
Score = 74.5 bits (184), Expect = 1e-15
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDK-------LPAQFMPFQVGKRMCMGGELAR 53
V + ++ + E ++P F P RFL L + M F +GKR C+G LA+
Sbjct: 382 CVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCIGEVLAK 441
Query: 54 MIATLFLSNLNQ 65
LFL+ L Q
Sbjct: 442 WEIFLFLAILLQ 453
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 80.3 bits (199), Expect = 1e-17
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Query: 116 FLSNLIKQYRVTYES---------AFL---QEAKSNPE-IYTSKQLYHLLGDLFGASLDT 162
L L+ ++R+T++ AFL ++AK NPE + + L ++ DLF A + T
Sbjct: 228 QLDELLTEHRMTWDPAQPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVT 287
Query: 163 STILMRWFLLVMAMEQDVQDTLRAEITSK-SSGTIVTLDDITSMSYLAACINETHRYRTI 221
++ + W LL+M + DVQ ++ EI + D M Y A I+E R+ I
Sbjct: 288 TSTTLAWGLLLMILHPDVQRRVQQEIDDVIGQVRRPEMGDQAHMPYTTAVIHEVQRFGDI 347
Query: 222 VTLGTP 227
V LG
Sbjct: 348 VPLGVT 353
Score = 75.7 bits (187), Expect = 5e-16
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD----KLPAQFMPFQVGKRMCMGGELARMIA 56
+I L S+ + ++P RF P FL P F+PF G+R C+G LARM
Sbjct: 372 TLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPLARMEL 431
Query: 57 TLFLSNLNQ 65
LF ++L Q
Sbjct: 432 FLFFTSLLQ 440
Score = 36.4 bits (85), Expect = 0.006
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYR 125
G+R C+G LARM LF ++L++ +
Sbjct: 417 GRRACLGEPLARMELFLFFTSLLQHFS 443
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 79.9 bits (198), Expect = 2e-17
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 116 FLSNLIKQYRVTYES--------AFL---QEAKSNPE-IYTSKQLYHLLGDLFGASLDTS 163
++S +K++ + + L ++ K + E +YT + + DLF A +T+
Sbjct: 224 YVSERVKEHHQSLDPNCPRDLTDCLLVEMEKEKHSAERLYTMDGITVTVADLFFAGTETT 283
Query: 164 TILMRWFLLVMAMEQDVQDTLRAEITSK-SSGTIVTLDDITSMSYLAACINETHRYRTIV 222
+ +R+ LL++ ++++ L EI I + D M Y+ A ++E R+ T+V
Sbjct: 284 STTLRYGLLILMKYPEIEEKLHEEIDRVIGPSRIPAIKDRQEMPYMDAVVHEIQRFITLV 343
Query: 223 TLGTP 227
P
Sbjct: 344 PSNLP 348
Score = 73.3 bits (181), Expect = 3e-15
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD----KLPAQFMPFQVGKRMCMGGELARMIA 56
+V+P L S+ + + +P +F P FL + K F PF GKR+C G LARM
Sbjct: 367 VVVPTLDSVLYDNQEFPDPEKFKPEHFLNENGKFKYSDYFKPFSTGKRVCAGEGLARMEL 426
Query: 57 TLFLSNLNQ 65
L L + Q
Sbjct: 427 FLLLCAILQ 435
Score = 34.8 bits (81), Expect = 0.019
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYR 125
GKR+C G LARM L L +++ +
Sbjct: 412 GKRVCAGEGLARMELFLLLCAILQHFN 438
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 79.1 bits (196), Expect = 3e-17
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 116 FLSNLIKQYRVTYES--------AFL---QEAKSNPE-IYTSKQLYHLLGDLFGASLDTS 163
F++ ++ + T + +FL QE + NP + K L +LF +T
Sbjct: 225 FIAKKVEHNQRTLDPNSPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFIGGTETV 284
Query: 164 TILMRWFLLVMAMEQDVQDTLRAEITSK-SSGTIVTLDDITSMSYLAACINETHRYRTIV 222
+ +R+ L++ +V+ + EI +D M Y+ A I+E R+ ++
Sbjct: 285 STTLRYGFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVI 344
Query: 223 TLGTP 227
+
Sbjct: 345 PMSLA 349
Score = 73.0 bits (180), Expect = 4e-15
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD----KLPAQFMPFQVGKRMCMGGELARMIA 56
V P L S+ + P F+P FL + K F+PF +GKR C G LARM
Sbjct: 368 EVYPMLGSVLRDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGLARMEL 427
Query: 57 TLFLSNLNQ 65
LF + + Q
Sbjct: 428 FLFFTTVMQ 436
Score = 34.5 bits (80), Expect = 0.029
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRVT 127
GKR C G LARM LF + +++ +R+
Sbjct: 413 GKRNCFGEGLARMELFLFFTTVMQNFRLK 441
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 79.1 bits (196), Expect = 3e-17
Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 116 FLSNLIKQYRVTYES--------AFL---QEAKSNPE-IYTSKQLYHLLGDLFGASLDTS 163
++ +K+++ + + FL ++ K N +T + L + DLFGA +T+
Sbjct: 226 YILEKVKEHQESMDMNNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETT 285
Query: 164 TILMRWFLLVMAMEQDVQDTLRAEITSK-SSGTIVTLDDITSMSYLAACINETHRYRTIV 222
+ +R+ LL++ +V ++ EI + D + M Y A ++E RY ++
Sbjct: 286 STTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLL 345
Query: 223 TLGTP 227
P
Sbjct: 346 PTSLP 350
Score = 73.0 bits (180), Expect = 4e-15
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD----KLPAQFMPFQVGKRMCMGGELARMIA 56
++ L S+ + + P FDP FL + K FMPF GKR+C+G LA M
Sbjct: 369 TILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAGMEL 428
Query: 57 TLFLSNLNQ 65
LFL+++ Q
Sbjct: 429 FLFLTSILQ 437
Score = 35.2 bits (82), Expect = 0.014
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYR 125
GKR+C+G LA M LFL+++++ +
Sbjct: 414 GKRICVGEALAGMELFLFLTSILQNFN 440
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 78.8 bits (195), Expect = 4e-17
Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 17/129 (13%)
Query: 116 FLSNLIKQYRVTYES--------AFLQE---AKSNPEI--YTSKQLYHLLGDLFGASLDT 162
+ +++++ + + LQ + ++ + DLF +T
Sbjct: 235 MVEKQLRRHKESMVAGQWRDMTDYMLQGVGRQRVEEGPGQLLEGHVHMSVVDLFIGGTET 294
Query: 163 STILMRWFLLVMAMEQDVQDTLRAEITS----KSSGTIVTLDDITSMSYLAACINETHRY 218
+ + W + + ++Q L+ E+ +S + VT D + L A I E R
Sbjct: 295 TASTLSWAVAFLLHHPEIQRRLQEELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRL 354
Query: 219 RTIVTLGTP 227
R +V L P
Sbjct: 355 RPVVPLALP 363
Score = 76.5 bits (189), Expect = 3e-16
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
+VIP L H++ ++PH F P RFL+ + F G R+C+G LAR+ + L
Sbjct: 382 VVIPNLQGAHLDETVWEQPHEFRPDRFLEPGANPSALAFGCGARVCLGESLARLELFVVL 441
Query: 61 SNLNQ 65
+ L Q
Sbjct: 442 ARLLQ 446
Score = 34.9 bits (81), Expect = 0.021
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYR 125
G R+C+G LAR+ + L+ L++ +
Sbjct: 423 GARVCLGESLARLELFVVLARLLQAFT 449
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 77.2 bits (191), Expect = 1e-16
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 19/131 (14%)
Query: 116 FLSNLIKQYRVTYES--------AFLQE----AKSNP------EIYTSKQLYHLLGDLFG 157
L+ +++ Y+ + S +Q N E+ + + +GD+FG
Sbjct: 224 LLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFG 283
Query: 158 ASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSK-SSGTIVTLDDITSMSYLAACINETH 216
A ++T+T +++W L + V+ L EI T+ D + L A I E
Sbjct: 284 AGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVL 343
Query: 217 RYRTIVTLGTP 227
R R + + P
Sbjct: 344 RLRPVAPMLIP 354
Score = 73.7 bits (182), Expect = 2e-15
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD------KLPAQFMPFQVGKRMCMGGELARM 54
VI L+++H N + +P +F P RFL ++PF G R C+G LAR
Sbjct: 373 EVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQ 432
Query: 55 IATLFLSNLNQ 65
L ++ L Q
Sbjct: 433 ELFLIMAWLLQ 443
Score = 34.8 bits (81), Expect = 0.022
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYR 125
G R C+G LAR L ++ L++++
Sbjct: 420 GPRSCIGEILARQELFLIMAWLLQRFD 446
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 76.1 bits (188), Expect = 3e-16
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDK------LPAQFMPFQVGKRMCMGGELARM 54
+V +S++ + P FDP RFL L ++ M F VGKR C+G EL++M
Sbjct: 379 VVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKM 438
Query: 55 IATLFLSNLNQ 65
LF+S L
Sbjct: 439 QLFLFISILAH 449
Score = 76.1 bits (188), Expect = 3e-16
Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 116 FLSNLIKQYRVTYES---------AFL---QEAKSNPEI-----YTSKQLYHLLGDLFGA 158
F+ + ++ + AF+ ++ + + + + D+FGA
Sbjct: 231 FILDKFLRHCESLRPGAAPRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATITDIFGA 290
Query: 159 SLDTSTILMRWFLLVMAMEQDVQDTLRAEITSK-SSGTIVTLDDITSMSYLAACINETHR 217
S DT + ++W LL+ DVQ ++AE+ + + D ++ Y+ A + E R
Sbjct: 291 SQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDRLPCMGDQPNLPYVLAFLYEAMR 350
Query: 218 YRTIVTLGTP 227
+ + V + P
Sbjct: 351 FSSFVPVTIP 360
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 70.4 bits (173), Expect = 3e-14
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 116 FLSNLIKQYRVTYESA----FLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFL 171
+ I Y FL + + + K+LY + +L A+++T+ + W L
Sbjct: 249 SVKPCIDNRLQRYSQQPGADFLCDIYQQDHL-SKKELYAAVTELQLAAVETTANSLMWIL 307
Query: 172 LVMAMEQDVQDTLRAEITSK-SSGTIVTLDDITSMSYLAACINETHRYRTIVTL 224
++ Q L E+ S +D+ +M YL AC+ E+ R V
Sbjct: 308 YNLSRNPQAQRRLLQEVQSVLPDNQTPRAEDLRNMPYLKACLKESMRLTPSVPF 361
Score = 62.7 bits (153), Expect = 1e-11
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKL---PAQFMPFQVGKRMCMGGELARMIAT 57
++ + + + ++ H+F P R+LQ + P +PF +GKRMC+G LA +
Sbjct: 382 VLTLNTQVLGSSEDNFEDSHKFRPERWLQKEKKINPFAHLPFGIGKRMCIGRRLAELQLH 441
Query: 58 LFLSNL---------NQIPISPLSSVRLATYYQVDLTLTP 88
L L + + P+ L L ++ + P
Sbjct: 442 LALCWIIQKYDIVATDNEPVEMLHLGILVPSRELPIAFRP 481
Score = 36.1 bits (84), Expect = 0.008
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRVTYE 129
GKRMC+G LA + L L +I++Y +
Sbjct: 426 GKRMCIGRRLAELQLHLALCWIIQKYDIVAT 456
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 68.1 bits (167), Expect = 2e-13
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQ-----FMPFQVGKRMCMGGELARMI 55
+V + H + + + +P +FDP RF D +PF G R C+G E AR+
Sbjct: 341 LVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPFAHVPFGGGLRECLGKEFARLE 400
Query: 56 ATLFLSNL 63
LF + L
Sbjct: 401 MKLFATRL 408
Score = 55.0 bits (133), Expect = 5e-09
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 109 ARMIATLFLSNLIKQYRVTYE------SAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDT 162
AR + L +IK + L N + + +L + L A +T
Sbjct: 199 ARALLLAELEKIIKARQQQPPSEEDALGILLAARDDNNQPLSLPELKDQILLLLFAGHET 258
Query: 163 STILMRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDITSMSYLAACINETHRYRTIV 222
T + F L++ D+++ +R E +T + + M YL + E R V
Sbjct: 259 LTSALSSFCLLLGQHSDIRERVRQEQNKLQLSQELTAETLKKMPYLDQVLQEVLRLIPPV 318
Score = 38.8 bits (91), Expect = 0.001
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRVT 127
G R C+G E AR+ LF + LI+Q+ T
Sbjct: 387 GLRECLGKEFARLEMKLFATRLIQQFDWT 415
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 64.7 bits (158), Expect = 3e-12
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 132 FLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSK 191
L + ++ + + + + ++ +DT+++ ++W L MA VQD LRAE+ +
Sbjct: 261 ILYRLLGDSKM-SFEDIKANVTEMLAGGVDTTSMTLQWHLYEMARNLKVQDMLRAEVLAA 319
Query: 192 -SSGTIVTLDDITSMSYLAACINETHR 217
+ + L A I ET R
Sbjct: 320 RHQAQGDMATMLQLVPLLKASIKETLR 346
Score = 50.4 bits (121), Expect = 1e-07
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKL---PAQFMPFQVGKRMCMGGELARMIAT 57
+V +Y++ +P FDP R+L + + F G R C+G +A + T
Sbjct: 374 LVQVAIYALGREPTFFFDPENFDPTRWLSKDKNITYFRNLGFGWGVRQCLGRRIAELEMT 433
Query: 58 LFLSNL 63
+FL N+
Sbjct: 434 IFLINM 439
Score = 31.5 bits (72), Expect = 0.22
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRVTYE 129
G R C+G +A + T+FL N+++ +RV +
Sbjct: 418 GVRQCLGRRIAELEMTIFLINMLENFRVEIQ 448
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 62.4 bits (152), Expect = 2e-11
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPA-QFMPF----QVGKRMCMGGELARMI 55
V+ LY + + +P F P RF + F+P C G + I
Sbjct: 311 QVVLDLYGSNHDAATWADPQEFRPERFRAWDEDSFNFIPQGGGDHYLGHRCPGEWIVLAI 370
Query: 56 ATLFLSNL 63
+ L
Sbjct: 371 MKVAAHLL 378
Score = 33.1 bits (76), Expect = 0.070
Identities = 10/129 (7%), Positives = 28/129 (21%), Gaps = 24/129 (18%)
Query: 106 GELARMIATLFLSNLIKQYRVTYESA-------FLQEAKSNPEIYTSKQLYHLLGDLFGA 158
LAR + +I+ R + + + + S + +
Sbjct: 182 SRLARRRVDAWAKRIIEGIRAGSIGSGSGTAAYAIAWHRDRHDDLLSPHVAAVELVNVLR 241
Query: 159 SLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDITSMSYLAACINETHRY 218
+ + + + ++ L + Y + E R+
Sbjct: 242 PTVAIAVYITFVAHALQTCSGIRAALVQQ-----------------PDYAELFVQEVRRF 284
Query: 219 RTIVTLGTP 227
Sbjct: 285 YPFFPAVVA 293
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 62.4 bits (152), Expect = 2e-11
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKL-PAQFMPF----QVGKRMCMGGELARMI 55
V+ LY + + P F P RF + + +P C G + +
Sbjct: 313 SVLLDLYGTNHDPRLWDHPDEFRPERFAEREENLFDMIPQGGGHAEKGHRCPGEGITIEV 372
Query: 56 ATLFLSNL 63
L L
Sbjct: 373 MKASLDFL 380
Score = 37.4 bits (87), Expect = 0.003
Identities = 10/115 (8%), Positives = 29/115 (25%), Gaps = 25/115 (21%)
Query: 116 FLSNLIKQYRVTYE--------SAFLQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILM 167
++ +I+ R + + S+ L ++ + + +
Sbjct: 193 WIEVMIEDARAGLLKTTSGTALHEMAFHTQEDGSQLDSRMAAIELINVL-RPIVAISYFL 251
Query: 168 RWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDITSMSYLAACINETHRYRTIV 222
+ L + ++ LR+ + + E RY
Sbjct: 252 VFSALALHEHPKYKEWLRSG----------------NSREREMFVQEVRRYYPFG 290
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 58.7 bits (142), Expect = 3e-10
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD-------------KLPAQFMPFQVGKRMCM 47
++ PF S + E + +P F RFL +L MP+ G C+
Sbjct: 374 LLFPF-LSPQRDPEIYTDPEVFKYNRFLNPDGSEKKDFYKDGKRLKNYNMPWGAGHNHCL 432
Query: 48 GGELARMIATLFLSNL 63
G A F+ +
Sbjct: 433 GRSYAVNSIKQFVFLV 448
Score = 57.5 bits (139), Expect = 7e-10
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 144 TSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITS--------KSSGT 195
+ + L A+ W LL + + +R E+ S S T
Sbjct: 259 SEEMQARALVLQLWATQGNMGPAAFWLLLFLLKNPEALAAVRGELESILWQAEQPVSQTT 318
Query: 196 IVTLDDITSMSYLAACINETHRYRTIVTL 224
+ + S L + ++E+ R +
Sbjct: 319 TLPQKVLDSTPVLDSVLSESLRLTAAPFI 347
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 58.2 bits (141), Expect = 4e-10
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD-------------KLPAQFMPFQVGKRMCM 47
++ + +H++ E + +P F R+L + KL +MPF G +C
Sbjct: 369 IIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPFGSGATICP 428
Query: 48 GGELARMIATLFLSNL 63
G A FL +
Sbjct: 429 GRLFAIHEIKQFLILM 444
Score = 57.0 bits (138), Expect = 1e-09
Identities = 10/103 (9%), Positives = 27/103 (26%), Gaps = 11/103 (10%)
Query: 133 LQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEI---- 188
+ + + AS + W L M + E+
Sbjct: 243 RMFLNDTLSTFDDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTL 302
Query: 189 -------TSKSSGTIVTLDDITSMSYLAACINETHRYRTIVTL 224
+ + + ++ ++ + L + I E+ R +
Sbjct: 303 ENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSASLN 345
Score = 30.8 bits (70), Expect = 0.43
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYR 125
G +C G A FL ++ +
Sbjct: 423 GATICPGRLFAIHEIKQFLILMLSYFE 449
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 58.1 bits (141), Expect = 5e-10
Identities = 24/134 (17%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
Query: 104 MGGELARMIATL--FLSNLIKQYRVTYES--------AFLQ---EAKSNPEIYTSKQLYH 150
+ + + + L + LI + R + F A+ ++ T + +
Sbjct: 240 LYKKYEKSVKDLKDAIEVLIAEKRRRISTEEKLEECMDFATELILAEKRGDL-TRENVNQ 298
Query: 151 LLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDITSMSYLAA 210
+ ++ A+ DT ++ + + L ++A +V++ + EI + + +DDI + +
Sbjct: 299 CILEMLIAAPDTMSVSLFFMLFLIAKHPNVEEAIIKEIQTVIGERDIKIDDIQKLKVMEN 358
Query: 211 CINETHRYRTIVTL 224
I E+ RY+ +V L
Sbjct: 359 FIYESMRYQPVVDL 372
Score = 45.0 bits (107), Expect = 9e-06
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
+I + +H E +P+ F F ++ F PF G R C G +A ++ L
Sbjct: 393 NIILNIGRMH-RLEFFPKPNEFTLENFAKNVPYRYFQPFGFGPRGCAGKYIAMVMMKAIL 451
Query: 61 SNLNQ------IPISPLSSVRLATYYQVDLTLTPDQ 90
L + + + S++ DL+L PD+
Sbjct: 452 VTLLRRFHVKTLQGQCVESIQKIH----DLSLHPDE 483
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 54.6 bits (132), Expect = 6e-09
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFL----QDKLPAQFMPFQVGKRMCMGGELARMIA 56
V ++ E F+P R+L ++PF G+ C+G A +
Sbjct: 352 QVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYVQI 411
Query: 57 TLFLSNL 63
S +
Sbjct: 412 KTIWSTM 418
Score = 53.1 bits (128), Expect = 2e-08
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 150 HLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITS--KSSGTIVTLDDITSMSY 207
L+G L TS+ W +A ++ +Q E + + +T D + ++
Sbjct: 256 MLIGLLLAGQ-HTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGENLPPLTYDQLKDLNL 314
Query: 208 LAACINETHR 217
L CI ET R
Sbjct: 315 LDRCIKETLR 324
Score = 29.6 bits (67), Expect = 1.0
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRVT 127
G+ C+G A + S +++ Y
Sbjct: 397 GRHRCIGENFAYVQIKTIWSTMLRLYEFD 425
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 54.6 bits (132), Expect = 6e-09
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFL----QDKLPAQFMPFQVGKRMCMGGELARMIA 56
+I Y+I + +++ + FDP R+L + PF GKR C +
Sbjct: 361 DIIYSPYAIQRDPKSYDDNLEFDPDRWLPERAANVPKYAMKPFSAGKRKCPSDHFSMAQL 420
Query: 57 TLFLSNL 63
TL + L
Sbjct: 421 TLITAAL 427
Score = 53.1 bits (128), Expect = 2e-08
Identities = 13/63 (20%), Positives = 26/63 (41%)
Query: 155 LFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDITSMSYLAACINE 214
+ +T + W L +A + D +R E+ + + G V +D+ + + I E
Sbjct: 271 ILTPGSETIASTIMWLLQALADHPEHADRIRDEVEAVTGGRPVAFEDVRKLRHTGNVIVE 330
Query: 215 THR 217
R
Sbjct: 331 AMR 333
Score = 28.4 bits (64), Expect = 2.1
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRVT 127
GKR C + TL + L +YR
Sbjct: 406 GKRKCPSDHFSMAQLTLITAALATKYRFE 434
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 54.6 bits (132), Expect = 7e-09
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQ-----FMPFQVGKRMCMGGELARMI 55
+V + E +PH F P R+ Q + ++PF G+ C+G A M
Sbjct: 344 LVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAIMQ 403
Query: 56 ATLFLSNL 63
S L
Sbjct: 404 IKAIFSVL 411
Score = 53.5 bits (129), Expect = 2e-08
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 144 TSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITS-KSSGTIVTLDDI 202
++ ++ + + A TS+ W L+ + +D + E+ G V+ +
Sbjct: 242 SADEITGMFISMMFAGHHTSSGTASWTLIELMRHRDAYAAVIDELDELYGDGRSVSFHAL 301
Query: 203 TSMSYLAACINETHR 217
+ L + ET R
Sbjct: 302 RQIPQLENVLKETLR 316
Score = 30.0 bits (68), Expect = 0.75
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRVT 127
G+ C+G A M S L+++Y
Sbjct: 390 GRHRCVGAAFAIMQIKAIFSVLLREYEFE 418
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 54.2 bits (131), Expect = 9e-09
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
++ H + EA EP R+DP R + + F+ F G C+G + + L
Sbjct: 352 IIACSPLLSHHDEEAFPEPRRWDPERDEKVEGA--FIGFGAGVHKCIGQKFGLLQVKTIL 409
Query: 61 SNL 63
+
Sbjct: 410 ATA 412
Score = 45.3 bits (108), Expect = 8e-06
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 161 DTSTILMRWFLLVMAMEQDV--QDTLRAEITSKSSGTIVTLDDITSMSYLAACINETHR 217
TS+I W +L + +V + LR EI + + + M + C E+ R
Sbjct: 267 HTSSITTTWSMLHLMHPANVKHLEALRKEIEEFP-AQLNYNNVMDEMPFAERCARESIR 324
Score = 27.2 bits (61), Expect = 4.7
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRVT 127
G C+G + + L+ + Y
Sbjct: 391 GVHKCIGQKFGLLQVKTILATAFRSYDFQ 419
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 52.6 bits (127), Expect = 3e-08
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 20/120 (16%)
Query: 116 FLSNLIKQ---YRVTYESA----FLQ---EAKSNPEIYTSKQLYHLLGDL-------FGA 158
FL +K+ R+ FLQ +++++ E + K L +L A
Sbjct: 226 FLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALS--DLELVAQSIIFIFA 283
Query: 159 SLDTSTILMRWFLLVMAMEQDVQDTLRAEITSK-SSGTIVTLDDITSMSYLAACINETHR 217
+T++ ++ + + +A DVQ L+ EI + + T D + M YL +NET R
Sbjct: 284 GYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLR 343
Score = 48.7 bits (117), Expect = 6e-07
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 2 VIPFLYSIHMNGEAHQEPHRFDPGRFLQDKL----PAQFMPFQVGKRMCMGGELARM 54
+IP Y++H + + EP +F P RF + P + PF G R C+G A M
Sbjct: 373 MIP-SYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALM 428
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 52.6 bits (127), Expect = 3e-08
Identities = 11/58 (18%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 161 DTSTILMRWFLLVMAMEQDVQDTLRAEITSK-SSGTIVTLDDITSMSYLAACINETHR 217
+TS + + ++ ++ + ++ L+AE+ S + +D+ + YL+ + E+ R
Sbjct: 257 ETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSKRYLDFEDLGRLQYLSQVLKESLR 314
Score = 43.8 bits (104), Expect = 2e-05
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD--KLPAQFMPFQVGKRMCMGGELARMIATL 58
++ Y + ++P F+P RF K + PF +G R C+G + A+M +
Sbjct: 342 PLLFSTYVMGRMDTYFEDPLTFNPDRFGPGAPKPRFTYFPFSLGHRSCIGQQFAQMEVKV 401
Query: 59 FLSNL 63
++ L
Sbjct: 402 VMAKL 406
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 52.6 bits (126), Expect = 3e-08
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 151 LLGDLFGASLDTSTILMRWFLLVMAME-----QDVQDTLRAEITS--KSSGTIVTLDDIT 203
+L A+ + M+ M V + L EI S KS+G +T+ I
Sbjct: 283 ATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGELTMGAIE 342
Query: 204 SMSYLAACINETHR 217
M + + E R
Sbjct: 343 KMELTKSVVYECLR 356
Score = 46.8 bits (111), Expect = 2e-06
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDK----LPAQFMPF-------QVGKRMCMGG 49
M+ + + + F P RF+ ++ L VG + C G
Sbjct: 388 MLYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAGK 447
Query: 50 ELARMIATLFLSNL 63
+ ++A LF+ +
Sbjct: 448 DFVVLVARLFVIEI 461
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 52.3 bits (126), Expect = 4e-08
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 14/76 (18%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD-------------KLPAQFMPFQVGKRMCM 47
V PF S M+ + HQ+P F RFL ++ +P+ +C
Sbjct: 355 CVFPF-ISPQMDPQIHQQPEMFQFDRFLNADRTEKKDFFKNGARVKYPSVPWGTEDNLCP 413
Query: 48 GGELARMIATLFLSNL 63
G A + +
Sbjct: 414 GRHFAVHAIKELVFTI 429
Score = 49.2 bits (118), Expect = 4e-07
Identities = 7/75 (9%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Query: 143 YTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDI 202
++ + + + W + + + +R EI + + +
Sbjct: 249 IDAEMQRRAMLLQLWVTQGNAGPAAFWVMGYLLTHPEALRAVREEI--QGGKHLRLEERQ 306
Query: 203 TSMSYLAACINETHR 217
+ + + ET R
Sbjct: 307 KNTPVFDSVLWETLR 321
Score = 29.2 bits (66), Expect = 1.2
Identities = 6/47 (12%), Positives = 13/47 (27%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRVTYESAFLQEAKSNPEIYTS 145
+C G A + ++ ++ V +P Y
Sbjct: 408 EDNLCPGRHFAVHAIKELVFTILTRFDVELCDKNATVPLVDPSRYGF 454
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 51.4 bits (123), Expect = 9e-08
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD-KLPAQFMPF---------QVGKRMCMGGE 50
M+ + + + P + P RF+ D + +++ + V + C G +
Sbjct: 371 MLFGYQPFATKDPKVFDRPEEYVPDRFVGDGEALLKYVWWSNGPETESPTVENKQCAGKD 430
Query: 51 LARMIATLFLSNL 63
+I LF+ L
Sbjct: 431 FVVLITRLFVIEL 443
Score = 50.6 bits (121), Expect = 1e-07
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 133 LQEAKSNPEIYTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAME-QDVQDTLRAEITS- 190
+ E + + ++++L + + IL L + + +++ L EI
Sbjct: 251 VMEQAEKLGVPKDEAVHNILFAVCFNTFGGVKILFPNTLKWIGLAGENLHTQLAEEIRGA 310
Query: 191 --KSSGTIVTLDDITSMSYLAACINETHR 217
VTL+ I M + + E+ R
Sbjct: 311 IKSYGDGNVTLEAIEQMPLTKSVVYESLR 339
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 49.6 bits (119), Expect = 3e-07
Identities = 9/57 (15%), Positives = 21/57 (36%)
Query: 161 DTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDITSMSYLAACINETHR 217
+T++ L+ + L + V E + + + + Y+ +NE R
Sbjct: 267 ETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALR 323
Score = 41.9 bits (99), Expect = 1e-04
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 16/102 (15%)
Query: 1 MVIPFLYSIHMNGEA-HQEPHRFDPGRFL--QDKLPAQFMPFQVGKRMCMGGELARMIAT 57
++ + +H + + F P RF F PF G+R C+G + A AT
Sbjct: 352 ELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEAT 411
Query: 58 LFLSNLNQIPISPLS--SVRLATYYQVD----LTLTPDQIHL 93
L L + L T Y++D LTL P+ +
Sbjct: 412 LVLGMM-------LKHFDFEDHTNYELDIKETLTLKPEGFVV 446
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 47.6 bits (114), Expect = 1e-06
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 17/96 (17%)
Query: 1 MVIPFLYSIH-MNGEAHQEPHRFDPGRFL--QDKLPAQFMPFQVGKRMCMGGELARMIAT 57
++ Y ++ + F P RFL + ++ PF +G+R+C+G + A +
Sbjct: 291 TLVLSPYVTQRLHFP---DGEAFRPERFLEERGTPSGRYFPFGLGQRLCLGRDFALLEGP 347
Query: 58 LFLSNLNQIPISPLSSVRLATYYQVD----LTLTPD 89
+ L RL +TL P+
Sbjct: 348 IVLRAF-------FRRFRLDPLPFPRVLAQVTLRPE 376
Score = 31.4 bits (72), Expect = 0.21
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 155 LFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEI 188
L A +T + W L+++ D Q +
Sbjct: 218 LLVAGHETVASALTWSFLLLSHRPDWQKRVAESE 251
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 4e-04
Identities = 29/206 (14%), Positives = 59/206 (28%), Gaps = 78/206 (37%)
Query: 59 FLSNLNQIPISPLSSVR--LATYYQVDLTL--TPDQIHLSGL----PDGKRMCMGGELAR 110
+ L Q + L + + Y + D+ S L +G A+
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN--------AQ 155
Query: 111 MIATLF---------LSNLIKQYRVTYES---AFLQEAKSNPEIYTSKQLYHLLGD---- 154
++A +F L Y+ TY ++ + ++ L L+
Sbjct: 156 LVA-IFGGQGNTDDYFEELRDLYQ-TYHVLVGDLIKFS--------AETLSELIRTTLDA 205
Query: 155 --LFGASLDTSTILMRW-----------FLL-------VMAMEQDVQ--DTLR------A 186
+F L+ ++ W +LL ++ + Q T +
Sbjct: 206 EKVFTQGLN----ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 187 EITSKSSGTIVTLDDITSMSYLAACI 212
E+ S G + + A I
Sbjct: 262 ELRSYLKGATGHSQGLVT----AVAI 283
Score = 33.5 bits (76), Expect = 0.061
Identities = 57/283 (20%), Positives = 83/283 (29%), Gaps = 117/283 (41%)
Query: 2 VIPFLYSIHMNG-EAHQE-PHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLF 59
I L+ I G ++ P+ P L+D L E
Sbjct: 299 AITVLFFI---GVRCYEAYPNTSLPPSILEDSLE--------------NNE--------- 332
Query: 60 LSNLNQIPISPLSSVRLATYYQVDLTLTPDQIHLSGLPDGKRMCMGGELARMIATLFLSN 119
+P SP+ S+ T QV + HL P GK++ I+ L N
Sbjct: 333 -----GVP-SPMLSISNLTQEQVQDYVNKTNSHL---PAGKQVE--------IS---LVN 372
Query: 120 LIKQYRVTYESAFLQEAKSNPEIYTSKQLYHLLGDL----FGASLDTSTILMR------- 168
K V+ P+ LY L L + LD S I
Sbjct: 373 GAKNLVVS----------GPPQ-----SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 169 -WFL----------LVMAMEQDVQDTLRAEITSKSS--GTIV--TLD--DITSMSY---- 207
FL LV A + +D ++ ++ + V T D D+ +S
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 208 -LAACI-------------NETHRYRTIVTLGTPDQVYLSSGL 236
+ CI TH I+ G P SGL
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATH----ILDFG-PGGA---SGL 512
Score = 31.2 bits (70), Expect = 0.35
Identities = 43/256 (16%), Positives = 72/256 (28%), Gaps = 78/256 (30%)
Query: 34 AQFMPFQVGKRMCMGGEL------ARMI---ATLFLSNLNQIPISPLSSVRLATYYQVDL 84
+Q + G MG +L A+ + A + S L V +
Sbjct: 1626 SQ----EQG----MGMDLYKTSKAAQDVWNRADNHF--KDTYGFSILDIVINNP-----V 1670
Query: 85 TLTPDQIHLSGLPDGKR-----MCMGGELA----RMIATLFLSNLIKQYRVTYES----- 130
LT IH G GKR M E +F T+ S
Sbjct: 1671 NLT---IHFGG-EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 131 ---AFLQEAKSNPEIYT-SKQLYHLL--------GDLF-GASL----------------D 161
F Q P + K + L F G SL
Sbjct: 1727 SATQFTQ-----PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES 1781
Query: 162 TSTIL-MRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDITSMSYLAACI-NETHRYR 219
++ R + +A+ +D + + + G + ++ Y+ + T
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 220 TIVTLGTPDQVYLSSG 235
IV +Q Y+++G
Sbjct: 1842 EIVNYNVENQQYVAAG 1857
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 33.5 bits (77), Expect = 0.058
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
V+ + + + + E EP R D R A EL +AT L
Sbjct: 292 EVVVVVAAANRDPEVFAEPDRLDVDR-----PDADRALSAHRGHPGRLEELVTALATAAL 346
Query: 61 SNL 63
Sbjct: 347 RAA 349
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 33.0 bits (76), Expect = 0.071
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
+I S + + E + P F+ R P + F G C+ LA+ T
Sbjct: 311 GIIASNQSANRDEEVFENPDEFNMNR---KWPPQDPLGFGFGDHRCIAEHLAKAELTTVF 367
Query: 61 SNL 63
S L
Sbjct: 368 STL 370
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 31.8 bits (73), Expect = 0.16
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
+V+ L + + E P + R P + F G+ C G L R I
Sbjct: 304 LVLVLLEGANFDPEHFPNPGSIELDR----PNPTSHLAFGRGQHFCPGSALGRRHAQIGI 359
Query: 56 ATLF 59
L
Sbjct: 360 EALL 363
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.21
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 15/66 (22%)
Query: 143 YTSKQLYHLLGDLFGASLDTSTILMRWFLLVMAMEQDVQDTLRAEITSKSSGTIVTLDDI 202
Y K + + D F + D +DVQD ++ ++ + I+ D
Sbjct: 16 YQYKDILSVFEDAFVDNFDC---------------KDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 203 TSMSYL 208
S +
Sbjct: 61 VSGTLR 66
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 31.1 bits (71), Expect = 0.33
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
++ + + + + H++ FD R + + F G C+G LARM +
Sbjct: 314 PILASYAAANRHPDWHEDADTFDATR-----TVKEHLAFGHGVHFCLGAPLARMEVTLAL 368
Query: 56 ATLF 59
+LF
Sbjct: 369 ESLF 372
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 31.1 bits (71), Expect = 0.35
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
VI L + + + + R D R P + F G C+G LAR+
Sbjct: 307 SVICSLPAANRDPALAPDVDRLDVTR-----EPIPHVAFGHGVHHCLGAALARLELRTVF 361
Query: 56 ATLF 59
L+
Sbjct: 362 TELW 365
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 30.7 bits (70), Expect = 0.41
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
V+ + + + +P D R + F G C+G LAR
Sbjct: 316 YVLCSILMANRDEALTPDPDVLDANR-----AAVSDVGFGHGIHYCVGAALARSMLRMAY 370
Query: 56 ATLF 59
TL+
Sbjct: 371 QTLW 374
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 30.7 bits (70), Expect = 0.41
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
+V+ L + + A P FD R P + F G C+G LAR+
Sbjct: 313 LVLFDLGLPNFDERAFTGPEEFDAAR-----TPNPHLTFGHGIWHCIGAPLARLELRTMF 367
Query: 56 ATLF 59
LF
Sbjct: 368 TKLF 371
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 30.3 bits (69), Expect = 0.51
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
V+ L H E +PHRFD R A + F G C+G LAR+ +
Sbjct: 334 TVLVVLADAHRTPERFPDPHRFDIRR-----DTAGHLAFGHGIHFCIGAPLARLEARIAV 388
Query: 56 ATLF 59
L
Sbjct: 389 RALL 392
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 30.3 bits (69), Expect = 0.52
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
V+ + ++ + +A++ P FD R + F G C+G LAR +
Sbjct: 313 AVLVSITLMNRDAKAYENPDIFDARR-----NARHHVGFGHGIHQCLGQNLARAELEIAL 367
Query: 56 ATLF 59
LF
Sbjct: 368 GGLF 371
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 30.3 bits (69), Expect = 0.56
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
V+ + + + + R D R P Q + F G C+G LAR+ +
Sbjct: 326 PVLASTGAANRDQAQFPDADRIDVDR-----TPNQHLGFGHGVHHCLGAPLARVELQVAL 380
Query: 56 ATLF 59
L
Sbjct: 381 EVLL 384
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 30.4 bits (69), Expect = 0.56
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 18 EPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNL 63
+P F PGR P + + F G C+G LAR+ ++ L L
Sbjct: 341 DPDTFLPGRK-----PNRHITFGHGMHHCLGSALARIELSVVLRVL 381
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 30.3 bits (69), Expect = 0.56
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
VI L + + E +P R D R + F G C+G LAR+ +
Sbjct: 320 GVIALLAGANHDPEQFDDPERVDFHR-----TDNHHVAFGYGVHQCVGQHLARLELEVAL 374
Query: 56 ATLF 59
TL
Sbjct: 375 ETLL 378
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 30.3 bits (69), Expect = 0.64
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
VI + S + + ++P D R + F G C+G LARM
Sbjct: 316 GVIVSMLSANWDPAVFKDPAVLDVER-----GARHHLAFGFGPHQCLGQNLARMELQIVF 370
Query: 56 ATLF 59
TLF
Sbjct: 371 DTLF 374
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 29.9 bits (68), Expect = 0.70
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
V + + + E +P R D R P + F G C GG LAR+ +
Sbjct: 313 AVYVSYLAANRDPEVFPDPDRIDFER-----SPNPHVSFGFGPHYCPGGMLARLESELLV 367
Query: 56 ATLF 59
+
Sbjct: 368 DAVL 371
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 29.9 bits (68), Expect = 0.71
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
VI + +G +++P D R + F G C+G LAR+ +
Sbjct: 315 GVIVVNSIANRDGTVYEDPDALDIHR-----SARHHLAFGFGVHQCLGQNLARLELEVIL 369
Query: 56 ATLF 59
L
Sbjct: 370 NALM 373
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 29.9 bits (68), Expect = 0.75
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
V+ + + + +EP RFD R PA + F G C+G +LAR+
Sbjct: 308 QVVAHVLAADFDPAFVEEPERFDITR-----RPAPHLAFGFGAHQCIGQQLARIELQIVF 362
Query: 56 ATLF 59
TLF
Sbjct: 363 ETLF 366
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 29.9 bits (68), Expect = 0.79
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
V + + + + +P R D R P + + G C G LARM +
Sbjct: 316 PVYVSYLAANRDPDVFPDPDRIDLDR-----DPNPHLAYGNGHHFCTGAVLARMQTELLV 370
Query: 56 ATLF 59
TL
Sbjct: 371 DTLL 374
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 29.6 bits (67), Expect = 0.86
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 14 EAHQEPHRFDPGRFLQDKLPAQFMP-----FQVGKRMCMGGELARMIATLFLSNL 63
EA ++P F+ R A F G C+G A+ + + +
Sbjct: 352 EAFEQPDVFNIHREDLGIKSAFSGAARHLAFGSGIHNCVGTAFAKNEIEIVANIV 406
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 29.5 bits (67), Expect = 0.92
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 18 EPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNL 63
P F R P Q + F G C+G LA M + +
Sbjct: 352 RPEEFIIDR----PRPRQHLSFGFGIHRCVGNRLAEMQLRILWEEI 393
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 29.5 bits (67), Expect = 0.93
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
MV+ L + + + + EP R D R + + F G C+G +LAR+ I
Sbjct: 307 MVMLGLAAANRDADWMPEPDRLDITR-----DASGGVFFGHGIHFCLGAQLARLEGRVAI 361
Query: 56 ATLF 59
LF
Sbjct: 362 GRLF 365
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 29.5 bits (67), Expect = 0.99
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
V+ + + + + +PHRFD R + F G CMG LA++ +
Sbjct: 311 TVLVANGAANRDPKQFPDPHRFDVTR-----DTRGHLSFGQGIHFCMGRPLAKLEGEVAL 365
Query: 56 ATLF 59
LF
Sbjct: 366 RALF 369
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 28.8 bits (65), Expect = 1.7
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 18 EPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNL 63
P FD RF P + + F G MC+G LA++ +F L
Sbjct: 354 NPDEFDITRF-----PNRHLGFGWGAHMCLGQHLAKLEMKIFFEEL 394
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 28.7 bits (65), Expect = 2.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 18 EPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNL 63
EP F GR + F +G MC+G LAR+ A++ L+++
Sbjct: 273 EPDLFKIGR------REMHLAFGIGIHMCLGAPLARLEASIALNDI 312
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 28.4 bits (64), Expect = 2.3
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 14 EAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNL 63
E +P FD R ++ + F +G C G ++R AT + L
Sbjct: 316 EVFDDPDVFDHTR---PPAASRNLSFGLGPHSCAGQIISRAEATTVFAVL 362
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 28.3 bits (64), Expect = 2.4
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 1 MVIPFLYSIHMNGEAHQE-PHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM----- 54
+I ++ + AH RFD R + + F G +C G L+RM
Sbjct: 313 ALIVSYGALGRDERAHGPTADRFDLTR----TSGNRHISFGHGPHVCPGAALSRMEAGVA 368
Query: 55 IATLF 59
+ L+
Sbjct: 369 LPALY 373
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes,
trafficking complex, vacuole protei sorting, ESCRT
protein complexes; HET: DDQ; 2.10A {Saccharomyces
cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Length = 109
Score = 26.8 bits (59), Expect = 3.0
Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 14/72 (19%)
Query: 168 RWFLLVMAMEQDVQDTLRAEITSKSSGTIVTL---------DDITSMSYLAACINETHRY 218
+ + + +++V +TL +EI S ++TL D I Y ++
Sbjct: 15 LFDNSITSKDKEVIETL-SEIYS----IVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQF 69
Query: 219 RTIVTLGTPDQV 230
+ + +++
Sbjct: 70 KVYLNSQNKEEI 81
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 28.0 bits (63), Expect = 3.0
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
++ L + H + P RFDP R + + F G C+G LAR+ AT+ L
Sbjct: 326 TMLLLLAAAHRDPTIVGAPDRFDPDR-----AQIRHLGFGKGAHFCLGAPLARLEATVAL 380
Query: 61 SNL 63
L
Sbjct: 381 PAL 383
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 28.0 bits (63), Expect = 3.0
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
V L + + + P FD R P + F G +C+G LAR+ I
Sbjct: 304 QVYLLLGAANRDPSIFTNPDVFDITR-----SPNPHLSFGHGHHVCLGSSLARLEAQIAI 358
Query: 56 ATLF 59
TL
Sbjct: 359 NTLL 362
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 28.0 bits (63), Expect = 3.2
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
++ ++ + P D R F G +C+G LAR + L
Sbjct: 318 QILLPQMLSGLDERENACPMHVDFSRQ-----KVSHTTFGHGSHLCLGQHLARREIIVTL 372
Query: 61 SNL 63
Sbjct: 373 KEW 375
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 27.9 bits (63), Expect = 3.3
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
+V+ + + + + P FD R P M F G R C+G LAR +
Sbjct: 303 VVVVLAGAANRDPRRYDRPDDFDIER-----DPVPSMSFGAGMRYCLGSYLARTQLRAAV 357
Query: 61 SNLNQIP 67
+ L ++P
Sbjct: 358 AALARLP 364
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 27.7 bits (62), Expect = 3.8
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 18 EPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNL 63
EP +FDP R + + F G C+G LAR+ + L L
Sbjct: 376 EPRKFDPTRP-----ANRHLAFGAGSHQCLGLHLARLEMRVLLDVL 416
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 27.7 bits (62), Expect = 3.9
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
M++ ++ A+ EP + D R F G C G LARM + L
Sbjct: 324 MILLPTALHGLDDAANPEPWKLDFSRR-----SISHSTFGGGPHRCAGMHLARMEVIVTL 378
Query: 61 SNL 63
Sbjct: 379 EEW 381
>2p22_B Vacuolar protein sorting-associated protein 28; endosome,
trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A
{Saccharomyces cerevisiae}
Length = 118
Score = 26.4 bits (58), Expect = 4.3
Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 14/72 (19%)
Query: 168 RWFLLVMAMEQDVQDTLRAEITSKSSGTIVTL---------DDITSMSYLAACINETHRY 218
+ + + +++V +TL +EI S ++TL D I Y ++
Sbjct: 24 LFDNSITSKDKEVIETL-SEIYS----IVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQF 78
Query: 219 RTIVTLGTPDQV 230
+ + +++
Sbjct: 79 KVYLNSQNKEEI 90
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein
transport, ESCRT, MVB, multivesicular bodies, endosome,
lysosome, PH domain, protein sorting; 3.6A
{Saccharomyces cerevisiae} SCOP: a.2.17.2
Length = 155
Score = 26.9 bits (59), Expect = 4.3
Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 16/85 (18%)
Query: 168 RWFLLVMAMEQDVQDTLRAEITSKSSGTIVTL---------DDITSMSYLAACINETHRY 218
+ + + +++V +TL +EI S ++TL D I Y ++
Sbjct: 32 LFDNSITSKDKEVIETL-SEIYS----IVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQF 86
Query: 219 RTIVTLGTPDQVYLSSGLPDSERLA 243
+ + +++ + E
Sbjct: 87 KVYLNSQNKEEI--NKHFQSIEAFC 109
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 27.2 bits (61), Expect = 5.3
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 18 EPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNL 63
EP +FD R P + F G C+G +LAR+ +L +
Sbjct: 317 EPEKFDVQRN-----PNSHLAFGFGTHFCLGNQLARLELSLMTERV 357
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 27.2 bits (61), Expect = 5.9
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 18 EPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM 54
+P F P R P + F G +C+G LAR+
Sbjct: 294 DPDSFIPDRT-----PNPHLSFGSGIHLCLGAPLARL 325
>1aym_2 HRV16, human rhinovirus 16 coat protein; RNA, site-directed
mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A
{Human rhinovirus SP} PDB: 1ayn_2* 1ncr_B* 1nd2_B*
1nd3_B* 1qju_2* 1qjx_2* 1qjy_2* 1c8m_2* 1d3e_2 1r1a_2*
2hwd_2* 2hwe_2* 2hwf_2* 1fpn_2* 1v9u_2* 3dpr_B* 3tn9_2
Length = 261
Score = 26.8 bits (59), Expect = 5.9
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 66 IPISPLSSVRLATYYQVDLTLTPDQIHLSGL 96
IP+ L S ++ + ++++P SG
Sbjct: 224 IPVCQLQSNNISNIVPITVSISPMCAEFSGA 254
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 26.8 bits (60), Expect = 6.3
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----I 55
MV + S +G P FD R + + + G +C G LAR+ +
Sbjct: 325 MVFLLIPSALRDGTVFSRPDVFDVRR-----DTSASLAYGRGPHVCPGVSLARLEAEIAV 379
Query: 56 ATLF 59
T+F
Sbjct: 380 GTIF 383
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 26.8 bits (60), Expect = 6.4
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 18 EPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNL 63
+P RFDP R A + F G C+G LAR+ + L +
Sbjct: 328 DPDRFDPSR---KSGGAAQLSFGHGVHFCLGAPLARLENRVALEEI 370
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics,
PSI-2, protein structure initiative, midwest center for
structural genomics; 1.80A {Shigella flexneri} SCOP:
d.58.4.18
Length = 141
Score = 25.9 bits (57), Expect = 7.6
Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 1/13 (7%)
Query: 37 MPFQVGKRMCMGG 49
MPF GKRM GG
Sbjct: 123 MPFD-GKRMIYGG 134
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 26.8 bits (60), Expect = 7.7
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 18 EPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM 54
+ +F P R P + F G +C+G LAR+
Sbjct: 294 DGEKFIPDRN-----PNPHLSFGSGIHLCLGAPLARL 325
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 26.8 bits (59), Expect = 7.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 96 LPDGKRMCMGGELARMIATL 115
LP+G M M G+ +M+ TL
Sbjct: 628 LPEGVEMVMPGDNIKMVVTL 647
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 26.5 bits (59), Expect = 7.9
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 18 EPHRFDPGRFLQDKLPAQFMPFQ-VGKRMCMGGELARMIATLFLSNL 63
+P FD R P + F G C+G LAR + L
Sbjct: 362 DPWTFDLARN-----PNPHLGFGGGGAHFCLGANLARREIRVAFDEL 403
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 26.8 bits (60), Expect = 7.9
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 10/47 (21%)
Query: 18 EPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM-----IATLF 59
RFD R A M F G C+G LAR+ + +
Sbjct: 309 PGDRFDITR-----EKATHMAFGHGIHHCIGAPLARLQLRVALPAVV 350
>3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase,
structural medical structural genomics of pathogenic
protozoa consorti MSGPP; HET: R1P; 1.44A {Trypanosoma
brucei}
Length = 349
Score = 26.5 bits (57), Expect = 8.1
Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 6/90 (6%)
Query: 40 QVGKRMCMGGELARM--IATLFLSNLNQIPISPLSSVRLATYYQVDLTLTPDQIHLSGLP 97
++ R+ G+ R+ I+ F + I R + TP + +G+
Sbjct: 41 ELADRIIFVGDPGRVDVISGYFDKD----SIRASRDHREIRFATGTYKGTPVTVISTGMG 96
Query: 98 DGKRMCMGGELARMIATLFLSNLIKQYRVT 127
+ E+ + + +
Sbjct: 97 VDNIEIVLNEIHALKEYDMERGQWRHRKGD 126
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 26.5 bits (59), Expect = 9.3
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 19 PHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNL 63
D R P + F G C+G ARM + L+ L
Sbjct: 339 AAELDVTR-----CPRNILTFSHGAHHCLGAAAARMQCRVALTEL 378
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 26.5 bits (59), Expect = 9.6
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
+++ ++ H +P D R F G C G LAR+ T+ L
Sbjct: 325 LILLPTALHGLDDRHHDDPMTVDLSRR-----DVTHSTFAQGPHRCAGMHLARLEVTVML 379
Query: 61 SNL 63
Sbjct: 380 QEW 382
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 26.4 bits (59), Expect = 9.7
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 18 EPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARM 54
+P R+D R + + F G MC+G +AR+
Sbjct: 338 DPDRYDITR-----KTSGHVGFGSGVHMCVGQLVARL 369
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.396
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,693,834
Number of extensions: 210994
Number of successful extensions: 649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 144
Length of query: 243
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 152
Effective length of database: 4,160,982
Effective search space: 632469264
Effective search space used: 632469264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.3 bits)