RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16032
(243 letters)
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 63.7 bits (153), Expect = 2e-12
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
++ S + + E P FD RF P + + F G MC+G LA++ +F
Sbjct: 337 RIMLSYPSANRDEEVFSNPDEFDITRF-----PNRHLGFGWGAHMCLGQHLAKLEMKIFF 391
Query: 61 SNL 63
L
Sbjct: 392 EEL 394
Score = 35.9 bits (81), Expect = 0.003
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYR 125
G MC+G LA++ +F L+ + +
Sbjct: 373 GAHMCLGQHLAKLEMKIFFEELLPKLK 399
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 63.6 bits (153), Expect = 3e-12
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKL----PAQFMPFQVGKRMCMGGELARMIA 56
+V+ Y++H + + EP +F P RF + P + PF G R C+G A M
Sbjct: 366 VVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNM 425
Query: 57 TLFLSNL 63
L L +
Sbjct: 426 KLALIRV 432
Score = 36.2 bits (82), Expect = 0.003
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRV 126
G R C+G A M L L +++ +
Sbjct: 411 GPRNCIGMRFALMNMKLALIRVLQNFSF 438
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 62.4 bits (150), Expect = 6e-12
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD----KLPAQFMPFQVGKRMCMGGELARMIA 56
V P L S + + P+ F+PG FL K FMPF +GKR+C+G +AR
Sbjct: 360 EVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGIARTEL 419
Query: 57 TLFLSNL 63
LF + +
Sbjct: 420 FLFFTTI 426
Score = 35.8 bits (81), Expect = 0.004
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRV 126
GKR+C+G +AR LF + +++ + +
Sbjct: 405 GKRICLGEGIARTELFLFFTTILQNFSI 432
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 61.3 bits (147), Expect = 1e-11
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQD----KLPAQFMPFQVGKRMCMGGELARMIA 56
++ L S+ + + P FDP FL + K FMPF GKR+C+G LA M
Sbjct: 361 TILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAGMEL 420
Query: 57 TLFLSNL 63
LFL+++
Sbjct: 421 FLFLTSI 427
Score = 37.0 bits (84), Expect = 0.002
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRV 126
GKR+C+G LA M LFL+++++ + +
Sbjct: 406 GKRICVGEALAGMELFLFLTSILQNFNL 433
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 61.0 bits (146), Expect = 2e-11
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
+I S + + E + P F+ R P + F G C+ LA+ T
Sbjct: 306 GIIASNQSANRDEEVFENPDEFNMNRKWP---PQDPLGFGFGDHRCIAEHLAKAELTTVF 362
Query: 61 SNL 63
S L
Sbjct: 363 STL 365
Score = 35.2 bits (79), Expect = 0.006
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQY 124
G C+ LA+ T S L +++
Sbjct: 344 GDHRCIAEHLAKAELTTVFSTLYQKF 369
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 60.5 bits (145), Expect = 3e-11
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 6 LYSIHMNGEAHQEPHRFDPGRFLQD----KLPAQFMPFQVGKRMCMGGELARMIATLFLS 61
LYS+H + + ++P F P RFL +PF +G+R C+G LARM LF +
Sbjct: 365 LYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEHLARMEMFLFFT 424
Query: 62 NL 63
L
Sbjct: 425 AL 426
Score = 35.9 bits (81), Expect = 0.003
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRV 126
G+R C+G LARM LF + L++++ +
Sbjct: 405 GRRHCLGEHLARMEMFLFFTALLQRFHL 432
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 59.8 bits (143), Expect = 5e-11
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
++ + + + + H++ FD R + + F G C+G LARM TL L
Sbjct: 308 PILASYAAANRHPDWHEDADTFDATRT-----VKEHLAFGHGVHFCLGAPLARMEVTLAL 362
Query: 61 SNL 63
+L
Sbjct: 363 ESL 365
Score = 35.5 bits (80), Expect = 0.005
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQY 124
G C+G LARM TL L +L ++
Sbjct: 344 GVHFCLGAPLARMEVTLALESLFGRF 369
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 59.5 bits (142), Expect = 5e-11
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
MV + S +G P FD R + + + G +C G LAR+ A + +
Sbjct: 310 MVFLLIPSALRDGTVFSRPDVFDVRRD-----TSASLAYGRGPHVCPGVSLARLEAEIAV 364
Query: 61 SNL 63
+
Sbjct: 365 GTI 367
Score = 36.0 bits (81), Expect = 0.003
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQY 124
G +C G LAR+ A + + + +++
Sbjct: 346 GPHVCPGVSLARLEAEIAVGTIFRRF 371
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 59.5 bits (142), Expect = 6e-11
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKL-----PAQFMPFQVGKRMCMGGELARMI 55
+V + E +PH F P R+ Q + ++PF G+ C+G A M
Sbjct: 340 LVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAIMQ 399
Query: 56 ATLFLSNL 63
S L
Sbjct: 400 IKAIFSVL 407
Score = 37.5 bits (85), Expect = 0.001
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRVT 127
G+ C+G A M S L+++Y
Sbjct: 386 GRHRCVGAAFAIMQIKAIFSVLLREYEFE 414
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 57.0 bits (136), Expect = 4e-10
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 1 MVIPFLYSIHMNGEAHQE-PHRFDPGRFLQDKL--PAQFMPFQVGKRMCMGGELARMIAT 57
++ + +H + + F P RF F PF G+R C+G + A AT
Sbjct: 350 ELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEAT 409
Query: 58 LFLSNL-NQIPISPLSSVRLATYYQVDLTLTPDQIHL 93
L L + ++ L + LTL P+ +
Sbjct: 410 LVLGMMLKHFDFEDHTNYELD--IKETLTLKPEGFVV 444
Score = 37.0 bits (84), Expect = 0.002
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRV 126
G+R C+G + A ATL L ++K +
Sbjct: 394 GQRACIGQQFALHEATLVLGMMLKHFDF 421
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 56.7 bits (135), Expect = 4e-10
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
V+ + + + +P D R + F G C+G LAR + +
Sbjct: 313 YVLCSILMANRDEALTPDPDVLDANRA-----AVSDVGFGHGIHYCVGAALARSMLRMAY 367
Query: 61 SNL 63
L
Sbjct: 368 QTL 370
Score = 34.7 bits (78), Expect = 0.007
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQY 124
G C+G LAR + + L +++
Sbjct: 349 GIHYCVGAALARSMLRMAYQTLWRRF 374
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 55.6 bits (132), Expect = 1e-09
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 7 YSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNL 63
+ + + + +PHRFD R + F G CMG LA++ + L L
Sbjct: 315 GAANRDPKQFPDPHRFDVTRD-----TRGHLSFGQGIHFCMGRPLAKLEGEVALRAL 366
Score = 35.2 bits (79), Expect = 0.005
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYR 125
G CMG LA++ + L L ++
Sbjct: 345 GIHFCMGRPLAKLEGEVALRALFGRFP 371
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 54.8 bits (130), Expect = 2e-09
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
VI L + + + + R D R P + F G C+G LAR+
Sbjct: 303 SVICSLPAANRDPALAPDVDRLDVTRE-----PIPHVAFGHGVHHCLGAALARLELRTVF 357
Query: 61 SNL 63
+ L
Sbjct: 358 TEL 360
Score = 35.1 bits (79), Expect = 0.006
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQY 124
G C+G LAR+ + L +++
Sbjct: 339 GVHHCLGAALARLELRTVFTELWRRF 364
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 54.0 bits (128), Expect = 3e-09
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
++ ++ + P D R F G +C+G LAR + L
Sbjct: 307 QILLPQMLSGLDERENACPMHVDFSRQ-----KVSHTTFGHGSHLCLGQHLARREIIVTL 361
Query: 61 SNL 63
Sbjct: 362 KEW 364
Score = 34.3 bits (77), Expect = 0.010
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQY 124
G +C+G LAR + L + +
Sbjct: 343 GSHLCLGQHLARREIIVTLKEWLTRI 368
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 54.0 bits (128), Expect = 3e-09
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
+V+ L + + E P + R P + F G+ C G L R A + +
Sbjct: 303 LVLVLLEGANFDPEHFPNPGSIELDRPN----PTSHLAFGRGQHFCPGSALGRRHAQIGI 358
Query: 61 SNL 63
L
Sbjct: 359 EAL 361
Score = 34.8 bits (78), Expect = 0.007
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQY 124
G+ C G L R A + + L+K+
Sbjct: 340 GQHFCPGSALGRRHAQIGIEALLKKM 365
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 54.1 bits (128), Expect = 3e-09
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFL 60
V ++ S + + E + +F P R P + F G +C+G LAR+ A + +
Sbjct: 277 YVRVWIASANRDEEVFHDGEKFIPDRN-----PNPHLSFGSGIHLCLGAPLARLEARIAI 331
Query: 61 SNL 63
Sbjct: 332 EEF 334
Score = 35.2 bits (79), Expect = 0.005
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYR 125
G +C+G LAR+ A + + K++R
Sbjct: 313 GIHLCLGAPLARLEARIAIEEFSKRFR 339
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 53.7 bits (127), Expect = 5e-09
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 1 MVIPFLYSIHMNGEAHQE-PHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLF 59
+I ++ + AH RFD R + + F G +C G L+RM A +
Sbjct: 306 ALIVSYGALGRDERAHGPTADRFDLTRTS----GNRHISFGHGPHVCPGAALSRMEAGVA 361
Query: 60 LSNL 63
L L
Sbjct: 362 LPAL 365
Score = 35.5 bits (80), Expect = 0.005
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQY 124
G +C G L+RM A + L L ++
Sbjct: 344 GPHVCPGAALSRMEAGVALPALYARF 369
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 53.2 bits (126), Expect = 6e-09
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 16 HQEPHRFDPGRFLQD--KLPAQFMPFQVGKRMCMGGELARMIATLFLSNL-NQIPISPLS 72
+ F P RFL++ ++ PF +G+R+C+G + A + + L + + PL
Sbjct: 304 FPDGEAFRPERFLEERGTPSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLP 363
Query: 73 SVRLATYYQVDLTLTPD 89
R+ +TL P+
Sbjct: 364 FPRVLA----QVTLRPE 376
Score = 36.7 bits (83), Expect = 0.002
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRVT 127
G+R+C+G + A + + L +++R+
Sbjct: 332 GQRLCLGRDFALLEGPIVLRAFFRRFRLD 360
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 52.9 bits (125), Expect = 1e-08
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 7 YSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNL 63
+ + + E +P R D R P + F G C GG LAR+ + L + +
Sbjct: 312 LAANRDPEVFPDPDRIDFERS-----PNPHVSFGFGPHYCPGGMLARLESELLVDAV 363
Score = 35.2 bits (79), Expect = 0.006
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQY 124
G C GG LAR+ + L + ++ +
Sbjct: 342 GPHYCPGGMLARLESELLVDAVLDRV 367
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 52.5 bits (124), Expect = 1e-08
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 7 YSIHMNGEAHQEPHRFDPGRFLQDKLPAQFMPFQVGKRMCMGGELARMIATLFLSNL 63
S + + E ++P F P R P + F G +C+G LAR+ A + L
Sbjct: 283 ASANRDEEVFKDPDSFIPDRT-----PNPHLSFGSGIHLCLGAPLARLEARIALEEF 334
Score = 36.7 bits (83), Expect = 0.002
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 99 GKRMCMGGELARMIATLFLSNLIKQYRV 126
G +C+G LAR+ A + L K++RV
Sbjct: 313 GIHLCLGAPLARLEARIALEEFAKKFRV 340
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 52.3 bits (124), Expect = 1e-08
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 1 MVIPFLYSIHMNGEAHQEPHRFDPGRFL-QDKLPAQFMPFQVGK----RMCMGGELARMI 55
V+ LY + + P F P RF +++ +P G C G + +
Sbjct: 308 SVLLDLYGTNHDPRLWDHPDEFRPERFAEREENLFDMIPQGGGHAEKGHRCPGEGITIEV 367
Query: 56 ATLFLSNL 63
L L
Sbjct: 368 MKASLDFL 375
Score = 36.2 bits (82), Expect = 0.003
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 94 SGLPDGKRMCMGGELARMIATLFLSNLIKQYRVT 127
G + C G + + L L+ Q
Sbjct: 349 GGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYD 382
>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426
(TTHA1462) {Thermus thermophilus [TaxId: 274]}
Length = 208
Score = 27.0 bits (59), Expect = 1.9
Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 13/146 (8%)
Query: 37 MPFQVGKRMCMGGELARMIATLFLSNLNQIPISPLSSVRLATYYQVDLTLTPDQIHLSGL 96
M F+ R G LA +A L L + + P V +A L D + + +
Sbjct: 1 MRFRD--RRHAGALLAEALAPLGLEAPVVLGL-PRGGVVVADEVARRLGGELDVVLVRKV 57
Query: 97 P-DGKRMCMGGELARMIATLFLSNLIKQYRVTY----ESAFLQEAKSNPEIYTSKQLYHL 151
G G + + + ++ +Y + + E Y +
Sbjct: 58 GAPGNPEFALGAVGEGGELVLMPYALRYADQSYLEREAARQRDVLRKRAERYRRVRPKAA 117
Query: 152 LGD----LFGASLDT-STILMRWFLL 172
L + T +++ ++
Sbjct: 118 RKGRDVVLVDDGVATGASMEAALSVV 143
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 206
Score = 27.0 bits (59), Expect = 1.9
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 139 NPEIYTSKQLYHLLGDLFGASLDTSTILMRW 169
EIY +L +L D +L
Sbjct: 73 AGEIYNRDELLSVLPAGPAPEGDAELVLRLL 103
>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
rhinovirus 16, (HRV-16) [TaxId: 31708]}
Length = 296
Score = 27.1 bits (60), Expect = 2.2
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 66 IPISPLSSVRLATYYQVDLTLTPDQIHLSGL 96
IP+ L S ++ + ++++P SG
Sbjct: 259 IPVCQLQSNNISNIVPITVSISPMCAEFSGA 289
>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated
protein 28, VPS28 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 104
Score = 25.2 bits (55), Expect = 4.2
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 16/76 (21%)
Query: 177 EQDVQDTLRAEITSKSSGTIVTL---------DDITSMSYLAACINETHRYRTIVTLGTP 227
+++V +TL +EI S ++TL D I Y +++ +
Sbjct: 19 DKEVIETL-SEIYS----IVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNK 73
Query: 228 DQVYLSSGLPDSERLA 243
+++ + E A
Sbjct: 74 EEI--NKHFQSIEAFA 87
>d1zmba1 c.23.10.7 (A:1-282) Acetylxylan esterase related enzyme
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 282
Score = 25.8 bits (56), Expect = 4.8
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 13/63 (20%)
Query: 83 DLTLTPDQIHLSGLPDGKRMCMGGELARMIATLFLSNLIKQYRVTYESAFLQEAKSNPEI 142
LT PD IH+ +R + F + +++ + E +
Sbjct: 198 GLTCNPDGIHID--AISQR-----KFGLRYFEAFFN---RKH---VLEPLINENELLNLN 244
Query: 143 YTS 145
Y
Sbjct: 245 YAR 247
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 25.5 bits (54), Expect = 7.7
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 190 SKSSGTIVTLDDI 202
S S G ++ L D+
Sbjct: 279 SGSKGNVILLSDL 291
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 188
Score = 25.0 bits (54), Expect = 9.1
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 80 YQVDLTLTPDQIH----LSGLPDGKRMCMGGE 107
+QVD+T D + +S D + G
Sbjct: 8 FQVDMTFDVDTANNYLIIS--EDLRSFRSGDL 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.396
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 877,219
Number of extensions: 37788
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 51
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.0 bits)