BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16039
(586 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NBX4|RTXE_DROME Probable RNA-directed DNA polymerase from transposon X-element
OS=Drosophila melanogaster GN=X-element\ORF2 PE=3 SV=1
Length = 908
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
Query: 146 KWSQANGLIFSTDPQKSVCVLFSRARNPSFPKLYYSGVELKFANSTKFLGLVWDSKLNWS 205
+W++ + ++ +VC R R P P +Y V + N+ K+LG++ D +L +S
Sbjct: 703 EWARRWNIGINSSKSNNVCFTLKR-RTP--PPVYIEEVPVPQPNAAKYLGVLLDRRLTFS 759
Query: 206 LHINYVKTRAAKALNALKMVCNKNYGVRRALLLVFYKSFILPIFDYGCVVYSSGKDHILK 265
H+ ++TR + + + + + L YK + P + YGC ++ D +K
Sbjct: 760 KHVTDIRTRLRAKVAKHYWLLSSRSKLSLSNKLTIYKQILAPNWKYGCQIWGLACDSHIK 819
Query: 266 RLNPIHNAGIRIATG 280
R+ I N R+ TG
Sbjct: 820 RIQAIQNKVARLITG 834
>sp|Q03269|PO11_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 337
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 131 GDKKILFRKTLDE----VLKWSQANGLIFSTDPQKSVCVLFSRARNPSFPKLYYSGVE-- 184
G+ ++ + DE V +W + G+ S +K+VC++ N ++ + E
Sbjct: 44 GNSRMEMERMADECMRIVYEWGREVGV--SISEKKTVCIMLKGKLNVDGRRMRVAVAEGT 101
Query: 185 ---LKFANSTKFLGLVWDSKLNWSLHINYVKTRAAKALNALKMVCNKNYGVRRALLLVFY 241
+ + S ++LG+ +++++ I + T+ A+ L+ V K +GV++ +
Sbjct: 102 ISSIGYVKSARYLGVCMGERMSFADDIRGLITKVMGAIGGLRRVMRKEWGVKKKTAYTWA 161
Query: 242 KSFILPIFDYGCVVYSSGKDHILKR--LNPIHNAGI 275
K +L YG V+ G + R +N I +
Sbjct: 162 KGLLLAGVMYGSSVWYEGMKYKTMRESMNSIQRCAM 197
>sp|Q03270|PO12_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 2 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 410
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 136 LFRKTLDEVLKWSQANGLIFSTDPQKSVCVLF-------SRARNPSFPKLYYSGVELKFA 188
+ + ++ V KW + G+ S +K+VC+L +RA S Y +K+
Sbjct: 53 VINEKMEIVYKWGEKMGV--SVSEEKTVCMLLKGKYVTSNRAVRVSKTINVYK--RIKYV 108
Query: 189 NSTKFLGLVWDSKLNWSLHINYVKTRAAKALNALKMVCNKNYGVRRALLLVFYKSFILPI 248
+ ++LG+ + + H+ +K + AK + LK V +++G+RRA + + LP
Sbjct: 109 SCFRYLGVNVTEGMGFGEHVRGMKVKVAKGVQKLKRVLRRDWGLRRAASHLVLRGTFLPQ 168
Query: 249 FDY 251
Y
Sbjct: 169 VSY 171
>sp|Q95SX7|RTBS_DROME Probable RNA-directed DNA polymerase from transposon BS
OS=Drosophila melanogaster GN=RTase PE=2 SV=1
Length = 906
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 12/189 (6%)
Query: 154 IFSTDPQKSVCVLFS-RARNPSFPKLYYSGVELKFANSTKFLGLVWDSKLNWSLHINYVK 212
I +PQK++ F+ + +P + GV L + K+LG+ D +L + H+
Sbjct: 713 ILKVNPQKTINPCFTLKTLSPVTAPIELEGVILDQPSQAKYLGITLDKRLTFGPHLKATT 772
Query: 213 TRAAKALNALKMVCNKNYGVRRALLLVFYKSFILPIFDYGCVVYSSGKDHILKRLNPIHN 272
R + + L+ + N+ + Y + PI+ YG ++ R+ + N
Sbjct: 773 RRCYQRMQQLRWLLNRKSTMTLRAKRAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQN 832
Query: 273 AGIRIATGALMTSPICSLYVESGIGPLSLRRDKIIMRYVSKIGSCPSNPAHKELYHTNIN 332
+R T C YV +L RD + +I S + + H +I
Sbjct: 833 RAMRAITD-------CPYYVRGT----TLHRDLNLHTVEEQISRHTSRYSDRLRRHHSIL 881
Query: 333 VNDFPPNKP 341
P +P
Sbjct: 882 ARRLLPARP 890
>sp|P21328|RTJK_DROME RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila melanogaster GN=pol PE=1 SV=1
Length = 916
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 29/230 (12%)
Query: 111 SAADRKDVIRFFFREEKREMGDKKILFRKT------LDEVLKWSQANGLIFSTDPQKSVC 164
+ D +DV+ + ++ + K + T LD +W A + +K
Sbjct: 667 TEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQW--AENWNVRINAEKCAN 724
Query: 165 VLFSRARNPSFPKLYYSGVELKFANSTKFLGLVWDSKLNWSLHINYV----KTRAAKA-- 218
V F+ R S P + +G ++ + K+LG+ D KL +S HI + +T+ A+
Sbjct: 725 VTFAN-RTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSW 783
Query: 219 ----LNALKMVCNKNYGVRRALLLVFYKSFILPIFDYGCVVYSSGKDHILKRLNPIHNAG 274
N L + C N YKS + P YG VY L ++ +
Sbjct: 784 LIAPRNKLSLGCKVN----------IYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKT 833
Query: 275 IRIATGALMTSPICSLYVESGIGPLSLRRDKIIMRYVSKIGSCPSNPAHK 324
+R +GA + + + L + I +Y+ ++ P++ A K
Sbjct: 834 LRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNSLARK 883
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 450 SELMAILLCVKNLIFLPSTNFTLISDSMSALLAISN--CKNDHPLVSLVYTTWLEAKDCG 507
+ELMAILL +++ +++DS AL IS+ +++ P+V + +E
Sbjct: 1063 AELMAILLALQD----SKETVNIVTDSQYALGVISSQPTQSESPIVQQI----IEELTKK 1114
Query: 508 KNLNFVWCPSHCGITGNELVD 528
+ + W P+H GI GNE +D
Sbjct: 1115 EQVYLTWVPAHKGIGGNEKID 1135
>sp|Q03271|PO13_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 3 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 383
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 161 KSVCVLFSRARNPSFPKLYYS--GVE---LKFANSTKFLGLVWDSKLNWSLHINYVKTRA 215
K+VC++ + N ++ S G++ ++ + ++LG+ +++S+HI+ +K R
Sbjct: 46 KTVCMMLKGSLNMLNRVVHVSTNGMDDKRIRCVDRVRYLGVNVGIGMDFSVHIDGMKRRL 105
Query: 216 AKALNALKMVCNKNYGVRRALLLVFYKSFILPIFDYGCVVY 256
A+ L+ V K++G++R ++ + K LP YG V+
Sbjct: 106 TTAIMRLRGVLRKSWGLKRGVVSMVVKGLFLPAVMYGASVW 146
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 24/145 (16%)
Query: 393 PPIVFQQHFHDLVTNKYSDSVLCFTDGSKTVNSTSCAYSIGNQVHAFKLNKVNSV----- 447
PP++ + ++ L T + + DG+ N+ +G + + K N +
Sbjct: 1008 PPLI--KLWYQLETEPIVGAETFYVDGAANRNT-----KLGKAGYVTEQGKQNIIKLEET 1060
Query: 448 --LSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAISN--CKNDHPLVSLVYTTWLEA 503
+ELMA+L+ +++ +++DS L IS+ ++D P+V + +E
Sbjct: 1061 TNQKAELMAVLIALQD----SKEQVNIVTDSQYVLGIISSQPTQSDSPIVQQI----IEE 1112
Query: 504 KDCGKNLNFVWCPSHCGITGNELVD 528
+ + W P+H GI GNE +D
Sbjct: 1113 LTKKERVYLTWVPAHKGIGGNEKID 1137
>sp|Q03272|PO14_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 4 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 392
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 40/95 (42%)
Query: 177 KLYYSGVELKFANSTKFLGLVWDSKLNWSLHINYVKTRAAKALNALKMVCNKNYGVRRAL 236
K+ G + F S ++LG+ +D+ L S H Y++ + + L+ + +G+
Sbjct: 77 KIELGGKSISFEQSVRYLGVHFDANLGISAHCKYLREKLVPLFSDLRKLAQCQWGLGHKA 136
Query: 237 LLVFYKSFILPIFDYGCVVYSSGKDHILKRLNPIH 271
L YK +P Y + H + L +H
Sbjct: 137 LETIYKGVFVPTVCYASARWYKEGAHTDRILEDLH 171
>sp|Q03277|PO11_SCICO Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Sciara coprophila PE=4 SV=1
Length = 1004
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 161 KSVCVLFS---RARNPSFPKLYYSGVELKFANSTKFLGLVWDSKLNWSLHINYVKTRAAK 217
K+ C+L A P P + +G + + + K LG+ ++N+ H Y++ +
Sbjct: 679 KTTCILMKGHLSANRP--PCIRLNGTSISYKSEVKHLGIFVAERMNFRPHFVYLRGKILG 736
Query: 218 ALNALKMVCNKNYGVRRALLLVFYKSFILPIFDYGCVVY 256
+ L+ V K++G+ R + YK + YG V+
Sbjct: 737 LVGCLRRVMRKSWGLGRRATCILYKGLFVACMSYGASVW 775
>sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1 retrotransposable element R1DM
OS=Drosophila melanogaster PE=4 SV=1
Length = 1021
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 5/174 (2%)
Query: 144 VLKWSQANGLIFSTDPQKSVCVLFSRARNPSFPKLYYSGVELKFANSTKFLGLVWDSKLN 203
V W G ST K+V +L A + P + ++G L + S ++LG+ +
Sbjct: 690 VETWGAEVGDCLST--SKTVIMLLKGALRRA-PTVRFAGRNLPYVRSCRYLGITVSEGMK 746
Query: 204 WSLHINYVKTRAAKALNALKMVCNKNYGVRRALLLVFYKSFILPIFDYGCVVYSSGKDHI 263
+ HI ++ R + AL V ++G Y + P +G V+ + +
Sbjct: 747 FLTHIASLRQRMTGVVGALARVLRADWGFSPRARRTIYDGLMAPCVLFGAPVWYDTAEQV 806
Query: 264 L--KRLNPIHNAGIRIATGALMTSPICSLYVESGIGPLSLRRDKIIMRYVSKIG 315
+RL + T +L V G PL L + ++Y K G
Sbjct: 807 AAQRRLASCQRLILLGCLSVCRTVSTVALQVLGGAPPLDLAAKLLAIKYKLKRG 860
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 393 PPIVFQQHFHDLVTNKYSDSVLCFTDGSKTVNSTSCAYSIGNQVHAFKLNKVNSVLS--S 450
PP+V + ++ L + + DG+ NS Q ++ K+ + + +
Sbjct: 1034 PPLV--KLWYTLTKEPIPKEDVYYVDGACNRNSREGKAGYITQYGKQRVEKLENTTNQQA 1091
Query: 451 ELMAILLCVKNLIFLPSTNFTLISDSMSAL--LAISNCKNDHPLVSLVYTTWLEAKDCGK 508
ELMAI + +++ N +++DS A+ L ++D PL+ + ++
Sbjct: 1092 ELMAIKMALED----SGPNVNIVTDSQYAMGILTAQPTQSDSPLIEQIIALMVQKH---- 1143
Query: 509 NLNFVWCPSHCGITGNELVD 528
+ W P+ GI GNE +D
Sbjct: 1144 QIYLQWVPADKGIGGNEEID 1163
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 441 LNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDS--MSALLAISNCKNDHPLVSLVYT 498
LN N +EL A+ L +++ + +++DS + +LA + DHP+V +
Sbjct: 1066 LNTTNQ--QTELHAVKLALED----SGSYVNIVTDSQYVVGILASRPTETDHPIVKEI-- 1117
Query: 499 TWLEAKDCGKNLNFVWCPSHCGITGNELVD 528
+E + + W P+H GI GNE +D
Sbjct: 1118 --IELMKGKEKIYLSWLPAHKGIGGNEQID 1145
>sp|Q11075|YWV1_CAEEL Uncharacterized protein B0403.1 OS=Caenorhabditis elegans
GN=B0403.1 PE=4 SV=1
Length = 198
Score = 37.0 bits (84), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 189 NSTKFLGLVWDSKLNWSLHINYVKTRAAKALNALKMVCNKNYGVRRALLLVFYKSFILPI 248
N L + D KLN+ HI YV A L + C + V +L Y ++ P+
Sbjct: 8 NKVNDLDIFVDCKLNFQKHIEYVSNSAFLKCRQL-LRCFRFTNV--SLYFKLYNVYVQPL 64
Query: 249 FDYGCVVYSSGKDHILKRL 267
+YGC VY+ ++K L
Sbjct: 65 LNYGCEVYNPNSKRLIKLL 83
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 37.0 bits (84), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 453 MAILLCVKNLIFLPSTNFTLISDSMSAL--LAISNCKNDHPLVSLVYTTWLEAKDCGKNL 510
A L +K + N +++DS A+ L ++D PLV + ++ + +
Sbjct: 1092 QAKLTAIKMALEDSGPNVNIVTDSQYAMGILTAQPTQSDSPLVEQIIALMIQKQ----QI 1147
Query: 511 NFVWCPSHCGITGNELVD 528
W P+H GI GNE +D
Sbjct: 1148 YLQWVPAHKGIGGNEEID 1165
>sp|Q9MIY2|NU4LM_DANRE NADH-ubiquinone oxidoreductase chain 4L OS=Danio rerio GN=mt-nd4l
PE=3 SV=1
Length = 98
Score = 34.3 bits (77), Expect = 2.8, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 452 LMAILLCVKNL---IFLPSTNFTLISDSMSA------LLAISNCKNDHPLVSLVYTTWLE 502
L++ LLC++ + +F+ +TL ++SMS LLA S C+ L LV T
Sbjct: 26 LLSALLCLEGMMLSLFISMALWTLKTESMSLSTAPMLLLAFSACEASAGLALLVATARTH 85
Query: 503 AKDCGKNLNFVWC 515
D KNLN + C
Sbjct: 86 GSDHMKNLNLLQC 98
>sp|Q1MWK4|NU4LM_DISPE NADH-ubiquinone oxidoreductase chain 4L OS=Distoechurus pennatus
GN=MT-ND4L PE=3 SV=1
Length = 98
Score = 33.9 bits (76), Expect = 4.2, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 434 NQVHAFKLNKVNS-VLSSELMAILLCVKNLIF-------LPSTNFTLISDSMSAL--LAI 483
N + AF L + + V S LM+ LLC++ ++ L ++F + S SM+ L L
Sbjct: 7 NLIMAFSLALIGALVYRSHLMSTLLCLEGMMLSLFIQMALLISHFHMFSMSMAPLILLVF 66
Query: 484 SNCKNDHPLVSLVYTTWLEAKDCGKNLNFVWC 515
S C+ L LV T+ D +NLN + C
Sbjct: 67 SACEAGLGLALLVKTSSNYGNDYVQNLNLLQC 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,121,937
Number of Sequences: 539616
Number of extensions: 9098025
Number of successful extensions: 18231
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 18219
Number of HSP's gapped (non-prelim): 20
length of query: 586
length of database: 191,569,459
effective HSP length: 123
effective length of query: 463
effective length of database: 125,196,691
effective search space: 57966067933
effective search space used: 57966067933
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)