Query psy1604
Match_columns 693
No_of_seqs 445 out of 3269
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 19:19:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0335|consensus 100.0 7.5E-75 1.6E-79 599.4 38.4 460 120-656 3-474 (482)
2 KOG0331|consensus 100.0 2.1E-71 4.6E-76 584.2 40.8 383 199-657 92-479 (519)
3 PTZ00110 helicase; Provisional 100.0 5.2E-66 1.1E-70 574.1 47.4 394 188-658 120-516 (545)
4 KOG0330|consensus 100.0 6.2E-67 1.4E-71 514.9 30.4 366 194-642 57-423 (476)
5 KOG0333|consensus 100.0 8.9E-66 1.9E-70 523.3 35.7 402 182-654 229-653 (673)
6 KOG0341|consensus 100.0 6.5E-67 1.4E-71 512.6 19.7 400 182-656 154-559 (610)
7 KOG0336|consensus 100.0 7.4E-65 1.6E-69 501.3 30.1 386 192-655 213-601 (629)
8 KOG0339|consensus 100.0 3.4E-63 7.4E-68 501.5 36.3 395 181-653 206-602 (731)
9 COG0513 SrmB Superfamily II DN 100.0 8.2E-63 1.8E-67 543.1 41.0 371 198-648 29-406 (513)
10 KOG0328|consensus 100.0 2.4E-63 5.2E-68 469.2 28.2 380 189-651 18-398 (400)
11 PLN00206 DEAD-box ATP-dependen 100.0 1.4E-61 3.1E-66 537.3 43.5 393 185-654 108-503 (518)
12 KOG0338|consensus 100.0 3.7E-62 8.1E-67 494.8 27.2 361 197-637 180-544 (691)
13 PRK10590 ATP-dependent RNA hel 100.0 4.1E-59 8.9E-64 511.7 44.9 366 199-641 2-367 (456)
14 PRK04837 ATP-dependent RNA hel 100.0 5E-59 1.1E-63 507.9 41.3 371 197-641 7-377 (423)
15 KOG0342|consensus 100.0 1.7E-59 3.7E-64 476.0 30.6 356 194-626 78-438 (543)
16 PRK04537 ATP-dependent RNA hel 100.0 7.5E-58 1.6E-62 510.2 45.9 370 198-641 9-379 (572)
17 KOG0340|consensus 100.0 1.5E-58 3.2E-63 450.5 29.6 363 197-641 6-376 (442)
18 KOG0334|consensus 100.0 1.6E-58 3.4E-63 509.2 31.9 410 186-673 353-775 (997)
19 KOG0345|consensus 100.0 8.7E-58 1.9E-62 460.2 34.3 368 199-648 5-382 (567)
20 KOG0343|consensus 100.0 2.1E-58 4.5E-63 471.6 29.9 364 196-636 67-433 (758)
21 PRK11634 ATP-dependent RNA hel 100.0 4E-57 8.6E-62 506.8 40.8 346 198-625 6-352 (629)
22 PRK11776 ATP-dependent RNA hel 100.0 8.3E-57 1.8E-61 495.8 40.5 359 198-640 4-363 (460)
23 KOG0326|consensus 100.0 1.4E-58 2.9E-63 443.9 19.1 369 198-650 85-453 (459)
24 PRK11192 ATP-dependent RNA hel 100.0 1E-55 2.2E-60 484.2 42.0 363 199-640 2-366 (434)
25 PRK01297 ATP-dependent RNA hel 100.0 7.5E-55 1.6E-59 481.3 48.3 374 195-642 84-458 (475)
26 KOG0348|consensus 100.0 7.3E-57 1.6E-61 458.9 29.4 396 191-634 129-562 (708)
27 KOG0347|consensus 100.0 4.5E-57 9.7E-62 461.8 21.1 400 192-640 175-584 (731)
28 KOG0332|consensus 100.0 5.3E-54 1.1E-58 421.0 27.6 379 189-652 81-471 (477)
29 PTZ00424 helicase 45; Provisio 100.0 1.5E-52 3.2E-57 455.8 40.0 368 196-646 26-394 (401)
30 KOG0346|consensus 100.0 2.8E-53 6E-58 423.7 27.9 366 198-640 19-424 (569)
31 KOG0327|consensus 100.0 7.2E-52 1.6E-56 410.4 24.9 370 197-651 25-395 (397)
32 KOG0344|consensus 100.0 3.6E-51 7.8E-56 425.3 27.1 395 183-654 117-523 (593)
33 KOG0350|consensus 100.0 4.1E-49 8.9E-54 399.8 27.5 368 209-637 148-552 (620)
34 KOG0337|consensus 100.0 1E-49 2.3E-54 396.4 22.5 362 197-640 20-382 (529)
35 TIGR03817 DECH_helic helicase/ 100.0 2.2E-48 4.9E-53 444.6 35.7 365 204-638 20-400 (742)
36 KOG4284|consensus 100.0 2.3E-48 5E-53 403.6 23.9 352 193-627 20-381 (980)
37 TIGR00614 recQ_fam ATP-depende 100.0 2.5E-45 5.5E-50 403.8 31.9 320 215-626 6-334 (470)
38 PLN03137 ATP-dependent DNA hel 100.0 4.3E-45 9.4E-50 413.3 34.0 329 204-625 443-787 (1195)
39 PRK11057 ATP-dependent DNA hel 100.0 4.2E-44 9E-49 404.1 33.8 327 207-626 11-344 (607)
40 PRK13767 ATP-dependent helicas 100.0 2.3E-43 5E-48 411.4 36.2 358 205-623 18-396 (876)
41 PRK02362 ski2-like helicase; P 100.0 1.4E-43 3.1E-48 409.8 31.9 348 199-625 2-397 (737)
42 TIGR01389 recQ ATP-dependent D 100.0 1.4E-42 3E-47 393.1 33.3 317 216-625 9-331 (591)
43 KOG0329|consensus 100.0 4.4E-44 9.5E-49 333.9 13.4 336 198-649 42-379 (387)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.7E-41 5.9E-46 378.0 35.8 317 216-624 12-390 (844)
45 COG1201 Lhr Lhr-like helicases 100.0 1E-41 2.3E-46 379.2 31.3 349 205-624 8-361 (814)
46 PRK00254 ski2-like helicase; P 100.0 2.4E-41 5.2E-46 390.3 32.0 343 199-625 2-388 (720)
47 TIGR00580 mfd transcription-re 100.0 3.7E-39 8E-44 371.7 38.3 320 206-625 437-770 (926)
48 PRK01172 ski2-like helicase; P 100.0 6.6E-40 1.4E-44 376.9 30.0 340 199-626 2-379 (674)
49 COG1111 MPH1 ERCC4-like helica 100.0 2.5E-39 5.4E-44 332.1 29.2 386 217-625 12-481 (542)
50 TIGR00643 recG ATP-dependent D 100.0 7.9E-39 1.7E-43 362.8 36.2 319 207-623 223-564 (630)
51 PRK10917 ATP-dependent DNA hel 100.0 2.3E-38 4.9E-43 361.2 38.5 312 211-623 253-587 (681)
52 PRK10689 transcription-repair 100.0 2.3E-38 5E-43 372.7 39.2 316 209-624 590-918 (1147)
53 PRK09751 putative ATP-dependen 100.0 1.7E-38 3.7E-43 374.9 31.8 333 240-622 1-382 (1490)
54 COG0514 RecQ Superfamily II DN 100.0 6.5E-38 1.4E-42 337.1 28.5 319 216-626 13-338 (590)
55 PHA02653 RNA helicase NPH-II; 100.0 2.3E-37 5E-42 345.3 30.5 319 223-626 167-515 (675)
56 PRK09401 reverse gyrase; Revie 100.0 1.8E-36 3.9E-41 357.5 33.6 309 209-612 69-431 (1176)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.1E-36 2.5E-41 347.7 29.4 303 223-625 5-336 (819)
58 KOG0354|consensus 100.0 2.8E-36 6.1E-41 327.6 26.9 402 205-624 47-528 (746)
59 PHA02558 uvsW UvsW helicase; P 100.0 9.7E-36 2.1E-40 329.4 31.7 331 218-623 112-450 (501)
60 PRK11664 ATP-dependent RNA hel 100.0 8.2E-36 1.8E-40 341.6 28.5 302 224-625 9-339 (812)
61 PRK14701 reverse gyrase; Provi 100.0 1.3E-35 2.8E-40 357.0 31.3 323 207-622 66-453 (1638)
62 KOG0349|consensus 100.0 2.8E-36 6E-41 300.6 20.2 317 274-624 286-614 (725)
63 COG1202 Superfamily II helicas 100.0 9.2E-36 2E-40 307.0 22.0 340 199-626 195-554 (830)
64 PRK12898 secA preprotein trans 100.0 7.4E-35 1.6E-39 319.8 30.4 388 220-626 103-587 (656)
65 TIGR01587 cas3_core CRISPR-ass 100.0 2.7E-35 5.9E-40 315.1 23.0 299 237-624 1-335 (358)
66 PRK13766 Hef nuclease; Provisi 100.0 1.1E-33 2.4E-38 331.5 36.8 378 217-625 12-479 (773)
67 PRK09200 preprotein translocas 100.0 3.4E-34 7.4E-39 321.2 30.4 392 217-626 76-542 (790)
68 COG1204 Superfamily II helicas 100.0 2.5E-34 5.5E-39 325.1 27.6 343 204-623 15-406 (766)
69 TIGR01054 rgy reverse gyrase. 100.0 6.7E-34 1.5E-38 336.3 32.3 295 207-597 65-409 (1171)
70 TIGR03714 secA2 accessory Sec 100.0 1.7E-33 3.7E-38 312.5 30.1 390 220-626 70-538 (762)
71 COG1205 Distinct helicase fami 100.0 2E-33 4.3E-38 322.4 28.3 345 206-623 56-420 (851)
72 TIGR00963 secA preprotein tran 100.0 8.7E-33 1.9E-37 304.8 31.2 382 220-626 56-518 (745)
73 TIGR00603 rad25 DNA repair hel 100.0 2E-32 4.3E-37 304.1 29.4 344 219-641 254-624 (732)
74 PRK04914 ATP-dependent helicas 100.0 9.2E-33 2E-37 317.2 27.3 401 220-641 152-618 (956)
75 TIGR03158 cas3_cyano CRISPR-as 100.0 2.9E-31 6.2E-36 281.1 29.7 308 224-610 1-357 (357)
76 PRK11131 ATP-dependent RNA hel 100.0 7.8E-32 1.7E-36 313.2 25.4 305 222-625 76-411 (1294)
77 KOG0351|consensus 100.0 5.1E-31 1.1E-35 299.9 24.0 326 209-625 253-592 (941)
78 KOG0352|consensus 100.0 1.2E-30 2.6E-35 260.5 19.2 328 208-626 6-363 (641)
79 KOG0952|consensus 100.0 6.9E-30 1.5E-34 280.2 25.2 345 215-625 105-491 (1230)
80 PRK05580 primosome assembly pr 100.0 1.3E-28 2.8E-33 280.0 35.3 316 220-623 144-547 (679)
81 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.7E-29 3.6E-34 295.1 23.9 315 217-625 61-404 (1283)
82 COG1200 RecG RecG-like helicas 100.0 2.9E-28 6.3E-33 261.5 31.3 314 214-627 257-593 (677)
83 COG1061 SSL2 DNA or RNA helica 100.0 5.2E-29 1.1E-33 270.3 25.8 329 218-611 34-375 (442)
84 PRK13104 secA preprotein trans 100.0 8.7E-28 1.9E-32 268.7 31.0 390 220-627 82-589 (896)
85 KOG0353|consensus 100.0 6.8E-29 1.5E-33 244.2 19.3 333 204-625 77-467 (695)
86 PLN03142 Probable chromatin-re 100.0 5.7E-28 1.2E-32 278.6 25.0 372 220-622 169-594 (1033)
87 PRK12899 secA preprotein trans 100.0 1.3E-26 2.8E-31 258.6 31.2 149 201-362 65-229 (970)
88 PRK09694 helicase Cas3; Provis 100.0 1.1E-26 2.5E-31 265.6 31.5 333 218-614 284-664 (878)
89 cd00268 DEADc DEAD-box helicas 100.0 2.9E-27 6.2E-32 232.2 22.5 195 200-404 1-195 (203)
90 PRK12904 preprotein translocas 100.0 8.6E-27 1.9E-31 260.8 29.0 390 220-627 81-575 (830)
91 TIGR00595 priA primosomal prot 100.0 1.3E-26 2.8E-31 254.5 29.0 290 239-622 1-378 (505)
92 PRK11448 hsdR type I restricti 99.9 3.7E-26 8E-31 268.8 28.2 354 219-614 412-802 (1123)
93 KOG0951|consensus 99.9 3.7E-26 8.1E-31 253.7 25.0 343 205-622 296-699 (1674)
94 KOG0947|consensus 99.9 5.5E-26 1.2E-30 246.8 25.0 359 216-623 294-721 (1248)
95 PRK12906 secA preprotein trans 99.9 8.4E-26 1.8E-30 251.9 26.8 391 219-627 79-555 (796)
96 KOG0948|consensus 99.9 3E-26 6.5E-31 243.1 18.4 359 220-633 129-547 (1041)
97 PRK13107 preprotein translocas 99.9 3.3E-25 7.2E-30 247.2 26.2 390 220-627 82-593 (908)
98 COG1197 Mfd Transcription-repa 99.9 1.7E-24 3.7E-29 245.0 30.2 307 220-625 594-913 (1139)
99 COG4581 Superfamily II RNA hel 99.9 1.8E-24 3.8E-29 244.9 25.6 360 214-625 114-537 (1041)
100 COG4098 comFA Superfamily II D 99.9 4.5E-23 9.8E-28 201.8 29.9 299 220-623 97-414 (441)
101 PF00270 DEAD: DEAD/DEAH box h 99.9 2.7E-24 5.8E-29 204.6 18.9 167 222-399 1-168 (169)
102 KOG0385|consensus 99.9 1.9E-23 4E-28 223.1 25.3 372 220-622 167-594 (971)
103 KOG0950|consensus 99.9 1.2E-24 2.5E-29 238.6 14.8 370 208-649 211-631 (1008)
104 KOG0920|consensus 99.9 2.2E-24 4.8E-29 241.6 16.4 345 220-625 173-544 (924)
105 KOG0922|consensus 99.9 2.8E-23 6.2E-28 220.9 22.6 306 221-625 52-390 (674)
106 COG1643 HrpA HrpA-like helicas 99.9 2E-23 4.3E-28 235.3 21.9 306 222-624 52-386 (845)
107 KOG0387|consensus 99.9 8.2E-23 1.8E-27 219.3 19.2 382 220-621 205-652 (923)
108 KOG0384|consensus 99.9 5E-23 1.1E-27 229.9 14.6 380 219-625 369-811 (1373)
109 PRK12900 secA preprotein trans 99.9 1.8E-21 3.9E-26 218.2 25.1 126 499-626 577-712 (1025)
110 KOG0923|consensus 99.9 7.1E-22 1.5E-26 207.7 17.8 309 217-623 262-604 (902)
111 COG1203 CRISPR-associated heli 99.9 7.5E-21 1.6E-25 218.7 23.2 324 220-624 195-549 (733)
112 KOG0390|consensus 99.9 1.7E-20 3.6E-25 207.3 24.2 377 220-623 238-703 (776)
113 COG1110 Reverse gyrase [DNA re 99.9 8.4E-20 1.8E-24 201.6 29.4 293 208-596 70-416 (1187)
114 COG4096 HsdR Type I site-speci 99.9 8.9E-21 1.9E-25 206.5 20.8 337 219-612 164-525 (875)
115 TIGR01407 dinG_rel DnaQ family 99.9 1.5E-19 3.3E-24 212.3 30.9 121 516-639 672-829 (850)
116 TIGR00631 uvrb excinuclease AB 99.9 6E-19 1.3E-23 198.5 32.7 133 502-636 424-563 (655)
117 KOG0389|consensus 99.8 2.5E-20 5.5E-25 200.1 18.6 405 220-651 399-910 (941)
118 KOG0392|consensus 99.8 2.2E-20 4.8E-25 208.0 17.5 388 220-625 975-1454(1549)
119 KOG0924|consensus 99.8 3E-20 6.4E-25 195.8 15.9 305 221-624 357-696 (1042)
120 TIGR00348 hsdR type I site-spe 99.8 3.7E-19 8.1E-24 202.6 25.7 342 221-612 239-634 (667)
121 PRK12326 preprotein translocas 99.8 9.3E-19 2E-23 191.4 24.9 389 220-627 78-549 (764)
122 KOG0926|consensus 99.8 1.4E-19 3.1E-24 193.8 17.8 312 227-624 263-703 (1172)
123 PRK05298 excinuclease ABC subu 99.8 4.1E-18 9E-23 193.4 30.6 146 503-649 429-589 (652)
124 KOG0949|consensus 99.8 1.9E-19 4E-24 196.7 18.3 158 220-394 511-672 (1330)
125 PRK13103 secA preprotein trans 99.8 1.4E-18 3.1E-23 194.6 25.4 390 219-627 81-593 (913)
126 COG0556 UvrB Helicase subunit 99.8 4.5E-18 9.8E-23 176.1 25.2 147 502-650 428-590 (663)
127 COG1198 PriA Primosomal protei 99.8 6E-18 1.3E-22 188.5 24.9 313 219-623 197-601 (730)
128 KOG1000|consensus 99.8 2.4E-18 5.2E-23 175.9 19.8 374 219-623 197-599 (689)
129 KOG0925|consensus 99.8 1.1E-18 2.3E-23 178.1 15.5 329 196-625 23-387 (699)
130 smart00487 DEXDc DEAD-like hel 99.8 7.3E-18 1.6E-22 164.1 19.1 177 215-404 3-181 (201)
131 PRK07246 bifunctional ATP-depe 99.8 7E-17 1.5E-21 187.2 29.8 121 516-639 645-798 (820)
132 KOG1123|consensus 99.8 2.1E-18 4.5E-23 176.4 10.6 320 218-613 300-635 (776)
133 cd00079 HELICc Helicase superf 99.7 2.5E-17 5.5E-22 149.2 14.7 118 504-621 12-131 (131)
134 PRK12903 secA preprotein trans 99.7 7.1E-16 1.5E-20 171.2 26.9 391 217-627 76-541 (925)
135 PF00271 Helicase_C: Helicase 99.7 4.1E-17 8.8E-22 133.4 8.3 78 536-613 1-78 (78)
136 TIGR03117 cas_csf4 CRISPR-asso 99.7 5.3E-15 1.1E-19 164.0 27.7 126 509-637 462-628 (636)
137 CHL00122 secA preprotein trans 99.7 6E-15 1.3E-19 165.1 27.6 129 217-361 74-209 (870)
138 COG4889 Predicted helicase [Ge 99.7 1.7E-16 3.7E-21 171.6 13.1 384 208-645 149-620 (1518)
139 KOG4150|consensus 99.7 3.3E-16 7.2E-21 162.3 14.4 344 208-623 274-638 (1034)
140 KOG0391|consensus 99.7 2E-15 4.3E-20 167.3 21.3 130 505-635 1261-1394(1958)
141 KOG0388|consensus 99.7 1.2E-15 2.7E-20 161.7 18.4 120 504-623 1028-1150(1185)
142 PRK08074 bifunctional ATP-depe 99.7 2.1E-14 4.5E-19 169.8 28.0 124 516-639 750-908 (928)
143 PRK12902 secA preprotein trans 99.6 5.9E-14 1.3E-18 156.8 28.2 348 220-585 85-506 (939)
144 KOG0953|consensus 99.6 4.4E-15 9.6E-20 154.5 17.6 270 235-623 191-475 (700)
145 KOG0386|consensus 99.6 3.6E-16 7.8E-21 172.4 10.1 382 220-624 394-835 (1157)
146 KOG1002|consensus 99.6 1.6E-14 3.4E-19 148.0 20.8 140 503-645 619-766 (791)
147 KOG4439|consensus 99.6 8.2E-15 1.8E-19 156.1 19.3 119 503-621 728-852 (901)
148 cd00046 DEXDc DEAD-like helica 99.6 8.7E-15 1.9E-19 133.9 16.7 144 236-393 1-144 (144)
149 PF04851 ResIII: Type III rest 99.6 5.6E-15 1.2E-19 142.2 13.1 152 220-394 3-183 (184)
150 COG0553 HepA Superfamily II DN 99.6 1E-14 2.3E-19 174.9 17.3 405 219-640 337-834 (866)
151 PRK12901 secA preprotein trans 99.6 3.5E-13 7.7E-18 152.1 23.4 127 499-627 607-743 (1112)
152 smart00490 HELICc helicase sup 99.5 1.7E-14 3.6E-19 119.0 8.6 81 533-613 2-82 (82)
153 TIGR02562 cas3_yersinia CRISPR 99.5 4E-13 8.7E-18 152.4 22.4 349 220-614 408-881 (1110)
154 COG1199 DinG Rad3-related DNA 99.5 4.7E-12 1E-16 146.4 24.6 106 516-624 477-616 (654)
155 PRK11747 dinG ATP-dependent DN 99.5 1.3E-11 2.7E-16 141.8 27.1 117 517-637 533-687 (697)
156 TIGR00604 rad3 DNA repair heli 99.5 1.1E-11 2.3E-16 143.5 26.4 128 516-654 520-693 (705)
157 KOG1015|consensus 99.4 2.6E-12 5.7E-17 140.6 18.2 120 503-622 1125-1272(1567)
158 PF06862 DUF1253: Protein of u 99.4 7.6E-11 1.6E-15 124.8 25.1 297 272-632 35-421 (442)
159 KOG0951|consensus 99.4 2.1E-11 4.5E-16 137.7 20.3 310 220-626 1143-1495(1674)
160 KOG0921|consensus 99.4 5.3E-12 1.1E-16 137.9 13.7 353 225-623 383-772 (1282)
161 PRK14873 primosome assembly pr 99.3 4.5E-11 9.7E-16 134.8 17.6 136 242-399 167-309 (665)
162 PF00176 SNF2_N: SNF2 family N 99.3 3.1E-11 6.6E-16 125.9 13.8 157 224-394 1-173 (299)
163 PF02399 Herpes_ori_bp: Origin 99.2 7.6E-10 1.6E-14 123.2 20.5 321 236-624 50-387 (824)
164 PF07652 Flavi_DEAD: Flaviviru 99.1 2.2E-10 4.8E-15 101.5 10.0 136 234-397 3-140 (148)
165 KOG2340|consensus 99.1 6.1E-10 1.3E-14 116.0 14.6 360 217-634 213-676 (698)
166 smart00489 DEXDc3 DEAD-like he 99.1 1.4E-09 3.1E-14 111.7 14.3 73 220-297 8-84 (289)
167 smart00488 DEXDc2 DEAD-like he 99.1 1.4E-09 3.1E-14 111.7 14.3 73 220-297 8-84 (289)
168 COG0653 SecA Preprotein transl 99.1 6.5E-09 1.4E-13 116.7 18.7 406 220-652 80-564 (822)
169 COG0610 Type I site-specific r 98.9 1.7E-07 3.6E-12 110.9 25.3 137 236-393 274-413 (962)
170 KOG1016|consensus 98.8 2E-07 4.2E-12 101.2 17.2 107 517-623 718-845 (1387)
171 PF07517 SecA_DEAD: SecA DEAD- 98.8 1.4E-07 3E-12 94.4 14.6 129 218-361 75-210 (266)
172 TIGR00596 rad1 DNA repair prot 98.5 1E-06 2.3E-11 101.4 15.0 72 320-395 3-74 (814)
173 KOG1001|consensus 98.5 1.8E-07 4E-12 105.2 8.2 118 503-620 521-643 (674)
174 KOG1133|consensus 98.5 0.00014 3E-09 79.4 27.7 139 503-655 611-799 (821)
175 PRK15483 type III restriction- 98.4 2.3E-06 5E-11 98.7 14.1 74 568-641 501-583 (986)
176 KOG0952|consensus 98.3 1.5E-06 3.2E-11 98.2 8.6 131 220-362 927-1060(1230)
177 PF13086 AAA_11: AAA domain; P 98.3 6.1E-06 1.3E-10 82.4 11.9 74 220-296 1-75 (236)
178 PF13307 Helicase_C_2: Helicas 98.2 3.5E-06 7.6E-11 79.4 8.5 107 516-624 7-149 (167)
179 PF13872 AAA_34: P-loop contai 98.1 5.2E-05 1.1E-09 76.3 12.7 171 204-400 27-227 (303)
180 KOG1802|consensus 98.0 1.7E-05 3.6E-10 85.6 9.4 77 212-298 402-478 (935)
181 PF02562 PhoH: PhoH-like prote 98.0 4E-05 8.6E-10 73.8 10.7 60 218-286 2-61 (205)
182 PF13604 AAA_30: AAA domain; P 98.0 9.9E-06 2.1E-10 78.5 6.3 63 220-293 1-65 (196)
183 COG3587 Restriction endonuclea 98.0 0.00027 5.7E-09 79.1 17.5 74 567-640 482-567 (985)
184 KOG1132|consensus 97.9 5.8E-05 1.3E-09 84.5 10.9 142 220-362 21-261 (945)
185 PF12340 DUF3638: Protein of u 97.9 0.0002 4.2E-09 69.6 13.2 150 199-361 4-185 (229)
186 PF09848 DUF2075: Uncharacteri 97.9 6E-05 1.3E-09 80.3 9.8 108 237-375 3-117 (352)
187 KOG1803|consensus 97.8 0.00014 3E-09 78.5 10.2 64 220-294 185-249 (649)
188 TIGR00376 DNA helicase, putati 97.7 0.00034 7.3E-09 79.9 12.5 67 219-296 156-223 (637)
189 PF13245 AAA_19: Part of AAA d 97.6 0.00021 4.5E-09 57.4 7.0 53 235-294 10-62 (76)
190 PRK10536 hypothetical protein; 97.6 0.0011 2.5E-08 65.7 13.4 61 216-285 55-115 (262)
191 KOG0383|consensus 97.6 3.7E-06 8.1E-11 93.6 -4.8 77 504-581 615-696 (696)
192 TIGR01447 recD exodeoxyribonuc 97.6 0.00065 1.4E-08 76.6 12.8 69 223-297 148-216 (586)
193 PF00641 zf-RanBP: Zn-finger i 97.5 3.8E-05 8.1E-10 49.4 1.0 29 104-132 1-30 (30)
194 PRK10875 recD exonuclease V su 97.5 0.0008 1.7E-08 76.0 12.3 70 221-297 153-222 (615)
195 TIGR01448 recD_rel helicase, p 97.3 0.0024 5.2E-08 74.2 12.8 65 219-292 322-386 (720)
196 PF00580 UvrD-helicase: UvrD/R 97.2 0.0018 3.8E-08 67.8 10.5 123 221-358 1-125 (315)
197 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0037 7.9E-08 73.0 13.3 62 219-291 351-413 (744)
198 smart00492 HELICc3 helicase su 97.2 0.0027 5.8E-08 57.7 9.5 75 549-623 28-136 (141)
199 smart00491 HELICc2 helicase su 97.1 0.0022 4.8E-08 58.4 8.7 69 555-623 31-137 (142)
200 KOG4198|consensus 97.1 0.00036 7.9E-09 69.1 3.5 32 103-134 136-168 (280)
201 PRK13889 conjugal transfer rel 97.0 0.0037 8.1E-08 74.0 11.1 60 220-290 346-406 (988)
202 smart00547 ZnF_RBZ Zinc finger 97.0 0.00037 8E-09 43.1 1.5 24 106-129 1-25 (26)
203 COG1875 NYN ribonuclease and A 96.9 0.011 2.3E-07 60.7 11.4 67 215-289 223-291 (436)
204 KOG1805|consensus 96.8 0.0061 1.3E-07 69.5 10.4 135 204-362 657-810 (1100)
205 KOG1995|consensus 96.8 0.0018 3.8E-08 65.6 5.3 30 104-133 215-246 (351)
206 PRK08181 transposase; Validate 96.7 0.01 2.3E-07 60.1 10.3 123 221-399 88-215 (269)
207 PF05970 PIF1: PIF1-like helic 96.7 0.0056 1.2E-07 65.5 8.8 60 220-290 1-66 (364)
208 KOG1131|consensus 96.7 0.023 5E-07 60.5 12.4 80 517-597 529-623 (755)
209 PF14617 CMS1: U3-containing 9 96.6 0.0043 9.4E-08 61.6 6.7 86 272-358 124-211 (252)
210 PF13871 Helicase_C_4: Helicas 96.6 0.0064 1.4E-07 61.2 7.9 80 559-638 52-142 (278)
211 PRK13826 Dtr system oriT relax 96.6 0.022 4.7E-07 68.1 13.5 75 205-291 367-442 (1102)
212 PF13401 AAA_22: AAA domain; P 96.5 0.0046 1E-07 55.4 5.8 19 234-252 3-21 (131)
213 COG3421 Uncharacterized protei 96.5 0.0041 8.9E-08 67.2 5.9 141 240-395 2-167 (812)
214 KOG0298|consensus 96.5 0.0081 1.8E-07 70.3 8.6 156 235-399 374-556 (1394)
215 PRK04296 thymidine kinase; Pro 96.4 0.0076 1.6E-07 58.1 6.4 36 236-282 3-38 (190)
216 KOG0701|consensus 96.3 0.0053 1.2E-07 74.7 6.0 94 520-613 294-399 (1606)
217 PRK06526 transposase; Provisio 96.3 0.012 2.7E-07 59.2 7.8 33 229-262 92-124 (254)
218 cd00009 AAA The AAA+ (ATPases 96.3 0.043 9.4E-07 49.6 11.0 25 235-260 19-43 (151)
219 PRK07952 DNA replication prote 96.2 0.029 6.4E-07 56.0 9.6 110 236-398 100-210 (244)
220 PRK06921 hypothetical protein; 96.2 0.024 5.2E-07 57.6 9.2 28 234-262 116-143 (266)
221 PRK12723 flagellar biosynthesi 95.9 0.064 1.4E-06 57.3 11.4 122 236-394 175-298 (388)
222 PRK08116 hypothetical protein; 95.9 0.052 1.1E-06 55.3 10.2 27 236-263 115-141 (268)
223 PRK12377 putative replication 95.9 0.049 1.1E-06 54.6 9.6 46 235-292 101-146 (248)
224 COG1484 DnaC DNA replication p 95.8 0.016 3.4E-07 58.5 5.9 49 234-294 104-152 (254)
225 TIGR01075 uvrD DNA helicase II 95.8 0.031 6.6E-07 65.6 8.9 109 219-359 3-114 (715)
226 PRK06835 DNA replication prote 95.7 0.066 1.4E-06 56.1 10.3 46 234-291 182-227 (329)
227 smart00382 AAA ATPases associa 95.7 0.015 3.2E-07 52.3 4.7 41 235-286 2-42 (148)
228 PRK08727 hypothetical protein; 95.7 0.04 8.7E-07 55.0 8.1 26 236-262 42-67 (233)
229 cd01121 Sms Sms (bacterial rad 95.6 0.14 3.1E-06 54.5 12.5 53 234-298 81-133 (372)
230 PRK14087 dnaA chromosomal repl 95.6 0.055 1.2E-06 59.4 9.6 113 236-399 142-255 (450)
231 PF03354 Terminase_1: Phage Te 95.6 0.04 8.6E-07 61.3 8.6 148 223-390 1-160 (477)
232 PF00308 Bac_DnaA: Bacterial d 95.5 0.026 5.7E-07 55.6 6.1 110 237-399 36-146 (219)
233 PHA02533 17 large terminase pr 95.5 0.076 1.6E-06 59.4 10.2 70 220-298 59-128 (534)
234 PRK14974 cell division protein 95.4 0.068 1.5E-06 56.0 9.1 51 347-401 221-272 (336)
235 PRK11054 helD DNA helicase IV; 95.4 0.063 1.4E-06 62.0 9.6 76 214-298 190-265 (684)
236 TIGR02785 addA_Gpos recombinat 95.4 0.062 1.3E-06 66.6 10.1 124 220-359 1-126 (1232)
237 PRK00149 dnaA chromosomal repl 95.4 0.073 1.6E-06 58.8 9.7 111 236-399 149-260 (450)
238 TIGR02760 TraI_TIGR conjugativ 95.3 0.1 2.2E-06 67.2 11.6 63 220-293 429-493 (1960)
239 KOG0335|consensus 95.3 0.045 9.7E-07 58.8 7.2 121 404-541 205-326 (482)
240 PRK06893 DNA replication initi 95.2 0.06 1.3E-06 53.5 7.7 46 346-394 89-135 (229)
241 PRK14712 conjugal transfer nic 95.1 0.081 1.8E-06 65.5 9.5 64 220-290 835-900 (1623)
242 TIGR00362 DnaA chromosomal rep 95.0 0.1 2.2E-06 56.8 9.5 27 236-263 137-163 (405)
243 PRK11773 uvrD DNA-dependent he 95.0 0.1 2.2E-06 61.2 9.9 71 219-298 8-78 (721)
244 PRK10919 ATP-dependent DNA hel 95.0 0.065 1.4E-06 62.2 8.1 70 220-298 2-71 (672)
245 PRK12422 chromosomal replicati 94.9 0.12 2.5E-06 56.7 9.5 110 236-400 142-252 (445)
246 PRK13894 conjugal transfer ATP 94.9 0.16 3.5E-06 53.0 10.1 58 221-287 133-191 (319)
247 COG2805 PilT Tfp pilus assembl 94.9 0.048 1E-06 54.7 5.6 54 192-264 100-153 (353)
248 PRK08084 DNA replication initi 94.8 0.096 2.1E-06 52.3 8.0 26 235-261 45-70 (235)
249 PRK11331 5-methylcytosine-spec 94.8 0.088 1.9E-06 56.8 7.8 32 221-252 180-211 (459)
250 PF00448 SRP54: SRP54-type pro 94.7 0.045 9.8E-07 52.9 5.1 48 347-398 82-130 (196)
251 PRK05707 DNA polymerase III su 94.7 0.24 5.2E-06 52.0 10.8 42 220-262 3-48 (328)
252 PRK13709 conjugal transfer nic 94.7 0.14 3E-06 64.5 10.4 65 219-290 966-1032(1747)
253 TIGR01074 rep ATP-dependent DN 94.7 0.18 3.9E-06 58.8 10.8 70 220-298 1-70 (664)
254 PRK05642 DNA replication initi 94.6 0.11 2.5E-06 51.7 7.9 25 236-261 46-70 (234)
255 cd01120 RecA-like_NTPases RecA 94.6 0.2 4.4E-06 46.3 9.1 17 347-363 84-100 (165)
256 COG4962 CpaF Flp pilus assembl 94.6 0.053 1.2E-06 55.7 5.3 63 215-289 152-215 (355)
257 PF05876 Terminase_GpA: Phage 94.6 0.03 6.5E-07 63.1 3.9 124 220-361 16-147 (557)
258 PRK14086 dnaA chromosomal repl 94.5 0.14 3E-06 57.5 8.8 111 237-400 316-427 (617)
259 PRK08769 DNA polymerase III su 94.5 0.23 5E-06 51.7 9.9 44 218-262 2-52 (319)
260 KOG0989|consensus 94.5 0.099 2.2E-06 52.6 6.7 44 344-392 125-168 (346)
261 PF05127 Helicase_RecD: Helica 94.5 0.021 4.5E-07 53.7 1.9 124 239-394 1-124 (177)
262 COG1066 Sms Predicted ATP-depe 94.4 0.55 1.2E-05 49.5 12.1 91 234-362 92-182 (456)
263 PRK14088 dnaA chromosomal repl 94.3 0.3 6.4E-06 53.6 10.8 38 236-282 131-168 (440)
264 COG1444 Predicted P-loop ATPas 94.2 0.4 8.8E-06 54.8 11.7 157 205-394 199-357 (758)
265 cd01124 KaiC KaiC is a circadi 94.2 0.46 9.9E-06 45.3 10.9 49 238-298 2-50 (187)
266 COG2256 MGS1 ATPase related to 94.2 0.13 2.8E-06 53.8 7.1 18 236-253 49-66 (436)
267 TIGR03420 DnaA_homol_Hda DnaA 94.1 0.23 4.9E-06 49.2 8.8 19 234-252 37-55 (226)
268 PRK00411 cdc6 cell division co 94.1 0.34 7.5E-06 52.5 10.8 26 236-262 56-81 (394)
269 PRK13833 conjugal transfer pro 94.1 0.16 3.5E-06 52.9 7.7 58 221-287 129-187 (323)
270 KOG4198|consensus 94.0 0.026 5.6E-07 56.3 1.7 35 101-135 58-93 (280)
271 PRK05580 primosome assembly pr 94.0 0.31 6.8E-06 56.6 10.7 75 517-592 189-264 (679)
272 PTZ00112 origin recognition co 93.9 0.44 9.5E-06 55.2 11.2 23 238-261 784-806 (1164)
273 PRK14722 flhF flagellar biosyn 93.9 0.18 4E-06 53.4 7.9 21 234-254 136-156 (374)
274 PF05621 TniB: Bacterial TniB 93.9 0.33 7.3E-06 49.4 9.3 56 236-296 62-118 (302)
275 TIGR01073 pcrA ATP-dependent D 93.9 0.28 6E-06 57.8 10.2 71 219-298 3-73 (726)
276 TIGR00595 priA primosomal prot 93.9 0.29 6.2E-06 54.7 9.7 75 517-592 24-99 (505)
277 PRK14873 primosome assembly pr 93.8 0.36 7.9E-06 55.4 10.7 91 503-594 171-265 (665)
278 TIGR01547 phage_term_2 phage t 93.8 0.23 5E-06 53.9 8.9 146 237-404 3-151 (396)
279 COG1419 FlhF Flagellar GTP-bin 93.8 0.23 5E-06 52.5 8.1 120 235-394 203-324 (407)
280 TIGR02881 spore_V_K stage V sp 93.6 0.28 6.2E-06 49.8 8.5 18 235-252 42-59 (261)
281 PRK06995 flhF flagellar biosyn 93.6 0.37 8.1E-06 52.9 9.8 20 235-254 256-275 (484)
282 PHA03333 putative ATPase subun 93.5 0.72 1.6E-05 52.0 11.8 56 234-299 186-241 (752)
283 COG3973 Superfamily I DNA and 93.4 0.38 8.2E-06 52.9 9.2 89 206-299 191-285 (747)
284 COG0593 DnaA ATPase involved i 93.2 0.32 6.9E-06 52.0 8.2 50 348-400 175-225 (408)
285 CHL00181 cbbX CbbX; Provisiona 93.1 0.72 1.6E-05 47.5 10.6 20 234-253 58-77 (287)
286 PRK07003 DNA polymerase III su 93.0 0.58 1.3E-05 53.7 10.4 27 347-374 118-144 (830)
287 TIGR02760 TraI_TIGR conjugativ 93.0 0.29 6.3E-06 63.2 8.9 62 219-290 1018-1084(1960)
288 COG1110 Reverse gyrase [DNA re 93.0 0.3 6.6E-06 56.7 8.1 72 507-578 114-191 (1187)
289 PF13173 AAA_14: AAA domain 93.0 0.63 1.4E-05 41.4 8.8 26 348-375 61-86 (128)
290 TIGR02928 orc1/cdc6 family rep 93.0 0.81 1.8E-05 49.0 11.3 25 236-261 41-65 (365)
291 TIGR02524 dot_icm_DotB Dot/Icm 92.9 0.28 6.1E-06 52.1 7.3 28 234-262 133-160 (358)
292 cd01122 GP4d_helicase GP4d_hel 92.9 0.34 7.3E-06 49.5 7.8 55 231-296 26-80 (271)
293 PRK10917 ATP-dependent DNA hel 92.8 0.33 7.1E-06 56.5 8.3 76 517-592 309-389 (681)
294 COG4626 Phage terminase-like p 92.7 0.73 1.6E-05 50.5 10.2 147 220-391 61-223 (546)
295 PF01695 IstB_IS21: IstB-like 92.7 0.19 4E-06 47.8 5.2 48 231-290 43-90 (178)
296 PRK11823 DNA repair protein Ra 92.6 0.37 8.1E-06 52.9 8.1 53 234-298 79-131 (446)
297 KOG0991|consensus 92.6 0.33 7.2E-06 46.9 6.6 28 346-374 111-138 (333)
298 KOG0339|consensus 92.5 0.56 1.2E-05 50.3 8.7 53 400-452 345-397 (731)
299 PRK07764 DNA polymerase III su 92.4 0.87 1.9E-05 53.7 11.2 28 347-375 119-146 (824)
300 TIGR02782 TrbB_P P-type conjug 92.4 0.34 7.3E-06 50.2 7.0 58 221-287 117-175 (299)
301 PRK00771 signal recognition pa 92.3 0.74 1.6E-05 50.2 9.8 26 236-262 96-121 (437)
302 PHA03368 DNA packaging termina 92.3 0.71 1.5E-05 51.9 9.6 133 235-393 254-390 (738)
303 TIGR02525 plasmid_TraJ plasmid 92.3 0.4 8.7E-06 51.1 7.5 46 198-262 130-175 (372)
304 PHA02544 44 clamp loader, smal 92.2 1 2.2E-05 47.2 10.6 39 198-251 18-59 (316)
305 TIGR01425 SRP54_euk signal rec 92.2 1.3 2.9E-05 47.9 11.4 17 237-253 102-118 (429)
306 PRK11889 flhF flagellar biosyn 92.2 1.4 3.1E-05 46.9 11.2 126 236-403 242-373 (436)
307 PRK06964 DNA polymerase III su 92.2 0.97 2.1E-05 47.6 10.2 41 221-262 2-47 (342)
308 TIGR02880 cbbX_cfxQ probable R 92.1 0.74 1.6E-05 47.4 9.2 19 234-252 57-75 (284)
309 PRK12402 replication factor C 92.1 0.89 1.9E-05 48.0 10.1 24 237-261 38-61 (337)
310 PLN03025 replication factor C 92.1 0.91 2E-05 47.6 10.0 24 236-260 35-58 (319)
311 PF06733 DEAD_2: DEAD_2; Inte 92.1 0.11 2.5E-06 49.1 2.9 46 317-362 112-159 (174)
312 PRK09112 DNA polymerase III su 92.1 1.2 2.6E-05 47.3 10.8 26 237-263 47-72 (351)
313 PRK08903 DnaA regulatory inact 92.0 0.59 1.3E-05 46.3 8.1 18 234-251 41-58 (227)
314 PRK08939 primosomal protein Dn 92.0 0.57 1.2E-05 48.6 8.2 28 235-263 156-183 (306)
315 PRK06871 DNA polymerase III su 92.0 0.56 1.2E-05 49.0 8.0 41 221-262 3-50 (325)
316 PRK14964 DNA polymerase III su 92.0 1.6 3.4E-05 48.3 11.8 20 236-255 36-55 (491)
317 COG1474 CDC6 Cdc6-related prot 91.9 1.3 2.8E-05 47.3 10.9 27 236-263 43-69 (366)
318 PF05496 RuvB_N: Holliday junc 91.9 0.37 8E-06 47.0 6.1 15 237-251 52-66 (233)
319 KOG0741|consensus 91.9 0.61 1.3E-05 50.5 8.2 75 174-251 184-272 (744)
320 PRK07994 DNA polymerase III su 91.9 2.2 4.7E-05 48.8 13.1 27 347-374 118-144 (647)
321 TIGR00643 recG ATP-dependent D 91.7 0.69 1.5E-05 53.4 9.3 76 517-592 283-363 (630)
322 COG0552 FtsY Signal recognitio 91.7 1.7 3.8E-05 44.7 10.9 134 237-404 141-280 (340)
323 COG3972 Superfamily I DNA and 91.7 0.79 1.7E-05 49.2 8.6 80 208-298 151-230 (660)
324 TIGR03015 pepcterm_ATPase puta 91.6 1.5 3.3E-05 44.6 10.8 32 220-251 23-59 (269)
325 KOG1513|consensus 91.6 0.26 5.6E-06 55.4 5.2 78 562-639 851-939 (1300)
326 PRK10590 ATP-dependent RNA hel 91.5 17 0.00036 40.3 19.7 218 404-646 128-369 (456)
327 COG1198 PriA Primosomal protei 91.5 0.5 1.1E-05 54.4 7.6 92 500-592 225-319 (730)
328 PRK10436 hypothetical protein; 91.5 0.74 1.6E-05 50.6 8.7 47 198-261 195-243 (462)
329 PF00004 AAA: ATPase family as 91.4 1.7 3.8E-05 38.3 9.8 16 349-364 59-74 (132)
330 PRK08533 flagellar accessory p 91.4 2.4 5.2E-05 42.1 11.6 54 233-298 22-75 (230)
331 cd00561 CobA_CobO_BtuR ATP:cor 91.3 2.5 5.3E-05 39.2 10.7 55 346-404 93-149 (159)
332 PRK14956 DNA polymerase III su 91.3 0.63 1.4E-05 50.9 7.8 18 237-254 42-59 (484)
333 PF13177 DNA_pol3_delta2: DNA 91.3 1.6 3.5E-05 40.7 9.7 28 347-375 101-128 (162)
334 PRK06090 DNA polymerase III su 91.2 1.6 3.5E-05 45.5 10.4 42 220-262 3-51 (319)
335 PRK14949 DNA polymerase III su 91.1 0.72 1.6E-05 54.0 8.3 27 347-374 118-144 (944)
336 PRK07993 DNA polymerase III su 91.1 1.1 2.4E-05 47.1 9.3 42 220-262 2-50 (334)
337 PRK08699 DNA polymerase III su 91.0 1.5 3.3E-05 45.9 10.2 40 221-261 2-46 (325)
338 KOG0331|consensus 91.0 0.22 4.8E-06 54.4 4.0 71 402-475 216-286 (519)
339 PRK14958 DNA polymerase III su 90.9 1.3 2.9E-05 49.4 10.1 27 347-374 118-144 (509)
340 PRK13851 type IV secretion sys 90.8 0.34 7.4E-06 51.0 5.1 45 231-287 158-202 (344)
341 PRK14960 DNA polymerase III su 90.8 0.48 1E-05 53.6 6.4 27 347-374 117-143 (702)
342 COG0470 HolB ATPase involved i 90.7 1.4 3.1E-05 46.1 9.9 27 236-263 24-51 (325)
343 PRK12323 DNA polymerase III su 90.7 1.7 3.6E-05 49.3 10.5 24 237-261 40-63 (700)
344 PRK07940 DNA polymerase III su 90.7 2.3 4.9E-05 45.9 11.3 19 236-254 37-55 (394)
345 PRK04328 hypothetical protein; 90.7 0.79 1.7E-05 46.2 7.4 53 234-298 22-74 (249)
346 PRK08691 DNA polymerase III su 90.6 1.1 2.4E-05 51.1 9.2 19 236-254 39-57 (709)
347 PRK07471 DNA polymerase III su 90.5 1.9 4.2E-05 46.0 10.5 26 237-263 43-68 (365)
348 PRK13900 type IV secretion sys 90.5 0.74 1.6E-05 48.4 7.3 45 232-288 157-201 (332)
349 KOG2028|consensus 90.5 0.9 2E-05 46.9 7.5 102 236-399 163-264 (554)
350 PRK12726 flagellar biosynthesi 90.5 1.3 2.8E-05 46.9 8.9 20 235-254 206-225 (407)
351 PF03969 AFG1_ATPase: AFG1-lik 90.4 2.7 5.9E-05 44.7 11.4 114 235-400 62-175 (362)
352 PRK06731 flhF flagellar biosyn 90.2 2.9 6.4E-05 42.4 11.1 129 234-404 74-208 (270)
353 TIGR01420 pilT_fam pilus retra 90.2 0.8 1.7E-05 48.5 7.4 43 234-286 121-163 (343)
354 PRK14723 flhF flagellar biosyn 90.2 1.2 2.6E-05 51.5 9.1 57 330-394 249-306 (767)
355 PTZ00146 fibrillarin; Provisio 90.2 8.5 0.00019 39.4 14.2 21 237-257 134-154 (293)
356 TIGR00064 ftsY signal recognit 90.1 3.8 8.2E-05 41.8 11.9 19 236-254 73-91 (272)
357 PRK05986 cob(I)alamin adenolsy 90.1 1.5 3.2E-05 41.8 8.2 147 234-404 21-169 (191)
358 TIGR00580 mfd transcription-re 90.1 0.87 1.9E-05 54.5 8.2 76 517-592 499-579 (926)
359 COG2804 PulE Type II secretory 89.9 0.46 9.9E-06 51.6 5.1 41 222-263 243-285 (500)
360 PRK06645 DNA polymerase III su 89.8 1.9 4.2E-05 47.9 10.2 19 236-254 44-62 (507)
361 KOG0330|consensus 89.8 0.22 4.7E-06 51.6 2.5 215 409-647 187-425 (476)
362 KOG0336|consensus 89.7 0.31 6.7E-06 50.7 3.5 69 403-475 345-413 (629)
363 PRK14961 DNA polymerase III su 89.7 0.93 2E-05 48.5 7.4 24 237-261 40-63 (363)
364 TIGR03881 KaiC_arch_4 KaiC dom 89.6 2.5 5.5E-05 41.8 10.1 52 234-297 19-70 (229)
365 PRK13341 recombination factor 89.6 1.1 2.4E-05 52.1 8.3 17 236-252 53-69 (725)
366 PRK05973 replicative DNA helic 89.5 0.96 2.1E-05 44.9 6.7 83 203-298 23-115 (237)
367 PRK14959 DNA polymerase III su 89.5 0.7 1.5E-05 52.3 6.4 20 236-255 39-58 (624)
368 TIGR03499 FlhF flagellar biosy 89.5 0.79 1.7E-05 47.1 6.4 19 235-253 194-212 (282)
369 TIGR00767 rho transcription te 89.4 2.8 6.1E-05 44.8 10.4 28 232-260 165-192 (415)
370 PRK05703 flhF flagellar biosyn 89.4 1.2 2.6E-05 48.5 8.1 57 331-394 286-343 (424)
371 PRK12727 flagellar biosynthesi 89.3 2.2 4.8E-05 47.2 9.9 19 234-252 349-367 (559)
372 TIGR02538 type_IV_pilB type IV 89.2 1.2 2.5E-05 50.7 8.1 37 223-260 302-340 (564)
373 PRK13342 recombination factor 89.1 1.2 2.6E-05 48.6 7.9 17 236-252 37-53 (413)
374 COG1200 RecG RecG-like helicas 89.0 2.1 4.6E-05 48.1 9.6 86 507-592 299-390 (677)
375 PRK14965 DNA polymerase III su 88.9 3.3 7.2E-05 47.1 11.4 28 346-374 117-144 (576)
376 PRK06067 flagellar accessory p 88.9 2.2 4.7E-05 42.5 9.0 53 234-298 24-76 (234)
377 PRK09111 DNA polymerase III su 88.8 3.2 7E-05 47.3 11.1 48 198-261 21-71 (598)
378 TIGR03877 thermo_KaiC_1 KaiC d 88.8 0.85 1.8E-05 45.6 5.9 53 234-298 20-72 (237)
379 COG1435 Tdk Thymidine kinase [ 88.6 0.74 1.6E-05 43.6 4.9 103 236-374 5-107 (201)
380 COG3267 ExeA Type II secretory 88.4 3.9 8.5E-05 40.5 9.9 27 233-260 48-75 (269)
381 PF05707 Zot: Zonular occluden 88.4 0.48 1E-05 45.7 3.7 18 238-255 3-20 (193)
382 PRK05563 DNA polymerase III su 88.3 1.5 3.3E-05 49.6 8.2 20 236-255 39-58 (559)
383 COG1702 PhoH Phosphate starvat 88.2 0.69 1.5E-05 47.7 4.8 46 218-263 126-171 (348)
384 PRK14963 DNA polymerase III su 88.2 2.5 5.5E-05 47.1 9.7 24 237-261 38-61 (504)
385 PRK13764 ATPase; Provisional 88.0 1.2 2.6E-05 50.4 7.0 46 197-261 237-282 (602)
386 PF02572 CobA_CobO_BtuR: ATP:c 87.7 9.5 0.00021 35.8 11.7 143 238-404 6-150 (172)
387 COG0513 SrmB Superfamily II DN 87.7 0.43 9.3E-06 53.5 3.3 223 402-646 151-398 (513)
388 PF06745 KaiC: KaiC; InterPro 87.5 1.1 2.3E-05 44.5 5.7 53 234-298 18-71 (226)
389 PRK14951 DNA polymerase III su 87.4 4.7 0.0001 46.0 11.3 24 237-261 40-63 (618)
390 PRK14952 DNA polymerase III su 87.3 1.5 3.3E-05 49.6 7.3 28 346-374 116-143 (584)
391 PRK10689 transcription-repair 87.3 1.8 3.8E-05 53.2 8.4 76 517-592 648-728 (1147)
392 COG1219 ClpX ATP-dependent pro 87.3 0.57 1.2E-05 47.6 3.5 27 234-262 96-122 (408)
393 PTZ00293 thymidine kinase; Pro 87.2 0.81 1.8E-05 44.4 4.4 38 235-283 4-41 (211)
394 cd01130 VirB11-like_ATPase Typ 87.1 1.3 2.8E-05 42.4 5.8 32 220-251 9-41 (186)
395 PF01443 Viral_helicase1: Vira 87.1 0.41 8.8E-06 47.6 2.4 19 238-257 1-19 (234)
396 TIGR00708 cobA cob(I)alamin ad 87.0 4.1 8.8E-05 38.3 8.8 55 346-404 95-151 (173)
397 PTZ00110 helicase; Provisional 86.9 9.6 0.00021 43.2 13.6 199 403-623 255-479 (545)
398 PRK14962 DNA polymerase III su 86.8 1.5 3.2E-05 48.5 6.8 18 237-254 38-55 (472)
399 PRK14721 flhF flagellar biosyn 86.8 2.1 4.6E-05 46.3 7.8 20 234-253 190-209 (420)
400 KOG0744|consensus 86.7 4.3 9.4E-05 41.5 9.2 101 234-340 176-311 (423)
401 TIGR01241 FtsH_fam ATP-depende 86.7 2.9 6.3E-05 46.8 9.2 17 235-251 88-104 (495)
402 PF03237 Terminase_6: Terminas 86.7 4.1 8.8E-05 43.4 10.2 114 239-371 1-120 (384)
403 cd03115 SRP The signal recogni 86.7 6.1 0.00013 37.1 10.2 15 238-252 3-17 (173)
404 PF05729 NACHT: NACHT domain 86.7 4.1 8.9E-05 37.5 9.0 27 237-264 2-28 (166)
405 KOG0298|consensus 86.7 0.93 2E-05 54.0 5.2 100 516-619 1219-1318(1394)
406 TIGR02237 recomb_radB DNA repa 86.5 3.7 8.1E-05 39.9 8.9 26 234-259 11-36 (209)
407 KOG0741|consensus 86.2 5 0.00011 43.8 9.8 68 203-283 494-573 (744)
408 TIGR02639 ClpA ATP-dependent C 86.2 2.8 6E-05 49.4 9.0 25 235-260 203-227 (731)
409 TIGR03819 heli_sec_ATPase heli 86.2 1.9 4.1E-05 45.5 6.9 63 211-287 155-218 (340)
410 KOG0341|consensus 86.1 0.27 5.7E-06 50.8 0.5 69 403-475 304-372 (610)
411 PRK10416 signal recognition pa 86.1 3.1 6.7E-05 43.5 8.4 49 347-395 195-246 (318)
412 PRK09376 rho transcription ter 86.0 3.6 7.8E-05 43.8 8.7 40 222-262 153-195 (416)
413 PF00437 T2SE: Type II/IV secr 85.9 0.98 2.1E-05 46.1 4.6 44 233-287 125-168 (270)
414 PRK03992 proteasome-activating 85.9 3.1 6.7E-05 44.9 8.6 51 198-251 128-181 (389)
415 TIGR01243 CDC48 AAA family ATP 85.8 2.9 6.2E-05 49.4 8.9 17 235-251 487-503 (733)
416 PRK11034 clpA ATP-dependent Cl 85.7 3.2 6.9E-05 48.7 9.0 18 235-252 207-224 (758)
417 PHA00729 NTP-binding motif con 85.6 2.2 4.7E-05 41.9 6.5 15 237-251 19-33 (226)
418 PRK14950 DNA polymerase III su 85.6 3.5 7.5E-05 47.2 9.2 24 236-260 39-62 (585)
419 KOG0742|consensus 85.6 1.5 3.2E-05 46.1 5.5 46 199-251 353-400 (630)
420 COG0630 VirB11 Type IV secreto 85.5 1.3 2.9E-05 46.1 5.4 58 218-287 125-183 (312)
421 PRK04195 replication factor C 85.5 3.5 7.6E-05 46.0 9.1 17 235-251 39-55 (482)
422 TIGR00959 ffh signal recogniti 85.5 8.3 0.00018 42.0 11.6 18 237-254 101-118 (428)
423 PRK14969 DNA polymerase III su 85.3 6.8 0.00015 44.1 11.2 18 237-254 40-57 (527)
424 KOG0738|consensus 85.3 4.4 9.6E-05 42.5 8.7 16 236-251 246-261 (491)
425 PRK14701 reverse gyrase; Provi 85.3 2.7 5.9E-05 53.3 8.7 61 517-577 121-187 (1638)
426 TIGR02012 tigrfam_recA protein 85.3 2.5 5.3E-05 44.1 7.1 44 234-288 54-97 (321)
427 PF10593 Z1: Z1 domain; Inter 85.2 2.6 5.7E-05 42.0 7.1 111 534-655 103-218 (239)
428 PRK10867 signal recognition pa 85.2 4.9 0.00011 43.8 9.7 18 237-254 102-119 (433)
429 cd01129 PulE-GspE PulE/GspE Th 85.2 1.7 3.6E-05 44.2 5.8 37 223-260 66-104 (264)
430 PRK00440 rfc replication facto 85.1 8.1 0.00018 40.2 11.3 23 237-260 40-62 (319)
431 cd01128 rho_factor Transcripti 85.1 3.2 6.8E-05 41.7 7.6 21 231-251 12-32 (249)
432 TIGR02655 circ_KaiC circadian 84.8 3.6 7.9E-05 45.8 8.7 53 234-298 262-314 (484)
433 PRK14955 DNA polymerase III su 84.8 5.9 0.00013 42.9 10.2 18 237-254 40-57 (397)
434 PRK12724 flagellar biosynthesi 84.7 7.7 0.00017 41.8 10.6 22 236-257 224-245 (432)
435 COG5008 PilU Tfp pilus assembl 84.6 1 2.3E-05 44.5 3.7 23 236-259 128-150 (375)
436 PRK09354 recA recombinase A; P 84.5 2.7 5.8E-05 44.3 7.0 44 234-288 59-102 (349)
437 KOG0732|consensus 84.5 2.2 4.7E-05 50.7 6.8 53 198-251 262-315 (1080)
438 TIGR00678 holB DNA polymerase 84.2 7.3 0.00016 37.1 9.6 26 236-262 15-40 (188)
439 PF10412 TrwB_AAD_bind: Type I 84.2 1.6 3.5E-05 47.1 5.5 49 230-289 10-58 (386)
440 PRK14954 DNA polymerase III su 84.1 4.7 0.0001 46.1 9.3 19 236-254 39-57 (620)
441 PRK14957 DNA polymerase III su 84.1 3.8 8.2E-05 46.0 8.4 28 346-374 117-144 (546)
442 PRK12608 transcription termina 84.0 9.4 0.0002 40.5 10.8 38 225-263 120-160 (380)
443 PF12846 AAA_10: AAA-like doma 84.0 1.6 3.6E-05 44.9 5.3 43 235-288 1-43 (304)
444 PF13555 AAA_29: P-loop contai 84.0 0.37 8.1E-06 36.7 0.3 25 234-260 22-46 (62)
445 PRK08451 DNA polymerase III su 84.0 11 0.00024 42.2 11.9 29 346-375 115-143 (535)
446 cd00984 DnaB_C DnaB helicase C 83.8 4.9 0.00011 40.0 8.5 40 233-282 11-50 (242)
447 cd01126 TraG_VirD4 The TraG/Tr 83.7 0.76 1.6E-05 49.7 2.7 47 237-296 1-47 (384)
448 PRK00080 ruvB Holliday junctio 83.5 1.8 4E-05 45.5 5.5 17 236-252 52-68 (328)
449 PRK05896 DNA polymerase III su 83.5 2.9 6.2E-05 47.3 7.1 25 236-261 39-63 (605)
450 cd01131 PilT Pilus retraction 83.3 1.8 3.9E-05 41.9 4.9 23 238-261 4-26 (198)
451 cd00544 CobU Adenosylcobinamid 83.2 6.8 0.00015 36.8 8.6 45 238-296 2-46 (169)
452 PF02534 T4SS-DNA_transf: Type 83.2 1 2.3E-05 50.0 3.7 50 236-298 45-94 (469)
453 KOG0058|consensus 83.1 2.5 5.5E-05 47.9 6.4 42 346-392 620-661 (716)
454 COG1197 Mfd Transcription-repa 82.7 5.2 0.00011 48.0 9.1 77 516-592 641-722 (1139)
455 COG2255 RuvB Holliday junction 82.7 2.6 5.7E-05 42.4 5.7 26 332-361 91-116 (332)
456 PRK06647 DNA polymerase III su 82.2 4.8 0.0001 45.6 8.4 24 237-261 40-63 (563)
457 KOG1807|consensus 82.2 2 4.4E-05 48.5 5.2 71 220-295 378-448 (1025)
458 PRK10865 protein disaggregatio 82.1 8.2 0.00018 46.2 10.7 24 236-260 200-223 (857)
459 PRK13897 type IV secretion sys 82.0 1.1 2.4E-05 50.9 3.2 49 236-297 159-207 (606)
460 TIGR03878 thermo_KaiC_2 KaiC d 81.9 3.6 7.8E-05 41.7 6.6 27 234-260 35-61 (259)
461 PRK13700 conjugal transfer pro 81.9 2 4.3E-05 49.2 5.1 55 206-263 156-212 (732)
462 TIGR02533 type_II_gspE general 81.8 1.5 3.3E-05 48.7 4.2 37 223-260 228-266 (486)
463 TIGR03346 chaperone_ClpB ATP-d 81.8 7.2 0.00016 46.8 10.1 24 236-260 195-218 (852)
464 PRK09183 transposase/IS protei 81.7 3.3 7E-05 42.0 6.2 23 231-253 98-120 (259)
465 PRK14948 DNA polymerase III su 81.7 10 0.00022 43.5 10.8 25 236-261 39-63 (620)
466 cd01127 TrwB Bacterial conjuga 81.5 1.8 3.9E-05 47.2 4.6 50 229-289 36-85 (410)
467 TIGR02788 VirB11 P-type DNA tr 81.4 2.2 4.7E-05 44.5 4.9 20 232-251 141-160 (308)
468 COG0210 UvrD Superfamily I DNA 81.3 4.1 9E-05 47.4 7.8 71 220-299 2-72 (655)
469 KOG0347|consensus 81.2 2.5 5.3E-05 46.1 5.2 127 403-540 315-445 (731)
470 cd01393 recA_like RecA is a b 80.9 5.8 0.00013 39.1 7.7 46 234-284 18-63 (226)
471 TIGR00416 sms DNA repair prote 80.9 4.7 0.0001 44.4 7.6 91 234-361 93-183 (454)
472 KOG1806|consensus 80.8 2.8 6E-05 49.0 5.7 72 217-297 735-806 (1320)
473 TIGR02868 CydC thiol reductant 80.7 5.1 0.00011 45.3 8.1 30 346-375 486-515 (529)
474 PHA00012 I assembly protein 80.6 6.6 0.00014 40.6 7.8 24 238-261 4-27 (361)
475 cd01125 repA Hexameric Replica 80.6 8.3 0.00018 38.5 8.7 45 237-281 3-48 (239)
476 PRK07399 DNA polymerase III su 80.3 13 0.00028 38.8 10.3 59 327-392 104-162 (314)
477 TIGR03345 VI_ClpV1 type VI sec 80.3 7.4 0.00016 46.5 9.4 38 333-376 658-695 (852)
478 KOG2227|consensus 80.2 8.2 0.00018 41.7 8.6 25 235-260 175-199 (529)
479 TIGR00635 ruvB Holliday juncti 80.2 1.7 3.8E-05 45.1 3.8 16 236-251 31-46 (305)
480 TIGR02238 recomb_DMC1 meiotic 79.7 12 0.00026 39.0 9.8 58 235-297 96-154 (313)
481 COG1485 Predicted ATPase [Gene 79.6 14 0.0003 38.5 9.8 112 236-399 66-177 (367)
482 PRK06904 replicative DNA helic 79.5 18 0.00039 40.1 11.5 118 232-362 218-348 (472)
483 cd00268 DEADc DEAD-box helicas 79.4 12 0.00025 36.1 9.1 72 517-592 68-149 (203)
484 TIGR00602 rad24 checkpoint pro 79.3 11 0.00024 43.2 10.0 48 197-252 80-127 (637)
485 CHL00095 clpC Clp protease ATP 79.3 13 0.00028 44.4 11.2 19 235-253 200-218 (821)
486 COG1074 RecB ATP-dependent exo 79.2 3.5 7.7E-05 51.0 6.5 57 234-296 15-71 (1139)
487 COG4604 CeuD ABC-type enteroch 79.1 7.3 0.00016 37.2 7.0 136 234-375 26-180 (252)
488 TIGR00614 recQ_fam ATP-depende 79.0 5.7 0.00012 44.1 7.7 59 518-576 51-109 (470)
489 COG1132 MdlB ABC-type multidru 79.0 3.1 6.7E-05 47.6 5.6 30 346-375 481-510 (567)
490 PF08423 Rad51: Rad51; InterP 78.9 4.8 0.0001 40.7 6.3 105 236-361 39-146 (256)
491 PRK14953 DNA polymerase III su 78.6 7.5 0.00016 43.2 8.3 18 237-254 40-57 (486)
492 KOG1513|consensus 78.5 2.1 4.6E-05 48.5 3.9 161 217-396 261-457 (1300)
493 cd01123 Rad51_DMC1_radA Rad51_ 78.4 6.9 0.00015 38.8 7.3 25 234-258 18-42 (235)
494 TIGR03743 SXT_TraD conjugative 78.3 6 0.00013 45.5 7.6 55 235-300 176-232 (634)
495 PHA00350 putative assembly pro 78.2 7.2 0.00016 41.8 7.6 23 238-260 4-27 (399)
496 PRK08058 DNA polymerase III su 78.0 14 0.00031 38.8 9.9 28 346-374 108-135 (329)
497 TIGR00665 DnaB replicative DNA 77.7 13 0.00029 40.8 10.0 54 233-297 193-246 (434)
498 TIGR03600 phage_DnaB phage rep 77.6 14 0.00029 40.5 9.9 66 218-294 177-242 (421)
499 KOG0342|consensus 77.6 1.9 4.2E-05 46.3 3.1 199 401-623 205-432 (543)
500 PRK14971 DNA polymerase III su 77.5 11 0.00024 43.2 9.5 28 346-374 119-146 (614)
No 1
>KOG0335|consensus
Probab=100.00 E-value=7.5e-75 Score=599.38 Aligned_cols=460 Identities=49% Similarity=0.746 Sum_probs=413.6
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCcccccccCCCccceeeecCCCCCCCCCc
Q psy1604 120 RDACFKCSEPKPEGAGGGAPGGADGAPFDPAKPPLYIPKDVDQSEDNLFSSGIQTGINFSGWENVEVKVSGDNPPRPIES 199 (693)
Q Consensus 120 r~~c~~c~~~~~~~~~~~~~~~~~~~~~d~~~~~~y~p~~~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~~~~~~~~~ 199 (693)
+..|.+|+++++....+.... ........+.++.....+...|.. ..+++||++++++.++++|.+.|.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~k~~~~~~~~~~~~~~~~~-~~~~~nfd~~~~i~v~~~G~~~p~~i~~ 75 (482)
T KOG0335|consen 3 LRSGRNCGEGGPRPKHCGNST------MEEEKQKGKKGPLKAYLEQAFFLG-ISTGINFDKYNDIPVKVSGRDVPPHIPT 75 (482)
T ss_pred CccccccCCCCCCCccccccc------ccccccccccCCcccchhhhhhhc-cchhhccCCccceeeeccCCccCCCccc
Confidence 346777777766654433221 011233444445455555555533 8899999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCC--CCCCeE
Q psy1604 200 FESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGY--CAQPEV 277 (693)
Q Consensus 200 f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~--~~~~~v 277 (693)
|.+..+.+.+..+++..+|..|||+|+.+||.+..|+++++||+||||||.+|++|++.+++.......... ...|++
T Consensus 76 f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~ 155 (482)
T KOG0335|consen 76 FDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRA 155 (482)
T ss_pred ccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999998764322221 235899
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccc
Q psy1604 278 IICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEA 357 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEa 357 (693)
||++|||+|+.|++++.+++.....+++...||+.+...+.+.+.++|+|+||||++|.++++.+.+.+++++++|||||
T Consensus 156 lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEA 235 (482)
T KOG0335|consen 156 LILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEA 235 (482)
T ss_pred EEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh-CCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 358 DRMLD-MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 358 h~l~~-~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
|+|+| ++|.+++++|+....++....+|.+|||||+|..++.++..+
T Consensus 236 DrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~f-------------------------------- 283 (482)
T KOG0335|consen 236 DRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADF-------------------------------- 283 (482)
T ss_pred HHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHH--------------------------------
Confidence 99999 999999999999998988889999999999999999877776
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK 516 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 516 (693)
+.++|+++.++..+....++.|.+..+.+..|...|+++|...
T Consensus 284 -------------------------------------l~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~ 326 (482)
T KOG0335|consen 284 -------------------------------------LKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKD 326 (482)
T ss_pred -------------------------------------hhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcc
Confidence 5566999999999999999999999999999999999999853
Q ss_pred C----CC-----cEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCC
Q psy1604 517 D----ED-----GVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGI 587 (693)
Q Consensus 517 ~----~~-----kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v 587 (693)
. .. +++|||.+++.++.++.+|...++++..+||+.++.+|++.++.|++|++.+||||++++||||||+|
T Consensus 327 ~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V 406 (482)
T KOG0335|consen 327 DGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNV 406 (482)
T ss_pred cCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCC
Confidence 3 33 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhccCCCC
Q psy1604 588 RHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKFGGGGG 656 (693)
Q Consensus 588 ~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~~ 656 (693)
+|||+||+|.+..+|+||+|||||.|+.|.++.|++ ..+..+.+.|.++|.+++|++|+||.+++...
T Consensus 407 ~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n-~~~~~i~~~L~~~l~ea~q~vP~wl~~~~~~~ 474 (482)
T KOG0335|consen 407 KHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN-EKNQNIAKALVEILTEANQEVPQWLSELSRER 474 (482)
T ss_pred ceeEEeecCcchhhHHHhccccccCCCCceeEEEec-cccchhHHHHHHHHHHhcccCcHHHHhhhhhc
Confidence 999999999999999999999999999999999999 67889999999999999999999999966544
No 2
>KOG0331|consensus
Probab=100.00 E-value=2.1e-71 Score=584.18 Aligned_cols=383 Identities=42% Similarity=0.659 Sum_probs=352.1
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEE
Q psy1604 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVI 278 (693)
Q Consensus 199 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vL 278 (693)
.|.+++|++.+...++..||..|||+|.+.||.+++|+|++..|.||||||++|++|++.++...... ..+..+|++|
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~--~~~~~~P~vL 169 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGK--LSRGDGPIVL 169 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcccc--ccCCCCCeEE
Confidence 89999999999999999999999999999999999999999999999999999999999999873111 1225688999
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccch
Q psy1604 279 ICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 358 (693)
Q Consensus 279 il~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah 358 (693)
||+||||||.|+.+.+.+|.....++..++|||.+...|.+.+.++.+|+|+||++|.++++.+.++++++.|+|+||||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD 249 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhh
Q psy1604 359 RMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRML 438 (693)
Q Consensus 359 ~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~ 438 (693)
+|++++|.+++++|+..... +.+|++|+|||+|.+++.++..|
T Consensus 250 rMldmGFe~qI~~Il~~i~~---~~rQtlm~saTwp~~v~~lA~~f---------------------------------- 292 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPR---PDRQTLMFSATWPKEVRQLAEDF---------------------------------- 292 (519)
T ss_pred hhhccccHHHHHHHHHhcCC---CcccEEEEeeeccHHHHHHHHHH----------------------------------
Confidence 99999999999999987532 35599999999999999999888
Q ss_pred hcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecc--cccccceeEEEEEccchhHHHHHHHHHhcc
Q psy1604 439 DMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGII--GGASTDVVQTILEVPKQQKKKKLLELLREK 516 (693)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 516 (693)
+. +|+.+.++.. ..++.++.|.+..+....|...|..+|...
T Consensus 293 -----------------------------------l~-~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~ 336 (519)
T KOG0331|consen 293 -----------------------------------LN-NPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDI 336 (519)
T ss_pred -----------------------------------hc-CceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHH
Confidence 43 6666666544 367778888888888888888888888763
Q ss_pred ---CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEc
Q psy1604 517 ---DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINY 593 (693)
Q Consensus 517 ---~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~ 593 (693)
..+|+||||++++.|+.|+..|+..++++..|||+.+|.+|+.+++.|++|++.||||||+++||||||+|++||||
T Consensus 337 ~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIny 416 (519)
T KOG0331|consen 337 SSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINY 416 (519)
T ss_pred hccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeC
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhccCCCCC
Q psy1604 594 DLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKFGGGGGG 657 (693)
Q Consensus 594 d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~~~ 657 (693)
|+|.+.++|+||+|||||+|++|.+++|++. .+...+..+++.+++++|.+|+.|..++...+
T Consensus 417 dfP~~vEdYVHRiGRTGRa~~~G~A~tfft~-~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~ 479 (519)
T KOG0331|consen 417 DFPNNVEDYVHRIGRTGRAGKKGTAITFFTS-DNAKLARELIKVLREAGQTVPPDLLEYARVSG 479 (519)
T ss_pred CCCCCHHHHHhhcCccccCCCCceEEEEEeH-HHHHHHHHHHHHHHHccCCCChHHHHHHhhcc
Confidence 9999999999999999999999999999994 57889999999999999999999999976543
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.2e-66 Score=574.08 Aligned_cols=394 Identities=40% Similarity=0.669 Sum_probs=345.5
Q ss_pred ecCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCc
Q psy1604 188 VSGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGEL 267 (693)
Q Consensus 188 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~ 267 (693)
+.+.+.|.|+.+|++++|++.+++.|.++||.+|||+|.++||.+++|+|++++||||||||++|++|++.++...+..
T Consensus 120 ~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~- 198 (545)
T PTZ00110 120 IAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL- 198 (545)
T ss_pred ecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc-
Confidence 3678889999999999999999999999999999999999999999999999999999999999999999988765321
Q ss_pred ccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCC
Q psy1604 268 VTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLA 347 (693)
Q Consensus 268 ~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~ 347 (693)
....++.+|||+|||+||.|+.+.+.+|.....+++.+++|+.....+...+..+++|+|+||++|.+++.+....+.
T Consensus 199 --~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~ 276 (545)
T PTZ00110 199 --RYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLR 276 (545)
T ss_pred --cCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChh
Confidence 113467899999999999999999999998888999999999998888888889999999999999999998888899
Q ss_pred ceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhcccccccee
Q psy1604 348 SVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVR 427 (693)
Q Consensus 348 ~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 427 (693)
++++|||||||+|++++|..++..++.... +++|++++|||+|.++..++..++
T Consensus 277 ~v~~lViDEAd~mld~gf~~~i~~il~~~~----~~~q~l~~SAT~p~~v~~l~~~l~---------------------- 330 (545)
T PTZ00110 277 RVTYLVLDEADRMLDMGFEPQIRKIVSQIR----PDRQTLMWSATWPKEVQSLARDLC---------------------- 330 (545)
T ss_pred hCcEEEeehHHhhhhcchHHHHHHHHHhCC----CCCeEEEEEeCCCHHHHHHHHHHh----------------------
Confidence 999999999999999999999999987643 478999999999998877655541
Q ss_pred EEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeeccc-ccccceeEEEEEccchhHH
Q psy1604 428 FVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIG-GASTDVVQTILEVPKQQKK 506 (693)
Q Consensus 428 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~ 506 (693)
...++.+.++... ....++.+.+..+....|.
T Consensus 331 -----------------------------------------------~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~ 363 (545)
T PTZ00110 331 -----------------------------------------------KEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKR 363 (545)
T ss_pred -----------------------------------------------ccCCEEEEECCCccccCCCeeEEEEEEechhHH
Confidence 1111222222111 2234455666666667788
Q ss_pred HHHHHHHhcc--CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCC
Q psy1604 507 KKLLELLREK--DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDI 584 (693)
Q Consensus 507 ~~L~~~l~~~--~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDi 584 (693)
..|.+++... ...++||||++++.|+.++..|...++++..+||++++.+|+.+++.|++|+.+|||||+++++||||
T Consensus 364 ~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi 443 (545)
T PTZ00110 364 GKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDV 443 (545)
T ss_pred HHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCc
Confidence 8888888763 56799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhccCCCCCC
Q psy1604 585 KGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKFGGGGGGY 658 (693)
Q Consensus 585 p~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~~~~ 658 (693)
|++++||+||+|.++++|+||+||+||.|++|.|++|+++ ++..++++|.+.|+...|++|++|.+++....+
T Consensus 444 ~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~-~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~~ 516 (545)
T PTZ00110 444 KDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTP-DKYRLARDLVKVLREAKQPVPPELEKLSNERSN 516 (545)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECc-chHHHHHHHHHHHHHccCCCCHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999995 477899999999999999999999999865443
No 4
>KOG0330|consensus
Probab=100.00 E-value=6.2e-67 Score=514.88 Aligned_cols=366 Identities=37% Similarity=0.540 Sum_probs=331.9
Q ss_pred CCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCC
Q psy1604 194 PRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCA 273 (693)
Q Consensus 194 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~ 273 (693)
.....+|.++++++.++++++..++..||++|+++||.++.|+|+|..|+||||||.+|++|++++|+.++.
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-------- 128 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-------- 128 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC--------
Confidence 345578999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHh-cCCcCCCceeEE
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILD-RGRISLASVRFV 352 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~-~~~~~l~~~~~l 352 (693)
.+++|||+||||||.|+.+.+..++...++++.++.||.....+..++.+.++|+|+||++|++++. .+.+++.+++++
T Consensus 129 ~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 129 LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999999998 456889999999
Q ss_pred EEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEec
Q psy1604 353 VLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLD 432 (693)
Q Consensus 353 VlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d 432 (693)
|+||||+++++.|...+.+|+...+ ..+|+++||||++..+.++....
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~ip----~erqt~LfsATMt~kv~kL~ras---------------------------- 256 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVIP----RERQTFLFSATMTKKVRKLQRAS---------------------------- 256 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhcC----ccceEEEEEeecchhhHHHHhhc----------------------------
Confidence 9999999999999999999998754 58999999999999887753111
Q ss_pred hhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHH
Q psy1604 433 EADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLEL 512 (693)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~ 512 (693)
+ +++..+.+.......+.+.|.+..++...|...|+.+
T Consensus 257 -----------------------------------------l-~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~l 294 (476)
T KOG0330|consen 257 -----------------------------------------L-DNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYL 294 (476)
T ss_pred -----------------------------------------c-CCCeEEeccchhcchHHhhhheEeccccccchhHHHH
Confidence 1 3444555555555666777888888899999999999
Q ss_pred HhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEE
Q psy1604 513 LREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVIN 592 (693)
Q Consensus 513 l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~ 592 (693)
+++..+..+||||++...++.++-.|..+|+.+..+||+|++..|.-.++.|++|.++||+|||+++||+|||.|++|||
T Consensus 295 l~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN 374 (476)
T KOG0330|consen 295 LNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN 374 (476)
T ss_pred HHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcC
Q psy1604 593 YDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAG 642 (693)
Q Consensus 593 ~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~ 642 (693)
||+|.+..+|+||+||++|+|+.|.++.|++. .|-.....|...+..+.
T Consensus 375 yDiP~~skDYIHRvGRtaRaGrsG~~ItlVtq-yDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 375 YDIPTHSKDYIHRVGRTARAGRSGKAITLVTQ-YDVELVQRIEHALGKKL 423 (476)
T ss_pred cCCCCcHHHHHHHcccccccCCCcceEEEEeh-hhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999986 55556666666665554
No 5
>KOG0333|consensus
Probab=100.00 E-value=8.9e-66 Score=523.30 Aligned_cols=402 Identities=38% Similarity=0.615 Sum_probs=364.6
Q ss_pred ccceeeecCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 182 ENVEVKVSGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 182 ~~~~v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
++..+...|...|.|+.+|++.+|+.++++.+.+.||..|+|+|+.++|..++++|+|..|.||||||++|++|++..+.
T Consensus 229 edynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~Is 308 (673)
T KOG0333|consen 229 EDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWIS 308 (673)
T ss_pred cceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHH
Confidence 34557778999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCcc-cCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHh
Q psy1604 262 ESPGELV-TGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILD 340 (693)
Q Consensus 262 ~~~~~~~-~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~ 340 (693)
.-|+-.. .....+|+++||+|||+|++|+.++-.+|+...+++++.++||.+..++.-++..+|+|+|+||++|.+.|+
T Consensus 309 slP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Le 388 (673)
T KOG0333|consen 309 SLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLE 388 (673)
T ss_pred cCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHH
Confidence 7663221 133678999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred cCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCC---------------------CCcceEEeeccCchhHHh
Q psy1604 341 RGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDV---------------------ANRQTLMFSATFPETIQK 399 (693)
Q Consensus 341 ~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~---------------------~~~q~lllSAT~~~~~~~ 399 (693)
+..+.++++.+||+||||+|+|++|.+++..++...+.... .-+|++|||||+|+.+..
T Consensus 389 nr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ver 468 (673)
T KOG0333|consen 389 NRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVER 468 (673)
T ss_pred HHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHH
Confidence 99999999999999999999999999999999987543221 127999999999999988
Q ss_pred hhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceE
Q psy1604 400 KGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYI 479 (693)
Q Consensus 400 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~ 479 (693)
++..+ + .+++
T Consensus 469 lar~y---------------------------------------------------------------------l-r~pv 478 (673)
T KOG0333|consen 469 LARSY---------------------------------------------------------------------L-RRPV 478 (673)
T ss_pred HHHHH---------------------------------------------------------------------h-hCCe
Confidence 88777 3 5777
Q ss_pred EEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHH
Q psy1604 480 FIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQ 559 (693)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~ 559 (693)
.+..+..+...+-+.|.+..+....|...|.++|..+...++|||+|+++.|+.|++.|.+.++.+..|||+-++++|+.
T Consensus 479 ~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 479 VVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 88889999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHH
Q psy1604 560 AIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILE 639 (693)
Q Consensus 560 ~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~ 639 (693)
++..|++|..+||||||+++||||||+|.+|||||+++++.+|+||||||||+|+.|.+++|+++.++. ...+|.+.|.
T Consensus 559 aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~-v~ydLkq~l~ 637 (673)
T KOG0333|consen 559 ALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA-VFYDLKQALR 637 (673)
T ss_pred HHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhH-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999977554 4455655555
Q ss_pred -HcCCCchhHHhccCC
Q psy1604 640 -QAGQPVPEFLKFGGG 654 (693)
Q Consensus 640 -~~~~~vp~~l~~~~~ 654 (693)
......|..|.....
T Consensus 638 es~~s~~P~Ela~h~~ 653 (673)
T KOG0333|consen 638 ESVKSHCPPELANHPD 653 (673)
T ss_pred HhhhccCChhhccChh
Confidence 567788887765543
No 6
>KOG0341|consensus
Probab=100.00 E-value=6.5e-67 Score=512.57 Aligned_cols=400 Identities=40% Similarity=0.607 Sum_probs=370.0
Q ss_pred ccceeeecCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 182 ENVEVKVSGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 182 ~~~~v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
....+.+.|+.+|+|+.+|.++.++..+++.|++.|+.+|||+|.+.+|.+++|+|++..|-||||||++|.+|++-..+
T Consensus 154 k~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~L 233 (610)
T KOG0341|consen 154 KQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFAL 233 (610)
T ss_pred HhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred cCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc------CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH
Q psy1604 262 ESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY------SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL 335 (693)
Q Consensus 262 ~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~------~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L 335 (693)
.+.....-.+..+|..||+||+|+||.|+++.+..|.. .+.++...+.||.+..++...++.+.+|+|+||++|
T Consensus 234 eqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL 313 (610)
T KOG0341|consen 234 EQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRL 313 (610)
T ss_pred HHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchH
Confidence 76544444446788999999999999999999887752 345788899999999999999999999999999999
Q ss_pred HHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHH
Q psy1604 336 KDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDI 415 (693)
Q Consensus 336 ~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~ 415 (693)
.++|.++.+++.-++|+++||||+|.|++|..+++.++.... ..+|+++||||+|..++.++...
T Consensus 314 ~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK----~QRQTLLFSATMP~KIQ~FAkSA----------- 378 (610)
T KOG0341|consen 314 MDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK----GQRQTLLFSATMPKKIQNFAKSA----------- 378 (610)
T ss_pred HHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh----hhhheeeeeccccHHHHHHHHhh-----------
Confidence 999999999999999999999999999999999999998754 47899999999999998887655
Q ss_pred HhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeE
Q psy1604 416 LDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQ 495 (693)
Q Consensus 416 l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~ 495 (693)
+ -.++.++++..+.++.++.|
T Consensus 379 ----------------------------------------------------------L-VKPvtvNVGRAGAAsldViQ 399 (610)
T KOG0341|consen 379 ----------------------------------------------------------L-VKPVTVNVGRAGAASLDVIQ 399 (610)
T ss_pred ----------------------------------------------------------c-ccceEEecccccccchhHHH
Confidence 2 36788899999999999999
Q ss_pred EEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q psy1604 496 TILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVAT 575 (693)
Q Consensus 496 ~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT 575 (693)
.+.++..+.|+..|++.|+. ...++||||..+.+++.+.++|--.|+.+..+||+.+|++|...++.|+.|+.+|||||
T Consensus 400 evEyVkqEaKiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVAT 478 (610)
T KOG0341|consen 400 EVEYVKQEAKIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVAT 478 (610)
T ss_pred HHHHHHhhhhhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEe
Confidence 99999999999999999885 44579999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhccCCC
Q psy1604 576 AVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKFGGGG 655 (693)
Q Consensus 576 ~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~ 655 (693)
|+++.|+|+|++.||||||+|..+++|+||+||+||.|++|.+.+|++...+...+-+|..+|.+++|++|++|++++..
T Consensus 479 DVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~ 558 (610)
T KOG0341|consen 479 DVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGP 558 (610)
T ss_pred cchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q psy1604 656 G 656 (693)
Q Consensus 656 ~ 656 (693)
.
T Consensus 559 ~ 559 (610)
T KOG0341|consen 559 M 559 (610)
T ss_pred c
Confidence 3
No 7
>KOG0336|consensus
Probab=100.00 E-value=7.4e-65 Score=501.33 Aligned_cols=386 Identities=41% Similarity=0.644 Sum_probs=343.7
Q ss_pred CCCCCCCccccC-CCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccC
Q psy1604 192 NPPRPIESFESA-GLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTG 270 (693)
Q Consensus 192 ~~~~~~~~f~~~-~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~ 270 (693)
..|.|..+|++. .-.+++++++++.||.+|+|+|.++||.+++|.|++..|+||+|||++|++|-+-++..++....
T Consensus 213 pIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~-- 290 (629)
T KOG0336|consen 213 PIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE-- 290 (629)
T ss_pred cCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhh--
Confidence 357888889775 77899999999999999999999999999999999999999999999999999988877654321
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCcee
Q psy1604 271 YCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVR 350 (693)
Q Consensus 271 ~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 350 (693)
...++.+|++.|||+|+.|+.-++.++.. .+++..++||+.+..++...++.+.+|+++||++|.++.-.+.+++.++.
T Consensus 291 qr~~p~~lvl~ptreLalqie~e~~kysy-ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siT 369 (629)
T KOG0336|consen 291 QRNGPGVLVLTPTRELALQIEGEVKKYSY-NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASIT 369 (629)
T ss_pred ccCCCceEEEeccHHHHHHHHhHHhHhhh-cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeE
Confidence 25678999999999999999999998874 46788899999999999999999999999999999999999999999999
Q ss_pred EEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEE
Q psy1604 351 FVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVV 430 (693)
Q Consensus 351 ~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 430 (693)
||||||||+|+|++|.+++++|+...+ +++|++|.|||+|..++.++..+
T Consensus 370 YlVlDEADrMLDMgFEpqIrkilldiR----PDRqtvmTSATWP~~VrrLa~sY-------------------------- 419 (629)
T KOG0336|consen 370 YLVLDEADRMLDMGFEPQIRKILLDIR----PDRQTVMTSATWPEGVRRLAQSY-------------------------- 419 (629)
T ss_pred EEEecchhhhhcccccHHHHHHhhhcC----CcceeeeecccCchHHHHHHHHh--------------------------
Confidence 999999999999999999999986643 69999999999999999998877
Q ss_pred echhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeeccc-ccccceeEEEEEccchhHHHHH
Q psy1604 431 LDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIG-GASTDVVQTILEVPKQQKKKKL 509 (693)
Q Consensus 431 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~L 509 (693)
+ ++++.+.++... .+...+.|.++...+.+|+..+
T Consensus 420 -------------------------------------------~-Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~ 455 (629)
T KOG0336|consen 420 -------------------------------------------L-KEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIV 455 (629)
T ss_pred -------------------------------------------h-hCceEEEecccceeeeeeeeeeEEecccHHHHHHH
Confidence 2 222333333322 3445567777666677888777
Q ss_pred HHHHhc-cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCC
Q psy1604 510 LELLRE-KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIR 588 (693)
Q Consensus 510 ~~~l~~-~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~ 588 (693)
..+++. ....|+||||.++..|+.|..-|.-.|+....+||+..|.+|+..++.|++|+++|||||++++||||+++++
T Consensus 456 ~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiT 535 (629)
T KOG0336|consen 456 QFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDIT 535 (629)
T ss_pred HHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcc
Confidence 777766 5778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhccCCC
Q psy1604 589 HVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKFGGGG 655 (693)
Q Consensus 589 ~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~ 655 (693)
||+|||+|.+++.|+||+||+||+|+.|.++.|++ ..|...+..|+++|..+.|+||+.|-.||..
T Consensus 536 HV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt-~~D~~~a~eLI~ILe~aeQevPdeL~~mAer 601 (629)
T KOG0336|consen 536 HVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLT-RNDWSMAEELIQILERAEQEVPDELVRMAER 601 (629)
T ss_pred eeeccCCCccHHHHHHHhcccccCCCCcceEEEEe-hhhHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence 99999999999999999999999999999999998 5689999999999999999999999988853
No 8
>KOG0339|consensus
Probab=100.00 E-value=3.4e-63 Score=501.51 Aligned_cols=395 Identities=42% Similarity=0.656 Sum_probs=367.4
Q ss_pred CccceeeecCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 181 WENVEVKVSGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 181 ~~~~~v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
+..+.+.+.+..+|+|+++|++.++++.|+..+++..|.+|||+|.+++|..+++++++-.|.||||||.+|+.|++-++
T Consensus 206 r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~hi 285 (731)
T KOG0339|consen 206 RLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHI 285 (731)
T ss_pred HhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHh
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHh
Q psy1604 261 LESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILD 340 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~ 340 (693)
..++.- ....+|..||+||||+|+.|++.++++|++..+++++++|||.+..++.+.+..++.|+||||+||++++.
T Consensus 286 mdq~eL---~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vk 362 (731)
T KOG0339|consen 286 MDQPEL---KPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVK 362 (731)
T ss_pred cchhhh---cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHH
Confidence 877532 11568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhcc
Q psy1604 341 RGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGR 420 (693)
Q Consensus 341 ~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 420 (693)
-+..++.++++||||||++|++++|..+++.|..+.. +++|+|+||||++..+..++..+
T Consensus 363 mKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir----pdrQtllFsaTf~~kIe~lard~---------------- 422 (731)
T KOG0339|consen 363 MKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR----PDRQTLLFSATFKKKIEKLARDI---------------- 422 (731)
T ss_pred hhcccceeeeEEEEechhhhhccccHHHHHHHHhhcC----CcceEEEeeccchHHHHHHHHHH----------------
Confidence 9999999999999999999999999999999998854 69999999999999988887777
Q ss_pred ccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEc
Q psy1604 421 ISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEV 500 (693)
Q Consensus 421 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (693)
| .+++.+..+.++..+.++.|.+..+
T Consensus 423 -----------------------------------------------------L-~dpVrvVqg~vgean~dITQ~V~V~ 448 (731)
T KOG0339|consen 423 -----------------------------------------------------L-SDPVRVVQGEVGEANEDITQTVSVC 448 (731)
T ss_pred -----------------------------------------------------h-cCCeeEEEeehhccccchhheeeec
Confidence 2 4677778888999999999999877
Q ss_pred cc-hhHHHHHHHHHhc-cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcc
Q psy1604 501 PK-QQKKKKLLELLRE-KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVA 578 (693)
Q Consensus 501 ~~-~~k~~~L~~~l~~-~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~ 578 (693)
+. ..|+..|+..|-. ...+++|||+..+..++.++..|+..++.+..+||+|.|.+|.+++..|+.++..|||+||++
T Consensus 449 ~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDva 528 (731)
T KOG0339|consen 449 PSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVA 528 (731)
T ss_pred cCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHh
Confidence 65 5677888776665 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhccC
Q psy1604 579 SRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKFGG 653 (693)
Q Consensus 579 ~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~ 653 (693)
++|+||+++..|||||+-++++.|.||+||+||.|.+|.++++++ +.|..++-.|++.|..++|.||+.|..++
T Consensus 529 argldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvT-eKDa~fAG~LVnnLe~agQnVP~~l~dla 602 (731)
T KOG0339|consen 529 ARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVT-EKDAEFAGHLVNNLEGAGQNVPDELMDLA 602 (731)
T ss_pred hcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEec-hhhHHHhhHHHHHHhhccccCChHHHHHH
Confidence 999999999999999999999999999999999999999999999 45778999999999999999999999887
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-63 Score=543.13 Aligned_cols=371 Identities=43% Similarity=0.652 Sum_probs=332.4
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV 277 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v 277 (693)
.+|.+++|++.++++|.+.||..|||+|..+||.++.|+|++++|+||||||++|++|+++.+..... .....+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~------~~~~~a 102 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE------RKYVSA 102 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc------cCCCce
Confidence 67999999999999999999999999999999999999999999999999999999999999764311 111119
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCC-CeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEcc
Q psy1604 278 IICAPTRELVMQIHEVACKYAYSS-VLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 356 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 356 (693)
||++||||||.|+++.+.++.... .+++..++||.+...+...+..+++|+|+||++|++++.++.+.++++.++|+||
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDE 182 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDE 182 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEecc
Confidence 999999999999999999999888 7999999999999999999988999999999999999999999999999999999
Q ss_pred chhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 357 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
||+|++++|..++..|+.... .++|+++||||+|..+..++..++
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p----~~~qtllfSAT~~~~i~~l~~~~l------------------------------- 227 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALP----PDRQTLLFSATMPDDIRELARRYL------------------------------- 227 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCC----cccEEEEEecCCCHHHHHHHHHHc-------------------------------
Confidence 999999999999999998754 289999999999998888776661
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeeccc--ccccceeEEEEEccchh-HHHHHHHHH
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIG--GASTDVVQTILEVPKQQ-KKKKLLELL 513 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-k~~~L~~~l 513 (693)
.++..+.+.... .....+.|.+..+.... |...|..++
T Consensus 228 ---------------------------------------~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 228 ---------------------------------------NDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred ---------------------------------------cCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 133333333222 36778888888888766 999999999
Q ss_pred hccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEc
Q psy1604 514 REKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINY 593 (693)
Q Consensus 514 ~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~ 593 (693)
......++||||+++..++.++..|...|+.+..+||+|+|.+|.++++.|++|+.+||||||+++||||||++++||||
T Consensus 269 ~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Viny 348 (513)
T COG0513 269 KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINY 348 (513)
T ss_pred hcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEc
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHc---CCCchhH
Q psy1604 594 DLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQA---GQPVPEF 648 (693)
Q Consensus 594 d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~---~~~vp~~ 648 (693)
|+|.+++.|+||+|||||+|+.|.+++|+++..+...+..+.+.+... ...+|.+
T Consensus 349 D~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~ 406 (513)
T COG0513 349 DLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLD 406 (513)
T ss_pred cCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcc
Confidence 999999999999999999999999999999865788888888887665 3455554
No 10
>KOG0328|consensus
Probab=100.00 E-value=2.4e-63 Score=469.23 Aligned_cols=380 Identities=31% Similarity=0.483 Sum_probs=342.5
Q ss_pred cCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcc
Q psy1604 189 SGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELV 268 (693)
Q Consensus 189 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~ 268 (693)
..+....++.+|++++|.+++++.+...||++|+.+|+.|++.+++|+|++++|+.|+|||.+|.+.+++.+.-.
T Consensus 18 eTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~----- 92 (400)
T KOG0328|consen 18 ETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS----- 92 (400)
T ss_pred eeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----
Confidence 344566778999999999999999999999999999999999999999999999999999999999888776443
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCc
Q psy1604 269 TGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLAS 348 (693)
Q Consensus 269 ~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~ 348 (693)
.+..++|||+|||||+.|+.+.+..++...++.+..+.||.+..+..+.+..+.+++.+||++++++++++.+....
T Consensus 93 ---~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~ 169 (400)
T KOG0328|consen 93 ---VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRA 169 (400)
T ss_pred ---cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccc
Confidence 23357999999999999999999999999999999999999988888888899999999999999999999999999
Q ss_pred eeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeE
Q psy1604 349 VRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRF 428 (693)
Q Consensus 349 ~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 428 (693)
++++|+||||.|++.+|..++..++..++ ++.|++++|||+|.++.....+|+
T Consensus 170 vkmlVLDEaDemL~kgfk~Qiydiyr~lp----~~~Qvv~~SATlp~eilemt~kfm----------------------- 222 (400)
T KOG0328|consen 170 VKMLVLDEADEMLNKGFKEQIYDIYRYLP----PGAQVVLVSATLPHEILEMTEKFM----------------------- 222 (400)
T ss_pred eeEEEeccHHHHHHhhHHHHHHHHHHhCC----CCceEEEEeccCcHHHHHHHHHhc-----------------------
Confidence 99999999999999999999999998743 588999999999999887766651
Q ss_pred EEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchh-HHH
Q psy1604 429 VVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQ-KKK 507 (693)
Q Consensus 429 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~ 507 (693)
.+++.+.+.....+...+.|.+..+..++ |.+
T Consensus 223 -----------------------------------------------tdpvrilvkrdeltlEgIKqf~v~ve~EewKfd 255 (400)
T KOG0328|consen 223 -----------------------------------------------TDPVRILVKRDELTLEGIKQFFVAVEKEEWKFD 255 (400)
T ss_pred -----------------------------------------------CCceeEEEecCCCchhhhhhheeeechhhhhHh
Confidence 23444444444445555667777777766 999
Q ss_pred HHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCC
Q psy1604 508 KLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGI 587 (693)
Q Consensus 508 ~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v 587 (693)
.|.++.....-.+++|||++++.++.|.+.|++.++.+..+||+|.+++|++++++|++|+.+|||+||+.+||||+|.|
T Consensus 256 tLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qV 335 (400)
T KOG0328|consen 256 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQV 335 (400)
T ss_pred HHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCccee
Confidence 99999988888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhc
Q psy1604 588 RHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKF 651 (693)
Q Consensus 588 ~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~ 651 (693)
++|||||+|.+.+.|+||+||.||+|++|.++-|+. ++|-+.++++.+.+.-+..+.|-.+.+
T Consensus 336 slviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk-~~d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 336 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK-SDDLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred EEEEecCCCccHHHHhhhhccccccCCcceEEEEec-HHHHHHHHHHHHHHhhhcccccchhhh
Confidence 999999999999999999999999999999999998 668889999999999988888876543
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.4e-61 Score=537.27 Aligned_cols=393 Identities=36% Similarity=0.564 Sum_probs=341.1
Q ss_pred eeeecCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCC
Q psy1604 185 EVKVSGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESP 264 (693)
Q Consensus 185 ~v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~ 264 (693)
.+.+.|...|.|+.+|++++|++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++.++....
T Consensus 108 ~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~ 187 (518)
T PLN00206 108 EIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIR 187 (518)
T ss_pred CCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhc
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999886532
Q ss_pred CCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCc
Q psy1604 265 GELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRI 344 (693)
Q Consensus 265 ~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~ 344 (693)
..... ...++++|||+|||+|+.|+.+.++.+.....+++..++||.....+...+..+++|+|+||++|.+++.+..+
T Consensus 188 ~~~~~-~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~ 266 (518)
T PLN00206 188 SGHPS-EQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDI 266 (518)
T ss_pred ccccc-ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCc
Confidence 11100 13567999999999999999999999988888889999999888887778888999999999999999998888
Q ss_pred CCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhcccccc
Q psy1604 345 SLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLA 424 (693)
Q Consensus 345 ~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 424 (693)
.++++++|||||||+|++++|...+..++.... .+|+++||||++..+..++..+.
T Consensus 267 ~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-----~~q~l~~SATl~~~v~~l~~~~~------------------- 322 (518)
T PLN00206 267 ELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-----QPQVLLFSATVSPEVEKFASSLA------------------- 322 (518)
T ss_pred cchheeEEEeecHHHHhhcchHHHHHHHHHhCC-----CCcEEEEEeeCCHHHHHHHHHhC-------------------
Confidence 999999999999999999999999998887642 67999999999988766554431
Q ss_pred ceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchh
Q psy1604 425 SVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQ 504 (693)
Q Consensus 425 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (693)
.++..+..+.....+..+.+....+....
T Consensus 323 ---------------------------------------------------~~~~~i~~~~~~~~~~~v~q~~~~~~~~~ 351 (518)
T PLN00206 323 ---------------------------------------------------KDIILISIGNPNRPNKAVKQLAIWVETKQ 351 (518)
T ss_pred ---------------------------------------------------CCCEEEEeCCCCCCCcceeEEEEeccchh
Confidence 12222333333334445566666666777
Q ss_pred HHHHHHHHHhcc--CCCcEEEEecChHhHHHHHHHHhh-CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCccccc
Q psy1604 505 KKKKLLELLREK--DEDGVIVFVSTIRNADFIACYLCE-TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRG 581 (693)
Q Consensus 505 k~~~L~~~l~~~--~~~kvLVF~~s~~~a~~l~~~L~~-~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~G 581 (693)
|...|.+++... ...++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 352 k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rG 431 (518)
T PLN00206 352 KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRG 431 (518)
T ss_pred HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhcc
Confidence 788888888753 346899999999999999999975 68999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhccCC
Q psy1604 582 LDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKFGGG 654 (693)
Q Consensus 582 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~ 654 (693)
||+|++++||+||+|.++.+|+||+|||||.|+.|.+++|+++ ++.....++.+.|+..++.+|++|..+-.
T Consensus 432 iDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~-~~~~~~~~l~~~l~~~~~~vp~~l~~~~~ 503 (518)
T PLN00206 432 VDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNE-EDRNLFPELVALLKSSGAAIPRELANSRY 503 (518)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEch-hHHHHHHHHHHHHHHcCCCCCHHHHhChh
Confidence 9999999999999999999999999999999999999999985 46788899999999999999999998763
No 12
>KOG0338|consensus
Probab=100.00 E-value=3.7e-62 Score=494.83 Aligned_cols=361 Identities=37% Similarity=0.589 Sum_probs=318.8
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCe
Q psy1604 197 IESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPE 276 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~ 276 (693)
..+|.+++|+..+++++..+||..|||+|..+||..+-|+|+..||.||||||.+|++|+|.+|+-.|.. ....+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TR 254 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-----VAATR 254 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-----Cccee
Confidence 4589999999999999999999999999999999999999999999999999999999999999988765 34569
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC-CcCCCceeEEEEc
Q psy1604 277 VIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG-RISLASVRFVVLD 355 (693)
Q Consensus 277 vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~lVlD 355 (693)
||||+|||+|+.|++...++++....+.++++.||-+...+...++..+||+|+|||+|.+++.+. .++++++.++|+|
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999875 4789999999999
Q ss_pred cchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhh
Q psy1604 356 EADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 435 (693)
Q Consensus 356 Eah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~ 435 (693)
|||+|++.+|..++..|+..+. .++|+++||||+...+..++..-
T Consensus 335 EADRMLeegFademnEii~lcp----k~RQTmLFSATMteeVkdL~slS------------------------------- 379 (691)
T KOG0338|consen 335 EADRMLEEGFADEMNEIIRLCP----KNRQTMLFSATMTEEVKDLASLS------------------------------- 379 (691)
T ss_pred hHHHHHHHHHHHHHHHHHHhcc----ccccceeehhhhHHHHHHHHHhh-------------------------------
Confidence 9999999999999999998754 58999999999999888775433
Q ss_pred hhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEcc---chhHHHHHHHH
Q psy1604 436 RMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVP---KQQKKKKLLEL 512 (693)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~k~~~L~~~ 512 (693)
+ ..++.+.+.......+.+.|.++.+. ...+-..|..+
T Consensus 380 --------------------------------------L-~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l 420 (691)
T KOG0338|consen 380 --------------------------------------L-NKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL 420 (691)
T ss_pred --------------------------------------c-CCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH
Confidence 1 23344444444444444555444333 22344556666
Q ss_pred HhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEE
Q psy1604 513 LREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVIN 592 (693)
Q Consensus 513 l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~ 592 (693)
+...-..+++||+.++..|..+.-.|--.|+++.-+||.++|.+|.+.++.|++++++||||||+++|||||++|.+|||
T Consensus 421 ~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN 500 (691)
T KOG0338|consen 421 ITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN 500 (691)
T ss_pred HHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe
Confidence 66666888999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHH
Q psy1604 593 YDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRI 637 (693)
Q Consensus 593 ~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~ 637 (693)
|++|.+...|+||+||++|+|+.|.+++|+. +.|.++++.+++.
T Consensus 501 y~mP~t~e~Y~HRVGRTARAGRaGrsVtlvg-E~dRkllK~iik~ 544 (691)
T KOG0338|consen 501 YAMPKTIEHYLHRVGRTARAGRAGRSVTLVG-ESDRKLLKEIIKS 544 (691)
T ss_pred ccCchhHHHHHHHhhhhhhcccCcceEEEec-cccHHHHHHHHhh
Confidence 9999999999999999999999999999998 4578888877766
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.1e-59 Score=511.71 Aligned_cols=366 Identities=40% Similarity=0.621 Sum_probs=312.7
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEE
Q psy1604 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVI 278 (693)
Q Consensus 199 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vL 278 (693)
+|++++|++.+++.|.+.||..|||+|.++|+.+++++|++++||||||||++|++|+++.+....... .....+++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~--~~~~~~~aL 79 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA--KGRRPVRAL 79 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc--ccCCCceEE
Confidence 588999999999999999999999999999999999999999999999999999999999987643211 002345899
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccch
Q psy1604 279 ICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 358 (693)
Q Consensus 279 il~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah 358 (693)
||+||++|+.|+.+.+..+.....+++..++|+.+...+...+...++|+|+||++|++++....+.++++++|||||||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah 159 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH
Confidence 99999999999999999998888899999999998888777788889999999999999998888889999999999999
Q ss_pred hhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhh
Q psy1604 359 RMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRML 438 (693)
Q Consensus 359 ~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~ 438 (693)
+|++++|...+..++.... ..+|+++||||++..+..+...++
T Consensus 160 ~ll~~~~~~~i~~il~~l~----~~~q~l~~SAT~~~~~~~l~~~~~--------------------------------- 202 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLP----AKRQNLLFSATFSDDIKALAEKLL--------------------------------- 202 (456)
T ss_pred HHhccccHHHHHHHHHhCC----ccCeEEEEeCCCcHHHHHHHHHHc---------------------------------
Confidence 9999999999999887643 367999999999987766554431
Q ss_pred hcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCC
Q psy1604 439 DMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDE 518 (693)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~ 518 (693)
.++..+.+.........+.+.+..+....|...+..++.....
T Consensus 203 -------------------------------------~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~ 245 (456)
T PRK10590 203 -------------------------------------HNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNW 245 (456)
T ss_pred -------------------------------------CCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCC
Confidence 0111111111112223344555556666777777788877777
Q ss_pred CcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCC
Q psy1604 519 DGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQE 598 (693)
Q Consensus 519 ~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s 598 (693)
.++||||+++..++.+++.|...++.+..+||+|++.+|.++++.|++|+++|||||+++++|||||++++||+||+|.+
T Consensus 246 ~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~ 325 (456)
T PRK10590 246 QQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNV 325 (456)
T ss_pred CcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHc
Q psy1604 599 IDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQA 641 (693)
Q Consensus 599 ~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~ 641 (693)
+.+|+||+||+||.|..|.+++|++.+ +...++.+.+.+...
T Consensus 326 ~~~yvqR~GRaGR~g~~G~ai~l~~~~-d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 326 PEDYVHRIGRTGRAAATGEALSLVCVD-EHKLLRDIEKLLKKE 367 (456)
T ss_pred HHHhhhhccccccCCCCeeEEEEecHH-HHHHHHHHHHHhcCC
Confidence 999999999999999999999999854 666777777776544
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5e-59 Score=507.85 Aligned_cols=371 Identities=35% Similarity=0.534 Sum_probs=313.4
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCe
Q psy1604 197 IESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPE 276 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~ 276 (693)
..+|++++|++.+++.|...||..|+|+|.++||.+++|+|++++||||||||++|++|+++.++..+.... ....+++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~-~~~~~~~ 85 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPED-RKVNQPR 85 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccc-cccCCce
Confidence 468999999999999999999999999999999999999999999999999999999999999986543211 0134578
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEcc
Q psy1604 277 VIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 356 (693)
Q Consensus 277 vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 356 (693)
+|||+||++||.|+++.+..+....++++..++|+.....+...+..+++|+|+||++|.+++.++.+.++++++|||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999999998889999999999988888788888899999999999999998888999999999999
Q ss_pred chhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 357 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
||+|++.+|..++..++... +....++.+++|||++..+..+....+
T Consensus 166 ad~l~~~~f~~~i~~i~~~~--~~~~~~~~~l~SAT~~~~~~~~~~~~~------------------------------- 212 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRM--PPANQRLNMLFSATLSYRVRELAFEHM------------------------------- 212 (423)
T ss_pred HHHHhhcccHHHHHHHHHhC--CCccceeEEEEeccCCHHHHHHHHHHC-------------------------------
Confidence 99999999999999888764 333467889999999887665433220
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK 516 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 516 (693)
.++..+.+.........+.+.+.......|...|..++...
T Consensus 213 ---------------------------------------~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 253 (423)
T PRK04837 213 ---------------------------------------NNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE 253 (423)
T ss_pred ---------------------------------------CCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhc
Confidence 00011111111111223334444555677888888888877
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLP 596 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p 596 (693)
...++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||||++++||+||+|
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P 333 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLP 333 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHc
Q psy1604 597 QEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQA 641 (693)
Q Consensus 597 ~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~ 641 (693)
.+...|+||+||+||.|+.|.+++|+++. +......+.+.+...
T Consensus 334 ~s~~~yiqR~GR~gR~G~~G~ai~~~~~~-~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 334 DDCEDYVHRIGRTGRAGASGHSISLACEE-YALNLPAIETYIGHS 377 (423)
T ss_pred CchhheEeccccccCCCCCeeEEEEeCHH-HHHHHHHHHHHhCCC
Confidence 99999999999999999999999999854 445556665555443
No 15
>KOG0342|consensus
Probab=100.00 E-value=1.7e-59 Score=476.05 Aligned_cols=356 Identities=33% Similarity=0.512 Sum_probs=317.5
Q ss_pred CCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCC
Q psy1604 194 PRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCA 273 (693)
Q Consensus 194 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~ 273 (693)
......|+...|++..+++++.+||..+|++|...|+.++.|+|+++.|.||||||+||++|+++.++..+... ..
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~----r~ 153 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP----RN 153 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC----CC
Confidence 33455688899999999999999999999999999999999999999999999999999999999998876543 35
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCC-CeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC-cCCCceeE
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSS-VLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR-ISLASVRF 351 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~-~~l~~~~~ 351 (693)
+..+||+||||+||.|++.+++++.... .+.+..+.||.......+.+.++++|+|+|||+|++++++.. +.+.++++
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~ 233 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKC 233 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccce
Confidence 6689999999999999999999998777 889999999999888888888899999999999999998854 45667789
Q ss_pred EEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEe
Q psy1604 352 VVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVL 431 (693)
Q Consensus 352 lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 431 (693)
+|+||||++++++|..++..|+.... ..+|.++||||.+..++.++.-.
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~lp----k~rqt~LFSAT~~~kV~~l~~~~--------------------------- 282 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKILP----KQRQTLLFSATQPSKVKDLARGA--------------------------- 282 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhcc----ccceeeEeeCCCcHHHHHHHHHh---------------------------
Confidence 99999999999999999999998754 58999999999999998876554
Q ss_pred chhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcce--EEEEeecccccccceeEEEEEccchhHHHHH
Q psy1604 432 DEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNY--IFIAVGIIGGASTDVVQTILEVPKQQKKKKL 509 (693)
Q Consensus 432 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L 509 (693)
+..+. +.+..+....+...+.|.+...+...++..+
T Consensus 283 ------------------------------------------L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll 320 (543)
T KOG0342|consen 283 ------------------------------------------LKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL 320 (543)
T ss_pred ------------------------------------------hcCCceEeecCCCCCcchhhcccceEEeccccchHHHH
Confidence 22233 3333333445566677878778888888999
Q ss_pred HHHHhccCC-CcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCC
Q psy1604 510 LELLREKDE-DGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIR 588 (693)
Q Consensus 510 ~~~l~~~~~-~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~ 588 (693)
..+|+.+.. .++||||+|...+.++++.|....+++..+||+++|..|..++.+|++.+.-||||||+++||+|+|+|+
T Consensus 321 ~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~ 400 (543)
T KOG0342|consen 321 YTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVD 400 (543)
T ss_pred HHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCce
Confidence 999998665 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCC
Q psy1604 589 HVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQ 626 (693)
Q Consensus 589 ~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~ 626 (693)
+||+||+|.++.+|+||+|||||.|..|.+++|+.|.+
T Consensus 401 ~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 401 WVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred EEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhH
Confidence 99999999999999999999999999999999999764
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.5e-58 Score=510.20 Aligned_cols=370 Identities=36% Similarity=0.546 Sum_probs=312.1
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV 277 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v 277 (693)
.+|++++|++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++++++..+.... .....+++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~-~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALAD-RKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccc-cccCCceE
Confidence 36999999999999999999999999999999999999999999999999999999999999876432110 01235789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC-CcCCCceeEEEEcc
Q psy1604 278 IICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG-RISLASVRFVVLDE 356 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~lVlDE 356 (693)
|||+||++|+.|+++.+.++....++++..++|+.....+...+..+++|+|+||++|++++.+. .+.+..+++|||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999988889999999999988888888888999999999999998765 46788999999999
Q ss_pred chhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 357 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
||+|++++|...+..++... +.....|+++||||++..+..+...++.
T Consensus 168 Ah~lld~gf~~~i~~il~~l--p~~~~~q~ll~SATl~~~v~~l~~~~l~------------------------------ 215 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRM--PERGTRQTLLFSATLSHRVLELAYEHMN------------------------------ 215 (572)
T ss_pred HHHHhhcchHHHHHHHHHhc--ccccCceEEEEeCCccHHHHHHHHHHhc------------------------------
Confidence 99999999999999988764 3334689999999998876655433310
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK 516 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 516 (693)
....+...........+.+.+.......|...|..++...
T Consensus 216 ----------------------------------------~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~ 255 (572)
T PRK04537 216 ----------------------------------------EPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRS 255 (572)
T ss_pred ----------------------------------------CCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcc
Confidence 0000000001111223445555556677888888998887
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLP 596 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p 596 (693)
...++||||+++..++.+++.|...++.+..+||+|++.+|+.+++.|++|+++|||||+++++|||||++++||+||+|
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P 335 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLP 335 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHc
Q psy1604 597 QEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQA 641 (693)
Q Consensus 597 ~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~ 641 (693)
.+...|+||+||+||.|+.|.|++|+.+. +...++++.+.+...
T Consensus 336 ~s~~~yvqRiGRaGR~G~~G~ai~~~~~~-~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 336 FDAEDYVHRIGRTARLGEEGDAISFACER-YAMSLPDIEAYIEQK 379 (572)
T ss_pred CCHHHHhhhhcccccCCCCceEEEEecHH-HHHHHHHHHHHHcCC
Confidence 99999999999999999999999999853 555667776665443
No 17
>KOG0340|consensus
Probab=100.00 E-value=1.5e-58 Score=450.49 Aligned_cols=363 Identities=36% Similarity=0.506 Sum_probs=309.6
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCe
Q psy1604 197 IESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPE 276 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~ 276 (693)
..+|..+||++.+.+.++.+|+++|||+|..+||.|+.|+|++.+|.||||||++|.+|+|++|.+.+.+ ..
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~g--------iF 77 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYG--------IF 77 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCc--------ce
Confidence 4679999999999999999999999999999999999999999999999999999999999999888643 47
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC----cCCCceeEE
Q psy1604 277 VIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR----ISLASVRFV 352 (693)
Q Consensus 277 vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~----~~l~~~~~l 352 (693)
+||+.|||+|+.|+.+.|..+++..++++.+++||.....+...+.+.+|++|+|||++.+++..+. ..+++++++
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFL 157 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeE
Confidence 8999999999999999999999999999999999999998888999999999999999999987652 357889999
Q ss_pred EEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEec
Q psy1604 353 VLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLD 432 (693)
Q Consensus 353 VlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d 432 (693)
|+||||++++..|...+..++...+ ..+|.++||||+.+.++.+...-
T Consensus 158 VlDEADrvL~~~f~d~L~~i~e~lP----~~RQtLlfSATitd~i~ql~~~~---------------------------- 205 (442)
T KOG0340|consen 158 VLDEADRVLAGCFPDILEGIEECLP----KPRQTLLFSATITDTIKQLFGCP---------------------------- 205 (442)
T ss_pred EecchhhhhccchhhHHhhhhccCC----CccceEEEEeehhhHHHHhhcCC----------------------------
Confidence 9999999999999999999887643 35899999999988766542211
Q ss_pred hhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhc-ceEEEEeecccccccceeEEEEEccchhHHHHHHH
Q psy1604 433 EADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQK-NYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLE 511 (693)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ 511 (693)
... ..+++...........+.|.++.++...|...|..
T Consensus 206 -----------------------------------------i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~ 244 (442)
T KOG0340|consen 206 -----------------------------------------ITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVH 244 (442)
T ss_pred -----------------------------------------cccccceEEeccCCCCchhhhhhheeecchhhhHHHHHH
Confidence 000 01111111111222233444555666777777777
Q ss_pred HHhc---cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCC
Q psy1604 512 LLRE---KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIR 588 (693)
Q Consensus 512 ~l~~---~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~ 588 (693)
+|+. .....++||+++..+|+.|+..|+...+.+..+|+.|+|.+|...+.+|+++..+||||||+++||+|||.|+
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 7765 3567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHc
Q psy1604 589 HVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQA 641 (693)
Q Consensus 589 ~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~ 641 (693)
+|||||+|++|.+|+||.||++|+|+.|.+++|++ ..|-..+..+.+....+
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt-~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVT-QRDVELLQAIEEEIGKK 376 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEec-hhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999 44555666665555544
No 18
>KOG0334|consensus
Probab=100.00 E-value=1.6e-58 Score=509.18 Aligned_cols=410 Identities=40% Similarity=0.635 Sum_probs=367.7
Q ss_pred eeecCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCC
Q psy1604 186 VKVSGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPG 265 (693)
Q Consensus 186 v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~ 265 (693)
+++.+...|.|+.+|.+.+++..++..++++||.+|+|+|.+|||+|++|+|+|..|.||||||++|+||++.++..++.
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999988877664
Q ss_pred CcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCc-
Q psy1604 266 ELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRI- 344 (693)
Q Consensus 266 ~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~- 344 (693)
.. ...+|.+||++|||+|+.|+++++++|....+++++++||+.....+...+++++.|+||||+++++++-.+..
T Consensus 433 ~~---~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~gr 509 (997)
T KOG0334|consen 433 LE---EGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGR 509 (997)
T ss_pred hh---hCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCc
Confidence 32 25689999999999999999999999999999999999999999999999999999999999999998865443
Q ss_pred --CCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhcccc
Q psy1604 345 --SLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRIS 422 (693)
Q Consensus 345 --~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 422 (693)
++.++.+||+||||+|++++|.+++..|+.+.. +.+|+++||||+|..+..++...
T Consensus 510 vtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr----pdrQtvlfSatfpr~m~~la~~v------------------ 567 (997)
T KOG0334|consen 510 VTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR----PDRQTVLFSATFPRSMEALARKV------------------ 567 (997)
T ss_pred cccccccceeeechhhhhheeccCcccchHHhhcc----hhhhhhhhhhhhhHHHHHHHHHh------------------
Confidence 455566999999999999999999999998863 69999999999998877666555
Q ss_pred ccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEcc-
Q psy1604 423 LASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVP- 501 (693)
Q Consensus 423 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 501 (693)
+. .++.+.++.....+.++.|.+..+.
T Consensus 568 ---------------------------------------------------l~-~Pveiiv~~~svV~k~V~q~v~V~~~ 595 (997)
T KOG0334|consen 568 ---------------------------------------------------LK-KPVEIIVGGRSVVCKEVTQVVRVCAI 595 (997)
T ss_pred ---------------------------------------------------hc-CCeeEEEccceeEeccceEEEEEecC
Confidence 22 4555666667777888899998888
Q ss_pred chhHHHHHHHHHhc-cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccc
Q psy1604 502 KQQKKKKLLELLRE-KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASR 580 (693)
Q Consensus 502 ~~~k~~~L~~~l~~-~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~ 580 (693)
+..|+..|+++|.. ....++||||.....|+.+.+.|.+.++++..+||+.++.+|..++++|+++.+++||||+++++
T Consensus 596 e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvar 675 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVAR 675 (997)
T ss_pred chHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhc
Confidence 88999999999986 56889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhccCCC-----
Q psy1604 581 GLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKFGGGG----- 655 (693)
Q Consensus 581 GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~----- 655 (693)
|||++++.+|||||+|....+|+||.|||||.|++|.|++|+++ ++..+..+|.+.|...++.+|..|+.+...
T Consensus 676 GLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p-~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~~ 754 (997)
T KOG0334|consen 676 GLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITP-DQLKYAGDLCKALELSKQPVPKLLQALSERFKAKQ 754 (997)
T ss_pred ccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeCh-HHhhhHHHHHHHHHhccCCCchHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999998 678899999999999999999998877532
Q ss_pred ---CCCCCCCCCCCCCcCCCC
Q psy1604 656 ---GGYGRGGDAFGARDIRHD 673 (693)
Q Consensus 656 ---~~~~~~~~~~~~~~~~~~ 673 (693)
+.+-.++|+|+|+.++++
T Consensus 755 ~~~~s~~~~~Gg~~G~g~~~~ 775 (997)
T KOG0334|consen 755 KAGGSQVHGGGGFGGKGLKFD 775 (997)
T ss_pred hcccccccccCcccCCccccc
Confidence 222223336777777774
No 19
>KOG0345|consensus
Probab=100.00 E-value=8.7e-58 Score=460.16 Aligned_cols=368 Identities=34% Similarity=0.500 Sum_probs=309.9
Q ss_pred ccccC--CCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCe
Q psy1604 199 SFESA--GLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPE 276 (693)
Q Consensus 199 ~f~~~--~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~ 276 (693)
+|+++ +|++.++..+...||..+||+|..+||.+++++|+++.++||||||+||++|++..+.+...... ....-
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~---~~~vg 81 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP---PGQVG 81 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC---cccee
Confidence 34454 36699999999999999999999999999999999999999999999999999999966553321 11346
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcC-CCeeEEEEeCCCChHHHHHHH-hcCCcEEEechhhHHHHHhcCC--cCCCceeEE
Q psy1604 277 VIICAPTRELVMQIHEVACKYAYS-SVLKICLHYGGASSMHFNRQL-EKGCNILVATMGRLKDILDRGR--ISLASVRFV 352 (693)
Q Consensus 277 vLil~Ptr~La~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~~-~~~~~IlV~Tp~~L~~~l~~~~--~~l~~~~~l 352 (693)
+|||+|||||+.|+.+.+..|... .++++.+++||....+....+ .++++|+|+|||+|.+++++.. +++.++++|
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~L 161 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEIL 161 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceE
Confidence 899999999999999999988766 778999999998877666555 4588999999999999998744 556699999
Q ss_pred EEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEec
Q psy1604 353 VLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLD 432 (693)
Q Consensus 353 VlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d 432 (693)
|+||||++++++|...+..|+..++ ..+++=+||||...++.++..-.
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LP----KQRRTGLFSATq~~~v~dL~raG---------------------------- 209 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLP----KQRRTGLFSATQTQEVEDLARAG---------------------------- 209 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhcc----cccccccccchhhHHHHHHHHhh----------------------------
Confidence 9999999999999999999998754 47788999999888776654332
Q ss_pred hhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccc--cccceeEEEEEccchhHHHHHH
Q psy1604 433 EADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGG--ASTDVVQTILEVPKQQKKKKLL 510 (693)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~L~ 510 (693)
+ .+++.+.+..... +...+...+..+....|...|+
T Consensus 210 -----------------------------------------L-RNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv 247 (567)
T KOG0345|consen 210 -----------------------------------------L-RNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLV 247 (567)
T ss_pred -----------------------------------------c-cCceeeeecccccccCchhhcceeeEecHHHHHHHHH
Confidence 1 2444444444333 3334555666678889999999
Q ss_pred HHHhccCCCcEEEEecChHhHHHHHHHHhhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCC
Q psy1604 511 ELLREKDEDGVIVFVSTIRNADFIACYLCET--EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIR 588 (693)
Q Consensus 511 ~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~ 588 (693)
.+|......++|||++|...+++....|... ...+..+||.|.+..|..++..|++....+|+|||+++||||||+++
T Consensus 248 ~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD 327 (567)
T KOG0345|consen 248 HLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGID 327 (567)
T ss_pred HHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCce
Confidence 9999999999999999999999999988764 67899999999999999999999998889999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhH
Q psy1604 589 HVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEF 648 (693)
Q Consensus 589 ~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~ 648 (693)
+||+||+|.+++.|+||.|||+|.|+.|.+++|+.|.+ ..++++|+......-+.
T Consensus 328 ~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E-----~aYveFl~i~~~v~le~ 382 (567)
T KOG0345|consen 328 LVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPRE-----EAYVEFLRIKGKVELER 382 (567)
T ss_pred EEEecCCCCChhHHHhhcchhhhccCccceEEEecccH-----HHHHHHHHhcCccchhh
Confidence 99999999999999999999999999999999999854 34667777665333333
No 20
>KOG0343|consensus
Probab=100.00 E-value=2.1e-58 Score=471.55 Aligned_cols=364 Identities=32% Similarity=0.515 Sum_probs=320.4
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCC
Q psy1604 196 PIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQP 275 (693)
Q Consensus 196 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~ 275 (693)
.+..|.++.|+...+++|+..+|..||.+|+.+||..+.|+|++.+|.||||||+||++|+|+.|.+..... ..+.
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~----~DGl 142 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP----TDGL 142 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC----CCCc
Confidence 456799999999999999999999999999999999999999999999999999999999999999877654 4566
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC-cCCCceeEEEE
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR-ISLASVRFVVL 354 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~-~~l~~~~~lVl 354 (693)
-+|||+|||+||.|+++.+.+.+....+...+++||......... -.+.+|+|||||+|++++.... ++.+++.+||+
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eR-i~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvL 221 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELER-ISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVL 221 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHh-hhcCCeEEechHHHHHHhhhcCCCCCCcceEEEe
Confidence 799999999999999999999999999999999999886655444 3568999999999999998764 67889999999
Q ss_pred ccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechh
Q psy1604 355 DEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEA 434 (693)
Q Consensus 355 DEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~ 434 (693)
||||+|++++|...+..|+..++ +.+|+++||||....+..++..- +.+
T Consensus 222 DEADR~LDMGFk~tL~~Ii~~lP----~~RQTLLFSATqt~svkdLaRLs------------------L~d--------- 270 (758)
T KOG0343|consen 222 DEADRMLDMGFKKTLNAIIENLP----KKRQTLLFSATQTKSVKDLARLS------------------LKD--------- 270 (758)
T ss_pred ccHHHHHHHhHHHHHHHHHHhCC----hhheeeeeecccchhHHHHHHhh------------------cCC---------
Confidence 99999999999999999998854 58999999999988777665332 111
Q ss_pred hhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHh
Q psy1604 435 DRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLR 514 (693)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~ 514 (693)
..|+-+..........++.|.++.++...|++.|+.+++
T Consensus 271 -----------------------------------------P~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~ 309 (758)
T KOG0343|consen 271 -----------------------------------------PVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIK 309 (758)
T ss_pred -----------------------------------------CcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHH
Confidence 223333333334556667777888888999999999999
Q ss_pred ccCCCcEEEEecChHhHHHHHHHHhhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEE
Q psy1604 515 EKDEDGVIVFVSTIRNADFIACYLCET--EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVIN 592 (693)
Q Consensus 515 ~~~~~kvLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~ 592 (693)
.+...++|||+++..++.++++.++.. |+++..+||.|+|..|.++++.|-..+..||+|||+++||||+|.|++||+
T Consensus 310 shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ 389 (758)
T KOG0343|consen 310 SHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ 389 (758)
T ss_pred hccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE
Confidence 999999999999999999999999875 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHH
Q psy1604 593 YDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVR 636 (693)
Q Consensus 593 ~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~ 636 (693)
+|.|.+.++|+||+||++|.+..|.++++++|.+...+...|.+
T Consensus 390 ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 390 VDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred ecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999876655554433
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4e-57 Score=506.79 Aligned_cols=346 Identities=38% Similarity=0.598 Sum_probs=303.0
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV 277 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v 277 (693)
.+|.+++|++.++++|.++||..|+|+|.++|+.+++++|+|++||||||||++|++|+++.+... ...+++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--------~~~~~~ 77 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--------LKAPQI 77 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--------cCCCeE
Confidence 468999999999999999999999999999999999999999999999999999999999987543 234689
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcC-CCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEcc
Q psy1604 278 IICAPTRELVMQIHEVACKYAYS-SVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 356 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 356 (693)
|||+||++|+.|+++.+.++... .++.+..++|+.....+...+..+++|+|+||++|.+++.++.+.++++++|||||
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDE 157 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDE 157 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEecc
Confidence 99999999999999999988754 36889999999988888888888999999999999999999888999999999999
Q ss_pred chhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 357 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
||.|++++|...+..++.... ...|+++||||+|..+..+...++
T Consensus 158 Ad~ml~~gf~~di~~Il~~lp----~~~q~llfSAT~p~~i~~i~~~~l------------------------------- 202 (629)
T PRK11634 158 ADEMLRMGFIEDVETIMAQIP----EGHQTALFSATMPEAIRRITRRFM------------------------------- 202 (629)
T ss_pred HHHHhhcccHHHHHHHHHhCC----CCCeEEEEEccCChhHHHHHHHHc-------------------------------
Confidence 999999999999999987643 377999999999988776554441
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK 516 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 516 (693)
.++..+.+.........+.+.+..+....|...|..++...
T Consensus 203 ---------------------------------------~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~ 243 (629)
T PRK11634 203 ---------------------------------------KEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE 243 (629)
T ss_pred ---------------------------------------CCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhc
Confidence 00111111111122334455555666677888999999887
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLP 596 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p 596 (693)
...++||||+++..++.++..|...++.+..+||+|++.+|++++++|++|+++|||||+++++|||+|++++||+||+|
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P 323 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIP 323 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 597 QEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 597 ~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
.+..+|+||+|||||.|+.|.+++|+++.
T Consensus 324 ~~~e~yvqRiGRtGRaGr~G~ai~~v~~~ 352 (629)
T PRK11634 324 MDSESYVHRIGRTGRAGRAGRALLFVENR 352 (629)
T ss_pred CCHHHHHHHhccccCCCCcceEEEEechH
Confidence 99999999999999999999999999854
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=8.3e-57 Score=495.76 Aligned_cols=359 Identities=36% Similarity=0.523 Sum_probs=311.1
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV 277 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v 277 (693)
.+|.+++|++.++++|.++||..|||+|.++++.+++++|++++||||||||++|++|+++.+.... ..+++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~~ 75 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQA 75 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCceE
Confidence 4799999999999999999999999999999999999999999999999999999999999885432 24579
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCC-CeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEcc
Q psy1604 278 IICAPTRELVMQIHEVACKYAYSS-VLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 356 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 356 (693)
||++||++|+.|+.+.++++.... ++++..++|+.+...+...+..+++|+|+||++|.+++.++.+.++++++|||||
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 999999999999999999887543 6889999999998888888888999999999999999998888899999999999
Q ss_pred chhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 357 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
||+|++++|...+..++.... ..+|+++||||+|+.+..+...++
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~----~~~q~ll~SAT~~~~~~~l~~~~~------------------------------- 200 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAP----ARRQTLLFSATYPEGIAAISQRFQ------------------------------- 200 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCC----cccEEEEEEecCcHHHHHHHHHhc-------------------------------
Confidence 999999999999999987643 478999999999987766554431
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK 516 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 516 (693)
..+..+..... .....+.+.+..+....|...|..++...
T Consensus 201 ---------------------------------------~~~~~i~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 240 (460)
T PRK11776 201 ---------------------------------------RDPVEVKVEST-HDLPAIEQRFYEVSPDERLPALQRLLLHH 240 (460)
T ss_pred ---------------------------------------CCCEEEEECcC-CCCCCeeEEEEEeCcHHHHHHHHHHHHhc
Confidence 01111111111 11223455666667777889999999887
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLP 596 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p 596 (693)
...++||||+++..++.+++.|.+.++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|||+|++++||+||+|
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p 320 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELA 320 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHH
Q psy1604 597 QEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQ 640 (693)
Q Consensus 597 ~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~ 640 (693)
.++.+|+||+||+||.|+.|.|++|+.++ +....+.+.+.+..
T Consensus 321 ~~~~~yiqR~GRtGR~g~~G~ai~l~~~~-e~~~~~~i~~~~~~ 363 (460)
T PRK11776 321 RDPEVHVHRIGRTGRAGSKGLALSLVAPE-EMQRANAIEDYLGR 363 (460)
T ss_pred CCHhHhhhhcccccCCCCcceEEEEEchh-HHHHHHHHHHHhCC
Confidence 99999999999999999999999999865 45555666666544
No 23
>KOG0326|consensus
Probab=100.00 E-value=1.4e-58 Score=443.93 Aligned_cols=369 Identities=30% Similarity=0.478 Sum_probs=328.0
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV 277 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v 277 (693)
..|+++.|.+.++..+.+.||++|+|+|.++||.++.|+|+++.|..|+|||.+|.+|+|+.+.... ...++
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~--------~~IQ~ 156 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK--------NVIQA 156 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc--------cceeE
Confidence 4689999999999999999999999999999999999999999999999999999999999886553 34578
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccc
Q psy1604 278 IICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEA 357 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEa 357 (693)
+|++|||+||.|+.+.++++.+..++++....||.+.....-.+....+++|+||++++++.+++.-.++++.++|+|||
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 99999999999999999999999999999999999988777778889999999999999999998888999999999999
Q ss_pred hhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhh
Q psy1604 358 DRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRM 437 (693)
Q Consensus 358 h~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~ 437 (693)
|.|++..|.+.+..++..++ +.+|++++|||+|-.+..+..+++
T Consensus 237 DKlLs~~F~~~~e~li~~lP----~~rQillySATFP~tVk~Fm~~~l-------------------------------- 280 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLP----KERQILLYSATFPLTVKGFMDRHL-------------------------------- 280 (459)
T ss_pred hhhhchhhhhHHHHHHHhCC----ccceeeEEecccchhHHHHHHHhc--------------------------------
Confidence 99999999999999998744 589999999999998887765551
Q ss_pred hhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccC
Q psy1604 438 LDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKD 517 (693)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~ 517 (693)
.+.| .+.. ...-+...+.|.+..+.+.+|+..|-.++....
T Consensus 281 -------------------------------------~kPy-~INL-M~eLtl~GvtQyYafV~e~qKvhCLntLfskLq 321 (459)
T KOG0326|consen 281 -------------------------------------KKPY-EINL-MEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQ 321 (459)
T ss_pred -------------------------------------cCcc-eeeh-hhhhhhcchhhheeeechhhhhhhHHHHHHHhc
Confidence 0000 0000 001122345666777788899999999998888
Q ss_pred CCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCC
Q psy1604 518 EDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQ 597 (693)
Q Consensus 518 ~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~ 597 (693)
-++.||||++...++.+++.+.+.|+.+..+|+.|-|+.|..++.+|++|.++.|||||.+.|||||+++++|||||+|+
T Consensus 322 INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 322 INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHh
Q psy1604 598 EIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLK 650 (693)
Q Consensus 598 s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~ 650 (693)
+.++|+||+||.||+|..|.++.+++. +|...+..+.+-|.....++|...+
T Consensus 402 ~aEtYLHRIGRsGRFGhlGlAInLity-edrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 402 NAETYLHRIGRSGRFGHLGLAINLITY-EDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred CHHHHHHHccCCccCCCcceEEEEEeh-hhhhhHHHHHHHhccccccCCCcCC
Confidence 999999999999999999999999984 4677778888888888888886554
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1e-55 Score=484.19 Aligned_cols=363 Identities=37% Similarity=0.588 Sum_probs=307.0
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEE
Q psy1604 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVI 278 (693)
Q Consensus 199 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vL 278 (693)
+|++++|++.+++.|...||..|+++|.++++.+++++|++++||||+|||++|++|+++++...+... ...+++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~----~~~~~~l 77 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRK----SGPPRIL 77 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccC----CCCceEE
Confidence 589999999999999999999999999999999999999999999999999999999999987643211 2346899
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccch
Q psy1604 279 ICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 358 (693)
Q Consensus 279 il~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah 358 (693)
|++||++|+.|+++.+..+....++++..++|+.....+...+..+++|+|+||++|++++.+..+.+.++++|||||||
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah 157 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD 157 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH
Confidence 99999999999999999999888999999999999888888888889999999999999999888889999999999999
Q ss_pred hhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchh-HHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhh
Q psy1604 359 RMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPET-IQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRM 437 (693)
Q Consensus 359 ~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~ 437 (693)
+|++++|...+..+..... ...|+++||||++.. +..+...++
T Consensus 158 ~~l~~~~~~~~~~i~~~~~----~~~q~~~~SAT~~~~~~~~~~~~~~-------------------------------- 201 (434)
T PRK11192 158 RMLDMGFAQDIETIAAETR----WRKQTLLFSATLEGDAVQDFAERLL-------------------------------- 201 (434)
T ss_pred HHhCCCcHHHHHHHHHhCc----cccEEEEEEeecCHHHHHHHHHHHc--------------------------------
Confidence 9999999999988876533 357999999998743 333222210
Q ss_pred hhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEcc-chhHHHHHHHHHhcc
Q psy1604 438 LDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVP-KQQKKKKLLELLREK 516 (693)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~L~~~l~~~ 516 (693)
.+...+...........+.+.+.... ...|...|..++...
T Consensus 202 --------------------------------------~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~ 243 (434)
T PRK11192 202 --------------------------------------NDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQP 243 (434)
T ss_pred --------------------------------------cCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcC
Confidence 01111111111112223334444343 356778888888776
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLP 596 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p 596 (693)
...++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p 323 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMP 323 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHH
Q psy1604 597 QEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQ 640 (693)
Q Consensus 597 ~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~ 640 (693)
.+...|+||+||+||.|.+|.+++|++. .|...+..+.+.+..
T Consensus 324 ~s~~~yiqr~GR~gR~g~~g~ai~l~~~-~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 324 RSADTYLHRIGRTGRAGRKGTAISLVEA-HDHLLLGKIERYIEE 366 (434)
T ss_pred CCHHHHhhcccccccCCCCceEEEEecH-HHHHHHHHHHHHHhc
Confidence 9999999999999999999999999984 566677777766654
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.5e-55 Score=481.33 Aligned_cols=374 Identities=37% Similarity=0.553 Sum_probs=314.5
Q ss_pred CCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCC
Q psy1604 195 RPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQ 274 (693)
Q Consensus 195 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~ 274 (693)
.....|.+++|++.+.+.|.+.||.+||++|.++|+.+++|+|+++++|||||||++|++|+++.+...+.... .....
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~-~~~~~ 162 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKE-RYMGE 162 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccc-cccCC
Confidence 33457999999999999999999999999999999999999999999999999999999999999987643210 11225
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHh-cCCcEEEechhhHHHHHhcCCcCCCceeEEE
Q psy1604 275 PEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLE-KGCNILVATMGRLKDILDRGRISLASVRFVV 353 (693)
Q Consensus 275 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~-~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lV 353 (693)
+++|||+||++|+.|+++.++.+....++++..++|+.....+.+.+. ..++|+|+||++|++++.+....++++++||
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEE
Confidence 689999999999999999999998888889999999987766666654 4689999999999999988888899999999
Q ss_pred EccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEech
Q psy1604 354 LDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 433 (693)
Q Consensus 354 lDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~ 433 (693)
|||||++++.+|...+..++... +....+|++++|||++..+..+...+..
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~--~~~~~~q~i~~SAT~~~~~~~~~~~~~~--------------------------- 293 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQT--PRKEERQTLLFSATFTDDVMNLAKQWTT--------------------------- 293 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhC--CCCCCceEEEEEeecCHHHHHHHHHhcc---------------------------
Confidence 99999999999999999888764 3334679999999998776665444310
Q ss_pred hhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHH
Q psy1604 434 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELL 513 (693)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l 513 (693)
....+...........+.+.+..+....|...|..++
T Consensus 294 -------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll 330 (475)
T PRK01297 294 -------------------------------------------DPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLV 330 (475)
T ss_pred -------------------------------------------CCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHH
Confidence 0000111111112223344455556667888888888
Q ss_pred hccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEc
Q psy1604 514 REKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINY 593 (693)
Q Consensus 514 ~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~ 593 (693)
......++||||+++..++.+++.|...++.+..+||++++.+|.++++.|++|+++|||||+++++|||||++++||+|
T Consensus 331 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~ 410 (475)
T PRK01297 331 TQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINF 410 (475)
T ss_pred HhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEe
Confidence 87777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcC
Q psy1604 594 DLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAG 642 (693)
Q Consensus 594 d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~ 642 (693)
|+|.|..+|+||+||+||.|++|.+++|+.. +|..++..+.+++....
T Consensus 411 ~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~-~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 411 TLPEDPDDYVHRIGRTGRAGASGVSISFAGE-DDAFQLPEIEELLGRKI 458 (475)
T ss_pred CCCCCHHHHHHhhCccCCCCCCceEEEEecH-HHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999985 47777888888876653
No 26
>KOG0348|consensus
Probab=100.00 E-value=7.3e-57 Score=458.93 Aligned_cols=396 Identities=33% Similarity=0.499 Sum_probs=314.5
Q ss_pred CCCCCCCCccccCCCCHHHHHHHHh-CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCccc
Q psy1604 191 DNPPRPIESFESAGLREILVKNLKK-SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVT 269 (693)
Q Consensus 191 ~~~~~~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~ 269 (693)
.+.|-.-..|..++|++.+.+.|+. +++..||.+|+++||.+++|+|++|.++||||||++|++|+++.|........
T Consensus 129 ~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~- 207 (708)
T KOG0348|consen 129 SEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ- 207 (708)
T ss_pred cccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc-
Confidence 3445555679999999999999985 69999999999999999999999999999999999999999999988765543
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCC-CeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC-CcCCC
Q psy1604 270 GYCAQPEVIICAPTRELVMQIHEVACKYAYSS-VLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG-RISLA 347 (693)
Q Consensus 270 ~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-~~~l~ 347 (693)
+..++.+|||+||||||.|+++.+.++.... .+-.+.+.||.........++++++|+|+|||+|.++|.+. .+.++
T Consensus 208 -Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s 286 (708)
T KOG0348|consen 208 -RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFS 286 (708)
T ss_pred -ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheee
Confidence 4788999999999999999999999987654 34556788999888888999999999999999999999875 47789
Q ss_pred ceeEEEEccchhhhhCCchHHHHHHhccCCC--------CC-CCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhh
Q psy1604 348 SVRFVVLDEADRMLDMGFLGDIQHVMQHSTM--------PD-VANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDR 418 (693)
Q Consensus 348 ~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~--------~~-~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~ 418 (693)
.+++|||||+|++++.||..++..|++.... +. .+..|.+++|||+.+.+..++..
T Consensus 287 ~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~--------------- 351 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADL--------------- 351 (708)
T ss_pred eeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhc---------------
Confidence 9999999999999999999999999876411 00 12478999999999888776533
Q ss_pred ccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEE
Q psy1604 419 GRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTIL 498 (693)
Q Consensus 419 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 498 (693)
++.++-++.+|+.+.... .......... +. ....-.-+..+|+. +.|.+.
T Consensus 352 ---sLkDpv~I~ld~s~~~~~----p~~~a~~ev~---~~-~~~~~l~~~~iPeq-------------------L~qry~ 401 (708)
T KOG0348|consen 352 ---SLKDPVYISLDKSHSQLN----PKDKAVQEVD---DG-PAGDKLDSFAIPEQ-------------------LLQRYT 401 (708)
T ss_pred ---cccCceeeeccchhhhcC----cchhhhhhcC---Cc-ccccccccccCcHH-------------------hhhceE
Confidence 345555555554443221 0000000000 00 00000122233333 455566
Q ss_pred EccchhHHHHHHHHHhc----cCCCcEEEEecChHhHHHHHHHHhhC----------------------CCceEEecCCC
Q psy1604 499 EVPKQQKKKKLLELLRE----KDEDGVIVFVSTIRNADFIACYLCET----------------------EIATTSIHGSR 552 (693)
Q Consensus 499 ~~~~~~k~~~L~~~l~~----~~~~kvLVF~~s~~~a~~l~~~L~~~----------------------~~~v~~lhg~~ 552 (693)
.++...++..|..+|.. ....++|||+.+.+.+++-+..|.+. +.++..+||+|
T Consensus 402 vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm 481 (708)
T KOG0348|consen 402 VVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSM 481 (708)
T ss_pred ecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCch
Confidence 66777777777766654 56678999999999999988887542 24578899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHH
Q psy1604 553 LQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAK 632 (693)
Q Consensus 553 ~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~ 632 (693)
+|++|..+++.|...+..||+|||+++||||+|+|++||+||.|.+.++|+||+|||+|+|.+|.+++|+.|.+.+ +.+
T Consensus 482 ~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eae-y~~ 560 (708)
T KOG0348|consen 482 EQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAE-YVN 560 (708)
T ss_pred hHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHH-HHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987643 444
Q ss_pred HH
Q psy1604 633 DL 634 (693)
Q Consensus 633 ~l 634 (693)
.+
T Consensus 561 ~l 562 (708)
T KOG0348|consen 561 YL 562 (708)
T ss_pred HH
Confidence 33
No 27
>KOG0347|consensus
Probab=100.00 E-value=4.5e-57 Score=461.78 Aligned_cols=400 Identities=30% Similarity=0.478 Sum_probs=304.5
Q ss_pred CCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcC-CCEEEEccCCCChhHHHHHHHHHHhhcCCCCc---
Q psy1604 192 NPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEG-RDLMGCAQTGSGKTAAFLIPIMHHLLESPGEL--- 267 (693)
Q Consensus 192 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g-~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~--- 267 (693)
..+..+..|.++.|+..++++|..+||..||++|...||.+..| .|+|..|.||||||+||.+||++.+.......
T Consensus 175 ~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~ 254 (731)
T KOG0347|consen 175 SSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQEL 254 (731)
T ss_pred ccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhh
Confidence 34566778999999999999999999999999999999999999 79999999999999999999999776543211
Q ss_pred --ccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCc-
Q psy1604 268 --VTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRI- 344 (693)
Q Consensus 268 --~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~- 344 (693)
......++..||++|||+||.|+.+.+......+++++..++||.....+.+.+...++|+|+|||||+.+++.+..
T Consensus 255 ~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 255 SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred hhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh
Confidence 11123334599999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred --CCCceeEEEEccchhhhhCCchHHHHHHhccCC-CCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccc
Q psy1604 345 --SLASVRFVVLDEADRMLDMGFLGDIQHVMQHST-MPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRI 421 (693)
Q Consensus 345 --~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~-~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 421 (693)
+++++++||+||+|||.+.+++..+..++..+. .+....+|++.||||+.-..+.-..........+
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~---------- 404 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKE---------- 404 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchh----------
Confidence 678899999999999999999999999998765 3445678999999998644333221110000000
Q ss_pred cccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEcc
Q psy1604 422 SLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVP 501 (693)
Q Consensus 422 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (693)
..+...++..+....+. ..+..+...........+....+.++
T Consensus 405 ------------------~~~~~kiq~Lmk~ig~~-------------------~kpkiiD~t~q~~ta~~l~Es~I~C~ 447 (731)
T KOG0347|consen 405 ------------------DELNAKIQHLMKKIGFR-------------------GKPKIIDLTPQSATASTLTESLIECP 447 (731)
T ss_pred ------------------hhhhHHHHHHHHHhCcc-------------------CCCeeEecCcchhHHHHHHHHhhcCC
Confidence 00011111111111110 11111111111111111111111111
Q ss_pred chhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCccccc
Q psy1604 502 KQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRG 581 (693)
Q Consensus 502 ~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~G 581 (693)
..+|.-.|+.+|. ..++++|||||+++.+.+|+-+|...+++...+|+.|.|.+|.+.+++|+.....||||||+++||
T Consensus 448 ~~eKD~ylyYfl~-ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARG 526 (731)
T KOG0347|consen 448 PLEKDLYLYYFLT-RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARG 526 (731)
T ss_pred ccccceeEEEEEe-ecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhcc
Confidence 1111111111121 347889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHH
Q psy1604 582 LDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQ 640 (693)
Q Consensus 582 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~ 640 (693)
||||+|+|||||-.|++.+.|+||.|||+|++..|..++|+.|.+ -..++.|.+.|..
T Consensus 527 LDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e-~~~~~KL~ktL~k 584 (731)
T KOG0347|consen 527 LDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE-VGPLKKLCKTLKK 584 (731)
T ss_pred CCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH-hHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999875 4445555555544
No 28
>KOG0332|consensus
Probab=100.00 E-value=5.3e-54 Score=420.95 Aligned_cols=379 Identities=30% Similarity=0.415 Sum_probs=315.4
Q ss_pred cCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCC
Q psy1604 189 SGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGE 266 (693)
Q Consensus 189 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~ 266 (693)
+++.|...+.+|++++|.|++++.|..++|.+|+.+|..++|.++.. +|+|.+++.|+|||.+|.|.||.++...
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--- 157 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--- 157 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc---
Confidence 46677788999999999999999999999999999999999999975 8999999999999999999999887544
Q ss_pred cccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhc-CCcC
Q psy1604 267 LVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDR-GRIS 345 (693)
Q Consensus 267 ~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~-~~~~ 345 (693)
...|.+++|+|||+||.|+.+.+.+.++...+......-+.....- . .-..+|+|+||+.+.+++.. ..+.
T Consensus 158 -----~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~--~i~eqIviGTPGtv~Dlm~klk~id 229 (477)
T KOG0332|consen 158 -----VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-N--KLTEQIVIGTPGTVLDLMLKLKCID 229 (477)
T ss_pred -----ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-C--cchhheeeCCCccHHHHHHHHHhhC
Confidence 3457899999999999999999999998888887777655421111 1 11358999999999999987 6678
Q ss_pred CCceeEEEEccchhhhhC-CchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhcccccc
Q psy1604 346 LASVRFVVLDEADRMLDM-GFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLA 424 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~-~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 424 (693)
+..++++|+||||.|++. ||..+-..|..... ++.|+++||||+...+..++..++
T Consensus 230 ~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP----~~~QllLFSATf~e~V~~Fa~kiv------------------- 286 (477)
T KOG0332|consen 230 LEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP----RNQQLLLFSATFVEKVAAFALKIV------------------- 286 (477)
T ss_pred hhhceEEEecchhhhhhcccccccchhhhhhcC----CcceEEeeechhHHHHHHHHHHhc-------------------
Confidence 899999999999999874 67777666666533 488999999999888888776662
Q ss_pred ceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEcc-ch
Q psy1604 425 SVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVP-KQ 503 (693)
Q Consensus 425 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 503 (693)
.+...+.+....-...++.|.+..+. ..
T Consensus 287 ---------------------------------------------------pn~n~i~Lk~eel~L~~IkQlyv~C~~~~ 315 (477)
T KOG0332|consen 287 ---------------------------------------------------PNANVIILKREELALDNIKQLYVLCACRD 315 (477)
T ss_pred ---------------------------------------------------CCCceeeeehhhccccchhhheeeccchh
Confidence 11111122222233344555555554 45
Q ss_pred hHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCC
Q psy1604 504 QKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLD 583 (693)
Q Consensus 504 ~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiD 583 (693)
.|.+.|.++.....-++.||||.+++.|..|+..|.+.|+.+..+||+|...+|..++++|+.|+.+|||+|++++||||
T Consensus 316 ~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiD 395 (477)
T KOG0332|consen 316 DKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGID 395 (477)
T ss_pred hHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccc
Confidence 78899999887778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCC------ChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcC-CCchhHHhcc
Q psy1604 584 IKGIRHVINYDLPQ------EIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAG-QPVPEFLKFG 652 (693)
Q Consensus 584 ip~v~~VI~~d~p~------s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~-~~vp~~l~~~ 652 (693)
++.|++|||||+|- +++.|+||+||+||+|++|.++.|++.+....++..+.+.+.... ...|+.++++
T Consensus 396 v~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 396 VAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred cceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 99999999999994 789999999999999999999999998888888888888886553 4445545443
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.5e-52 Score=455.85 Aligned_cols=368 Identities=30% Similarity=0.491 Sum_probs=302.0
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCC
Q psy1604 196 PIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQP 275 (693)
Q Consensus 196 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~ 275 (693)
...+|++++|++.+.++|.+.||..|+|+|.++++.+++++|++++||||||||++|++|+++.+... ..++
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--------~~~~ 97 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--------LNAC 97 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--------CCCc
Confidence 35789999999999999999999999999999999999999999999999999999999999887432 2345
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEc
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLD 355 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlD 355 (693)
++|||+||++|+.|+.+.+..+.....+.+..++|+.........+..+++|+|+||++|.+.+.+....++++++||+|
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViD 177 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILD 177 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEe
Confidence 89999999999999999999998777788888889888777777777889999999999999998888889999999999
Q ss_pred cchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhh
Q psy1604 356 EADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 435 (693)
Q Consensus 356 Eah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~ 435 (693)
|||++.+.++...+..++.... +..|++++|||+|+....+...++.. .....
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~~------------------~~~~~----- 230 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLP----PDVQVALFSATMPNEILELTTKFMRD------------------PKRIL----- 230 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCC----CCcEEEEEEecCCHHHHHHHHHHcCC------------------CEEEE-----
Confidence 9999999999888888876532 46799999999988665443332100 00000
Q ss_pred hhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccc-hhHHHHHHHHHh
Q psy1604 436 RMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPK-QQKKKKLLELLR 514 (693)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~~l~ 514 (693)
..........+.+.+..... ..+...+..++.
T Consensus 231 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (401)
T PTZ00424 231 -----------------------------------------------VKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYE 263 (401)
T ss_pred -----------------------------------------------eCCCCcccCCceEEEEecChHHHHHHHHHHHHH
Confidence 00000001111222222222 345666777777
Q ss_pred ccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcC
Q psy1604 515 EKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYD 594 (693)
Q Consensus 515 ~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d 594 (693)
.....++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+||
T Consensus 264 ~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~ 343 (401)
T PTZ00424 264 TLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYD 343 (401)
T ss_pred hcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEEC
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCch
Q psy1604 595 LPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVP 646 (693)
Q Consensus 595 ~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp 646 (693)
+|.+...|+||+||+||.|+.|.|++|+++ ++...++.+.+.+....++.+
T Consensus 344 ~p~s~~~y~qr~GRagR~g~~G~~i~l~~~-~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 344 LPASPENYIHRIGRSGRFGRKGVAINFVTP-DDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred CCCCHHHEeecccccccCCCCceEEEEEcH-HHHHHHHHHHHHHCCcccccC
Confidence 999999999999999999999999999985 455666666666654444333
No 30
>KOG0346|consensus
Probab=100.00 E-value=2.8e-53 Score=423.74 Aligned_cols=366 Identities=31% Similarity=0.422 Sum_probs=309.6
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV 277 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v 277 (693)
.+|++++|++.+++++.+.||.+||-+|..+||.++.|+|+++.|.||||||.+|++|+++.|+...... ....++.+
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa 96 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSA 96 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc--ccccccee
Confidence 6899999999999999999999999999999999999999999999999999999999999999865432 22567899
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCC--CeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC-cCCCceeEEEE
Q psy1604 278 IICAPTRELVMQIHEVACKYAYSS--VLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR-ISLASVRFVVL 354 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~~--~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~-~~l~~~~~lVl 354 (693)
+||+|||||++|++..+.++.... .+++.-+..+.+.......+...++|+|+||++++.++..+. ..+..++++|+
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVv 176 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVV 176 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEe
Confidence 999999999999999998875433 245555555666666667778899999999999999999887 57888999999
Q ss_pred ccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechh
Q psy1604 355 DEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEA 434 (693)
Q Consensus 355 DEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~ 434 (693)
||||.++.-|+..++..+..+++ +..|.++||||+.+++..+...++
T Consensus 177 DEADLllsfGYeedlk~l~~~LP----r~~Q~~LmSATl~dDv~~LKkL~l----------------------------- 223 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLP----RIYQCFLMSATLSDDVQALKKLFL----------------------------- 223 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCC----chhhheeehhhhhhHHHHHHHHhc-----------------------------
Confidence 99999999999999999998854 478999999999998887765551
Q ss_pred hhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccc-cccceeEEEEEccchhHHHHHHHHH
Q psy1604 435 DRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGG-ASTDVVQTILEVPKQQKKKKLLELL 513 (693)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~L~~~l 513 (693)
.+++.+....... ....+.|....+.+.+|...++.++
T Consensus 224 -----------------------------------------~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyall 262 (569)
T KOG0346|consen 224 -----------------------------------------HNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALL 262 (569)
T ss_pred -----------------------------------------cCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHH
Confidence 1222222222111 3345677778888899999988888
Q ss_pred hc-cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC----------------
Q psy1604 514 RE-KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA---------------- 576 (693)
Q Consensus 514 ~~-~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~---------------- 576 (693)
+- .-.+++|||+|+.+.|..+.-+|.+.|++.++++|.|+...|..++++|..|-++|+||||
T Consensus 263 KL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~ 342 (569)
T KOG0346|consen 263 KLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKS 342 (569)
T ss_pred HHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccc
Confidence 75 4578899999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------cccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHH
Q psy1604 577 -------------------VASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRI 637 (693)
Q Consensus 577 -------------------v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~ 637 (693)
-++||||+..|.+|||||+|.+...|+||+|||+|.+++|.+++|+.|.+.. -...+.++
T Consensus 343 ~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~-g~~~le~~ 421 (569)
T KOG0346|consen 343 DEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF-GKESLESI 421 (569)
T ss_pred cccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh-hhhHHHHH
Confidence 2349999999999999999999999999999999999999999999987543 22444444
Q ss_pred HHH
Q psy1604 638 LEQ 640 (693)
Q Consensus 638 l~~ 640 (693)
+..
T Consensus 422 ~~d 424 (569)
T KOG0346|consen 422 LKD 424 (569)
T ss_pred Hhh
Confidence 443
No 31
>KOG0327|consensus
Probab=100.00 E-value=7.2e-52 Score=410.41 Aligned_cols=370 Identities=31% Similarity=0.511 Sum_probs=327.1
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCe
Q psy1604 197 IESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPE 276 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~ 276 (693)
+.+|++++|++.|++.+...||++|+.+|+.||..+..|.|+.+++++|+|||.+|.+++++.+-.. .....
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~--------~ke~q 96 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS--------VKETQ 96 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc--------hHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999987333 23457
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHH-HHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEc
Q psy1604 277 VIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNR-QLEKGCNILVATMGRLKDILDRGRISLASVRFVVLD 355 (693)
Q Consensus 277 vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~-~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlD 355 (693)
+|+++|||+|+.|+.+....+....+.++..+.|+.+...... .....++|+++||+++.+.++...+....++++|+|
T Consensus 97 alilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlD 176 (397)
T KOG0327|consen 97 ALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLD 176 (397)
T ss_pred HHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeec
Confidence 9999999999999999999999999999998999887664433 344568999999999999999888888889999999
Q ss_pred cchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhh
Q psy1604 356 EADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 435 (693)
Q Consensus 356 Eah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~ 435 (693)
|||.|+..+|..++..++.... .+.|++++|||+|.++..+...|+
T Consensus 177 EaDEmLs~gfkdqI~~if~~lp----~~vQv~l~SAT~p~~vl~vt~~f~------------------------------ 222 (397)
T KOG0327|consen 177 EADEMLSRGFKDQIYDIFQELP----SDVQVVLLSATMPSDVLEVTKKFM------------------------------ 222 (397)
T ss_pred chHhhhccchHHHHHHHHHHcC----cchhheeecccCcHHHHHHHHHhc------------------------------
Confidence 9999999999999999998854 467999999999999988877761
Q ss_pred hhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc
Q psy1604 436 RMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE 515 (693)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~ 515 (693)
.+++.+.+........-+.|.+.++.+++|+..|..+..
T Consensus 223 ----------------------------------------~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~- 261 (397)
T KOG0327|consen 223 ----------------------------------------REPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR- 261 (397)
T ss_pred ----------------------------------------cCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH-
Confidence 234444444444445566788888888889999999998
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCC
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDL 595 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~ 595 (693)
...+.+||||+++.++.+...|..+++.+..+|++|.+.+|..+++.|++|..+|||+|+.+++|||+.++..||||++
T Consensus 262 -~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydl 340 (397)
T KOG0327|consen 262 -RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDL 340 (397)
T ss_pred -hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecc
Confidence 5667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhc
Q psy1604 596 PQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKF 651 (693)
Q Consensus 596 p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~ 651 (693)
|....+|+||+||+||+|++|.++.|++ +.|...++++.+.+.....++|....+
T Consensus 341 P~~~~~yihR~gr~gr~grkg~~in~v~-~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 341 PARKENYIHRIGRAGRFGRKGVAINFVT-EEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred ccchhhhhhhcccccccCCCceeeeeeh-HhhHHHHHhHHHhcCCcceecccchhh
Confidence 9999999999999999999999999998 557788888888887777777765443
No 32
>KOG0344|consensus
Probab=100.00 E-value=3.6e-51 Score=425.32 Aligned_cols=395 Identities=33% Similarity=0.492 Sum_probs=336.4
Q ss_pred cceeeecCCCCCCCCCcccc----CCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHH
Q psy1604 183 NVEVKVSGDNPPRPIESFES----AGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMH 258 (693)
Q Consensus 183 ~~~v~~~~~~~~~~~~~f~~----~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~ 258 (693)
...+.+.|.+.|.++.+|.+ ...++.+++++...+|..|+|+|.+++|.++.+++++.|||||||||++|.+|++.
T Consensus 117 ~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~ 196 (593)
T KOG0344|consen 117 SNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQ 196 (593)
T ss_pred cceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHH
Confidence 34577889999999999988 57899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh--cCCCeeEEEEeCCCC-hHHHHHHHhcCCcEEEechhhH
Q psy1604 259 HLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA--YSSVLKICLHYGGAS-SMHFNRQLEKGCNILVATMGRL 335 (693)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~--~~~~l~~~~~~gg~~-~~~~~~~~~~~~~IlV~Tp~~L 335 (693)
+|...... ....+.+++|+.|||+|+.|++.++.++. ....+.......... ...........++|+|.||-++
T Consensus 197 ~L~~~~~~---~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri 273 (593)
T KOG0344|consen 197 HLKDLSQE---KHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRI 273 (593)
T ss_pred HHHHhhcc---cCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHH
Confidence 99765421 11456789999999999999999999998 555555544433222 2222222344689999999999
Q ss_pred HHHHhcCC--cCCCceeEEEEccchhhhhC-CchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhh
Q psy1604 336 KDILDRGR--ISLASVRFVVLDEADRMLDM-GFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRL 412 (693)
Q Consensus 336 ~~~l~~~~--~~l~~~~~lVlDEah~l~~~-~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l 412 (693)
..++..+. +.++.+.++|+||||++++. .|..++..|+..+.. ++..+-+||||++..+..++...
T Consensus 274 ~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s---~~i~~a~FSat~~~~VEE~~~~i-------- 342 (593)
T KOG0344|consen 274 VGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS---PDIRVALFSATISVYVEEWAELI-------- 342 (593)
T ss_pred HHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC---cchhhhhhhccccHHHHHHHHHh--------
Confidence 99998876 68899999999999999999 899999999887654 47788999999999888776554
Q ss_pred HHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccc
Q psy1604 413 KDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTD 492 (693)
Q Consensus 413 ~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~ 492 (693)
..+.+.+.++.....+..
T Consensus 343 --------------------------------------------------------------~~~~~~vivg~~~sa~~~ 360 (593)
T KOG0344|consen 343 --------------------------------------------------------------KSDLKRVIVGLRNSANET 360 (593)
T ss_pred --------------------------------------------------------------hccceeEEEecchhHhhh
Confidence 123344444444444555
Q ss_pred eeEEEEEc-cchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHH-hhCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Q psy1604 493 VVQTILEV-PKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYL-CETEIATTSIHGSRLQSQREQAIHDFKTKKMK 570 (693)
Q Consensus 493 ~~~~~~~~-~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L-~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ 570 (693)
+.|....+ ....|+..+.+++...-..++|||+.+.+.|..|...| .-.++.+.++||..++.+|++++++|+.|++.
T Consensus 361 V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 361 VDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred hhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCee
Confidence 55555444 45678999999999888889999999999999999999 66789999999999999999999999999999
Q ss_pred EEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHh
Q psy1604 571 VLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLK 650 (693)
Q Consensus 571 ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~ 650 (693)
+||||++++||||+.+++.|||||+|.+..+|+||+||+||+|+.|.+++||+ +.|..+.+.+.+.+.+.+-++|+|+.
T Consensus 441 vLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfyt-d~d~~~ir~iae~~~~sG~evpe~~m 519 (593)
T KOG0344|consen 441 VLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYT-DQDMPRIRSIAEVMEQSGCEVPEKIM 519 (593)
T ss_pred EEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEec-cccchhhhhHHHHHHHcCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999998 67889999999999999999999998
Q ss_pred ccCC
Q psy1604 651 FGGG 654 (693)
Q Consensus 651 ~~~~ 654 (693)
.+..
T Consensus 520 ~~~k 523 (593)
T KOG0344|consen 520 GIKK 523 (593)
T ss_pred hhhh
Confidence 8764
No 33
>KOG0350|consensus
Probab=100.00 E-value=4.1e-49 Score=399.83 Aligned_cols=368 Identities=29% Similarity=0.428 Sum_probs=270.5
Q ss_pred HHHHHHhCCCCCCCHHHHhhhhhhhc---------CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEE
Q psy1604 209 LVKNLKKSNYTKPTPIQKYAIPAGLE---------GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVII 279 (693)
Q Consensus 209 l~~~l~~~g~~~p~~~Q~~ai~~il~---------g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLi 279 (693)
+..++.++++.+++|+|..++|.++. .+|+.+.||||||||++|.+||++.+...+. ...++||
T Consensus 148 ~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v-------~~LRavV 220 (620)
T KOG0350|consen 148 IDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV-------KRLRAVV 220 (620)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc-------cceEEEE
Confidence 34458899999999999999999862 4799999999999999999999999977763 3468999
Q ss_pred EcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhc-C----CcEEEechhhHHHHHhc-CCcCCCceeEEE
Q psy1604 280 CAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEK-G----CNILVATMGRLKDILDR-GRISLASVRFVV 353 (693)
Q Consensus 280 l~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~-~----~~IlV~Tp~~L~~~l~~-~~~~l~~~~~lV 353 (693)
|+||++|+.|+++.|.++....++.++.+.|..+.....+++.. . .||+|+||+||.+++.+ ..+.|++++++|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLV 300 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLV 300 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEE
Confidence 99999999999999999999999999999998888777777754 2 38999999999999985 568999999999
Q ss_pred EccchhhhhCCchHHHHHHhccCCCCC-----------CCCcceEEeeccCchh------HHhh-hhhhhhhchhhhHHH
Q psy1604 354 LDEADRMLDMGFLGDIQHVMQHSTMPD-----------VANRQTLMFSATFPET------IQKK-GCNILVATMGRLKDI 415 (693)
Q Consensus 354 lDEah~l~~~~~~~~i~~i~~~~~~~~-----------~~~~q~lllSAT~~~~------~~~~-~~~~~~~~~~~l~~~ 415 (693)
|||||||++..|...+..++....... ....+-..++++.... +..+ ....+...|..+.++
T Consensus 301 IDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l 380 (620)
T KOG0350|consen 301 IDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL 380 (620)
T ss_pred echHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh
Confidence 999999999888877777665432221 0001111111111000 0000 000000000000000
Q ss_pred HhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeE
Q psy1604 416 LDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQ 495 (693)
Q Consensus 416 l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~ 495 (693)
....++.. .. ........++|..+...+
T Consensus 381 ------~l~~Prl~---------------------------~v--~~~~~~ryslp~~l~~~~----------------- 408 (620)
T KOG0350|consen 381 ------TLHIPRLF---------------------------HV--SKPLIGRYSLPSSLSHRL----------------- 408 (620)
T ss_pred ------hcCCCceE---------------------------Ee--ecccceeeecChhhhhce-----------------
Confidence 00000000 00 000011122233332222
Q ss_pred EEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHh----hCCCceEEecCCCCHHHHHHHHHHHhcCCCcE
Q psy1604 496 TILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLC----ETEIATTSIHGSRLQSQREQAIHDFKTKKMKV 571 (693)
Q Consensus 496 ~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~----~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~I 571 (693)
.......|...+..++....-.++|+|+++...+.+++..|+ ..++.+..+.|.++...|.+.++.|..|++++
T Consensus 409 --vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~v 486 (620)
T KOG0350|consen 409 --VVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINV 486 (620)
T ss_pred --eecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceE
Confidence 223334566777888888888999999999999999999886 44677888999999999999999999999999
Q ss_pred EEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHH
Q psy1604 572 LVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRI 637 (693)
Q Consensus 572 LVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~ 637 (693)
|||+|+++||||+.+++.|||||+|.+..+|+||+||++|+|+.|.|+.+++..+...+.+.+.+.
T Consensus 487 LIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 487 LICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred EEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999966555555544444
No 34
>KOG0337|consensus
Probab=100.00 E-value=1e-49 Score=396.41 Aligned_cols=362 Identities=35% Similarity=0.519 Sum_probs=314.3
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCe
Q psy1604 197 IESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPE 276 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~ 276 (693)
..+|+.++|+..+++++.+.||..|||+|++.+|.++++++++..+-||||||.+|++|++++|.... ..+.+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-------~~g~R 92 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLR 92 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-------ccccc
Confidence 56799999999999999999999999999999999999999999999999999999999999997654 34568
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEcc
Q psy1604 277 VIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 356 (693)
Q Consensus 277 vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 356 (693)
+++++|||+|+.|..+..+.++..+.++..+++|+....++...+..++||+++||+++..+.-.-.+.++.+.|||+||
T Consensus 93 alilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDE 172 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehh
Confidence 99999999999999999999999999999999999999999999988999999999999988776668899999999999
Q ss_pred chhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 357 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
+|++++++|.+++..++.... ..+|+++||||+|..+-.++..=+
T Consensus 173 adrlfemgfqeql~e~l~rl~----~~~QTllfSatlp~~lv~fakaGl------------------------------- 217 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLP----ESRQTLLFSATLPRDLVDFAKAGL------------------------------- 217 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCC----CcceEEEEeccCchhhHHHHHccC-------------------------------
Confidence 999999999999999998744 467999999999987655433220
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK 516 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 516 (693)
..+..+.+......+.++.-.+..+....|...|+.++...
T Consensus 218 ---------------------------------------~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~ 258 (529)
T KOG0337|consen 218 ---------------------------------------VPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGR 258 (529)
T ss_pred ---------------------------------------CCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhcc
Confidence 11111222222233333444455667788999999988873
Q ss_pred -CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCC
Q psy1604 517 -DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDL 595 (693)
Q Consensus 517 -~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~ 595 (693)
...+++||+.++.+++.+...|...++.+..++|.|++..|..-+.+|+.++..+||.|++++||+|||-.+.|||||+
T Consensus 259 ~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~ 338 (529)
T KOG0337|consen 259 IKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDF 338 (529)
T ss_pred ccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccC
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHH
Q psy1604 596 PQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQ 640 (693)
Q Consensus 596 p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~ 640 (693)
|.+...|+||+||+.|+|+.|.+|.|+.++++ .++-+|...+..
T Consensus 339 p~~~klFvhRVgr~aragrtg~aYs~V~~~~~-~yl~DL~lflgr 382 (529)
T KOG0337|consen 339 PPDDKLFVHRVGRVARAGRTGRAYSLVASTDD-PYLLDLQLFLGR 382 (529)
T ss_pred CCCCceEEEEecchhhccccceEEEEEecccc-hhhhhhhhhcCC
Confidence 99999999999999999999999999997654 455555555443
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.2e-48 Score=444.59 Aligned_cols=365 Identities=17% Similarity=0.224 Sum_probs=265.2
Q ss_pred CCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCC
Q psy1604 204 GLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPT 283 (693)
Q Consensus 204 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Pt 283 (693)
.|++.+.+.|++.||.+||++|.++++.+++|+|+++++|||||||++|++|+++.+...+ +.++|||+||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~---------~~~aL~l~Pt 90 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP---------RATALYLAPT 90 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC---------CcEEEEEcCh
Confidence 4899999999999999999999999999999999999999999999999999999987642 3589999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC----CcCCCceeEEEEccchh
Q psy1604 284 RELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG----RISLASVRFVVLDEADR 359 (693)
Q Consensus 284 r~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~----~~~l~~~~~lVlDEah~ 359 (693)
|+|+.|+.+.++++. ..++++..+.|+.+. .++..+..+++|+|+||++|...+... ...++++++|||||||.
T Consensus 91 raLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 91 KALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred HHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 999999999999987 446788777777664 445566778999999999997543221 12378999999999999
Q ss_pred hhhCCchHHHHHHhccCCC---CCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 360 MLDMGFLGDIQHVMQHSTM---PDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 360 l~~~~~~~~i~~i~~~~~~---~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
|.+ .|...+..++..+.. ....++|++++|||+++.... +..+. . ... ..++....
T Consensus 169 ~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~-~~~l~-g----------------~~~--~~i~~~~~ 227 (742)
T TIGR03817 169 YRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAA-ASRLI-G----------------APV--VAVTEDGS 227 (742)
T ss_pred ccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHH-HHHHc-C----------------CCe--EEECCCCC
Confidence 975 466666655543211 112367999999999875432 22210 0 000 00100000
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK 516 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 516 (693)
+... ..+..+............ ..........+...+..++..
T Consensus 228 ----------------------------------~~~~-~~~~~~~p~~~~~~~~~~-~~~r~~~~~~~~~~l~~l~~~- 270 (742)
T TIGR03817 228 ----------------------------------PRGA-RTVALWEPPLTELTGENG-APVRRSASAEAADLLADLVAE- 270 (742)
T ss_pred ----------------------------------CcCc-eEEEEecCCccccccccc-cccccchHHHHHHHHHHHHHC-
Confidence 0000 000000000000000000 000011123455566666653
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhC--------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCET--------EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIR 588 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~--------~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~ 588 (693)
..++||||++++.++.++..|++. +..+..+||++++++|.+++++|++|++++||||+++++||||++++
T Consensus 271 -~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd 349 (742)
T TIGR03817 271 -GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLD 349 (742)
T ss_pred -CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCccccc
Confidence 578999999999999999988753 56788999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCC-CchHHHHHHHHHH
Q psy1604 589 HVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPD-QDGAIAKDLVRIL 638 (693)
Q Consensus 589 ~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~-~d~~~~~~l~~~l 638 (693)
+||+||+|.+.++|+||+|||||.|+.|.++++...+ .|..+.....+.+
T Consensus 350 ~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 350 AVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred EEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHh
Confidence 9999999999999999999999999999999998633 2333344343343
No 36
>KOG4284|consensus
Probab=100.00 E-value=2.3e-48 Score=403.65 Aligned_cols=352 Identities=28% Similarity=0.435 Sum_probs=300.8
Q ss_pred CCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCC
Q psy1604 193 PPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYC 272 (693)
Q Consensus 193 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~ 272 (693)
.+.....|+++-|...++..|+..+|..||++|..|||.++.+-|+||++..|+|||++|.+.+++.+... .
T Consensus 20 ~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~--------~ 91 (980)
T KOG4284|consen 20 QSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR--------S 91 (980)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc--------c
Confidence 34556789999999999999999999999999999999999999999999999999999999998887554 3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhc-CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeE
Q psy1604 273 AQPEVIICAPTRELVMQIHEVACKYAY-SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRF 351 (693)
Q Consensus 273 ~~~~vLil~Ptr~La~Q~~~~~~~~~~-~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 351 (693)
..+.++||+|||+++.|+.+.+.+++. ..++++.+.+||.........++ .++|+|+|||++.++++.+.++.+++++
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrl 170 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRL 170 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeE
Confidence 456899999999999999999999885 46789999999998776655554 4889999999999999999999999999
Q ss_pred EEEccchhhhh-CCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEE
Q psy1604 352 VVLDEADRMLD-MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVV 430 (693)
Q Consensus 352 lVlDEah~l~~-~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 430 (693)
+||||||.|.+ ..|..++..|+..+ | ..+|++.+|||.|..+.+...+++.
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~sl--P--~~rQv~a~SATYp~nLdn~Lsk~mr------------------------ 222 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSL--P--QIRQVAAFSATYPRNLDNLLSKFMR------------------------ 222 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhc--c--hhheeeEEeccCchhHHHHHHHHhc------------------------
Confidence 99999999998 67888999998874 4 4899999999999988877666521
Q ss_pred echhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEcc--------c
Q psy1604 431 LDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVP--------K 502 (693)
Q Consensus 431 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 502 (693)
++.++...........+.|.+.... .
T Consensus 223 ----------------------------------------------dp~lVr~n~~d~~L~GikQyv~~~~s~nnsveem 256 (980)
T KOG4284|consen 223 ----------------------------------------------DPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEM 256 (980)
T ss_pred ----------------------------------------------ccceeecccCCceeechhheeeeccCCcchHHHH
Confidence 1111111111111112233333222 2
Q ss_pred hhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccC
Q psy1604 503 QQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGL 582 (693)
Q Consensus 503 ~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~Gi 582 (693)
..|+..|-++++..+-.+.||||+....|+-++.+|+..|+.+.++.|.|+|.+|..+++.++.-.++|||+||..+|||
T Consensus 257 rlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGI 336 (980)
T KOG4284|consen 257 RLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGI 336 (980)
T ss_pred HHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccC
Confidence 45888888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCc
Q psy1604 583 DIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQD 627 (693)
Q Consensus 583 Dip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d 627 (693)
|-+++++|||.|.|.+..+|.||||||||+|..|.+++|+....+
T Consensus 337 Da~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 337 DADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred CccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999986544
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-45 Score=403.81 Aligned_cols=320 Identities=19% Similarity=0.291 Sum_probs=239.9
Q ss_pred hCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 215 KSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 215 ~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
.+||..|+|+|.++++.+++++|+++++|||+|||++|++|++.. ...+|||+||++|+.|+.+.+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQVLQL 71 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999998842 235899999999999999988
Q ss_pred HHHhcCCCeeEEEEeCCCChHHHHHH----HhcCCcEEEechhhHHHHHh-cCCc-CCCceeEEEEccchhhhhCC--ch
Q psy1604 295 CKYAYSSVLKICLHYGGASSMHFNRQ----LEKGCNILVATMGRLKDILD-RGRI-SLASVRFVVLDEADRMLDMG--FL 366 (693)
Q Consensus 295 ~~~~~~~~l~~~~~~gg~~~~~~~~~----~~~~~~IlV~Tp~~L~~~l~-~~~~-~l~~~~~lVlDEah~l~~~~--~~ 366 (693)
..+ ++....+.++......... .....+|+++||+++..... ...+ ...++++|||||||++.+++ |.
T Consensus 72 ~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr 147 (470)
T TIGR00614 72 KAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFR 147 (470)
T ss_pred HHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccH
Confidence 764 4666677766655433222 23358999999999753220 0111 46789999999999999876 55
Q ss_pred HHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccch
Q psy1604 367 GDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDI 446 (693)
Q Consensus 367 ~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 446 (693)
..+..+..... ..++.+++++|||+++.+.......+ .+ .......
T Consensus 148 ~~~~~l~~l~~--~~~~~~~l~lTAT~~~~~~~di~~~l--------------~l--~~~~~~~---------------- 193 (470)
T TIGR00614 148 PDYKALGSLKQ--KFPNVPIMALTATASPSVREDILRQL--------------NL--KNPQIFC---------------- 193 (470)
T ss_pred HHHHHHHHHHH--HcCCCceEEEecCCCHHHHHHHHHHc--------------CC--CCCcEEe----------------
Confidence 55544422111 11367899999999876544322110 00 0000000
Q ss_pred hHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc-cCCCcEEEEe
Q psy1604 447 QHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE-KDEDGVIVFV 525 (693)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~-~~~~kvLVF~ 525 (693)
.. ... +++...+.. ........+..++.. .....+||||
T Consensus 194 ---------------------~s----~~r--------------~nl~~~v~~-~~~~~~~~l~~~l~~~~~~~~~IIF~ 233 (470)
T TIGR00614 194 ---------------------TS----FDR--------------PNLYYEVRR-KTPKILEDLLRFIRKEFKGKSGIIYC 233 (470)
T ss_pred ---------------------CC----CCC--------------CCcEEEEEe-CCccHHHHHHHHHHHhcCCCceEEEE
Confidence 00 000 000000110 111345566677663 4455669999
Q ss_pred cChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhh
Q psy1604 526 STIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHR 605 (693)
Q Consensus 526 ~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr 605 (693)
++++.++.++..|...++.+..+||+|++.+|..++++|++|+++|||||+++++|||+|++++||+|++|.|++.|+||
T Consensus 234 ~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr 313 (470)
T TIGR00614 234 PSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQE 313 (470)
T ss_pred CcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCcceEEEEeCCCC
Q psy1604 606 IGRTGRVGNKGRATSFYDPDQ 626 (693)
Q Consensus 606 ~GRagR~G~~G~~~~~~~~~~ 626 (693)
+|||||.|++|.|++|+++.+
T Consensus 314 ~GRaGR~G~~~~~~~~~~~~d 334 (470)
T TIGR00614 314 SGRAGRDGLPSECHLFYAPAD 334 (470)
T ss_pred hcCcCCCCCCceEEEEechhH
Confidence 999999999999999998653
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.3e-45 Score=413.27 Aligned_cols=329 Identities=20% Similarity=0.271 Sum_probs=246.4
Q ss_pred CCCHHHHHHHHh-CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcC
Q psy1604 204 GLREILVKNLKK-SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAP 282 (693)
Q Consensus 204 ~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~P 282 (693)
.....+...++. +||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. ...+|||+|
T Consensus 443 pw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------~GiTLVISP 508 (1195)
T PLN03137 443 PWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------PGITLVISP 508 (1195)
T ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------------CCcEEEEeC
Confidence 344556555554 69999999999999999999999999999999999999999842 125899999
Q ss_pred CHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHh------cCCcEEEechhhHHH---HHhcC-Cc-CCCceeE
Q psy1604 283 TRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLE------KGCNILVATMGRLKD---ILDRG-RI-SLASVRF 351 (693)
Q Consensus 283 tr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~------~~~~IlV~Tp~~L~~---~l~~~-~~-~l~~~~~ 351 (693)
+++|+.++...+.. .++....+.++.....+...+. ...+|+|+||++|.. ++..- .+ ....+.+
T Consensus 509 LiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Lsl 584 (1195)
T PLN03137 509 LVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLAR 584 (1195)
T ss_pred HHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccce
Confidence 99999866666554 3578888888887666554443 368999999999852 12211 11 2345889
Q ss_pred EEEccchhhhhCC--chHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEE
Q psy1604 352 VVLDEADRMLDMG--FLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFV 429 (693)
Q Consensus 352 lVlDEah~l~~~~--~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 429 (693)
|||||||++++++ |.+.+..+-.... ..+..++++||||++..++......+ . + ...
T Consensus 585 IVIDEAHcVSqWGhDFRpdYr~L~~Lr~--~fp~vPilALTATAT~~V~eDI~~~L-----------~---l--~~~--- 643 (1195)
T PLN03137 585 FVIDEAHCVSQWGHDFRPDYQGLGILKQ--KFPNIPVLALTATATASVKEDVVQAL-----------G---L--VNC--- 643 (1195)
T ss_pred eccCcchhhhhcccchHHHHHHHHHHHH--hCCCCCeEEEEecCCHHHHHHHHHHc-----------C---C--CCc---
Confidence 9999999999987 6666665421111 11367899999999887665322220 0 0 000
Q ss_pred EechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccch-hHHHH
Q psy1604 430 VLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQ-QKKKK 508 (693)
Q Consensus 430 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~ 508 (693)
..+... +. .+++. +..+... .....
T Consensus 644 ----------------------------------~vfr~S----f~--------------RpNL~--y~Vv~k~kk~le~ 669 (1195)
T PLN03137 644 ----------------------------------VVFRQS----FN--------------RPNLW--YSVVPKTKKCLED 669 (1195)
T ss_pred ----------------------------------EEeecc----cC--------------ccceE--EEEeccchhHHHH
Confidence 000000 00 00110 0111111 12345
Q ss_pred HHHHHhcc-CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCC
Q psy1604 509 LLELLREK-DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGI 587 (693)
Q Consensus 509 L~~~l~~~-~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v 587 (693)
+..++... .....||||.++..++.++..|...++.+..+||+|++.+|..++++|+.|+++|||||+++++|||+|+|
T Consensus 670 L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDV 749 (1195)
T PLN03137 670 IDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDV 749 (1195)
T ss_pred HHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCC
Confidence 66666543 35678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 588 RHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 588 ~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
++||||++|.|++.|+||+|||||.|++|.|++||...
T Consensus 750 R~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~ 787 (1195)
T PLN03137 750 RFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYS 787 (1195)
T ss_pred cEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHH
Confidence 99999999999999999999999999999999999854
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.2e-44 Score=404.12 Aligned_cols=327 Identities=19% Similarity=0.270 Sum_probs=245.4
Q ss_pred HHHHHHHHh-CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHH
Q psy1604 207 EILVKNLKK-SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRE 285 (693)
Q Consensus 207 ~~l~~~l~~-~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 285 (693)
+...+.|++ +||..|+|+|.++++.+++++|+++++|||+|||++|++|++.. ...+||++|+++
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------------~g~tlVisPl~s 76 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------------DGLTLVVSPLIS 76 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------------CCCEEEEecHHH
Confidence 333444443 69999999999999999999999999999999999999999842 125899999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhh
Q psy1604 286 LVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRML 361 (693)
Q Consensus 286 La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~ 361 (693)
|+.|+.+.+..+ ++....+.++.......... ....+++++||+++........+...++++|||||||++.
T Consensus 77 L~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~ 152 (607)
T PRK11057 77 LMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCIS 152 (607)
T ss_pred HHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccc
Confidence 999999988875 35566666665544433222 2357899999999874221122344578999999999999
Q ss_pred hCC--chHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhh
Q psy1604 362 DMG--FLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD 439 (693)
Q Consensus 362 ~~~--~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~ 439 (693)
+++ |.+.+..+-.... ..++.+++++|||++.......... + .+ ......
T Consensus 153 ~~G~~fr~~y~~L~~l~~--~~p~~~~v~lTAT~~~~~~~di~~~-----------l---~l--~~~~~~---------- 204 (607)
T PRK11057 153 QWGHDFRPEYAALGQLRQ--RFPTLPFMALTATADDTTRQDIVRL-----------L---GL--NDPLIQ---------- 204 (607)
T ss_pred cccCcccHHHHHHHHHHH--hCCCCcEEEEecCCChhHHHHHHHH-----------h---CC--CCeEEE----------
Confidence 876 5555544322111 1136789999999987654321111 0 00 000000
Q ss_pred cCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCC
Q psy1604 440 MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDED 519 (693)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~ 519 (693)
... . ..+++. +.......+...+..++......
T Consensus 205 --------------------------~~~-----~--------------~r~nl~--~~v~~~~~~~~~l~~~l~~~~~~ 237 (607)
T PRK11057 205 --------------------------ISS-----F--------------DRPNIR--YTLVEKFKPLDQLMRYVQEQRGK 237 (607)
T ss_pred --------------------------ECC-----C--------------CCCcce--eeeeeccchHHHHHHHHHhcCCC
Confidence 000 0 000000 01112233456677777777788
Q ss_pred cEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCCh
Q psy1604 520 GVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEI 599 (693)
Q Consensus 520 kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~ 599 (693)
++||||+++++++.++..|++.++.+..+|++|++.+|.++++.|+.|+.+|||||+++++|||+|+|++||+||+|.|.
T Consensus 238 ~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~ 317 (607)
T PRK11057 238 SGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 317 (607)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccccCCCcceEEEEeCCCC
Q psy1604 600 DEYVHRIGRTGRVGNKGRATSFYDPDQ 626 (693)
Q Consensus 600 ~~y~Qr~GRagR~G~~G~~~~~~~~~~ 626 (693)
++|+||+|||||.|.+|.|++|+++.+
T Consensus 318 ~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 318 ESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred HHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 999999999999999999999998754
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.3e-43 Score=411.41 Aligned_cols=358 Identities=23% Similarity=0.280 Sum_probs=252.9
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCH
Q psy1604 205 LREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTR 284 (693)
Q Consensus 205 l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr 284 (693)
|++.+.+.+++ +|..|||+|.++++.+++|+|++++||||||||++|++|+++.+....... ....++++||++||+
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~--~~~~~~~~LyIsPtr 94 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG--ELEDKVYCLYVSPLR 94 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc--CCCCCeEEEEEcCHH
Confidence 57777777665 799999999999999999999999999999999999999999987543211 012456899999999
Q ss_pred HHHHHHHHHHHH-------Hh----cCC-CeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCc--CCCcee
Q psy1604 285 ELVMQIHEVACK-------YA----YSS-VLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRI--SLASVR 350 (693)
Q Consensus 285 ~La~Q~~~~~~~-------~~----~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~--~l~~~~ 350 (693)
+|+.|+++.+.. +. ... .+++...+|+.+.....+.+.+.++|+|+||++|..++.+... .+.+++
T Consensus 95 aLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~ 174 (876)
T PRK13767 95 ALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVK 174 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCC
Confidence 999999876542 22 222 6788899999988888778888899999999999888765433 478999
Q ss_pred EEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEE
Q psy1604 351 FVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVV 430 (693)
Q Consensus 351 ~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 430 (693)
+|||||+|.+.+..+...+...+..+........|++++|||+++. ...+ .++..............
T Consensus 175 ~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va------------~~L~~~~~~~~~r~~~i 241 (876)
T PRK13767 175 WVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVA------------KFLVGYEDDGEPRDCEI 241 (876)
T ss_pred EEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHH------------HHhcCccccCCCCceEE
Confidence 9999999999987766665555443222112467999999998652 1111 11110000000000000
Q ss_pred echhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHH
Q psy1604 431 LDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLL 510 (693)
Q Consensus 431 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~ 510 (693)
.+ ... .....+.+... ..+................+.
T Consensus 242 v~-----------------------------------~~~---~k~~~i~v~~p-----~~~l~~~~~~~~~~~l~~~L~ 278 (876)
T PRK13767 242 VD-----------------------------------ARF---VKPFDIKVISP-----VDDLIHTPAEEISEALYETLH 278 (876)
T ss_pred Ec-----------------------------------cCC---CccceEEEecc-----CccccccccchhHHHHHHHHH
Confidence 00 000 00000000000 000000000000112233344
Q ss_pred HHHhccCCCcEEEEecChHhHHHHHHHHhhC------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCC
Q psy1604 511 ELLREKDEDGVIVFVSTIRNADFIACYLCET------EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDI 584 (693)
Q Consensus 511 ~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~------~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDi 584 (693)
++++ ..+++||||+++..|+.++..|++. +..+..+||+|++++|..+++.|++|+++|||||+++++||||
T Consensus 279 ~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDi 356 (876)
T PRK13767 279 ELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDI 356 (876)
T ss_pred HHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCC
Confidence 4443 3568999999999999999999763 4679999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhhhhhhhcccccC-CCcceEEEEeC
Q psy1604 585 KGIRHVINYDLPQEIDEYVHRIGRTGRV-GNKGRATSFYD 623 (693)
Q Consensus 585 p~v~~VI~~d~p~s~~~y~Qr~GRagR~-G~~G~~~~~~~ 623 (693)
|++++||+|+.|.+..+|+||+||+||. |..+.++++..
T Consensus 357 p~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 357 GYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred CCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999986 44455555554
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-43 Score=409.79 Aligned_cols=348 Identities=22% Similarity=0.281 Sum_probs=259.4
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhh-hhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE
Q psy1604 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPA-GLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV 277 (693)
Q Consensus 199 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~-il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v 277 (693)
.|++++|++.+++.+++.||.+|+|+|.++++. +++++|++++||||||||++|.+|+++.+.. +.++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----------~~ka 70 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----------GGKA 70 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----------CCcE
Confidence 367889999999999999999999999999998 6789999999999999999999999998842 2379
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccc
Q psy1604 278 IICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEA 357 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEa 357 (693)
||++|+++|+.|+++.++++.. .++++..++|+..... .....++|+|+||+++..++++....++++++||+||+
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~---~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~ 146 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRD---EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEV 146 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCccc---cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECc
Confidence 9999999999999999998753 4688888888765432 12345899999999999998876666889999999999
Q ss_pred hhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhh
Q psy1604 358 DRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRM 437 (693)
Q Consensus 358 h~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~ 437 (693)
|.+.+.++...++.++.+.... .+..|++++|||+++. .. +..|+....+. ...+.+.
T Consensus 147 H~l~d~~rg~~le~il~rl~~~-~~~~qii~lSATl~n~-~~------------la~wl~~~~~~-~~~rpv~------- 204 (737)
T PRK02362 147 HLIDSANRGPTLEVTLAKLRRL-NPDLQVVALSATIGNA-DE------------LADWLDAELVD-SEWRPID------- 204 (737)
T ss_pred cccCCCcchHHHHHHHHHHHhc-CCCCcEEEEcccCCCH-HH------------HHHHhCCCccc-CCCCCCC-------
Confidence 9999888888888776553321 2468999999998752 11 22222211000 0000000
Q ss_pred hhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccC
Q psy1604 438 LDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKD 517 (693)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~ 517 (693)
+. ..+.... .. ...+....+...........+.+.+. .
T Consensus 205 ------------------------------------l~-~~v~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 242 (737)
T PRK02362 205 ------------------------------------LR-EGVFYGG-AI--HFDDSQREVEVPSKDDTLNLVLDTLE--E 242 (737)
T ss_pred ------------------------------------Ce-eeEecCC-ee--ccccccccCCCccchHHHHHHHHHHH--c
Confidence 00 0000000 00 00000000000011223344444443 5
Q ss_pred CCcEEEEecChHhHHHHHHHHhhC------------------------------------CCceEEecCCCCHHHHHHHH
Q psy1604 518 EDGVIVFVSTIRNADFIACYLCET------------------------------------EIATTSIHGSRLQSQREQAI 561 (693)
Q Consensus 518 ~~kvLVF~~s~~~a~~l~~~L~~~------------------------------------~~~v~~lhg~~~~~~R~~~~ 561 (693)
.+++||||++++.|+.++..|... ...+..+|++|++.+|..++
T Consensus 243 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve 322 (737)
T PRK02362 243 GGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVE 322 (737)
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHH
Confidence 678999999999999988887542 13578999999999999999
Q ss_pred HHHhcCCCcEEEEeCcccccCCCCCCCEEEE----cC-----CCCChhhhhhhhcccccCCCc--ceEEEEeCCC
Q psy1604 562 HDFKTKKMKVLVATAVASRGLDIKGIRHVIN----YD-----LPQEIDEYVHRIGRTGRVGNK--GRATSFYDPD 625 (693)
Q Consensus 562 ~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~----~d-----~p~s~~~y~Qr~GRagR~G~~--G~~~~~~~~~ 625 (693)
+.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.|.+ |.++++....
T Consensus 323 ~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 323 DAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999999997 76 588999999999999999875 8999998643
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.4e-42 Score=393.14 Aligned_cols=317 Identities=21% Similarity=0.303 Sum_probs=244.8
Q ss_pred CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 216 SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 216 ~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
+||.+++|+|.++++.+++|+|+++++|||+|||++|++|++.. ...++|++|+++|+.|+.+.+.
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------------~g~~lVisPl~sL~~dq~~~l~ 74 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------------KGLTVVISPLISLMKDQVDQLR 74 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------------CCcEEEEcCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999998732 1257999999999999999888
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHH----HhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCC--chHHH
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQ----LEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG--FLGDI 369 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~----~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~--~~~~i 369 (693)
.+ ++.+..+.++......... .....+|+++||++|........+...++++|||||||++.+++ |.+.+
T Consensus 75 ~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 75 AA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred Hc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 75 4667777777665543332 23468999999999965333334456789999999999999876 55655
Q ss_pred HHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHH
Q psy1604 370 QHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHV 449 (693)
Q Consensus 370 ~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 449 (693)
..+...... .+..+++++|||++..+....... +.. . ...
T Consensus 151 ~~l~~l~~~--~~~~~vi~lTAT~~~~~~~~i~~~-----------l~~---~--~~~---------------------- 190 (591)
T TIGR01389 151 QRLGSLAER--FPQVPRIALTATADAETRQDIREL-----------LRL---A--DAN---------------------- 190 (591)
T ss_pred HHHHHHHHh--CCCCCEEEEEeCCCHHHHHHHHHH-----------cCC---C--CCC----------------------
Confidence 554332111 124459999999987655422211 000 0 000
Q ss_pred hhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChH
Q psy1604 450 MQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIR 529 (693)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~ 529 (693)
..... .. .+++. +.......+...+.+++......++||||+++.
T Consensus 191 --------------~~~~~-----~~--------------r~nl~--~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~ 235 (591)
T TIGR01389 191 --------------EFITS-----FD--------------RPNLR--FSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRK 235 (591)
T ss_pred --------------eEecC-----CC--------------CCCcE--EEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHH
Confidence 00000 00 00010 111123345677788887766788999999999
Q ss_pred hHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhccc
Q psy1604 530 NADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRT 609 (693)
Q Consensus 530 ~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRa 609 (693)
.++.+++.|...++++..+|++|+..+|+.+++.|++|+++|||||+++++|||+|++++||+|++|.|.+.|+|++|||
T Consensus 236 ~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRa 315 (591)
T TIGR01389 236 KVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRA 315 (591)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEEeCCC
Q psy1604 610 GRVGNKGRATSFYDPD 625 (693)
Q Consensus 610 gR~G~~G~~~~~~~~~ 625 (693)
||.|+.+.|++||.+.
T Consensus 316 GR~G~~~~~il~~~~~ 331 (591)
T TIGR01389 316 GRDGLPAEAILLYSPA 331 (591)
T ss_pred cCCCCCceEEEecCHH
Confidence 9999999999998854
No 43
>KOG0329|consensus
Probab=100.00 E-value=4.4e-44 Score=333.88 Aligned_cols=336 Identities=29% Similarity=0.503 Sum_probs=277.4
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV 277 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v 277 (693)
..|.+.-|.|++++++-..||++|+.+|.++||...-|.|++.+|..|.|||.+|.+..|+++..-++ ...+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g--------~vsv 113 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDG--------QVSV 113 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCC--------eEEE
Confidence 35888899999999999999999999999999999999999999999999999999999998855433 3479
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcC-CCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEcc
Q psy1604 278 IICAPTRELVMQIHEVACKYAYS-SVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 356 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 356 (693)
|++|.||+||-|+.++..+|.+. +.+++.+.+||.+.......+.+-++|+|+||++++.+.+++.+++++++++|+||
T Consensus 114 lvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDE 193 (387)
T KOG0329|consen 114 LVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDE 193 (387)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhh
Confidence 99999999999999998888754 56899999999998888888888999999999999999999999999999999999
Q ss_pred chhhhhC-CchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhh
Q psy1604 357 ADRMLDM-GFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 435 (693)
Q Consensus 357 ah~l~~~-~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~ 435 (693)
||.|++. ..+.++..|+...+ ...|+++||||++++++....+|+-.. .+..+-|+..
T Consensus 194 cdkmle~lDMrRDvQEifr~tp----~~KQvmmfsatlskeiRpvC~kFmQdP-----------------mEi~vDdE~K 252 (387)
T KOG0329|consen 194 CDKMLEQLDMRRDVQEIFRMTP----HEKQVMMFSATLSKEIRPVCHKFMQDP-----------------MEIFVDDEAK 252 (387)
T ss_pred HHHHHHHHHHHHHHHHHhhcCc----ccceeeeeeeecchhhHHHHHhhhcCc-----------------hhhhccchhh
Confidence 9999864 56777788876532 588999999999999888776662111 1111111111
Q ss_pred hhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc
Q psy1604 436 RMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE 515 (693)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~ 515 (693)
.. ...+.|.+..+.+.+|...|.++|..
T Consensus 253 Lt----------------------------------------------------LHGLqQ~YvkLke~eKNrkl~dLLd~ 280 (387)
T KOG0329|consen 253 LT----------------------------------------------------LHGLQQYYVKLKENEKNRKLNDLLDV 280 (387)
T ss_pred hh----------------------------------------------------hhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 10 01122333345566777788888877
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCC
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDL 595 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~ 595 (693)
..-++++||+.+... | . | +.+ +|||++++||+||..++.|||||+
T Consensus 281 LeFNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgmdiervNi~~NYdm 325 (387)
T KOG0329|consen 281 LEFNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGMDIERVNIVFNYDM 325 (387)
T ss_pred hhhcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhccccCcccceeeeccCC
Confidence 778899999988664 1 0 3 123 899999999999999999999999
Q ss_pred CCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHH
Q psy1604 596 PQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFL 649 (693)
Q Consensus 596 p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l 649 (693)
|.+.++|+||.|||||.|.+|.++.|+..++|..++..+.+.+.-...++|+..
T Consensus 326 p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpdei 379 (387)
T KOG0329|consen 326 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDEI 379 (387)
T ss_pred CCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCccc
Confidence 999999999999999999999999999988898899888888887777888764
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.7e-41 Score=377.97 Aligned_cols=317 Identities=18% Similarity=0.219 Sum_probs=232.2
Q ss_pred CCCCCCCHHHHhhhhhhhcCC-CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCC-eEEEEcCCHHHHHHHHHH
Q psy1604 216 SNYTKPTPIQKYAIPAGLEGR-DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQP-EVIICAPTRELVMQIHEV 293 (693)
Q Consensus 216 ~g~~~p~~~Q~~ai~~il~g~-~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~-~vLil~Ptr~La~Q~~~~ 293 (693)
.||. |||||.++++.++.|+ ++++++|||||||.+|.++++.. ... ...+ ++++++|||+|+.|+++.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--------~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--------AKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--------ccccceEEEeCchHHHHHHHHHH
Confidence 4887 9999999999999998 67888999999999776665532 111 1223 445577999999999999
Q ss_pred HHHHhcCC-----------------------CeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCc------
Q psy1604 294 ACKYAYSS-----------------------VLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRI------ 344 (693)
Q Consensus 294 ~~~~~~~~-----------------------~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~------ 344 (693)
+.++.... .+++..++||.+...+...+..+++|+|+|+ +++.++.+
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~ 157 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGC 157 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccccc
Confidence 99988643 4889999999999888888889999999995 44444433
Q ss_pred ----------CCCceeEEEEccchhhhhCCchHHHHHHhccCCCCC-CCCcceEEeeccCchhHHhhhhhhhhhchhhhH
Q psy1604 345 ----------SLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPD-VANRQTLMFSATFPETIQKKGCNILVATMGRLK 413 (693)
Q Consensus 345 ----------~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~-~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~ 413 (693)
.+.++++||||||| ++++|...+..|+.....+. ...+|+++||||++.++..+...+..
T Consensus 158 ~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~------- 228 (844)
T TIGR02621 158 GFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA------- 228 (844)
T ss_pred ccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc-------
Confidence 26789999999999 68999999999998642222 22369999999998766544322200
Q ss_pred HHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccce
Q psy1604 414 DILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDV 493 (693)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~ 493 (693)
.... +.+.........+
T Consensus 229 ----------~p~~-----------------------------------------------------i~V~~~~l~a~ki 245 (844)
T TIGR02621 229 ----------EDYK-----------------------------------------------------HPVLKKRLAAKKI 245 (844)
T ss_pred ----------CCce-----------------------------------------------------eecccccccccce
Confidence 0000 0000000001111
Q ss_pred eEEEEEccchhHHHHHHHHH---hccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHH-----HHHHHHh
Q psy1604 494 VQTILEVPKQQKKKKLLELL---REKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQRE-----QAIHDFK 565 (693)
Q Consensus 494 ~~~~~~~~~~~k~~~L~~~l---~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~-----~~~~~F~ 565 (693)
.+ +.......|...+...+ .....+++||||++++.++.+++.|++.++ ..+||+|++.+|+ +++++|+
T Consensus 246 ~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk 322 (844)
T TIGR02621 246 VK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFL 322 (844)
T ss_pred EE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHh
Confidence 12 12223333443333222 124567899999999999999999998876 8999999999999 8899998
Q ss_pred c----CC-------CcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceE-EEEeCC
Q psy1604 566 T----KK-------MKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRA-TSFYDP 624 (693)
Q Consensus 566 ~----g~-------~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~-~~~~~~ 624 (693)
+ |. .+|||||+++++||||+. ++||++..| .++|+||+||+||.|+.|.+ +.++++
T Consensus 323 ~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 323 PQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred ccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 7 44 689999999999999986 899998777 68999999999999986443 566543
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1e-41 Score=379.19 Aligned_cols=349 Identities=22% Similarity=0.264 Sum_probs=273.8
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCC-CCcccCCCCCCeEEEEcCC
Q psy1604 205 LREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESP-GELVTGYCAQPEVIICAPT 283 (693)
Q Consensus 205 l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~-~~~~~~~~~~~~vLil~Pt 283 (693)
|++.+.+.++.. |..|||.|.+|+|.+.+|+|+|+.||||||||+++.+|++..|...+ ... ..+..+|+++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~----~~~i~~lYIsPL 82 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKL----EDGIYALYISPL 82 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCC----CCceEEEEeCcH
Confidence 789999999988 99999999999999999999999999999999999999999999884 221 456789999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC--cCCCceeEEEEccchhhh
Q psy1604 284 RELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR--ISLASVRFVVLDEADRML 361 (693)
Q Consensus 284 r~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~--~~l~~~~~lVlDEah~l~ 361 (693)
|+|.+++.+.+..+....++.+...+|+.+.....++..+.+||+|+||+.|.-++.... -.|.+++++||||.|.+.
T Consensus 83 kALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~ 162 (814)
T COG1201 83 KALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALA 162 (814)
T ss_pred HHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhh
Confidence 999999999999999999999999999999999999999999999999999988886543 258899999999999999
Q ss_pred hCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcC
Q psy1604 362 DMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG 441 (693)
Q Consensus 362 ~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~ 441 (693)
+...+.++...+.++..-.. +.|++++|||..+. ..+..++..... ..+.+....
T Consensus 163 ~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-------------~~varfL~g~~~---~~~Iv~~~~-------- 217 (814)
T COG1201 163 ESKRGVQLALSLERLRELAG-DFQRIGLSATVGPP-------------EEVAKFLVGFGD---PCEIVDVSA-------- 217 (814)
T ss_pred ccccchhhhhhHHHHHhhCc-ccEEEeehhccCCH-------------HHHHHHhcCCCC---ceEEEEccc--------
Confidence 88777777766655443332 78999999997431 122222211110 000000000
Q ss_pred cccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcE
Q psy1604 442 FLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGV 521 (693)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kv 521 (693)
.....+.+-.......+. ..........+.++++++ ..+
T Consensus 218 ----------------------------------~k~~~i~v~~p~~~~~~~-----~~~~~~~~~~i~~~v~~~--~tt 256 (814)
T COG1201 218 ----------------------------------AKKLEIKVISPVEDLIYD-----EELWAALYERIAELVKKH--RTT 256 (814)
T ss_pred ----------------------------------CCcceEEEEecCCccccc-----cchhHHHHHHHHHHHhhc--CcE
Confidence 000000000000000000 111223445556666543 379
Q ss_pred EEEecChHhHHHHHHHHhhCC-CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChh
Q psy1604 522 IVFVSTIRNADFIACYLCETE-IATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEID 600 (693)
Q Consensus 522 LVF~~s~~~a~~l~~~L~~~~-~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~ 600 (693)
|||+||+..++.++..|++.+ ..+..+||.++.++|..+.++|++|+.+++|||+.++-||||.+++.||+|..|++.+
T Consensus 257 LIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~ 336 (814)
T COG1201 257 LIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVN 336 (814)
T ss_pred EEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHH
Confidence 999999999999999999887 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccc-CCCcceEEEEeCC
Q psy1604 601 EYVHRIGRTGR-VGNKGRATSFYDP 624 (693)
Q Consensus 601 ~y~Qr~GRagR-~G~~G~~~~~~~~ 624 (693)
.++||+||+|+ .|...+.+++...
T Consensus 337 r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 337 RFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HHhHhccccccccCCcccEEEEecC
Confidence 99999999985 5666777777663
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.4e-41 Score=390.34 Aligned_cols=343 Identities=21% Similarity=0.284 Sum_probs=255.7
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhh-hhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE
Q psy1604 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPA-GLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV 277 (693)
Q Consensus 199 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~-il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v 277 (693)
+|+++++++.+.+.+++.||.+|+|+|.++++. +++++|+++++|||||||++|.+|+++.+... +.++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~ 71 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKA 71 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeE
Confidence 467889999999999999999999999999986 78999999999999999999999999988643 2379
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccc
Q psy1604 278 IICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEA 357 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEa 357 (693)
|||+|+++|+.|+++.+.++. ..++++..++|+..... .....++|+|+||+++..++.+....++++++||+||+
T Consensus 72 l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~---~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~ 147 (720)
T PRK00254 72 VYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTD---EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEI 147 (720)
T ss_pred EEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCch---hhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCc
Confidence 999999999999999998874 35788888888876432 22356899999999999988876667889999999999
Q ss_pred hhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhh
Q psy1604 358 DRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRM 437 (693)
Q Consensus 358 h~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~ 437 (693)
|.+.+.++...+..++.... ...|++++|||+++. ..++. |+....+. ...+.
T Consensus 148 H~l~~~~rg~~le~il~~l~----~~~qiI~lSATl~n~-~~la~------------wl~~~~~~-~~~rp--------- 200 (720)
T PRK00254 148 HLIGSYDRGATLEMILTHML----GRAQILGLSATVGNA-EELAE------------WLNAELVV-SDWRP--------- 200 (720)
T ss_pred CccCCccchHHHHHHHHhcC----cCCcEEEEEccCCCH-HHHHH------------HhCCcccc-CCCCC---------
Confidence 99998888888888887643 367999999999752 22222 11110000 00000
Q ss_pred hhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccC
Q psy1604 438 LDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKD 517 (693)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~ 517 (693)
.+....+ ..+.+...... . .... .......+.+.++ .
T Consensus 201 --------------------v~l~~~~---------~~~~~~~~~~~-------~----~~~~-~~~~~~~~~~~i~--~ 237 (720)
T PRK00254 201 --------------------VKLRKGV---------FYQGFLFWEDG-------K----IERF-PNSWESLVYDAVK--K 237 (720)
T ss_pred --------------------CcceeeE---------ecCCeeeccCc-------c----hhcc-hHHHHHHHHHHHH--h
Confidence 0000000 00000000000 0 0000 0112233444444 4
Q ss_pred CCcEEEEecChHhHHHHHHHHhhC---------------------------------CCceEEecCCCCHHHHHHHHHHH
Q psy1604 518 EDGVIVFVSTIRNADFIACYLCET---------------------------------EIATTSIHGSRLQSQREQAIHDF 564 (693)
Q Consensus 518 ~~kvLVF~~s~~~a~~l~~~L~~~---------------------------------~~~v~~lhg~~~~~~R~~~~~~F 564 (693)
.+++||||++++.|+.++..|... ...+.++|++|++.+|..+++.|
T Consensus 238 ~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F 317 (720)
T PRK00254 238 GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAF 317 (720)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHH
Confidence 678999999999998877666321 23588999999999999999999
Q ss_pred hcCCCcEEEEeCcccccCCCCCCCEEEE-------cCCCC-ChhhhhhhhcccccCC--CcceEEEEeCCC
Q psy1604 565 KTKKMKVLVATAVASRGLDIKGIRHVIN-------YDLPQ-EIDEYVHRIGRTGRVG--NKGRATSFYDPD 625 (693)
Q Consensus 565 ~~g~~~ILVaT~v~~~GiDip~v~~VI~-------~d~p~-s~~~y~Qr~GRagR~G--~~G~~~~~~~~~ 625 (693)
++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+|||||.| ..|.+++|...+
T Consensus 318 ~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 318 REGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred HCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 9999999999999999999999999994 55543 5679999999999975 679999998754
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.7e-39 Score=371.72 Aligned_cols=320 Identities=20% Similarity=0.210 Sum_probs=236.0
Q ss_pred CHHHHHHHHh-CCCCCCCHHHHhhhhhhhcC------CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEE
Q psy1604 206 REILVKNLKK-SNYTKPTPIQKYAIPAGLEG------RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVI 278 (693)
Q Consensus 206 ~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~g------~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vL 278 (693)
+..+.+.+.+ .+| .||++|.++|+.++++ +|.+++++||||||.+|+++++..+.. +++++
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----------g~qvl 504 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----------GKQVA 504 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----------CCeEE
Confidence 4455555544 577 5999999999999875 699999999999999999999988743 34799
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH---hc-CCcEEEechhhHHHHHhcCCcCCCceeEEEE
Q psy1604 279 ICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL---EK-GCNILVATMGRLKDILDRGRISLASVRFVVL 354 (693)
Q Consensus 279 il~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~---~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVl 354 (693)
||+||++||.|+++.+.++....++++..++++.+..++...+ .. .++|+|+||..+ +..+.+.++++|||
T Consensus 505 vLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVI 579 (926)
T TIGR00580 505 VLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLII 579 (926)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEe
Confidence 9999999999999999998877788888888877655444333 33 589999999433 23567899999999
Q ss_pred ccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechh
Q psy1604 355 DEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEA 434 (693)
Q Consensus 355 DEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~ 434 (693)
||+|++.. .....+... + .+.|+++||||+.+......... ..+...
T Consensus 580 DEahrfgv-----~~~~~L~~~--~--~~~~vL~~SATpiprtl~~~l~g------------------~~d~s~------ 626 (926)
T TIGR00580 580 DEEQRFGV-----KQKEKLKEL--R--TSVDVLTLSATPIPRTLHMSMSG------------------IRDLSI------ 626 (926)
T ss_pred ecccccch-----hHHHHHHhc--C--CCCCEEEEecCCCHHHHHHHHhc------------------CCCcEE------
Confidence 99998632 223333321 1 36799999999765432221000 000000
Q ss_pred hhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHh
Q psy1604 435 DRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLR 514 (693)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~ 514 (693)
+..... ....+...+...........+...+
T Consensus 627 ----------------------------------------------I~~~p~--~R~~V~t~v~~~~~~~i~~~i~~el- 657 (926)
T TIGR00580 627 ----------------------------------------------IATPPE--DRLPVRTFVMEYDPELVREAIRREL- 657 (926)
T ss_pred ----------------------------------------------EecCCC--CccceEEEEEecCHHHHHHHHHHHH-
Confidence 000000 0000111111111111122222223
Q ss_pred ccCCCcEEEEecChHhHHHHHHHHhhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEE
Q psy1604 515 EKDEDGVIVFVSTIRNADFIACYLCET--EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVIN 592 (693)
Q Consensus 515 ~~~~~kvLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~ 592 (693)
..+++++|||++++.++.+++.|++. ++++..+||+|++.+|++++++|++|+.+|||||+++++|||+|++++||+
T Consensus 658 -~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 658 -LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII 736 (926)
T ss_pred -HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE
Confidence 24678999999999999999999874 788999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-ChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 593 YDLPQ-EIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 593 ~d~p~-s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
++.|. +..+|.||+||+||.|+.|.|++++.+.
T Consensus 737 ~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 737 ERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99875 6789999999999999999999999754
No 48
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=6.6e-40 Score=376.92 Aligned_cols=340 Identities=20% Similarity=0.246 Sum_probs=248.0
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEE
Q psy1604 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVI 278 (693)
Q Consensus 199 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vL 278 (693)
.|.+++|++.+++.+...+|. |+++|.++++.+.+++++++++|||||||+++.+++++.+... .++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-----------~k~v 69 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-----------LKSI 69 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-----------CcEE
Confidence 367788999999999999987 9999999999999999999999999999999999999887542 3689
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccch
Q psy1604 279 ICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 358 (693)
Q Consensus 279 il~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah 358 (693)
+++|+++|+.|+++.+.++. ..+.++...+|+..... ...+.++|+|+||+++..++.+....+.++++||+||+|
T Consensus 70 ~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~---~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH 145 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPP---DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIH 145 (674)
T ss_pred EEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCCh---hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecch
Confidence 99999999999999998864 35677878888765432 223468999999999999888776668899999999999
Q ss_pred hhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhh
Q psy1604 359 RMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRML 438 (693)
Q Consensus 359 ~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~ 438 (693)
.+.+.++...++.++...... ..+.|++++|||+++. ..++ .|+....+.. .
T Consensus 146 ~l~d~~rg~~le~ll~~~~~~-~~~~riI~lSATl~n~-~~la------------~wl~~~~~~~-~------------- 197 (674)
T PRK01172 146 IIGDEDRGPTLETVLSSARYV-NPDARILALSATVSNA-NELA------------QWLNASLIKS-N------------- 197 (674)
T ss_pred hccCCCccHHHHHHHHHHHhc-CcCCcEEEEeCccCCH-HHHH------------HHhCCCccCC-C-------------
Confidence 998888888777776543221 1368999999998652 2222 1211100000 0
Q ss_pred hcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc--c
Q psy1604 439 DMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE--K 516 (693)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~--~ 516 (693)
.+...+........ +.+.......+ ..+..++.. .
T Consensus 198 -----------------------------------~r~vpl~~~i~~~~-------~~~~~~~~~~~-~~~~~~i~~~~~ 234 (674)
T PRK01172 198 -----------------------------------FRPVPLKLGILYRK-------RLILDGYERSQ-VDINSLIKETVN 234 (674)
T ss_pred -----------------------------------CCCCCeEEEEEecC-------eeeeccccccc-ccHHHHHHHHHh
Confidence 00000000000000 00000000000 011222222 3
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhC-------------------------CCceEEecCCCCHHHHHHHHHHHhcCCCcE
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCET-------------------------EIATTSIHGSRLQSQREQAIHDFKTKKMKV 571 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~-------------------------~~~v~~lhg~~~~~~R~~~~~~F~~g~~~I 571 (693)
.++++||||++++.++.++..|.+. ...+..+|++|++++|..+++.|++|.++|
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~V 314 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKV 314 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 4678999999999999999888653 124788999999999999999999999999
Q ss_pred EEEeCcccccCCCCCCCEEEEcCC---------CCChhhhhhhhcccccCCC--cceEEEEeCCCC
Q psy1604 572 LVATAVASRGLDIKGIRHVINYDL---------PQEIDEYVHRIGRTGRVGN--KGRATSFYDPDQ 626 (693)
Q Consensus 572 LVaT~v~~~GiDip~v~~VI~~d~---------p~s~~~y~Qr~GRagR~G~--~G~~~~~~~~~~ 626 (693)
||||+++++|+|+|+. .||++|. |.+..+|.||+|||||.|. .|.+++++...+
T Consensus 315 LvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 315 IVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred EEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 9999999999999986 4555443 4588899999999999985 577888876443
No 49
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.5e-39 Score=332.07 Aligned_cols=386 Identities=24% Similarity=0.255 Sum_probs=257.2
Q ss_pred CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 217 NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
+.-.++.||.......+.+ |+|++.|||.|||+++++.+..++...+ + ++|+++||+.|+.|.++.|.+
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~---------~-kvlfLAPTKPLV~Qh~~~~~~ 80 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG---------G-KVLFLAPTKPLVLQHAEFCRK 80 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC---------C-eEEEecCCchHHHHHHHHHHH
Confidence 4457899999998888776 9999999999999999999988887654 2 799999999999999999999
Q ss_pred HhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccC
Q psy1604 297 YAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHS 376 (693)
Q Consensus 297 ~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~ 376 (693)
+...+.-.++.+.|.....+ +...+...+|+|+||+.+.+.+..+.+++.++.+||||||||-.....+..+.+.+...
T Consensus 81 v~~ip~~~i~~ltGev~p~~-R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~ 159 (542)
T COG1111 81 VTGIPEDEIAALTGEVRPEE-REELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS 159 (542)
T ss_pred HhCCChhheeeecCCCChHH-HHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHh
Confidence 98877778888888777664 45667778999999999999999999999999999999999987776666666644322
Q ss_pred CCCCCCCcceEEeeccCchhHHhh---hhhh-----hhhchhh--hHHHHhhccccccceeEEEechhhh----------
Q psy1604 377 TMPDVANRQTLMFSATFPETIQKK---GCNI-----LVATMGR--LKDILDRGRISLASVRFVVLDEADR---------- 436 (693)
Q Consensus 377 ~~~~~~~~q~lllSAT~~~~~~~~---~~~~-----~~~~~~~--l~~~l~~~~~~~~~~~~~~~d~~~~---------- 436 (693)
..++.+++||||+....... ...+ .+.+... +...+. ...++++.++....
T Consensus 160 ----~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~-----~~kve~ikV~lp~e~~~ir~~l~~ 230 (542)
T COG1111 160 ----AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVK-----KIKVEWIKVDLPEEIKEIRDLLRD 230 (542)
T ss_pred ----ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhc-----cceeEEEeccCcHHHHHHHHHHHH
Confidence 23678999999985443332 1111 0111100 111111 11122222111110
Q ss_pred --------hhhcCcccchh--------HHh-hc---ccCCccccccceeecccC--------------chhhhcceEE--
Q psy1604 437 --------MLDMGFLGDIQ--------HVM-QH---STMPDVANRQTLMFSATF--------------PETIQKNYIF-- 480 (693)
Q Consensus 437 --------~~~~~~~~~~~--------~~~-~~---~~~~~~~~~~~~~~~~t~--------------~~~l~~~~~~-- 480 (693)
+.+.++..... ... .. .........+.+..-+.. -..+ ..|+.
T Consensus 231 ~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~-~~Yl~~l 309 (542)
T COG1111 231 ALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPF-YQYLEKL 309 (542)
T ss_pred HHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH-HHHHHHH
Confidence 00111110000 000 00 000000000000000000 0000 00000
Q ss_pred ---EEeecccc-----cccc-------eeEEEEEccchhHHHHHHHHHhc----cCCCcEEEEecChHhHHHHHHHHhhC
Q psy1604 481 ---IAVGIIGG-----ASTD-------VVQTILEVPKQQKKKKLLELLRE----KDEDGVIVFVSTIRNADFIACYLCET 541 (693)
Q Consensus 481 ---~~~~~~~~-----~~~~-------~~~~~~~~~~~~k~~~L~~~l~~----~~~~kvLVF~~s~~~a~~l~~~L~~~ 541 (693)
...+.... ..+. .......-....|+..+.+++++ ....++|||++.+++++.+.++|.+.
T Consensus 310 ~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~ 389 (542)
T COG1111 310 EEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKI 389 (542)
T ss_pred HHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhc
Confidence 00000000 0000 00001111234566666666554 66789999999999999999999998
Q ss_pred CCceE-Ee--------cCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccC
Q psy1604 542 EIATT-SI--------HGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRV 612 (693)
Q Consensus 542 ~~~v~-~l--------hg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 612 (693)
+..+. .+ ..+|+|.++.+++++|++|.++|||||+++++|||||+++.||+|++-.|+..++||.|||||.
T Consensus 390 ~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~ 469 (542)
T COG1111 390 GIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK 469 (542)
T ss_pred CCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC
Confidence 87763 22 2479999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcceEEEEeCCC
Q psy1604 613 GNKGRATSFYDPD 625 (693)
Q Consensus 613 G~~G~~~~~~~~~ 625 (693)
++|.++++++.+
T Consensus 470 -r~Grv~vLvt~g 481 (542)
T COG1111 470 -RKGRVVVLVTEG 481 (542)
T ss_pred -CCCeEEEEEecC
Confidence 999999999865
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=7.9e-39 Score=362.79 Aligned_cols=319 Identities=18% Similarity=0.248 Sum_probs=232.6
Q ss_pred HHHHHHHHhCCCCCCCHHHHhhhhhhhcC------CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEE
Q psy1604 207 EILVKNLKKSNYTKPTPIQKYAIPAGLEG------RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIIC 280 (693)
Q Consensus 207 ~~l~~~l~~~g~~~p~~~Q~~ai~~il~g------~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil 280 (693)
..+.+.+...+| +||++|+++++.++++ .+.+++++||||||++|++|++..+.. +.+++|+
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----------g~qvlil 290 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----------GYQVALM 290 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEE
Confidence 345566677788 7999999999999875 368999999999999999999987742 3479999
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCceeEEEEcc
Q psy1604 281 APTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 356 (693)
Q Consensus 281 ~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 356 (693)
+||++||.|+++.+.++....++++..++|+.........+ ...++|+|+||+.+.+ .+.+.++++|||||
T Consensus 291 aPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDE 365 (630)
T TIGR00643 291 APTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDE 365 (630)
T ss_pred CCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEec
Confidence 99999999999999999888889999999998765533332 2357999999998754 35678999999999
Q ss_pred chhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 357 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
+|++.... ...+..... .....++++||||+.+....+...- ......++
T Consensus 366 aH~fg~~q----r~~l~~~~~--~~~~~~~l~~SATp~prtl~l~~~~--------------------~l~~~~i~---- 415 (630)
T TIGR00643 366 QHRFGVEQ----RKKLREKGQ--GGFTPHVLVMSATPIPRTLALTVYG--------------------DLDTSIID---- 415 (630)
T ss_pred hhhccHHH----HHHHHHhcc--cCCCCCEEEEeCCCCcHHHHHHhcC--------------------Ccceeeec----
Confidence 99864321 111221111 0125789999999754322110000 00000000
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc-
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE- 515 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~- 515 (693)
.++. ....+...+. ... ....+++.+..
T Consensus 416 --------------------------------~~p~----------------~r~~i~~~~~--~~~-~~~~~~~~i~~~ 444 (630)
T TIGR00643 416 --------------------------------ELPP----------------GRKPITTVLI--KHD-EKDIVYEFIEEE 444 (630)
T ss_pred --------------------------------cCCC----------------CCCceEEEEe--Ccc-hHHHHHHHHHHH
Confidence 0000 0000111111 111 12344444443
Q ss_pred -cCCCcEEEEecCh--------HhHHHHHHHHhhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCC
Q psy1604 516 -KDEDGVIVFVSTI--------RNADFIACYLCET--EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDI 584 (693)
Q Consensus 516 -~~~~kvLVF~~s~--------~~a~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDi 584 (693)
....+++|||+.. ..++.+++.|.+. ++.+..+||+|++.+|.+++++|++|+.+|||||+++++|||+
T Consensus 445 l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDi 524 (630)
T TIGR00643 445 IAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDV 524 (630)
T ss_pred HHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCccc
Confidence 3567899999875 4566777777653 6789999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCC-ChhhhhhhhcccccCCCcceEEEEeC
Q psy1604 585 KGIRHVINYDLPQ-EIDEYVHRIGRTGRVGNKGRATSFYD 623 (693)
Q Consensus 585 p~v~~VI~~d~p~-s~~~y~Qr~GRagR~G~~G~~~~~~~ 623 (693)
|++++||+++.|+ +.+.|.||+||+||.|++|.|++++.
T Consensus 525 P~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 525 PNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999986 68889999999999999999999994
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.3e-38 Score=361.20 Aligned_cols=312 Identities=19% Similarity=0.257 Sum_probs=229.7
Q ss_pred HHHHhCCCCCCCHHHHhhhhhhhcC------CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCH
Q psy1604 211 KNLKKSNYTKPTPIQKYAIPAGLEG------RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTR 284 (693)
Q Consensus 211 ~~l~~~g~~~p~~~Q~~ai~~il~g------~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr 284 (693)
+.+...+| .||++|+++++.+.++ .+.+++++||||||++|++|++..+. .+.+++|++||+
T Consensus 253 ~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----------~g~q~lilaPT~ 320 (681)
T PRK10917 253 KFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----------AGYQAALMAPTE 320 (681)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----------cCCeEEEEeccH
Confidence 33345577 6999999999999876 48999999999999999999998773 245799999999
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHH---Hhc-CCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhh
Q psy1604 285 ELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQ---LEK-GCNILVATMGRLKDILDRGRISLASVRFVVLDEADRM 360 (693)
Q Consensus 285 ~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~---~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l 360 (693)
+||.|+++.++++....++++..++|+.+....... +.. .++|+|+||+.+.+ .+.+.++++||+||+|++
T Consensus 321 ~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrf 395 (681)
T PRK10917 321 ILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRF 395 (681)
T ss_pred HHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhh
Confidence 999999999999988888999999999886544333 333 59999999988743 456789999999999987
Q ss_pred hhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhc
Q psy1604 361 LDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDM 440 (693)
Q Consensus 361 ~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~ 440 (693)
.... ...+... ....++++||||+.+....+... .......+++
T Consensus 396 g~~q-----r~~l~~~----~~~~~iL~~SATp~prtl~~~~~--------------------g~~~~s~i~~------- 439 (681)
T PRK10917 396 GVEQ-----RLALREK----GENPHVLVMTATPIPRTLAMTAY--------------------GDLDVSVIDE------- 439 (681)
T ss_pred hHHH-----HHHHHhc----CCCCCEEEEeCCCCHHHHHHHHc--------------------CCCceEEEec-------
Confidence 4221 2222211 12578999999975432211100 0000000000
Q ss_pred CcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc--cCC
Q psy1604 441 GFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE--KDE 518 (693)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~--~~~ 518 (693)
.......+...+.. ..+...+++.+.. ...
T Consensus 440 ---------------------------------------------~p~~r~~i~~~~~~---~~~~~~~~~~i~~~~~~g 471 (681)
T PRK10917 440 ---------------------------------------------LPPGRKPITTVVIP---DSRRDEVYERIREEIAKG 471 (681)
T ss_pred ---------------------------------------------CCCCCCCcEEEEeC---cccHHHHHHHHHHHHHcC
Confidence 00000111111111 1122233333332 356
Q ss_pred CcEEEEecCh--------HhHHHHHHHHhhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCC
Q psy1604 519 DGVIVFVSTI--------RNADFIACYLCET--EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIR 588 (693)
Q Consensus 519 ~kvLVF~~s~--------~~a~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~ 588 (693)
.+++|||+.. ..++.+++.|.+. ++++..+||+|++.+|++++++|++|+.+|||||+++++|+|+|+++
T Consensus 472 ~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~ 551 (681)
T PRK10917 472 RQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNAT 551 (681)
T ss_pred CcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCc
Confidence 7899999854 4456677777665 46899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC-ChhhhhhhhcccccCCCcceEEEEeC
Q psy1604 589 HVINYDLPQ-EIDEYVHRIGRTGRVGNKGRATSFYD 623 (693)
Q Consensus 589 ~VI~~d~p~-s~~~y~Qr~GRagR~G~~G~~~~~~~ 623 (693)
+||+++.|+ ..+.|.||+||+||.|.+|.|++++.
T Consensus 552 ~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 552 VMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999997 57889999999999999999999995
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.3e-38 Score=372.75 Aligned_cols=316 Identities=20% Similarity=0.187 Sum_probs=231.6
Q ss_pred HHHHHHhCCCCCCCHHHHhhhhhhhcC------CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcC
Q psy1604 209 LVKNLKKSNYTKPTPIQKYAIPAGLEG------RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAP 282 (693)
Q Consensus 209 l~~~l~~~g~~~p~~~Q~~ai~~il~g------~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~P 282 (693)
..+....+.| .||+.|.++|+.++++ +|++++++||+|||.+|+.+++..+. .+++++||+|
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----------~g~qvlvLvP 657 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----------NHKQVAVLVP 657 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----------cCCeEEEEeC
Confidence 3444455677 7999999999999986 89999999999999999888876652 2457999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHh----cCCcEEEechhhHHHHHhcCCcCCCceeEEEEccch
Q psy1604 283 TRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLE----KGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 358 (693)
Q Consensus 283 tr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~----~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah 358 (693)
|++||.|+++.+.++....++++..++++.+...+...+. ..++|+|+||+.+. ..+.+.++++|||||+|
T Consensus 658 T~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEah 732 (1147)
T PRK10689 658 TTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEH 732 (1147)
T ss_pred cHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechh
Confidence 9999999999999877666788888888877666554432 36899999997442 34567899999999999
Q ss_pred hhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhh
Q psy1604 359 RMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRML 438 (693)
Q Consensus 359 ~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~ 438 (693)
++. +.. ...+.. ++ .+.|+++||||+.+....+....+ .++.
T Consensus 733 rfG---~~~--~e~lk~--l~--~~~qvLl~SATpiprtl~l~~~gl------------------~d~~----------- 774 (1147)
T PRK10689 733 RFG---VRH--KERIKA--MR--ADVDILTLTATPIPRTLNMAMSGM------------------RDLS----------- 774 (1147)
T ss_pred hcc---hhH--HHHHHh--cC--CCCcEEEEcCCCCHHHHHHHHhhC------------------CCcE-----------
Confidence 972 221 222322 12 478999999998765544322210 0000
Q ss_pred hcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCC
Q psy1604 439 DMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDE 518 (693)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~ 518 (693)
.+..... ....+.+.+...........++..+. ..
T Consensus 775 -----------------------------------------~I~~~p~--~r~~v~~~~~~~~~~~~k~~il~el~--r~ 809 (1147)
T PRK10689 775 -----------------------------------------IIATPPA--RRLAVKTFVREYDSLVVREAILREIL--RG 809 (1147)
T ss_pred -----------------------------------------EEecCCC--CCCCceEEEEecCcHHHHHHHHHHHh--cC
Confidence 0000000 00011111111111111222222222 35
Q ss_pred CcEEEEecChHhHHHHHHHHhhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCC
Q psy1604 519 DGVIVFVSTIRNADFIACYLCET--EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLP 596 (693)
Q Consensus 519 ~kvLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p 596 (693)
++++|||++++.++.+++.|.+. +..+..+||+|++.+|++++++|++|+.+|||||+++++|||||++++||..+..
T Consensus 810 gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad 889 (1147)
T PRK10689 810 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 (1147)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCC
Confidence 78999999999999999999887 6789999999999999999999999999999999999999999999999955443
Q ss_pred -CChhhhhhhhcccccCCCcceEEEEeCC
Q psy1604 597 -QEIDEYVHRIGRTGRVGNKGRATSFYDP 624 (693)
Q Consensus 597 -~s~~~y~Qr~GRagR~G~~G~~~~~~~~ 624 (693)
.+..+|+||+||+||.|+.|.|++++.+
T Consensus 890 ~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 3567899999999999999999998854
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.7e-38 Score=374.91 Aligned_cols=333 Identities=20% Similarity=0.222 Sum_probs=218.8
Q ss_pred EEccCCCChhHHHHHHHHHHhhcCCCCcc--cCCCCCCeEEEEcCCHHHHHHHHHHHHHHh------------cCCCeeE
Q psy1604 240 GCAQTGSGKTAAFLIPIMHHLLESPGELV--TGYCAQPEVIICAPTRELVMQIHEVACKYA------------YSSVLKI 305 (693)
Q Consensus 240 v~a~TGsGKTl~~ll~il~~l~~~~~~~~--~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~------------~~~~l~~ 305 (693)
|+||||||||++|.+|++..++..+.... .....+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999986532100 011245799999999999999999886521 1246889
Q ss_pred EEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC-CcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCc
Q psy1604 306 CLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG-RISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANR 384 (693)
Q Consensus 306 ~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~ 384 (693)
...+|+.+..++.+.+++.++|||+||++|..++.++ ...++++++|||||+|.|.+..+...+...+.++......+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988887778888999999999999887654 246899999999999999976655554444433221112468
Q ss_pred ceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccce
Q psy1604 385 QTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTL 464 (693)
Q Consensus 385 q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (693)
|+|++|||+++. ..++. ++.. . .....+. ....+ .. ... +
T Consensus 161 QrIgLSATI~n~-eevA~-~L~g-----------~----~pv~Iv~-~~~~r--------------------~~-~l~-v 200 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAA-FLGG-----------D----RPVTVVN-PPAMR--------------------HP-QIR-I 200 (1490)
T ss_pred eEEEEEeeCCCH-HHHHH-HhcC-----------C----CCEEEEC-CCCCc--------------------cc-ceE-E
Confidence 999999999762 23222 2110 0 0000000 00000 00 000 0
Q ss_pred eecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCC--
Q psy1604 465 MFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETE-- 542 (693)
Q Consensus 465 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~-- 542 (693)
.... .... + +..... .....................++..+ ....++||||||+..|+.++..|++..
T Consensus 201 ~vp~---~d~~-~-~~~~~~---~~~~~~~~~r~~~i~~~v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~ 270 (1490)
T PRK09751 201 VVPV---ANMD-D-VSSVAS---GTGEDSHAGREGSIWPYIETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAA 270 (1490)
T ss_pred EEec---Cchh-h-cccccc---ccccccchhhhhhhhHHHHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhh
Confidence 0000 0000 0 000000 00000000000000000111222222 235789999999999999999987531
Q ss_pred -------------------------------CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEE
Q psy1604 543 -------------------------------IATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVI 591 (693)
Q Consensus 543 -------------------------------~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI 591 (693)
+.+..+||+|++++|..+++.|++|++++||||+++++||||+++++||
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVI 350 (1490)
T PRK09751 271 RLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVI 350 (1490)
T ss_pred hccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEE
Confidence 1256899999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhhhhhhcccccC-CCcceEEEEe
Q psy1604 592 NYDLPQEIDEYVHRIGRTGRV-GNKGRATSFY 622 (693)
Q Consensus 592 ~~d~p~s~~~y~Qr~GRagR~-G~~G~~~~~~ 622 (693)
+|+.|.+.++|+||+||+||. |..+.++++.
T Consensus 351 q~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 351 QVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred EeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 999999999999999999996 3334455443
No 54
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.5e-38 Score=337.06 Aligned_cols=319 Identities=22% Similarity=0.299 Sum_probs=242.0
Q ss_pred CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 216 SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 216 ~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
+||..+++-|.++|..+++++|+++..|||.||+++|.+|++-. . .-+|||+|..+|...+.+.+.
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~-----------G~TLVVSPLiSLM~DQV~~l~ 78 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---E-----------GLTLVVSPLISLMKDQVDQLE 78 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---C-----------CCEEEECchHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999998832 1 148999999999999999988
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHHHh----cCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCC--chHHH
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQLE----KGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG--FLGDI 369 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~~~----~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~--~~~~i 369 (693)
..+ +.+..+....+..++...+. ...++++.+|++|..---...+.-..+.++||||||++.+|| |.+++
T Consensus 79 ~~G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y 154 (590)
T COG0514 79 AAG----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDY 154 (590)
T ss_pred HcC----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhH
Confidence 854 66777766655555444332 247999999999965322222334578899999999999997 88888
Q ss_pred HHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHH
Q psy1604 370 QHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHV 449 (693)
Q Consensus 370 ~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 449 (693)
..+-.... ..++..++.+|||.++.++.-....+ .+.....-..
T Consensus 155 ~~lg~l~~--~~~~~p~~AlTATA~~~v~~DI~~~L--------------~l~~~~~~~~-------------------- 198 (590)
T COG0514 155 RRLGRLRA--GLPNPPVLALTATATPRVRDDIREQL--------------GLQDANIFRG-------------------- 198 (590)
T ss_pred HHHHHHHh--hCCCCCEEEEeCCCChHHHHHHHHHh--------------cCCCcceEEe--------------------
Confidence 77755422 22377899999998776655332221 0000000000
Q ss_pred hhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEc-cchhHHHHHHHHHhccCCCcEEEEecCh
Q psy1604 450 MQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEV-PKQQKKKKLLELLREKDEDGVIVFVSTI 528 (693)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~L~~~l~~~~~~kvLVF~~s~ 528 (693)
+ +.. +++.-.+... ....+...+.+ +.....+..||||.|+
T Consensus 199 -----------------s------fdR--------------pNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sR 240 (590)
T COG0514 199 -----------------S------FDR--------------PNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTR 240 (590)
T ss_pred -----------------c------CCC--------------chhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeH
Confidence 0 000 0000000000 01122222222 1245566789999999
Q ss_pred HhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcc
Q psy1604 529 RNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGR 608 (693)
Q Consensus 529 ~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GR 608 (693)
..++.++++|.+.|+.+..+|++|+..+|+.+.++|..++.+|+|||.++++|||-|||.+|||||+|.|++.|.|-+||
T Consensus 241 k~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GR 320 (590)
T COG0514 241 KKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGR 320 (590)
T ss_pred HhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEeCCCC
Q psy1604 609 TGRVGNKGRATSFYDPDQ 626 (693)
Q Consensus 609 agR~G~~G~~~~~~~~~~ 626 (693)
|||.|.+..|++||.+.+
T Consensus 321 AGRDG~~a~aill~~~~D 338 (590)
T COG0514 321 AGRDGLPAEAILLYSPED 338 (590)
T ss_pred ccCCCCcceEEEeecccc
Confidence 999999999999999764
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.3e-37 Score=345.34 Aligned_cols=319 Identities=20% Similarity=0.246 Sum_probs=215.5
Q ss_pred HHHHhhhhhhhcCCCEEEEccCCCChhHH---------HHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 223 PIQKYAIPAGLEGRDLMGCAQTGSGKTAA---------FLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 223 ~~Q~~ai~~il~g~~vlv~a~TGsGKTl~---------~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
.+|.++++.++++++++++|+||||||.+ |++|.+..+..-... ....+++|++|||+||.|+...
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~-----~~~~~ilvt~PrreLa~qi~~~ 241 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPN-----FIERPIVLSLPRVALVRLHSIT 241 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccc-----cCCcEEEEECcHHHHHHHHHHH
Confidence 46999999999999999999999999997 334444443211100 2345899999999999999999
Q ss_pred HHHHhcC---CCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHH
Q psy1604 294 ACKYAYS---SVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQ 370 (693)
Q Consensus 294 ~~~~~~~---~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~ 370 (693)
+.+.... .+..+...+|+.... ......+..+|+|+|++... ..++++++|||||||.+...+ ..+.
T Consensus 242 i~~~vg~~~~~g~~v~v~~Gg~~~~-~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--DllL 311 (675)
T PHA02653 242 LLKSLGFDEIDGSPISLKYGSIPDE-LINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DIII 311 (675)
T ss_pred HHHHhCccccCCceEEEEECCcchH-HhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hHHH
Confidence 8775433 356678889998732 21222336799999986322 247889999999999987665 3333
Q ss_pred HHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHh
Q psy1604 371 HVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVM 450 (693)
Q Consensus 371 ~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 450 (693)
.++.... + ..+|+++||||++.++..+. .++. .+ ..+.+..
T Consensus 312 ~llk~~~-~--~~rq~ILmSATl~~dv~~l~-~~~~-~p-----------------~~I~I~g----------------- 352 (675)
T PHA02653 312 AVARKHI-D--KIRSLFLMTATLEDDRDRIK-EFFP-NP-----------------AFVHIPG----------------- 352 (675)
T ss_pred HHHHHhh-h--hcCEEEEEccCCcHhHHHHH-HHhc-CC-----------------cEEEeCC-----------------
Confidence 4443211 1 23589999999987766542 3310 00 0000000
Q ss_pred hcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc---cCCCcEEEEecC
Q psy1604 451 QHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE---KDEDGVIVFVST 527 (693)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~---~~~~kvLVF~~s 527 (693)
+ + ...+...|+.... .+ .+..... ...+. .+...+.. ...+++|||+++
T Consensus 353 ----------r-------t-~~pV~~~yi~~~~------~~--~~~~~y~-~~~k~-~~l~~L~~~~~~~~g~iLVFlpg 404 (675)
T PHA02653 353 ----------G-------T-LFPISEVYVKNKY------NP--KNKRAYI-EEEKK-NIVTALKKYTPPKGSSGIVFVAS 404 (675)
T ss_pred ----------C-------c-CCCeEEEEeecCc------cc--ccchhhh-HHHHH-HHHHHHHHhhcccCCcEEEEECc
Confidence 0 0 0000111110000 00 0000000 11122 22233322 235689999999
Q ss_pred hHhHHHHHHHHhhC--CCceEEecCCCCHHHHHHHHHHH-hcCCCcEEEEeCcccccCCCCCCCEEEEcC---CCC----
Q psy1604 528 IRNADFIACYLCET--EIATTSIHGSRLQSQREQAIHDF-KTKKMKVLVATAVASRGLDIKGIRHVINYD---LPQ---- 597 (693)
Q Consensus 528 ~~~a~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~~~~F-~~g~~~ILVaT~v~~~GiDip~v~~VI~~d---~p~---- 597 (693)
+.+++.+++.|.+. ++.+..+||+|++. ++++++| ++|+.+|||||+++++|||||+|++||++| .|.
T Consensus 405 ~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g 482 (675)
T PHA02653 405 VSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGG 482 (675)
T ss_pred HHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccC
Confidence 99999999999876 68999999999975 5667777 789999999999999999999999999999 565
Q ss_pred -----ChhhhhhhhcccccCCCcceEEEEeCCCC
Q psy1604 598 -----EIDEYVHRIGRTGRVGNKGRATSFYDPDQ 626 (693)
Q Consensus 598 -----s~~~y~Qr~GRagR~G~~G~~~~~~~~~~ 626 (693)
|.++|+||+|||||. ++|.|+.|++.++
T Consensus 483 ~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 483 KEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred cccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 888999999999999 8999999998543
No 56
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.8e-36 Score=357.49 Aligned_cols=309 Identities=26% Similarity=0.292 Sum_probs=231.7
Q ss_pred HHHHHHh-CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHH
Q psy1604 209 LVKNLKK-SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELV 287 (693)
Q Consensus 209 l~~~l~~-~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 287 (693)
+.+.+++ .|+ .|+++|+.+++.++.|+|++++||||+|||. |.++++..+.. .++++|||+||++|+
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----------~g~~alIL~PTreLa 136 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----------KGKKSYIIFPTRLLV 136 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeccHHHH
Confidence 3334444 366 8999999999999999999999999999996 55665554432 245799999999999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEeCCCCh-----HHHHHHHh-cCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhh
Q psy1604 288 MQIHEVACKYAYSSVLKICLHYGGASS-----MHFNRQLE-KGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRML 361 (693)
Q Consensus 288 ~Q~~~~~~~~~~~~~l~~~~~~gg~~~-----~~~~~~~~-~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~ 361 (693)
.|+++.++++....++.+..++++... ......+. ..++|+|+||++|.+++. .+...++++|||||||+|+
T Consensus 137 ~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 137 EQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhh
Confidence 999999999998888887777766542 22222333 458999999999999877 4556679999999999998
Q ss_pred h-----------CCch-HHHHHHhccCCCC--------------------CCCCcceEEeeccCchh-HHhhhhhhhhhc
Q psy1604 362 D-----------MGFL-GDIQHVMQHSTMP--------------------DVANRQTLMFSATFPET-IQKKGCNILVAT 408 (693)
Q Consensus 362 ~-----------~~~~-~~i~~i~~~~~~~--------------------~~~~~q~lllSAT~~~~-~~~~~~~~~~~~ 408 (693)
+ .||. .++..++...... .....|++++|||+++. +... +
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~---l---- 287 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK---L---- 287 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH---H----
Confidence 6 6774 5676666554320 01267999999998753 2210 0
Q ss_pred hhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccc
Q psy1604 409 MGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGG 488 (693)
Q Consensus 409 ~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~ 488 (693)
...++.+.++....
T Consensus 288 ------------------------------------------------------------------~~~ll~~~v~~~~~ 301 (1176)
T PRK09401 288 ------------------------------------------------------------------FRELLGFEVGSPVF 301 (1176)
T ss_pred ------------------------------------------------------------------hhccceEEecCccc
Confidence 00111122222222
Q ss_pred cccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHh---HHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHh
Q psy1604 489 ASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRN---ADFIACYLCETEIATTSIHGSRLQSQREQAIHDFK 565 (693)
Q Consensus 489 ~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~---a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~ 565 (693)
...++.+.+.... .|...|.++++... .++||||+++.. ++.+++.|...|+++..+||+| ++.+++|+
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~ 373 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFE 373 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHH
Confidence 3344555555443 56667777776543 579999999777 9999999999999999999999 23469999
Q ss_pred cCCCcEEEE----eCcccccCCCCC-CCEEEEcCCCC------ChhhhhhhhcccccC
Q psy1604 566 TKKMKVLVA----TAVASRGLDIKG-IRHVINYDLPQ------EIDEYVHRIGRTGRV 612 (693)
Q Consensus 566 ~g~~~ILVa----T~v~~~GiDip~-v~~VI~~d~p~------s~~~y~Qr~GRagR~ 612 (693)
+|+++|||| |++++||||+|+ +++|||||+|. ....|.||+||+-..
T Consensus 374 ~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 374 EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 999999999 699999999999 89999999998 678899999999643
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-36 Score=347.73 Aligned_cols=303 Identities=20% Similarity=0.251 Sum_probs=219.4
Q ss_pred HHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh-cCC
Q psy1604 223 PIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA-YSS 301 (693)
Q Consensus 223 ~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~-~~~ 301 (693)
.+-.+.+..+.++++++++|+||||||.+|.+++++... .+++++|+.|||++|.|+++.+.+.. ...
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~ 73 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------IGGKIIMLEPRRLAARSAAQRLASQLGEAV 73 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCc
Confidence 344456667778899999999999999999999998752 13479999999999999999986443 333
Q ss_pred CeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccch-hhhhCCchHHH-HHHhccCCCC
Q psy1604 302 VLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD-RMLDMGFLGDI-QHVMQHSTMP 379 (693)
Q Consensus 302 ~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah-~l~~~~~~~~i-~~i~~~~~~~ 379 (693)
+..+...+.+.. ......+|+|+|+++|++.+.+. ..++++++|||||+| ++++.++.-.+ ..+.... +
T Consensus 74 g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l--r 144 (819)
T TIGR01970 74 GQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSL--R 144 (819)
T ss_pred CcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhc--C
Confidence 445544444322 23345799999999999998764 478999999999999 57766654332 2333221 1
Q ss_pred CCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccc
Q psy1604 380 DVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVA 459 (693)
Q Consensus 380 ~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (693)
++.|+++||||++.... ..++ . ....+...
T Consensus 145 --~dlqlIlmSATl~~~~l---~~~l-----------~-------~~~vI~~~--------------------------- 174 (819)
T TIGR01970 145 --EDLKILAMSATLDGERL---SSLL-----------P-------DAPVVESE--------------------------- 174 (819)
T ss_pred --CCceEEEEeCCCCHHHH---HHHc-----------C-------CCcEEEec---------------------------
Confidence 47899999999976431 1110 0 00000000
Q ss_pred cccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhH-----HHHHHHHHhccCCCcEEEEecChHhHHHH
Q psy1604 460 NRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQK-----KKKLLELLREKDEDGVIVFVSTIRNADFI 534 (693)
Q Consensus 460 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-----~~~L~~~l~~~~~~kvLVF~~s~~~a~~l 534 (693)
.....+.+.+.......+ ...+..++.. ..+++|||++++.+++.+
T Consensus 175 ----------------------------gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l 225 (819)
T TIGR01970 175 ----------------------------GRSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRV 225 (819)
T ss_pred ----------------------------CcceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHH
Confidence 000001111111111112 1233344433 457899999999999999
Q ss_pred HHHHhh---CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCC--------------
Q psy1604 535 ACYLCE---TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQ-------------- 597 (693)
Q Consensus 535 ~~~L~~---~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~-------------- 597 (693)
++.|.+ .++.+..+||+|++.+|.++++.|++|+.+|||||+++++|||||+|++||++++|+
T Consensus 226 ~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~ 305 (819)
T TIGR01970 226 QEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLE 305 (819)
T ss_pred HHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceee
Confidence 999987 478899999999999999999999999999999999999999999999999999885
Q ss_pred ----ChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 598 ----EIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 598 ----s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
|.++|.||+|||||. ++|.||.+|+..
T Consensus 306 ~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~ 336 (819)
T TIGR01970 306 TVRISQASATQRAGRAGRL-EPGVCYRLWSEE 336 (819)
T ss_pred EEEECHHHHHhhhhhcCCC-CCCEEEEeCCHH
Confidence 345689999999999 899999999843
No 58
>KOG0354|consensus
Probab=100.00 E-value=2.8e-36 Score=327.58 Aligned_cols=402 Identities=22% Similarity=0.252 Sum_probs=256.7
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCH
Q psy1604 205 LREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTR 284 (693)
Q Consensus 205 l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr 284 (693)
+.+.....+-.-....+++||.+.+..++ ++|+|+++|||+|||++++..+++++...+. .++||++||+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~---------~KiVF~aP~~ 116 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK---------GKVVFLAPTR 116 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc---------ceEEEeeCCc
Confidence 45555555555566789999999999999 9999999999999999999999999877653 4899999999
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcC-CCceeEEEEccchhhhhC
Q psy1604 285 ELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRIS-LASVRFVVLDEADRMLDM 363 (693)
Q Consensus 285 ~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~-l~~~~~lVlDEah~l~~~ 363 (693)
-|+.|+...+..++.. -.+....||.........+...++|+|+||+.|.+.|.++... ++.+.++||||||+-...
T Consensus 117 pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn 194 (746)
T KOG0354|consen 117 PLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKN 194 (746)
T ss_pred hHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccccccc
Confidence 9999999777777655 4555556665555555577888999999999999999876543 589999999999999888
Q ss_pred CchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh-------hhhchhhh-HHHHhhccccccceeEEEech--
Q psy1604 364 GFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI-------LVATMGRL-KDILDRGRISLASVRFVVLDE-- 433 (693)
Q Consensus 364 ~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~-------~~~~~~~l-~~~l~~~~~~~~~~~~~~~d~-- 433 (693)
..+..+..-+..... ...|+|+||||+..........+ ...+...+ ..+............ +.+..
T Consensus 195 ~~Y~~Vmr~~l~~k~---~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~-~~~~~~~ 270 (746)
T KOG0354|consen 195 HPYNNIMREYLDLKN---QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVD-LSLCERD 270 (746)
T ss_pred ccHHHHHHHHHHhhh---ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCc-HHHhhhh
Confidence 777777633322211 24499999999975544432211 11111111 111111111111111 10000
Q ss_pred -hhh-------hhh----cCcc--cchh-------HHhhcccCCccccccceeecccC----------chhhh-------
Q psy1604 434 -ADR-------MLD----MGFL--GDIQ-------HVMQHSTMPDVANRQTLMFSATF----------PETIQ------- 475 (693)
Q Consensus 434 -~~~-------~~~----~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~t~----------~~~l~------- 475 (693)
.+. ++. .++. .+.. ....+...+.....+...+.+.. .+.++
T Consensus 271 ~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~ 350 (746)
T KOG0354|consen 271 IEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDY 350 (746)
T ss_pred hhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhh
Confidence 000 000 0000 0000 00000011111111110011000 00000
Q ss_pred --cceEEEEeec--ccc----------cccceeEEEEEc--cchhHHHHHHHHHhc----cCCCcEEEEecChHhHHHHH
Q psy1604 476 --KNYIFIAVGI--IGG----------ASTDVVQTILEV--PKQQKKKKLLELLRE----KDEDGVIVFVSTIRNADFIA 535 (693)
Q Consensus 476 --~~~~~~~~~~--~~~----------~~~~~~~~~~~~--~~~~k~~~L~~~l~~----~~~~kvLVF~~s~~~a~~l~ 535 (693)
..+-...... ... ...+-.+.+... ....|+..|.+++.+ ....++|||+.++..|+.|.
T Consensus 351 ~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~ 430 (746)
T KOG0354|consen 351 LEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALK 430 (746)
T ss_pred hhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHH
Confidence 0000000000 000 000000111111 125677777776654 56778999999999999999
Q ss_pred HHHhh---CCCceEEec--------CCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhh
Q psy1604 536 CYLCE---TEIATTSIH--------GSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVH 604 (693)
Q Consensus 536 ~~L~~---~~~~v~~lh--------g~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Q 604 (693)
.+|.+ .+++...+- .+|++.++.++++.|++|.++|||||+++++||||+.|+.||.||...|+...+|
T Consensus 431 ~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQ 510 (746)
T KOG0354|consen 431 KWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQ 510 (746)
T ss_pred HHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHH
Confidence 99973 233333333 3799999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCcceEEEEeCC
Q psy1604 605 RIGRTGRVGNKGRATSFYDP 624 (693)
Q Consensus 605 r~GRagR~G~~G~~~~~~~~ 624 (693)
|.|| ||+ +.|.|+++++.
T Consensus 511 rrGR-gRa-~ns~~vll~t~ 528 (746)
T KOG0354|consen 511 RRGR-GRA-RNSKCVLLTTG 528 (746)
T ss_pred Hhcc-ccc-cCCeEEEEEcc
Confidence 9999 999 89999999983
No 59
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=9.7e-36 Score=329.41 Aligned_cols=331 Identities=17% Similarity=0.193 Sum_probs=220.3
Q ss_pred CCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 218 YTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 218 ~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
...|+++|.++++.++.+++.++++|||+|||+++.. +...++... ..++|||+||++|+.||.+.+.++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~~---------~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLENY---------EGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhcC---------CCeEEEEECcHHHHHHHHHHHHHh
Confidence 3589999999999999999999999999999997544 323223221 237999999999999999999998
Q ss_pred hcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCC
Q psy1604 298 AYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHST 377 (693)
Q Consensus 298 ~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~ 377 (693)
.......+..+.+|.... ...+|+|+||+++.+... ..+.++++||+||||++....+ ..++....
T Consensus 182 ~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~~----~~il~~~~ 247 (501)
T PHA02558 182 RLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKSL----TSIITKLD 247 (501)
T ss_pred ccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchhH----HHHHHhhh
Confidence 755444555566665432 357999999999976442 2467899999999999976543 44443321
Q ss_pred CCCCCCcceEEeeccCchhHHhhhhhh-hhh---chhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcc
Q psy1604 378 MPDVANRQTLMFSATFPETIQKKGCNI-LVA---TMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHS 453 (693)
Q Consensus 378 ~~~~~~~q~lllSAT~~~~~~~~~~~~-~~~---~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 453 (693)
..+++++||||++.........+ ..+ ..-.....+....+....+..+...
T Consensus 248 ----~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~--------------------- 302 (501)
T PHA02558 248 ----NCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLR--------------------- 302 (501)
T ss_pred ----ccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEecc---------------------
Confidence 25689999999864321110000 000 0000111111110000000000000
Q ss_pred cCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEE-EccchhHHHHHHHHHhc--cCCCcEEEEecChHh
Q psy1604 454 TMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTIL-EVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRN 530 (693)
Q Consensus 454 ~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~ 530 (693)
.+......+ ...+..+.+. ......+...+.+.+.. ..+.++||||.++++
T Consensus 303 ----------------~~~~~~~~~----------~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h 356 (501)
T PHA02558 303 ----------------YPDEDRVKL----------KGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEH 356 (501)
T ss_pred ----------------CCHHHhhhh----------cccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHH
Confidence 000000000 0000000000 01122333333333332 345679999999999
Q ss_pred HHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-CcccccCCCCCCCEEEEcCCCCChhhhhhhhccc
Q psy1604 531 ADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVAT-AVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRT 609 (693)
Q Consensus 531 a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT-~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRa 609 (693)
++.|++.|.+.+.++..+||++++.+|..+++.|++|+..||||| +++++|+|+|++++||+++++.|...|+||+||+
T Consensus 357 ~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~ 436 (501)
T PHA02558 357 GKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRV 436 (501)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhcc
Confidence 999999999999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred ccCCCcceEEEEeC
Q psy1604 610 GRVGNKGRATSFYD 623 (693)
Q Consensus 610 gR~G~~G~~~~~~~ 623 (693)
+|.+..+....+++
T Consensus 437 ~R~~~~K~~~~i~D 450 (501)
T PHA02558 437 LRKHGSKSIATVWD 450 (501)
T ss_pred ccCCCCCceEEEEE
Confidence 99976554444443
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=8.2e-36 Score=341.62 Aligned_cols=302 Identities=21% Similarity=0.306 Sum_probs=217.1
Q ss_pred HHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH-hcCCC
Q psy1604 224 IQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY-AYSSV 302 (693)
Q Consensus 224 ~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~-~~~~~ 302 (693)
+-.+.+..+.++++++++|+||||||++|.+++++... ...+++|++|||++|.|+++.+.+. ....+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g 77 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----------INGKIIMLEPRRLAARNVAQRLAEQLGEKPG 77 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----------cCCeEEEECChHHHHHHHHHHHHHHhCcccC
Confidence 33455667778899999999999999999999987531 1237999999999999999998654 44455
Q ss_pred eeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchh-hhhCCch-HHHHHHhccCCCCC
Q psy1604 303 LKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR-MLDMGFL-GDIQHVMQHSTMPD 380 (693)
Q Consensus 303 l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~-l~~~~~~-~~i~~i~~~~~~~~ 380 (693)
..+...+++... .....+|+|+||++|++++.+. ..++++++|||||+|. .++..+. ..+..++... +
T Consensus 78 ~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l--r- 147 (812)
T PRK11664 78 ETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGL--R- 147 (812)
T ss_pred ceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC--C-
Confidence 566666555432 2234689999999999988864 4789999999999995 3433321 1222333221 1
Q ss_pred CCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCcccc
Q psy1604 381 VANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVAN 460 (693)
Q Consensus 381 ~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (693)
++.|+++||||++... + ..++ . ....+..+
T Consensus 148 -~~lqlilmSATl~~~~--l-~~~~-----------~-------~~~~I~~~---------------------------- 177 (812)
T PRK11664 148 -DDLKLLIMSATLDNDR--L-QQLL-----------P-------DAPVIVSE---------------------------- 177 (812)
T ss_pred -ccceEEEEecCCCHHH--H-HHhc-----------C-------CCCEEEec----------------------------
Confidence 4779999999997642 1 1110 0 00000000
Q ss_pred ccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHH-----HHHHHHhccCCCcEEEEecChHhHHHHH
Q psy1604 461 RQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKK-----KLLELLREKDEDGVIVFVSTIRNADFIA 535 (693)
Q Consensus 461 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~L~~~l~~~~~~kvLVF~~s~~~a~~l~ 535 (693)
.....+.+.+.......+.. .+..++. ...+.+|||++++.+++.++
T Consensus 178 ---------------------------gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~ 229 (812)
T PRK11664 178 ---------------------------GRSFPVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGVGEIQRVQ 229 (812)
T ss_pred ---------------------------CccccceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCHHHHHHHH
Confidence 00001111121122222222 3334443 34678999999999999999
Q ss_pred HHHhh---CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCC---------------
Q psy1604 536 CYLCE---TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQ--------------- 597 (693)
Q Consensus 536 ~~L~~---~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~--------------- 597 (693)
+.|++ .++.+..+||+|++.+|.++++.|++|+.+|||||+++++|||||+|++||++++++
T Consensus 230 ~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~ 309 (812)
T PRK11664 230 EQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVT 309 (812)
T ss_pred HHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEE
Confidence 99987 578899999999999999999999999999999999999999999999999988775
Q ss_pred ---ChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 598 ---EIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 598 ---s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
|.++|.||+|||||. ++|.||.+|+..
T Consensus 310 ~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 310 QRISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred EeechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 346899999999999 799999999843
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.3e-35 Score=357.00 Aligned_cols=323 Identities=21% Similarity=0.232 Sum_probs=239.2
Q ss_pred HHHHHHHHh-CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHH
Q psy1604 207 EILVKNLKK-SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRE 285 (693)
Q Consensus 207 ~~l~~~l~~-~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 285 (693)
..+.+.+++ .|| .|+++|+++++.+++|+|++++||||+|||+.++++++.... .+.++|||+||++
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-----------~g~~aLVl~PTre 133 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-----------KGKKCYIILPTTL 133 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECHHH
Confidence 445566665 799 699999999999999999999999999999965555543321 2347999999999
Q ss_pred HHHHHHHHHHHHhcCC--CeeEEEEeCCCChHHHHH---HHhc-CCcEEEechhhHHHHHhcCCcCCCceeEEEEccchh
Q psy1604 286 LVMQIHEVACKYAYSS--VLKICLHYGGASSMHFNR---QLEK-GCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 359 (693)
Q Consensus 286 La~Q~~~~~~~~~~~~--~l~~~~~~gg~~~~~~~~---~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~ 359 (693)
|+.|+++.+..+.... ++.+..++|+.+...+.. .+.. .++|+|+||++|.+.+... ...++++|||||||+
T Consensus 134 La~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ 211 (1638)
T PRK14701 134 LVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDA 211 (1638)
T ss_pred HHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECcee
Confidence 9999999999987654 456777888887665533 2333 5899999999998876642 226799999999999
Q ss_pred hhh-----------CCchHHHHH----HhccCC------------------CCCCCCcc-eEEeeccCchhHHhhhhhhh
Q psy1604 360 MLD-----------MGFLGDIQH----VMQHST------------------MPDVANRQ-TLMFSATFPETIQKKGCNIL 405 (693)
Q Consensus 360 l~~-----------~~~~~~i~~----i~~~~~------------------~~~~~~~q-~lllSAT~~~~~~~~~~~~~ 405 (693)
|++ ++|.+++.. ++.... ......+| ++++|||++...... .+
T Consensus 212 ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~--~l- 288 (1638)
T PRK14701 212 FLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRV--KL- 288 (1638)
T ss_pred ccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHH--HH-
Confidence 986 578777764 332100 00012344 577999987531110 00
Q ss_pred hhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeec
Q psy1604 406 VATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGI 485 (693)
Q Consensus 406 ~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~ 485 (693)
+ ..++.+.++.
T Consensus 289 --------------------------------------------------------------------~-~~~l~f~v~~ 299 (1638)
T PRK14701 289 --------------------------------------------------------------------Y-RELLGFEVGS 299 (1638)
T ss_pred --------------------------------------------------------------------h-hcCeEEEecC
Confidence 0 1122223333
Q ss_pred ccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHh---HHHHHHHHhhCCCceEEecCCCCHHHHHHHHH
Q psy1604 486 IGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRN---ADFIACYLCETEIATTSIHGSRLQSQREQAIH 562 (693)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~---a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~ 562 (693)
......++.+.+.......+ ..|.++++.. +.++||||+++.. |+.+++.|.+.|+++..+|++ |..+++
T Consensus 300 ~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~ 372 (1638)
T PRK14701 300 GRSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFD 372 (1638)
T ss_pred CCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHH
Confidence 33334455566555444444 5677777655 4689999999876 589999999999999999995 889999
Q ss_pred HHhcCCCcEEEEe----CcccccCCCCC-CCEEEEcCCCC---Chhhhhhhh-------------cccccCCCcceEEEE
Q psy1604 563 DFKTKKMKVLVAT----AVASRGLDIKG-IRHVINYDLPQ---EIDEYVHRI-------------GRTGRVGNKGRATSF 621 (693)
Q Consensus 563 ~F~~g~~~ILVaT----~v~~~GiDip~-v~~VI~~d~p~---s~~~y~Qr~-------------GRagR~G~~G~~~~~ 621 (693)
+|++|+++||||| ++++||||+|+ |++|||||+|+ +...|.|.. ||++|.|.+..++..
T Consensus 373 ~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~ 452 (1638)
T PRK14701 373 LFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLD 452 (1638)
T ss_pred HHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHH
Confidence 9999999999999 58999999999 99999999999 888777765 999999988877743
Q ss_pred e
Q psy1604 622 Y 622 (693)
Q Consensus 622 ~ 622 (693)
+
T Consensus 453 ~ 453 (1638)
T PRK14701 453 V 453 (1638)
T ss_pred h
Confidence 3
No 62
>KOG0349|consensus
Probab=100.00 E-value=2.8e-36 Score=300.65 Aligned_cols=317 Identities=27% Similarity=0.398 Sum_probs=216.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHh---cCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCcee
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYA---YSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVR 350 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~---~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 350 (693)
.|.++|+-|+|+|++|.+..+++|. ..+.++...++||.....+..++.++.+|+|+||+++.+.+..+.+.+..+.
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 3789999999999999999666654 4455677788999999999999999999999999999999999999999999
Q ss_pred EEEEccchhhhhCCchHHHHHHhccCCCCC--CCCcceEEeeccCch-hHHhhhhhhhhhchhhhHHHHhhcccccccee
Q psy1604 351 FVVLDEADRMLDMGFLGDIQHVMQHSTMPD--VANRQTLMFSATFPE-TIQKKGCNILVATMGRLKDILDRGRISLASVR 427 (693)
Q Consensus 351 ~lVlDEah~l~~~~~~~~i~~i~~~~~~~~--~~~~q~lllSAT~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 427 (693)
++|+|||+.++..++...+..+...++... ....|.+..|||+.. ++..+..+++. +-.|.+.....
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmh-----fptwVdLkgeD----- 435 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMH-----FPTWVDLKGED----- 435 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhcc-----CceeEeccccc-----
Confidence 999999999999898888777776543322 235689999999742 22222221100 00000000000
Q ss_pred EEEechhhhhh---hcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchh
Q psy1604 428 FVVLDEADRML---DMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQ 504 (693)
Q Consensus 428 ~~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (693)
.+-+..+... .......+............+.+ +++... ..+.++..+.. +--
T Consensus 436 -~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~k---------------dn~~pg----~~Spe~~s~a~----kil 491 (725)
T KOG0349|consen 436 -LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTK---------------DNLLPG----QVSPENPSSAT----KIL 491 (725)
T ss_pred -ccchhhccceeecCCccCccHHHHhhhhccCCcccc---------------cccccc----cCCCCChhhhh----HHh
Confidence 0000000000 00000011111000000000100 000000 00000000000 001
Q ss_pred HHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCccccc
Q psy1604 505 KKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETE---IATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRG 581 (693)
Q Consensus 505 k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~---~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~G 581 (693)
|-+.-+..++...-.++||||.++.+|+.|.+++.+.+ +.+.++||++.+.+|.+.++.|+.++.+.||||++++||
T Consensus 492 kgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaarg 571 (725)
T KOG0349|consen 492 KGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARG 571 (725)
T ss_pred cCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhcc
Confidence 11222334455677899999999999999999998864 688999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCC
Q psy1604 582 LDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDP 624 (693)
Q Consensus 582 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~ 624 (693)
|||..+-++||..+|.+...|+||+||.||+.+-|.++.++..
T Consensus 572 ldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 572 LDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred ccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeec
Confidence 9999999999999999999999999999999999999888653
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=9.2e-36 Score=307.00 Aligned_cols=340 Identities=20% Similarity=0.270 Sum_probs=263.6
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhh-hcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE
Q psy1604 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPAG-LEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV 277 (693)
Q Consensus 199 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~i-l~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v 277 (693)
..+++++++.+.+.|+..|++.+.|+|..++..- +.|.|.++..+|+||||++..++-+..++..+ .+.
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g----------~Km 264 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG----------KKM 264 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCC----------CeE
Confidence 3568899999999999999999999999999875 48999999999999999999999998887654 368
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHH----HHhcCCcEEEechhhHHHHHhcCCcCCCceeEEE
Q psy1604 278 IICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNR----QLEKGCNILVATMGRLKDILDRGRISLASVRFVV 353 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~----~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lV 353 (693)
|+|+|..+||+|-++.|++-....++++....|......... .....+||+|+|++-+..+|+.+ ..+.++..||
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVV 343 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVV 343 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEE
Confidence 999999999999999998877778888888777554333221 11236899999999999998887 4689999999
Q ss_pred EccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEech
Q psy1604 354 LDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 433 (693)
Q Consensus 354 lDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~ 433 (693)
|||+|.+.+....+.+.-++.++..- .+..|++.+|||..+. ..+...+...- +..+
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~l-~~~AQ~i~LSATVgNp-------------~elA~~l~a~l--------V~y~- 400 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRYL-FPGAQFIYLSATVGNP-------------EELAKKLGAKL--------VLYD- 400 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHHh-CCCCeEEEEEeecCCh-------------HHHHHHhCCee--------Eeec-
Confidence 99999998876666666655543222 1478999999997432 22221111100 0000
Q ss_pred hhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEc-cchhHHHHHHHH
Q psy1604 434 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEV-PKQQKKKKLLEL 512 (693)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~L~~~ 512 (693)
...-++...+... ...+|.+.+.++
T Consensus 401 ------------------------------------------------------~RPVplErHlvf~~~e~eK~~ii~~L 426 (830)
T COG1202 401 ------------------------------------------------------ERPVPLERHLVFARNESEKWDIIARL 426 (830)
T ss_pred ------------------------------------------------------CCCCChhHeeeeecCchHHHHHHHHH
Confidence 0001111112222 356777777777
Q ss_pred Hhc--------cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCC
Q psy1604 513 LRE--------KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDI 584 (693)
Q Consensus 513 l~~--------~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDi 584 (693)
.+. ...+++|||++|++.|..|+.+|...|+++.++|++|+..+|..+...|.++.+.++|+|..++.|+|+
T Consensus 427 ~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDF 506 (830)
T COG1202 427 VKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDF 506 (830)
T ss_pred HHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCC
Confidence 654 245789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEE---EcCCCC-ChhhhhhhhcccccCC--CcceEEEEeCCCC
Q psy1604 585 KGIRHVI---NYDLPQ-EIDEYVHRIGRTGRVG--NKGRATSFYDPDQ 626 (693)
Q Consensus 585 p~v~~VI---~~d~p~-s~~~y~Qr~GRagR~G--~~G~~~~~~~~~~ 626 (693)
|.-++|+ -++.-| |+.+|.||.|||||.+ ..|++++++.|..
T Consensus 507 PASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 507 PASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred chHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 9655433 134444 8999999999999987 4699999988753
No 64
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.4e-35 Score=319.81 Aligned_cols=388 Identities=18% Similarity=0.182 Sum_probs=248.8
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.|+|+|..+++.++.|+ |+.+.||+|||++|++|++...+. ++.++||+||++||.|.++++..+..
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-----------G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-----------GLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-----------CCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 79999999999999998 999999999999999999987643 34799999999999999999999998
Q ss_pred CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcCCc-------------------------CCCceeEEE
Q psy1604 300 SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRGRI-------------------------SLASVRFVV 353 (693)
Q Consensus 300 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~~-------------------------~l~~~~~lV 353 (693)
..++++.+++|+.+.. .+....++||+|+|...| .++|+.+.. -...+.+.|
T Consensus 170 ~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aI 247 (656)
T PRK12898 170 ALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAI 247 (656)
T ss_pred hcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeE
Confidence 8999999999997643 444556899999999988 566644311 124578999
Q ss_pred Eccchhhh-hCC-----------------chHHHHHHhccCC----CCCCCCcceEEeeccCchhHHhhhhhh--hhh--
Q psy1604 354 LDEADRML-DMG-----------------FLGDIQHVMQHST----MPDVANRQTLMFSATFPETIQKKGCNI--LVA-- 407 (693)
Q Consensus 354 lDEah~l~-~~~-----------------~~~~i~~i~~~~~----~~~~~~~q~lllSAT~~~~~~~~~~~~--~~~-- 407 (693)
|||+|.++ |.. ++.....+...+. +.-....+.+.+|-.-...+..+.... +..
T Consensus 248 vDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~ 327 (656)
T PRK12898 248 VDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGA 327 (656)
T ss_pred eecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccc
Confidence 99999875 211 1122222222111 000122344445433222222211110 000
Q ss_pred --chhhhHHHHhhccccccceeEEEechhhhhhh---------cCcccchhHHhhcccCCccccc---------------
Q psy1604 408 --TMGRLKDILDRGRISLASVRFVVLDEADRMLD---------MGFLGDIQHVMQHSTMPDVANR--------------- 461 (693)
Q Consensus 408 --~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~--------------- 461 (693)
....+...+....+...+..|++.+..-...+ ..|..-+...+.....-.....
T Consensus 328 ~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~ 407 (656)
T PRK12898 328 VRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRR 407 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHh
Confidence 01112222223333344444444332111111 1111111111111100011110
Q ss_pred --cceeecccCchh---hhc----ceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc--CCCcEEEEecChHh
Q psy1604 462 --QTLMFSATFPET---IQK----NYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK--DEDGVIVFVSTIRN 530 (693)
Q Consensus 462 --~~~~~~~t~~~~---l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~--~~~kvLVF~~s~~~ 530 (693)
...-++.|.... +.. +.+.+... ........+.+.......|...|.+.+... ...++||||+++..
T Consensus 408 Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~--kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~ 485 (656)
T PRK12898 408 YLRLAGMTGTAREVAGELWSVYGLPVVRIPTN--RPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAA 485 (656)
T ss_pred hHHHhcccCcChHHHHHHHHHHCCCeEEeCCC--CCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 112223333221 111 22222111 111112233345566778899999888763 35789999999999
Q ss_pred HHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCC---CCC-----EEEEcCCCCChhhh
Q psy1604 531 ADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIK---GIR-----HVINYDLPQEIDEY 602 (693)
Q Consensus 531 a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip---~v~-----~VI~~d~p~s~~~y 602 (693)
++.++..|.+.++++..+||+++ +|+..+..|+.+...|+|||++++||+||+ +|. +||+|++|.|...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 99999999999999999999865 555555566666668999999999999999 666 99999999999999
Q ss_pred hhhhcccccCCCcceEEEEeCCCC
Q psy1604 603 VHRIGRTGRVGNKGRATSFYDPDQ 626 (693)
Q Consensus 603 ~Qr~GRagR~G~~G~~~~~~~~~~ 626 (693)
.||+|||||.|++|.++.|++.++
T Consensus 564 ~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 564 RQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred HHhcccccCCCCCeEEEEEechhH
Confidence 999999999999999999998653
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.7e-35 Score=315.07 Aligned_cols=299 Identities=23% Similarity=0.216 Sum_probs=200.2
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCh--
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASS-- 314 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~-- 314 (693)
++++++|||||||++|++++++.+.... ..+++|++|+++|+.|+++.+..+... ++...++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~---------~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~ 68 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK---------ADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKR 68 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC---------CCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHH
Confidence 5799999999999999999998865432 347999999999999999999987432 22333332211
Q ss_pred ---------HHHH-HHH------hcCCcEEEechhhHHHHHhcCC----cCCC--ceeEEEEccchhhhhCCchHHHHHH
Q psy1604 315 ---------MHFN-RQL------EKGCNILVATMGRLKDILDRGR----ISLA--SVRFVVLDEADRMLDMGFLGDIQHV 372 (693)
Q Consensus 315 ---------~~~~-~~~------~~~~~IlV~Tp~~L~~~l~~~~----~~l~--~~~~lVlDEah~l~~~~~~~~i~~i 372 (693)
.... ... ....+|+|+||+++...+.... ..+. ..++|||||+|.+.+.++.. +..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~ 147 (358)
T TIGR01587 69 IKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAV 147 (358)
T ss_pred HhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHH
Confidence 0000 000 1236899999999988776521 1111 23799999999998765433 4444
Q ss_pred hccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhc
Q psy1604 373 MQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQH 452 (693)
Q Consensus 373 ~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 452 (693)
+.... ..+.|+++||||+|+.+..+...+.... .....+
T Consensus 148 l~~l~---~~~~~~i~~SATlp~~l~~~~~~~~~~~------------------~~~~~~-------------------- 186 (358)
T TIGR01587 148 LEVLK---DNDVPILLMSATLPKFLKEYAEKIGYVE------------------FNEPLD-------------------- 186 (358)
T ss_pred HHHHH---HcCCCEEEEecCchHHHHHHHhcCCCcc------------------cccCCC--------------------
Confidence 43322 2367899999999866554433220000 000000
Q ss_pred ccCCccccccceeecccCchhh-hcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc-cCCCcEEEEecChHh
Q psy1604 453 STMPDVANRQTLMFSATFPETI-QKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE-KDEDGVIVFVSTIRN 530 (693)
Q Consensus 453 ~~~~~~~~~~~~~~~~t~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~-~~~~kvLVF~~s~~~ 530 (693)
.. .. ... ...+.. .......+...+..++.. ..++++||||+++++
T Consensus 187 -----~~---------~~-~~~~~~~~~~-----------------~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 187 -----LK---------EE-RRFERHRFIK-----------------IESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred -----Cc---------cc-ccccccccee-----------------eccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 00 00 000 000000 000111233344444433 346799999999999
Q ss_pred HHHHHHHHhhCCC--ceEEecCCCCHHHHHH----HHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhh
Q psy1604 531 ADFIACYLCETEI--ATTSIHGSRLQSQREQ----AIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVH 604 (693)
Q Consensus 531 a~~l~~~L~~~~~--~v~~lhg~~~~~~R~~----~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Q 604 (693)
++.+++.|++.+. .+..+||++++.+|.+ +++.|++++.+|||||+++++|+||+ +++||++..| +++|+|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iq 311 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQ 311 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHH
Confidence 9999999988765 4899999999999976 48999999999999999999999995 8999998776 789999
Q ss_pred hhcccccCCCcc----eEEEEeCC
Q psy1604 605 RIGRTGRVGNKG----RATSFYDP 624 (693)
Q Consensus 605 r~GRagR~G~~G----~~~~~~~~ 624 (693)
|+||+||.|++. .+++|...
T Consensus 312 r~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 312 RLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred HhccccCCCCCCCCCCeEEEEeec
Confidence 999999998643 56666653
No 66
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.1e-33 Score=331.47 Aligned_cols=378 Identities=24% Similarity=0.284 Sum_probs=246.2
Q ss_pred CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 217 NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
+...|++||.+++..++.+ |+++++|||+|||+++++++...+. . .+.++|||+||++|+.||.+.+++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-~---------~~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-K---------KGGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-h---------CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 4458899999999988877 9999999999999999998887763 2 234799999999999999999999
Q ss_pred HhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccC
Q psy1604 297 YAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHS 376 (693)
Q Consensus 297 ~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~ 376 (693)
+......++..+.|+..... +..++..++|+|+||+.+...+..+.+.+.++++|||||||++.....+..+...+...
T Consensus 81 ~~~~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~ 159 (773)
T PRK13766 81 FLNIPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED 159 (773)
T ss_pred HhCCCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhc
Confidence 87554557777777766553 44566678999999999998888788888999999999999987655444444433221
Q ss_pred CCCCCCCcceEEeeccCchhHHhh---hhhhh-----hhc--hhhhHHHHhhccccccceeEEEechhh-----------
Q psy1604 377 TMPDVANRQTLMFSATFPETIQKK---GCNIL-----VAT--MGRLKDILDRGRISLASVRFVVLDEAD----------- 435 (693)
Q Consensus 377 ~~~~~~~~q~lllSAT~~~~~~~~---~~~~~-----~~~--~~~l~~~l~~~~~~~~~~~~~~~d~~~----------- 435 (693)
....++++||||+......+ ...+. +.+ ...+...+. .....++..+...
T Consensus 160 ----~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~-----~~~v~~~~v~l~~~~~~i~~~l~~ 230 (773)
T PRK13766 160 ----AKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVH-----KVKIEWVRVELPEELKEIRDLLNE 230 (773)
T ss_pred ----CCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhc-----cceeEEEEeCCcHHHHHHHHHHHH
Confidence 13567999999974322111 11100 000 000000000 0000010000000
Q ss_pred -------hhhhcCccc----------------chhHHhhc------------------cc----CCccccccceeecccC
Q psy1604 436 -------RMLDMGFLG----------------DIQHVMQH------------------ST----MPDVANRQTLMFSATF 470 (693)
Q Consensus 436 -------~~~~~~~~~----------------~~~~~~~~------------------~~----~~~~~~~~~~~~~~t~ 470 (693)
.+...+... .....+.. .. ...........+..++
T Consensus 231 ~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l 310 (773)
T PRK13766 231 ALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERL 310 (773)
T ss_pred HHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 000000000 00000000 00 0000000000000000
Q ss_pred ---------ch---hhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc----cCCCcEEEEecChHhHHHH
Q psy1604 471 ---------PE---TIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE----KDEDGVIVFVSTIRNADFI 534 (693)
Q Consensus 471 ---------~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~----~~~~kvLVF~~s~~~a~~l 534 (693)
.+ .+..+.... ....... .......|...|.+++.. ....++||||++++.++.|
T Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~---~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L 381 (773)
T PRK13766 311 REEARSSGGSKASKRLVEDPRFR------KAVRKAK---ELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKI 381 (773)
T ss_pred HhhccccCCcHHHHHHHhCHHHH------HHHHHHH---hcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHH
Confidence 00 000000000 0000000 001234677777777765 5778999999999999999
Q ss_pred HHHHhhCCCceEEecCC--------CCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhh
Q psy1604 535 ACYLCETEIATTSIHGS--------RLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRI 606 (693)
Q Consensus 535 ~~~L~~~~~~v~~lhg~--------~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~ 606 (693)
.+.|...++.+..+||. |++.+|..++++|++|+.++||||+++++|+|+|++++||+||+|+++..|+||+
T Consensus 382 ~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~ 461 (773)
T PRK13766 382 VDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRK 461 (773)
T ss_pred HHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHh
Confidence 99999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeCCC
Q psy1604 607 GRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 607 GRagR~G~~G~~~~~~~~~ 625 (693)
||+||.| +|.+++++..+
T Consensus 462 GR~gR~~-~~~v~~l~~~~ 479 (773)
T PRK13766 462 GRTGRQE-EGRVVVLIAKG 479 (773)
T ss_pred cccCcCC-CCEEEEEEeCC
Confidence 9999985 48888888754
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.4e-34 Score=321.17 Aligned_cols=392 Identities=17% Similarity=0.178 Sum_probs=249.6
Q ss_pred CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 217 NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
|. .|+++|..+.+.+++|+ ++.+.||+|||++|++|++...+. ++.++|++||++||.|.++.+..
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-----------G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-----------GKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-----------CCCeEEEeCCHHHHHHHHHHHHH
Confidence 55 89999999999888876 999999999999999999866643 34699999999999999999999
Q ss_pred HhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcCC------cCCCceeEEEEccchhhhhC-C----
Q psy1604 297 YAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRGR------ISLASVRFVVLDEADRMLDM-G---- 364 (693)
Q Consensus 297 ~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~l~~~-~---- 364 (693)
+....++++.++.|+.+...+++ ....++|+|+||++| .++|.... ..+..+.++||||||+|+=. .
T Consensus 142 l~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 142 VYEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred HHhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 99999999999999988333333 335699999999999 56665432 24578999999999998621 1
Q ss_pred -----------chHHHHHHhccCC----CCCCCCcceEEeeccCchhHHhhhh--hhhhhch----hhhHHHHhhccccc
Q psy1604 365 -----------FLGDIQHVMQHST----MPDVANRQTLMFSATFPETIQKKGC--NILVATM----GRLKDILDRGRISL 423 (693)
Q Consensus 365 -----------~~~~i~~i~~~~~----~~~~~~~q~lllSAT~~~~~~~~~~--~~~~~~~----~~l~~~l~~~~~~~ 423 (693)
.+.....+..... +.-....+.+.++..--..+..... .+.-... ..+...+....+..
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 1222222222211 0001122333333321111111100 0000000 11112222222333
Q ss_pred cceeEEEechhhhhh---------hcCcccchhHHhhcccCCccccccceeec-----------------ccC---chhh
Q psy1604 424 ASVRFVVLDEADRML---------DMGFLGDIQHVMQHSTMPDVANRQTLMFS-----------------ATF---PETI 474 (693)
Q Consensus 424 ~~~~~~~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~t~---~~~l 474 (693)
.+..|++.+..-... ...|..-+........--..........+ .|. ...+
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~ 380 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF 380 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH
Confidence 344444433211111 11111111111111110111111000101 111 0111
Q ss_pred hcceEEEEeeccccccccee---EEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEec
Q psy1604 475 QKNYIFIAVGIIGGASTDVV---QTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIH 549 (693)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lh 549 (693)
.+-|-. .+.......+... ..........|...+.+.+.. ....++||||++++.++.++..|.+.++++..+|
T Consensus 381 ~~~Y~l-~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~ 459 (790)
T PRK09200 381 FEVYNM-EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLN 459 (790)
T ss_pred HHHhCC-cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEec
Confidence 111111 1111111111111 122334567888888888865 4678999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCC---CCCC-----EEEEcCCCCChhhhhhhhcccccCCCcceEEEE
Q psy1604 550 GSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDI---KGIR-----HVINYDLPQEIDEYVHRIGRTGRVGNKGRATSF 621 (693)
Q Consensus 550 g~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDi---p~v~-----~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~ 621 (693)
|++.+.++..+...++.| .|+|||++++||+|| ++|. +||+|++|.|...|.||+|||||.|++|.++.|
T Consensus 460 ~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~ 537 (790)
T PRK09200 460 AKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFF 537 (790)
T ss_pred CCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEE
Confidence 999998888888887776 799999999999999 6898 999999999999999999999999999999999
Q ss_pred eCCCC
Q psy1604 622 YDPDQ 626 (693)
Q Consensus 622 ~~~~~ 626 (693)
++.++
T Consensus 538 is~eD 542 (790)
T PRK09200 538 ISLED 542 (790)
T ss_pred EcchH
Confidence 98653
No 68
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=325.12 Aligned_cols=343 Identities=22% Similarity=0.234 Sum_probs=248.9
Q ss_pred CCCHHHHHHHHhCCCCCCCHHHHhhhhhhh-cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcC
Q psy1604 204 GLREILVKNLKKSNYTKPTPIQKYAIPAGL-EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAP 282 (693)
Q Consensus 204 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il-~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~P 282 (693)
.+++.+.+.++..++..+++.|+.++.... +++|+|+++|||||||+.+++.+++.+.+.+ .++|++||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~----------~k~vYivP 84 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGG----------GKVVYIVP 84 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcC----------CcEEEEeC
Confidence 367888888888899899999999887776 4599999999999999999999999997752 36999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhh
Q psy1604 283 TRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 283 tr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~ 362 (693)
+++||.+.++++++| ...++++...+|+..... .....++|+|+||+++..++++....+.++++||+||+|.+.+
T Consensus 85 lkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 85 LKALAEEKYEEFSRL-EELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred hHHHHHHHHHHhhhH-HhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCC
Confidence 999999999999944 457899999999887544 2235689999999999999988777788999999999999998
Q ss_pred CCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCc
Q psy1604 363 MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGF 442 (693)
Q Consensus 363 ~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~ 442 (693)
....+.++.+..+..... ...|++++|||+|+- ..+..|++.... ....++..+
T Consensus 161 ~~RG~~lE~iv~r~~~~~-~~~rivgLSATlpN~-------------~evA~wL~a~~~-~~~~rp~~l----------- 214 (766)
T COG1204 161 RTRGPVLESIVARMRRLN-ELIRIVGLSATLPNA-------------EEVADWLNAKLV-ESDWRPVPL----------- 214 (766)
T ss_pred cccCceehhHHHHHHhhC-cceEEEEEeeecCCH-------------HHHHHHhCCccc-ccCCCCccc-----------
Confidence 878888888776643221 237999999999863 233444433222 000000000
Q ss_pred ccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEE
Q psy1604 443 LGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVI 522 (693)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvL 522 (693)
....+............. .............+.+.+ ...+++|
T Consensus 215 -------------------------------~~~v~~~~~~~~~~~~~k----~~~~~~~~~~~~~v~~~~--~~~~qvL 257 (766)
T COG1204 215 -------------------------------RRGVPYVGAFLGADGKKK----TWPLLIDNLALELVLESL--AEGGQVL 257 (766)
T ss_pred -------------------------------ccCCccceEEEEecCccc----cccccchHHHHHHHHHHH--hcCCeEE
Confidence 000000000000000000 000011111222222222 4577899
Q ss_pred EEecChHhHHHHHHHHhhC-------------------------------------CCceEEecCCCCHHHHHHHHHHHh
Q psy1604 523 VFVSTIRNADFIACYLCET-------------------------------------EIATTSIHGSRLQSQREQAIHDFK 565 (693)
Q Consensus 523 VF~~s~~~a~~l~~~L~~~-------------------------------------~~~v~~lhg~~~~~~R~~~~~~F~ 565 (693)
|||++++.+...++.|... ...+..+|++++.++|..+.+.|+
T Consensus 258 vFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr 337 (766)
T COG1204 258 VFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFR 337 (766)
T ss_pred EEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHh
Confidence 9999999999998888730 022678999999999999999999
Q ss_pred cCCCcEEEEeCcccccCCCCCCCEEE----EcC-----CCCChhhhhhhhcccccCCC--cceEEEEeC
Q psy1604 566 TKKMKVLVATAVASRGLDIKGIRHVI----NYD-----LPQEIDEYVHRIGRTGRVGN--KGRATSFYD 623 (693)
Q Consensus 566 ~g~~~ILVaT~v~~~GiDip~v~~VI----~~d-----~p~s~~~y~Qr~GRagR~G~--~G~~~~~~~ 623 (693)
.|.++||+||++++.|+|+|.-.+|| .|+ .+-+..+++|++|||||.|- .|.++++.+
T Consensus 338 ~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 338 KGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred cCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEec
Confidence 99999999999999999999766666 366 45678899999999999984 466666664
No 69
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=6.7e-34 Score=336.31 Aligned_cols=295 Identities=24% Similarity=0.315 Sum_probs=215.0
Q ss_pred HHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHH
Q psy1604 207 EILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTREL 286 (693)
Q Consensus 207 ~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 286 (693)
..+.+.+.+....+|+++|+.+++.++.|++++++||||+|||+ |.+|++..+... ++++|||+||++|
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~----------g~~vLIL~PTreL 133 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK----------GKRCYIILPTTLL 133 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc----------CCeEEEEeCHHHH
Confidence 44555565555558999999999999999999999999999997 667776655332 3579999999999
Q ss_pred HHHHHHHHHHHhcCCCeeEE---EEeCCCChHHHHHH---Hh-cCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchh
Q psy1604 287 VMQIHEVACKYAYSSVLKIC---LHYGGASSMHFNRQ---LE-KGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 359 (693)
Q Consensus 287 a~Q~~~~~~~~~~~~~l~~~---~~~gg~~~~~~~~~---~~-~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~ 359 (693)
+.|+++.+.++....++.+. .++|+.+...+... +. .+++|+|+||++|.+.+..- .. +++++||||||+
T Consensus 134 a~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~ 210 (1171)
T TIGR01054 134 VIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDA 210 (1171)
T ss_pred HHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHh
Confidence 99999999999876655443 46788776554332 33 35999999999999887642 12 899999999999
Q ss_pred hhh-----------CCchHH-HHHHhccC--------------------CCCCCCCcc--eEEeecc-CchhHHhhhhhh
Q psy1604 360 MLD-----------MGFLGD-IQHVMQHS--------------------TMPDVANRQ--TLMFSAT-FPETIQKKGCNI 404 (693)
Q Consensus 360 l~~-----------~~~~~~-i~~i~~~~--------------------~~~~~~~~q--~lllSAT-~~~~~~~~~~~~ 404 (693)
|++ +||..+ +..++... ..+ ..+| ++++||| +|..+....
T Consensus 211 ~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~q~~li~~SAT~~p~~~~~~l--- 285 (1171)
T TIGR01054 211 LLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIP--GKKRGCLIVSSATGRPRGKRAKL--- 285 (1171)
T ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhh--hccCcEEEEEeCCCCccccHHHH---
Confidence 998 677664 45443211 012 2333 5678999 454332110
Q ss_pred hhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEee
Q psy1604 405 LVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVG 484 (693)
Q Consensus 405 ~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~ 484 (693)
..+.+.+.++
T Consensus 286 ----------------------------------------------------------------------~r~ll~~~v~ 295 (1171)
T TIGR01054 286 ----------------------------------------------------------------------FRELLGFEVG 295 (1171)
T ss_pred ----------------------------------------------------------------------cccccceEec
Confidence 0011112222
Q ss_pred cccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecCh---HhHHHHHHHHhhCCCceEEecCCCCHHHHHHHH
Q psy1604 485 IIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTI---RNADFIACYLCETEIATTSIHGSRLQSQREQAI 561 (693)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~---~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~ 561 (693)
.......++.+.+..... +...|.++++.. +.++||||+++ +.|+.++..|.+.|+++..+||++++ +++
T Consensus 296 ~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l 368 (1171)
T TIGR01054 296 GGSDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDY 368 (1171)
T ss_pred CccccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHH
Confidence 222233344454443332 244566666654 46799999999 99999999999999999999999973 689
Q ss_pred HHHhcCCCcEEEEe----CcccccCCCCC-CCEEEEcCCCC
Q psy1604 562 HDFKTKKMKVLVAT----AVASRGLDIKG-IRHVINYDLPQ 597 (693)
Q Consensus 562 ~~F~~g~~~ILVaT----~v~~~GiDip~-v~~VI~~d~p~ 597 (693)
++|++|+++||||| ++++||||||+ +++|||||+|.
T Consensus 369 ~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 369 EKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 99999999999995 99999999999 89999999995
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.7e-33 Score=312.47 Aligned_cols=390 Identities=16% Similarity=0.160 Sum_probs=237.8
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.|+++|..+...+.. ..++.++||+|||++|++|++...+.. +.++|++|+++||.|+++++..+..
T Consensus 70 rpydVQlig~l~l~~--G~Iaem~TGeGKTLta~Lpa~l~aL~g-----------~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQ--GNIAEMKTGEGKTLTATMPLYLNALTG-----------KGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CccHHHHHHHHHhcC--CceeEecCCcchHHHHHHHHHHHhhcC-----------CceEEeCCCHHHHHHHHHHHHHHHh
Confidence 555556555555444 479999999999999999987666432 3589999999999999999999988
Q ss_pred CCCeeEEEEeCCCC---hHHHHHHHhcCCcEEEechhhH-HHHHhcC------CcCCCceeEEEEccchhhhhCC-----
Q psy1604 300 SSVLKICLHYGGAS---SMHFNRQLEKGCNILVATMGRL-KDILDRG------RISLASVRFVVLDEADRMLDMG----- 364 (693)
Q Consensus 300 ~~~l~~~~~~gg~~---~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEah~l~~~~----- 364 (693)
..++++.+++++.. .....+....+++|+|+||++| .++|... ...+..+.++|+||||.|+-..
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 88999988776532 2222333446799999999999 5655332 2346789999999999986322
Q ss_pred -----------chHHHHHHhccCCCC----CCCCcceEEeeccCchhHHhhh--hhhh----hhchhhhHHHHhhccccc
Q psy1604 365 -----------FLGDIQHVMQHSTMP----DVANRQTLMFSATFPETIQKKG--CNIL----VATMGRLKDILDRGRISL 423 (693)
Q Consensus 365 -----------~~~~i~~i~~~~~~~----~~~~~q~lllSAT~~~~~~~~~--~~~~----~~~~~~l~~~l~~~~~~~ 423 (693)
.+.....+...+... -....+.+.+|-.--..+..+. ..+. ......+...+....+..
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 111222222211100 0012223333322111111110 0000 000011222222223333
Q ss_pred cceeEEEechhhhhh---------hcCcccchhHHhhcccCCccccccceeecccCch--------------------hh
Q psy1604 424 ASVRFVVLDEADRML---------DMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPE--------------------TI 474 (693)
Q Consensus 424 ~~~~~~~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~--------------------~l 474 (693)
.+..|++.+..-... ...+..-+........--.........-+.|+.. .+
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef 376 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEF 376 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHH
Confidence 444444433211111 1111111111111111111111111111111111 11
Q ss_pred hcceEEEEeeccccccccee---EEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEec
Q psy1604 475 QKNYIFIAVGIIGGASTDVV---QTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIH 549 (693)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lh 549 (693)
.+-|- ..+-......+... ..........|...+.+.+.. ....++||||+++..++.++..|.+.++++..+|
T Consensus 377 ~~iY~-l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~ 455 (762)
T TIGR03714 377 IETYS-LSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLN 455 (762)
T ss_pred HHHhC-CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEec
Confidence 11110 01111111111111 112444567788888888866 5678999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCC---------CCCEEEEcCCCCChhhhhhhhcccccCCCcceEEE
Q psy1604 550 GSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIK---------GIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATS 620 (693)
Q Consensus 550 g~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip---------~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~ 620 (693)
+++.+.++..+.++++.| .|+|||++++||+||+ ++.+|++|++|..... .||+|||||.|.+|.++.
T Consensus 456 a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~ 532 (762)
T TIGR03714 456 AQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQF 532 (762)
T ss_pred CCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEE
Confidence 999999988888877777 7999999999999999 8999999999988766 999999999999999999
Q ss_pred EeCCCC
Q psy1604 621 FYDPDQ 626 (693)
Q Consensus 621 ~~~~~~ 626 (693)
|++.++
T Consensus 533 ~is~eD 538 (762)
T TIGR03714 533 FVSLED 538 (762)
T ss_pred EEccch
Confidence 998654
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2e-33 Score=322.37 Aligned_cols=345 Identities=20% Similarity=0.234 Sum_probs=251.6
Q ss_pred CHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHH
Q psy1604 206 REILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRE 285 (693)
Q Consensus 206 ~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 285 (693)
...+...+.+.|+.+|+++|.+|+..+.+|+|++|+.+||||||.+|++||++++++.+.. ++|+|.||++
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a---------~AL~lYPtnA 126 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA---------RALLLYPTNA 126 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc---------cEEEEechhh
Confidence 4556888888899999999999999999999999999999999999999999999987643 7999999999
Q ss_pred HHHHHHHHHHHHhcCCC--eeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC----cCCCceeEEEEccchh
Q psy1604 286 LVMQIHEVACKYAYSSV--LKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR----ISLASVRFVVLDEADR 359 (693)
Q Consensus 286 La~Q~~~~~~~~~~~~~--l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~----~~l~~~~~lVlDEah~ 359 (693)
|++.+.+.+.++....+ +....+.|+......+..+.+.++|+++||.+|...+-+.. ..++++++||+||+|.
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 99999999999987766 77777778887777767788999999999999988554332 3467799999999997
Q ss_pred hhhCCchHHHHHHhccCCC---CCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 360 MLDMGFLGDIQHVMQHSTM---PDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 360 l~~~~~~~~i~~i~~~~~~---~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
+- --|...+..++.++.. ....+.|+|+.|||+.+.-......+ ....... +++
T Consensus 207 Yr-Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~------------------~~~f~~~-v~~--- 263 (851)
T COG1205 207 YR-GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELF------------------GRDFEVP-VDE--- 263 (851)
T ss_pred cc-ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhc------------------CCcceee-ccC---
Confidence 73 3355555555443211 11247899999999754322211111 0000000 000
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc-
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE- 515 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~- 515 (693)
...+... ..++.. .. .+..... .....+...+..+...
T Consensus 264 -------------------------------~g~~~~~-~~~~~~---~p-----~~~~~~~-~~r~s~~~~~~~~~~~~ 302 (851)
T COG1205 264 -------------------------------DGSPRGL-RYFVRR---EP-----PIRELAE-SIRRSALAELATLAALL 302 (851)
T ss_pred -------------------------------CCCCCCc-eEEEEe---CC-----cchhhhh-hcccchHHHHHHHHHHH
Confidence 0000000 000000 00 0000000 0011233333333332
Q ss_pred -cCCCcEEEEecChHhHHHHH----HHHhhCC----CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCC
Q psy1604 516 -KDEDGVIVFVSTIRNADFIA----CYLCETE----IATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKG 586 (693)
Q Consensus 516 -~~~~kvLVF~~s~~~a~~l~----~~L~~~~----~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~ 586 (693)
...-++|+|+.++..++.+. ..+...+ ..+..+++++...+|.++...|+.|+..++++|++++-||||.+
T Consensus 303 ~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ 382 (851)
T COG1205 303 VRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGS 382 (851)
T ss_pred HHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehh
Confidence 46678999999999999997 3444444 56889999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC-ChhhhhhhhcccccCCCcceEEEEeC
Q psy1604 587 IRHVINYDLPQ-EIDEYVHRIGRTGRVGNKGRATSFYD 623 (693)
Q Consensus 587 v~~VI~~d~p~-s~~~y~Qr~GRagR~G~~G~~~~~~~ 623 (693)
++.||.++.|. +..++.||.||+||.++.+..++.+.
T Consensus 383 ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 383 LDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred hhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999 99999999999999997777776665
No 72
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=8.7e-33 Score=304.76 Aligned_cols=382 Identities=19% Similarity=0.241 Sum_probs=244.0
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.|+++|..+.+.+..|+ ++.++||+|||++|++|++-..+. +..++|++||++||.|.++++..+..
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------G~~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----------CCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 79999999999888776 999999999999999999644433 22589999999999999999999999
Q ss_pred CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcC------CcCCCceeEEEEccchhhhhCCchHHHHHH
Q psy1604 300 SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRG------RISLASVRFVVLDEADRMLDMGFLGDIQHV 372 (693)
Q Consensus 300 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEah~l~~~~~~~~i~~i 372 (693)
..++++.+++|+.+...... ...++|+|+||++| .++++.+ .+.+..+.++||||+|+|+-.....- .+
T Consensus 123 ~LGLsv~~i~g~~~~~~r~~--~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtp--Li 198 (745)
T TIGR00963 123 FLGLSVGLILSGMSPEERRE--AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTP--LI 198 (745)
T ss_pred cCCCeEEEEeCCCCHHHHHH--hcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhH--Hh
Confidence 99999999999988654433 33589999999999 8888766 24678899999999999874211110 01
Q ss_pred hccCCCCCCCCcceEEeeccC-c----------------------hhHHhhhhhhh-----hh--c---hhhhHHHHhhc
Q psy1604 373 MQHSTMPDVANRQTLMFSATF-P----------------------ETIQKKGCNIL-----VA--T---MGRLKDILDRG 419 (693)
Q Consensus 373 ~~~~~~~~~~~~q~lllSAT~-~----------------------~~~~~~~~~~~-----~~--~---~~~l~~~l~~~ 419 (693)
+... . .....+.++||. + ..+... ..++ .. . ...+...+...
T Consensus 199 isg~-~---~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~-e~~~~~~~ly~~~~~~~~~~i~~Al~A~ 273 (745)
T TIGR00963 199 ISGP-A---EKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKA-EDLLGVDNLYDLENSPLIHYINNALKAK 273 (745)
T ss_pred hcCC-C---CCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHH-HHHcCCccccChhhhHHHHHHHHHHHHH
Confidence 1100 0 011112222221 0 001110 1110 00 0 00111122222
Q ss_pred cccccceeEEEechhhhhhh---------cCcccchhHHhhcccCCccccccceeecccCchh-----------------
Q psy1604 420 RISLASVRFVVLDEADRMLD---------MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPET----------------- 473 (693)
Q Consensus 420 ~~~~~~~~~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~----------------- 473 (693)
.+...+..|++.+..-...+ ..|..-+...+....--..........+.|+..-
T Consensus 274 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 353 (745)
T TIGR00963 274 ELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTE 353 (745)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHH
Confidence 22333444444332111111 1111111111111111111111111111111111
Q ss_pred ---hhcceEEEEeeccccccccee---EEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCce
Q psy1604 474 ---IQKNYIFIAVGIIGGASTDVV---QTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIAT 545 (693)
Q Consensus 474 ---l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v 545 (693)
+.+-|- ..+-......+... ..........|...+.+.+.. ..+.++||||+++..++.++..|.+.+++.
T Consensus 354 ~~E~~~iY~-l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~ 432 (745)
T TIGR00963 354 EEEFEKIYN-LEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPH 432 (745)
T ss_pred HHHHHHHhC-CCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCe
Confidence 111110 00000111111110 112233455677777776643 578899999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCC-------CCEEEEcCCCCChhhhhhhhcccccCCCcceE
Q psy1604 546 TSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKG-------IRHVINYDLPQEIDEYVHRIGRTGRVGNKGRA 618 (693)
Q Consensus 546 ~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~-------v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~ 618 (693)
..+|+. +.+|+..+..|+.+...|+|||++++||+||+. .-+||++++|.|...|.|++||+||.|.+|.+
T Consensus 433 ~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 433 NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 999998 889999999999999999999999999999988 55999999999999999999999999999999
Q ss_pred EEEeCCCC
Q psy1604 619 TSFYDPDQ 626 (693)
Q Consensus 619 ~~~~~~~~ 626 (693)
..|+..++
T Consensus 511 ~~~ls~eD 518 (745)
T TIGR00963 511 RFFLSLED 518 (745)
T ss_pred EEEEeccH
Confidence 99998654
No 73
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2e-32 Score=304.09 Aligned_cols=344 Identities=17% Similarity=0.182 Sum_probs=222.5
Q ss_pred CCCCHHHHhhhhhhhc-C--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGLE-G--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~-g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
..|+|||.+++..+.. + +..++++|||+|||++.+..+ ..+ +.++|||||+..|+.||.+++.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l-------------~k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV-------------KKSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh-------------CCCEEEEeCcHHHHHHHHHHHH
Confidence 4699999999998874 3 478999999999999966544 333 1258999999999999999999
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC--------CcCCCceeEEEEccchhhhhCCchH
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG--------RISLASVRFVVLDEADRMLDMGFLG 367 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~--------~~~l~~~~~lVlDEah~l~~~~~~~ 367 (693)
+|.......+..++|+.... ......|+|+|++++.....+. .+.-..+.+||+||||++....
T Consensus 320 ~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~--- 391 (732)
T TIGR00603 320 MWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM--- 391 (732)
T ss_pred HhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH---
Confidence 98654445565565543221 1234789999999886432211 1223468899999999986433
Q ss_pred HHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhh-hhhhc---hhhhHHHHhhccccccceeEEEechhhhhhhcCcc
Q psy1604 368 DIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCN-ILVAT---MGRLKDILDRGRISLASVRFVVLDEADRMLDMGFL 443 (693)
Q Consensus 368 ~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~-~~~~~---~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~ 443 (693)
+..++.... ....++||||+..+-.....- ++++. ......+.....+....+..+..
T Consensus 392 -fr~il~~l~-----a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v------------ 453 (732)
T TIGR00603 392 -FRRVLTIVQ-----AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWC------------ 453 (732)
T ss_pred -HHHHHHhcC-----cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEe------------
Confidence 333443322 446799999985432111100 00000 00011111111111111100000
Q ss_pred cchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc--CCCcE
Q psy1604 444 GDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK--DEDGV 521 (693)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~--~~~kv 521 (693)
.+.+.....|+..... ...........|+..+..+++.. .+.++
T Consensus 454 -------------------------~~t~~~~~~yl~~~~~---------~k~~l~~~np~K~~~~~~Li~~he~~g~ki 499 (732)
T TIGR00603 454 -------------------------PMTPEFYREYLRENSR---------KRMLLYVMNPNKFRACQFLIRFHEQRGDKI 499 (732)
T ss_pred -------------------------cCCHHHHHHHHHhcch---------hhhHHhhhChHHHHHHHHHHHHHhhcCCeE
Confidence 0000011111100000 00001112346777776676643 67899
Q ss_pred EEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEEeCcccccCCCCCCCEEEEcCCC-CCh
Q psy1604 522 IVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTK-KMKVLVATAVASRGLDIKGIRHVINYDLP-QEI 599 (693)
Q Consensus 522 LVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g-~~~ILVaT~v~~~GiDip~v~~VI~~d~p-~s~ 599 (693)
||||.+...++.++..|. +..+||++++.+|.+++++|+++ .+++||+|+++.+|||+|++++||+++.| .|.
T Consensus 500 LVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~ 574 (732)
T TIGR00603 500 IVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSR 574 (732)
T ss_pred EEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCH
Confidence 999999999999988873 45689999999999999999975 78999999999999999999999999988 599
Q ss_pred hhhhhhhcccccCCCcceE-------EEEeCCCC-chHHHHHHHHHHHHc
Q psy1604 600 DEYVHRIGRTGRVGNKGRA-------TSFYDPDQ-DGAIAKDLVRILEQA 641 (693)
Q Consensus 600 ~~y~Qr~GRagR~G~~G~~-------~~~~~~~~-d~~~~~~l~~~l~~~ 641 (693)
.+|+||+||++|.+..|.+ +.|++++. +..+...-.++|.+.
T Consensus 575 ~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~q 624 (732)
T TIGR00603 575 RQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQ 624 (732)
T ss_pred HHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHC
Confidence 9999999999999877765 77777653 333444445555544
No 74
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=9.2e-33 Score=317.21 Aligned_cols=401 Identities=17% Similarity=0.170 Sum_probs=232.7
Q ss_pred CCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
.|.|||.+++..++.. ..+|++.++|.|||+.+.+.+...+.... ..++|||||+ .|..||..++.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~---------~~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR---------AERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC---------CCcEEEEcCH-HHHHHHHHHHHHH
Confidence 5999999998877643 48999999999999997665544443322 2379999997 8999999999654
Q ss_pred hcCCCeeEEEEeCCCChHHHH--HHHhcCCcEEEechhhHHHHHh-cCCcCCCceeEEEEccchhhhhCC--c---hHHH
Q psy1604 298 AYSSVLKICLHYGGASSMHFN--RQLEKGCNILVATMGRLKDILD-RGRISLASVRFVVLDEADRMLDMG--F---LGDI 369 (693)
Q Consensus 298 ~~~~~l~~~~~~gg~~~~~~~--~~~~~~~~IlV~Tp~~L~~~l~-~~~~~l~~~~~lVlDEah~l~~~~--~---~~~i 369 (693)
.. +....+.++....... .......+++|+|++.+...-. ...+.-..+++|||||||++.... . +..+
T Consensus 222 F~---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 222 FN---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred hC---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 32 3333332221111000 0112246899999998864211 111223478999999999996321 1 2222
Q ss_pred HHHhccCCCCCCCCcceEEeeccCch-hHHhhhhhhhhhchhhhHHH--------------------Hhhcccccccee-
Q psy1604 370 QHVMQHSTMPDVANRQTLMFSATFPE-TIQKKGCNILVATMGRLKDI--------------------LDRGRISLASVR- 427 (693)
Q Consensus 370 ~~i~~~~~~~~~~~~q~lllSAT~~~-~~~~~~~~~~~~~~~~l~~~--------------------l~~~~~~~~~~~- 427 (693)
..+.. ....++++||||-. ....+...+-+..|.++... +....+......
T Consensus 299 ~~La~-------~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~ 371 (956)
T PRK04914 299 EQLAE-------VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNA 371 (956)
T ss_pred HHHhh-------ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHH
Confidence 22221 24578999999842 22222222222222221100 000000000000
Q ss_pred ---EEEechhhhhhh---cCccc---chhHHhhc----------------ccCCccccccceeecccCchhhhcceEEEE
Q psy1604 428 ---FVVLDEADRMLD---MGFLG---DIQHVMQH----------------STMPDVANRQTLMFSATFPETIQKNYIFIA 482 (693)
Q Consensus 428 ---~~~~d~~~~~~~---~~~~~---~~~~~~~~----------------~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~ 482 (693)
.+..+....++. ..... ........ ......+.+........+++.....+....
T Consensus 372 l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~ 451 (956)
T PRK04914 372 LGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSL 451 (956)
T ss_pred HHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhH
Confidence 000000000000 00000 00000000 000111111111111111111100000000
Q ss_pred eec--ccccccceeEEE----EEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHH-hhCCCceEEecCCCCHH
Q psy1604 483 VGI--IGGASTDVVQTI----LEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYL-CETEIATTSIHGSRLQS 555 (693)
Q Consensus 483 ~~~--~~~~~~~~~~~~----~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L-~~~~~~v~~lhg~~~~~ 555 (693)
... .......+.+.+ .......|.+.|.++++.....|+||||+++..++.|++.| ...|+++..+||+|++.
T Consensus 452 ~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~ 531 (956)
T PRK04914 452 EARARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSII 531 (956)
T ss_pred HHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHH
Confidence 000 000000000000 11233568889999999888889999999999999999999 46799999999999999
Q ss_pred HHHHHHHHHhcC--CCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHH
Q psy1604 556 QREQAIHDFKTK--KMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKD 633 (693)
Q Consensus 556 ~R~~~~~~F~~g--~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~ 633 (693)
+|+++++.|+++ ..+|||||+++++|+|++.+++||+||+|||+..|.||+||++|.|+++.+.+++... ..+....
T Consensus 532 eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~-~~t~~e~ 610 (956)
T PRK04914 532 ERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL-EGTAQER 610 (956)
T ss_pred HHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC-CCCHHHH
Confidence 999999999984 5999999999999999999999999999999999999999999999999887777543 3445666
Q ss_pred HHHHHHHc
Q psy1604 634 LVRILEQA 641 (693)
Q Consensus 634 l~~~l~~~ 641 (693)
+.+++.+.
T Consensus 611 i~~~~~~~ 618 (956)
T PRK04914 611 LFRWYHEG 618 (956)
T ss_pred HHHHHhhh
Confidence 66666553
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.9e-31 Score=281.12 Aligned_cols=308 Identities=18% Similarity=0.219 Sum_probs=192.6
Q ss_pred HHHhhhhhhhcCCC--EEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcC-
Q psy1604 224 IQKYAIPAGLEGRD--LMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYS- 300 (693)
Q Consensus 224 ~Q~~ai~~il~g~~--vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~- 300 (693)
+|.++++.+.++.+ +++++|||||||.+|++|++.. ..++++++|+++|+.|+++.+.++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------ENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------CCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 59999999998864 7889999999999999998841 125799999999999999999887632
Q ss_pred ---CCeeEEEEeCCCChH--HH-----------------H-HHHhcCCcEEEechhhHHHHHhcCC-----c---CCCce
Q psy1604 301 ---SVLKICLHYGGASSM--HF-----------------N-RQLEKGCNILVATMGRLKDILDRGR-----I---SLASV 349 (693)
Q Consensus 301 ---~~l~~~~~~gg~~~~--~~-----------------~-~~~~~~~~IlV~Tp~~L~~~l~~~~-----~---~l~~~ 349 (693)
....+..+.|....+ .. + ......++|+++||+.|..++.... . .+.++
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 245555555542221 00 0 1112468899999999987665321 1 25789
Q ss_pred eEEEEccchhhhhCCchH-----HHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhcccccc
Q psy1604 350 RFVVLDEADRMLDMGFLG-----DIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLA 424 (693)
Q Consensus 350 ~~lVlDEah~l~~~~~~~-----~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 424 (693)
++|||||+|.+....... ....++.... ...+++++|||+++.+........ . .
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~i~lSAT~~~~~~~~l~~~~--------------~--~- 205 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE----CRRKFVFLSATPDPALILRLQNAK--------------Q--A- 205 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhh----cCCcEEEEecCCCHHHHHHHHhcc--------------c--c-
Confidence 999999999986433211 2222222111 246999999999876544322110 0 0
Q ss_pred ceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhh-cceEEEEeecccccccceeEEEEEccch
Q psy1604 425 SVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQ-KNYIFIAVGIIGGASTDVVQTILEVPKQ 503 (693)
Q Consensus 425 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (693)
.......+... +.. ++.+ .+..... ..+. ...+.+...+.. ...
T Consensus 206 ~~~~~~v~g~~-~~~----------------~~~~---------~~~~~~~~~~~~--------~~~~~i~~~~~~-~~~ 250 (357)
T TIGR03158 206 GVKIAPIDGEK-YQF----------------PDNP---------ELEADNKTQSFR--------PVLPPVELELIP-APD 250 (357)
T ss_pred CceeeeecCcc-ccc----------------CCCh---------hhhccccccccc--------eeccceEEEEEe-CCc
Confidence 00000000000 000 0000 0000000 0000 000111122221 111
Q ss_pred hH---HHHHHH----HHhccCCCcEEEEecChHhHHHHHHHHhhCC--CceEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy1604 504 QK---KKKLLE----LLREKDEDGVIVFVSTIRNADFIACYLCETE--IATTSIHGSRLQSQREQAIHDFKTKKMKVLVA 574 (693)
Q Consensus 504 ~k---~~~L~~----~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~--~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVa 574 (693)
.| +..+.+ .++....+++||||++++.++.++..|++.+ +.+..+||.+++.+|.++ ++.+||||
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVa 324 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLG 324 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEE
Confidence 22 222222 2233456789999999999999999998764 578899999999998754 37899999
Q ss_pred eCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccc
Q psy1604 575 TAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTG 610 (693)
Q Consensus 575 T~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRag 610 (693)
|+++++||||+.+ +|| ++ |.+.+.|+||+||+|
T Consensus 325 Tdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 325 TSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999999999976 666 55 899999999999997
No 76
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=7.8e-32 Score=313.23 Aligned_cols=305 Identities=20% Similarity=0.304 Sum_probs=202.2
Q ss_pred CHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCC----HHHHHHHHHHHHH-
Q psy1604 222 TPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPT----RELVMQIHEVACK- 296 (693)
Q Consensus 222 ~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Pt----r~La~Q~~~~~~~- 296 (693)
+.+..+.+..+.+++.++++|+||||||.+ +|.+...... ....++++..|. ++||.++.+++..
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~--------g~~g~I~~TQPRRlAArsLA~RVA~El~~~ 145 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGR--------GVKGLIGHTQPRRLAARTVANRIAEELETE 145 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCC--------CCCCceeeCCCcHHHHHHHHHHHHHHHhhh
Confidence 344556667777788899999999999994 6744222111 112356667785 4777777777764
Q ss_pred HhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccch-hhhhCCchHH-HHHHhc
Q psy1604 297 YAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD-RMLDMGFLGD-IQHVMQ 374 (693)
Q Consensus 297 ~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah-~l~~~~~~~~-i~~i~~ 374 (693)
++...+..+ . ...+...+++|+|+|||+|++.+.... .++++++||||||| ++++.+|... +..++
T Consensus 146 lG~~VGY~v-------r---f~~~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL- 213 (1294)
T PRK11131 146 LGGCVGYKV-------R---FNDQVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELL- 213 (1294)
T ss_pred hcceeceee-------c---CccccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhh-
Confidence 322222111 0 112234578999999999999988765 48999999999999 6888777543 22222
Q ss_pred cCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhccc
Q psy1604 375 HSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHST 454 (693)
Q Consensus 375 ~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 454 (693)
+..++.|+|+||||++.+ .+...|. . .. .+.++.
T Consensus 214 ----~~rpdlKvILmSATid~e--~fs~~F~-~-----------------ap-vI~V~G--------------------- 247 (1294)
T PRK11131 214 ----PRRPDLKVIITSATIDPE--RFSRHFN-N-----------------AP-IIEVSG--------------------- 247 (1294)
T ss_pred ----hcCCCceEEEeeCCCCHH--HHHHHcC-C-----------------CC-EEEEcC---------------------
Confidence 223478999999999643 2222220 0 00 000000
Q ss_pred CCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHH---hccCCCcEEEEecChHhH
Q psy1604 455 MPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELL---REKDEDGVIVFVSTIRNA 531 (693)
Q Consensus 455 ~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l---~~~~~~kvLVF~~s~~~a 531 (693)
+ +.+ +...|..... . ........+..++..+ .....+.+|||++++.++
T Consensus 248 ------r-------~~p--Vei~y~p~~~-------~------~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EI 299 (1294)
T PRK11131 248 ------R-------TYP--VEVRYRPIVE-------E------ADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREI 299 (1294)
T ss_pred ------c-------ccc--ceEEEeeccc-------c------cchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHH
Confidence 0 000 0001110000 0 0000122333333332 234567899999999999
Q ss_pred HHHHHHHhhCCCc---eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCC-------------
Q psy1604 532 DFIACYLCETEIA---TTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDL------------- 595 (693)
Q Consensus 532 ~~l~~~L~~~~~~---v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~------------- 595 (693)
+.+++.|...+++ +..+||+|++.+|..+++. .|..+|||||+++++|||||++++||++++
T Consensus 300 e~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~ 377 (1294)
T PRK11131 300 RDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQ 377 (1294)
T ss_pred HHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcc
Confidence 9999999987664 6789999999999999886 578999999999999999999999999863
Q ss_pred --C---CChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 596 --P---QEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 596 --p---~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
| .|.++|.||+|||||. ++|.|+.+|+.+
T Consensus 378 ~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~ 411 (1294)
T PRK11131 378 RLPIEPISQASANQRKGRCGRV-SEGICIRLYSED 411 (1294)
T ss_pred cCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHH
Confidence 3 3568999999999999 899999999843
No 77
>KOG0351|consensus
Probab=99.97 E-value=5.1e-31 Score=299.88 Aligned_cols=326 Identities=19% Similarity=0.220 Sum_probs=240.5
Q ss_pred HHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHH
Q psy1604 209 LVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVM 288 (693)
Q Consensus 209 l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~ 288 (693)
.......+|+..+++-|.++|..++.|+++++.+|||.||+++|.+|++ ...+-.|||.|..+|++
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~--------------l~~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL--------------LLGGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc--------------ccCCceEEeccHHHHHH
Confidence 3333445799999999999999999999999999999999999999987 22336899999999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEeCCCChHHHHHH---Hh-c--CCcEEEechhhHHHHH--hcCCcCCCc---eeEEEEccc
Q psy1604 289 QIHEVACKYAYSSVLKICLHYGGASSMHFNRQ---LE-K--GCNILVATMGRLKDIL--DRGRISLAS---VRFVVLDEA 357 (693)
Q Consensus 289 Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~---~~-~--~~~IlV~Tp~~L~~~l--~~~~~~l~~---~~~lVlDEa 357 (693)
.+...+.. .++....+.++.....+... +. . ..+|++.||+++...- ......+.. +.++|+|||
T Consensus 319 DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEA 394 (941)
T KOG0351|consen 319 DQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEA 394 (941)
T ss_pred HHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHH
Confidence 88776633 45777778777766433222 22 2 5799999999986422 111123344 899999999
Q ss_pred hhhhhCC--chHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhh
Q psy1604 358 DRMLDMG--FLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 435 (693)
Q Consensus 358 h~l~~~~--~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~ 435 (693)
|....|+ |.+++..+.... ...+...+|.+|||....++.-.... .++....
T Consensus 395 HCVSqWgHdFRp~Yk~l~~l~--~~~~~vP~iALTATAT~~v~~DIi~~--------------L~l~~~~---------- 448 (941)
T KOG0351|consen 395 HCVSQWGHDFRPSYKRLGLLR--IRFPGVPFIALTATATERVREDVIRS--------------LGLRNPE---------- 448 (941)
T ss_pred HHhhhhcccccHHHHHHHHHH--hhCCCCCeEEeehhccHHHHHHHHHH--------------hCCCCcc----------
Confidence 9999886 667766654332 12234789999999876665432221 1110000
Q ss_pred hhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHH-h
Q psy1604 436 RMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELL-R 514 (693)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l-~ 514 (693)
+..+. +....+...+. .-........+...+ .
T Consensus 449 ----------------------------~~~~s-----fnR~NL~yeV~--------------~k~~~~~~~~~~~~~~~ 481 (941)
T KOG0351|consen 449 ----------------------------LFKSS-----FNRPNLKYEVS--------------PKTDKDALLDILEESKL 481 (941)
T ss_pred ----------------------------eeccc-----CCCCCceEEEE--------------eccCccchHHHHHHhhh
Confidence 00000 11111111110 000011122222333 3
Q ss_pred ccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcC
Q psy1604 515 EKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYD 594 (693)
Q Consensus 515 ~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d 594 (693)
.......||||.++.+|+.++..|+..++.+..+|++|+..+|+.+.++|..++++|+|||=++++|||.|+|+.||||.
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~ 561 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYS 561 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECC
Confidence 36777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 595 LPQEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 595 ~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
+|+|++.|.|-+|||||.|....|++||...
T Consensus 562 lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 562 LPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred CchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 9999999999999999999999999999976
No 78
>KOG0352|consensus
Probab=99.97 E-value=1.2e-30 Score=260.45 Aligned_cols=328 Identities=18% Similarity=0.220 Sum_probs=228.8
Q ss_pred HHHHHHHh-CCCCCC-CHHHHhhhhhhhcC-CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCH
Q psy1604 208 ILVKNLKK-SNYTKP-TPIQKYAIPAGLEG-RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTR 284 (693)
Q Consensus 208 ~l~~~l~~-~g~~~p-~~~Q~~ai~~il~g-~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr 284 (693)
.+.+.|++ +|+.++ ++.|..|+..+..+ +|+.+++|||+||+++|.||.|- .+...||+.|..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~--------------~~gITIV~SPLi 71 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV--------------HGGITIVISPLI 71 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH--------------hCCeEEEehHHH
Confidence 34455554 466654 78999999988865 79999999999999999999883 223689999999
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH------hcCCcEEEechhhHHH-----HHhcCCcCCCceeEEE
Q psy1604 285 ELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL------EKGCNILVATMGRLKD-----ILDRGRISLASVRFVV 353 (693)
Q Consensus 285 ~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~------~~~~~IlV~Tp~~L~~-----~l~~~~~~l~~~~~lV 353 (693)
+|+..+.+.+.++. +.+..+....+..+..+.+ +.+..+++.||+.... +|+. -.+-..+.|+|
T Consensus 72 ALIkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~Y~v 146 (641)
T KOG0352|consen 72 ALIKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-LANRDVLRYIV 146 (641)
T ss_pred HHHHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-HhhhceeeeEE
Confidence 99999999888863 3333333333333333332 2357899999987532 2221 12234589999
Q ss_pred EccchhhhhCC--chHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhh-hhhhchhhhHHHHhhccccccceeEEE
Q psy1604 354 LDEADRMLDMG--FLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCN-ILVATMGRLKDILDRGRISLASVRFVV 430 (693)
Q Consensus 354 lDEah~l~~~~--~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~ 430 (693)
+||||...+|| |.+++..+-.. ....++...+.++||-...++.-... +.+..|-.
T Consensus 147 VDEAHCVSQWGHDFRPDYL~LG~L--RS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVA------------------- 205 (641)
T KOG0352|consen 147 VDEAHCVSQWGHDFRPDYLTLGSL--RSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVA------------------- 205 (641)
T ss_pred echhhhHhhhccccCcchhhhhhH--HhhCCCCceEEeecccChhHHHHHHHHHhhcCcHH-------------------
Confidence 99999999987 55555544322 22234778899999988777653211 10000000
Q ss_pred echhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHH
Q psy1604 431 LDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLL 510 (693)
Q Consensus 431 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~ 510 (693)
++...++.+++..+..+ .. .-.+-...|.
T Consensus 206 ---------------------------------iFkTP~FR~NLFYD~~~--------------K~----~I~D~~~~La 234 (641)
T KOG0352|consen 206 ---------------------------------IFKTPTFRDNLFYDNHM--------------KS----FITDCLTVLA 234 (641)
T ss_pred ---------------------------------hccCcchhhhhhHHHHH--------------HH----HhhhHhHhHH
Confidence 00000000000000000 00 0001112222
Q ss_pred HHHhc-------------cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc
Q psy1604 511 ELLRE-------------KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV 577 (693)
Q Consensus 511 ~~l~~-------------~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v 577 (693)
++... ...+--||||.|++.|+.++-.|...|+++..+|.++...+|.++.+.|.+++..|++||..
T Consensus 235 DF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~S 314 (641)
T KOG0352|consen 235 DFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVS 314 (641)
T ss_pred HHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEec
Confidence 22211 11233699999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCC
Q psy1604 578 ASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQ 626 (693)
Q Consensus 578 ~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~ 626 (693)
+++|+|-|+|++|||+++|.|.+-|.|-.|||||.|.+..|-++|..++
T Consensus 315 FGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D 363 (641)
T KOG0352|consen 315 FGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQD 363 (641)
T ss_pred cccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccc
Confidence 9999999999999999999999999999999999999999999998543
No 79
>KOG0952|consensus
Probab=99.97 E-value=6.9e-30 Score=280.20 Aligned_cols=345 Identities=20% Similarity=0.228 Sum_probs=234.7
Q ss_pred hCCCCCCCHHHHhhhhhhhc-CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 215 KSNYTKPTPIQKYAIPAGLE-GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 215 ~~g~~~p~~~Q~~ai~~il~-g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
.++|..+..+|..++|.+.+ +.|+|||||||+|||..|+|.||+.+.+...... ......++++++|+++||..+.+.
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~-i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGD-IAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccc-cccCCceEEEEechHHHHHHHHHH
Confidence 35888999999999999984 6799999999999999999999998876332211 124567999999999999999999
Q ss_pred HHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC---cCCCceeEEEEccchhhhhCCchHHHH
Q psy1604 294 ACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR---ISLASVRFVVLDEADRMLDMGFLGDIQ 370 (693)
Q Consensus 294 ~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~---~~l~~~~~lVlDEah~l~~~~~~~~i~ 370 (693)
+.+-....++++..++|+....... -..++|+|+||+++.-.-++.. ..++.+.+|||||+|.+.+ ..++.++
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHH
Confidence 8887777789999999988655433 3458999999999854433322 2356799999999998754 4566666
Q ss_pred HHhccCC---CCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchh
Q psy1604 371 HVMQHST---MPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQ 447 (693)
Q Consensus 371 ~i~~~~~---~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 447 (693)
.|..+.. -......+++++|||+|+-. .++ .++.-+. .......|.
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~e-DvA------------~fL~vn~----~~glfsFd~-------------- 308 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNYE-DVA------------RFLRVNP----YAGLFSFDQ-------------- 308 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCHH-HHH------------HHhcCCC----ccceeeecc--------------
Confidence 6654321 02224678999999999743 221 1211110 000000000
Q ss_pred HHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecC
Q psy1604 448 HVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVST 527 (693)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s 527 (693)
. .+..++.. ...+.......+ ....-.+...+.+.+.+. .+.+++|||.+
T Consensus 309 ---------------------~----yRPvpL~~--~~iG~k~~~~~~-~~~~~d~~~~~kv~e~~~--~g~qVlvFvhs 358 (1230)
T KOG0952|consen 309 ---------------------R----YRPVPLTQ--GFIGIKGKKNRQ-QKKNIDEVCYDKVVEFLQ--EGHQVLVFVHS 358 (1230)
T ss_pred ---------------------c----ccccceee--eEEeeecccchh-hhhhHHHHHHHHHHHHHH--cCCeEEEEEec
Confidence 0 00111100 000000000000 000111233444455554 57789999999
Q ss_pred hHhHHHHHHHHhhCC-----------------------CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCC
Q psy1604 528 IRNADFIACYLCETE-----------------------IATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDI 584 (693)
Q Consensus 528 ~~~a~~l~~~L~~~~-----------------------~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDi 584 (693)
+...-..++.|.+.. .....+|++|...+|..+.+.|+.|.++||+||..++.|+|+
T Consensus 359 R~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNL 438 (1230)
T KOG0952|consen 359 RNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNL 438 (1230)
T ss_pred ChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCC
Confidence 999888888875431 235678999999999999999999999999999999999999
Q ss_pred CCCCEEE----EcCCCC------ChhhhhhhhcccccCC--CcceEEEEeCCC
Q psy1604 585 KGIRHVI----NYDLPQ------EIDEYVHRIGRTGRVG--NKGRATSFYDPD 625 (693)
Q Consensus 585 p~v~~VI----~~d~p~------s~~~y~Qr~GRagR~G--~~G~~~~~~~~~ 625 (693)
|+-.++| .||... +..+.+|.+|||||.. ..|.++++.+.+
T Consensus 439 PA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 439 PAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred cceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 9654444 244433 5677899999999964 568888877643
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1.3e-28 Score=280.00 Aligned_cols=316 Identities=17% Similarity=0.159 Sum_probs=208.0
Q ss_pred CCCHHHHhhhhhhhcC---CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLEG---RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g---~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
.|+++|+++++.+.++ +++++.++||||||.+|+.++.+.+.. +.++|||+||++|+.|+.+.+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----------g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----------GKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 6899999999999874 789999999999999998887766632 34799999999999999999987
Q ss_pred HhcCCCeeEEEEeCCCChHHHHHH----HhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCc---hHHH
Q psy1604 297 YAYSSVLKICLHYGGASSMHFNRQ----LEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGF---LGDI 369 (693)
Q Consensus 297 ~~~~~~l~~~~~~gg~~~~~~~~~----~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~---~~~i 369 (693)
.. +.++..++++.+..+.... ....++|+|+|+..+. ..+.++++||+||+|....... ....
T Consensus 213 ~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 213 RF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred Hh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 64 3577888888765543332 3346899999998774 4678999999999997643221 1111
Q ss_pred HHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHH
Q psy1604 370 QHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHV 449 (693)
Q Consensus 370 ~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 449 (693)
..+.... ....+.+++++|||++.+....+..- .+..+.+....
T Consensus 283 r~va~~r--a~~~~~~~il~SATps~~s~~~~~~g--------------------~~~~~~l~~r~-------------- 326 (679)
T PRK05580 283 RDLAVVR--AKLENIPVVLGSATPSLESLANAQQG--------------------RYRLLRLTKRA-------------- 326 (679)
T ss_pred HHHHHHH--hhccCCCEEEEcCCCCHHHHHHHhcc--------------------ceeEEEecccc--------------
Confidence 2221110 11247799999999875544322110 00000000000
Q ss_pred hhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecC
Q psy1604 450 MQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVST 527 (693)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s 527 (693)
. ... + .....+..... ... .....-...+++.+++ ..+.++|||+++
T Consensus 327 ----------~------~~~----~-p~v~~id~~~~------~~~----~~~~~ls~~l~~~i~~~l~~g~qvll~~nr 375 (679)
T PRK05580 327 ----------G------GAR----L-PEVEIIDMREL------LRG----ENGSFLSPPLLEAIKQRLERGEQVLLFLNR 375 (679)
T ss_pred ----------c------cCC----C-CeEEEEechhh------hhh----cccCCCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 0 000 0 00000000000 000 0000001223333332 235567777764
Q ss_pred h------------------------------------------------------------HhHHHHHHHHhhC--CCce
Q psy1604 528 I------------------------------------------------------------RNADFIACYLCET--EIAT 545 (693)
Q Consensus 528 ~------------------------------------------------------------~~a~~l~~~L~~~--~~~v 545 (693)
+ ..++.+++.|.+. +.++
T Consensus 376 rGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v 455 (679)
T PRK05580 376 RGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARI 455 (679)
T ss_pred CCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcE
Confidence 2 2456777777765 6789
Q ss_pred EEecCCCC--HHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEc--CCCCC----------hhhhhhhhccccc
Q psy1604 546 TSIHGSRL--QSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINY--DLPQE----------IDEYVHRIGRTGR 611 (693)
Q Consensus 546 ~~lhg~~~--~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~--d~p~s----------~~~y~Qr~GRagR 611 (693)
..+|+++. ..++++++++|++|+.+|||+|+++++|+|+|++++|+.+ |.+.+ ...|.|++||+||
T Consensus 456 ~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR 535 (679)
T PRK05580 456 LRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGR 535 (679)
T ss_pred EEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccC
Confidence 99999986 4678999999999999999999999999999999998654 44432 3679999999999
Q ss_pred CCCcceEEEEeC
Q psy1604 612 VGNKGRATSFYD 623 (693)
Q Consensus 612 ~G~~G~~~~~~~ 623 (693)
.+..|.+++...
T Consensus 536 ~~~~g~viiqT~ 547 (679)
T PRK05580 536 AEKPGEVLIQTY 547 (679)
T ss_pred CCCCCEEEEEeC
Confidence 999999997654
No 81
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.7e-29 Score=295.10 Aligned_cols=315 Identities=19% Similarity=0.268 Sum_probs=206.2
Q ss_pred CCCCCCHHH---HhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 217 NYTKPTPIQ---KYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 217 g~~~p~~~Q---~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
.|...-|+. .+.+..+.+++.++++|+||||||.. +|.+.. ..+. ....++++..|.|.-|..++..
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~ll--e~~~------~~~~~I~~tQPRRlAA~svA~R 130 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICL--ELGR------GSHGLIGHTQPRRLAARTVAQR 130 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHH--HcCC------CCCceEecCCccHHHHHHHHHH
Confidence 444434443 35566666778899999999999995 564422 2111 1234788899999888888877
Q ss_pred HHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccch-hhhhCCchHH-HHH
Q psy1604 294 ACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD-RMLDMGFLGD-IQH 371 (693)
Q Consensus 294 ~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah-~l~~~~~~~~-i~~ 371 (693)
+.+... ..+...+|.... .......+..|.|+|+|+|++.+.... .++++++||||||| ++++.++.-. +..
T Consensus 131 vA~elg---~~lG~~VGY~vR--~~~~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~ 204 (1283)
T TIGR01967 131 IAEELG---TPLGEKVGYKVR--FHDQVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQ 204 (1283)
T ss_pred HHHHhC---CCcceEEeeEEc--CCcccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHH
Confidence 766442 222222332110 111224567899999999999887654 48999999999999 6888776544 444
Q ss_pred HhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhh
Q psy1604 372 VMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQ 451 (693)
Q Consensus 372 i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 451 (693)
++.. .++.++|+||||++.. .+...|. .. ..+.+..
T Consensus 205 il~~-----rpdLKlIlmSATld~~--~fa~~F~-~a------------------pvI~V~G------------------ 240 (1283)
T TIGR01967 205 LLPR-----RPDLKIIITSATIDPE--RFSRHFN-NA------------------PIIEVSG------------------ 240 (1283)
T ss_pred HHhh-----CCCCeEEEEeCCcCHH--HHHHHhc-CC------------------CEEEECC------------------
Confidence 4332 2478999999998642 2222220 00 0000000
Q ss_pred cccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHh---ccCCCcEEEEecCh
Q psy1604 452 HSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLR---EKDEDGVIVFVSTI 528 (693)
Q Consensus 452 ~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~---~~~~~kvLVF~~s~ 528 (693)
+ +.| ....|...... + ......+...+...+. ....+.+|||++++
T Consensus 241 ---------r-------~~P--Vev~Y~~~~~~----------~---~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 241 ---------R-------TYP--VEVRYRPLVEE----------Q---EDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred ---------C-------ccc--ceeEEeccccc----------c---cchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 0 000 00011000000 0 0001123333333332 23567899999999
Q ss_pred HhHHHHHHHHhhCC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCC--------
Q psy1604 529 RNADFIACYLCETE---IATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQ-------- 597 (693)
Q Consensus 529 ~~a~~l~~~L~~~~---~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~-------- 597 (693)
.+++.+++.|.+.+ +.+..+||+|++++|.++++.+ +..+|||||+++++|||||++++||++++++
T Consensus 290 ~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~ 367 (1283)
T TIGR01967 290 REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRT 367 (1283)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccccc
Confidence 99999999998764 4588999999999999987654 3479999999999999999999999998543
Q ss_pred ----------ChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 598 ----------EIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 598 ----------s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
|.++|.||.|||||.+ +|.|+.+|+.+
T Consensus 368 ~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 368 KVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred CccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHH
Confidence 6689999999999996 99999999843
No 82
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.9e-28 Score=261.49 Aligned_cols=314 Identities=20% Similarity=0.266 Sum_probs=230.3
Q ss_pred HhCCCCCCCHHHHhhhhhhhcC------CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHH
Q psy1604 214 KKSNYTKPTPIQKYAIPAGLEG------RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELV 287 (693)
Q Consensus 214 ~~~g~~~p~~~Q~~ai~~il~g------~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 287 (693)
....| +||..|++++..|... .+-++++..|||||++++++++..+ ..+.++..++||-.||
T Consensus 257 ~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai-----------~~G~Q~ALMAPTEILA 324 (677)
T COG1200 257 AALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI-----------EAGYQAALMAPTEILA 324 (677)
T ss_pred HhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH-----------HcCCeeEEeccHHHHH
Confidence 44455 7999999999999854 4679999999999999999999877 3456799999999999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHH---Hhc-CCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhC
Q psy1604 288 MQIHEVACKYAYSSVLKICLHYGGASSMHFNRQ---LEK-GCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDM 363 (693)
Q Consensus 288 ~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~---~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~ 363 (693)
.|.++.+.+|....++++..++|.......... +.+ ..+|+|+|...+.+ .+.++++.++|+||=||..-.
T Consensus 325 ~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~LgLVIiDEQHRFGV~ 399 (677)
T COG1200 325 EQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNLGLVIIDEQHRFGVH 399 (677)
T ss_pred HHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecceeEEEEeccccccHH
Confidence 999999999999989999999987765444333 333 48999999977755 667899999999999987422
Q ss_pred CchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcc
Q psy1604 364 GFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFL 443 (693)
Q Consensus 364 ~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~ 443 (693)
-+..+..... ..++++.||||+=++...+...- +...-.+|+
T Consensus 400 -----QR~~L~~KG~---~~Ph~LvMTATPIPRTLAlt~fg--------------------DldvS~IdE---------- 441 (677)
T COG1200 400 -----QRLALREKGE---QNPHVLVMTATPIPRTLALTAFG--------------------DLDVSIIDE---------- 441 (677)
T ss_pred -----HHHHHHHhCC---CCCcEEEEeCCCchHHHHHHHhc--------------------cccchhhcc----------
Confidence 2333322211 05789999999744322211000 000000000
Q ss_pred cchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc--cCCCcE
Q psy1604 444 GDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE--KDEDGV 521 (693)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~--~~~~kv 521 (693)
+|.. . ..+...+ -...+...+++.+.. ..+.++
T Consensus 442 --------------------------lP~G--R--------------kpI~T~~---i~~~~~~~v~e~i~~ei~~GrQa 476 (677)
T COG1200 442 --------------------------LPPG--R--------------KPITTVV---IPHERRPEVYERIREEIAKGRQA 476 (677)
T ss_pred --------------------------CCCC--C--------------CceEEEE---eccccHHHHHHHHHHHHHcCCEE
Confidence 0000 0 0111111 122344455555544 467788
Q ss_pred EEEecChHhH--------HHHHHHHhhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEE
Q psy1604 522 IVFVSTIRNA--------DFIACYLCET--EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVI 591 (693)
Q Consensus 522 LVF~~s~~~a--------~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI 591 (693)
.+.|+-.++. ..+++.|+.. ++++..+||.|+..++++++.+|++|+.+|||||.+.+.|+|+|+.+++|
T Consensus 477 Y~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV 556 (677)
T COG1200 477 YVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV 556 (677)
T ss_pred EEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE
Confidence 8889876554 4556666643 56799999999999999999999999999999999999999999999999
Q ss_pred EcCCCC-ChhhhhhhhcccccCCCcceEEEEeCCCCc
Q psy1604 592 NYDLPQ-EIDEYVHRIGRTGRVGNKGRATSFYDPDQD 627 (693)
Q Consensus 592 ~~d~p~-s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d 627 (693)
.++.-+ -.+++-|-.||+||.+.++.|++++.+...
T Consensus 557 Ie~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~ 593 (677)
T COG1200 557 IENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLS 593 (677)
T ss_pred EechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCC
Confidence 888653 789999999999999999999999997653
No 83
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=5.2e-29 Score=270.30 Aligned_cols=329 Identities=20% Similarity=0.231 Sum_probs=211.3
Q ss_pred CCCCCHHHHhhhhhhhc----CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 218 YTKPTPIQKYAIPAGLE----GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 218 ~~~p~~~Q~~ai~~il~----g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
...|++||++++..+.+ .+..++++|||+|||..++..+- .+ +.++||||||++|+.||++.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~-------------~~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-EL-------------KRSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-Hh-------------cCCEEEEECcHHHHHHHHHH
Confidence 34799999999999998 89999999999999998655443 33 12389999999999999987
Q ss_pred HHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHh
Q psy1604 294 ACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVM 373 (693)
Q Consensus 294 ~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~ 373 (693)
+.++.... ..+..+ ++.... ... ..|.|+|.+.+........+....+++||+||||++....+......+.
T Consensus 100 ~~~~~~~~-~~~g~~-~~~~~~-----~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~ 171 (442)
T COG1061 100 LKKFLLLN-DEIGIY-GGGEKE-----LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLS 171 (442)
T ss_pred HHHhcCCc-ccccee-cCceec-----cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhh
Confidence 77765332 122223 332211 111 4699999999987421112233479999999999997665443333322
Q ss_pred ccCCCCCCCCcc-eEEeeccCchhHHhhhhhh-h----hhchhhhHHHHhhccccccceeEEEe--chhhhhhhcCcccc
Q psy1604 374 QHSTMPDVANRQ-TLMFSATFPETIQKKGCNI-L----VATMGRLKDILDRGRISLASVRFVVL--DEADRMLDMGFLGD 445 (693)
Q Consensus 374 ~~~~~~~~~~~q-~lllSAT~~~~~~~~~~~~-~----~~~~~~l~~~l~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~ 445 (693)
. .. +++||||++..-......+ . ..........+....+....+..... ..............
T Consensus 172 ~---------~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~ 242 (442)
T COG1061 172 A---------AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESAR 242 (442)
T ss_pred c---------ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhh
Confidence 2 22 8999999873321111111 0 01112223333322222222111111 00000000000000
Q ss_pred hhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc-CCCcEEEE
Q psy1604 446 IQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK-DEDGVIVF 524 (693)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~-~~~kvLVF 524 (693)
......... . ................+...+..++... ...+++||
T Consensus 243 ~~~~~~~~~------------------------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif 289 (442)
T COG1061 243 FRELLRARG------------------------T---------LRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIF 289 (442)
T ss_pred hhhhhhhhh------------------------h---------hhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEE
Confidence 000000000 0 0000000001112344555566666554 47799999
Q ss_pred ecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhh
Q psy1604 525 VSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVH 604 (693)
Q Consensus 525 ~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Q 604 (693)
+.+..+++.++..|...+. +..+.+..+..+|..+++.|+.|.+++||++.++.+|+|+|+++++|......|...|+|
T Consensus 290 ~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q 368 (442)
T COG1061 290 ASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQ 368 (442)
T ss_pred eccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHH
Confidence 9999999999999988887 889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccc
Q psy1604 605 RIGRTGR 611 (693)
Q Consensus 605 r~GRagR 611 (693)
|+||.-|
T Consensus 369 ~lGR~LR 375 (442)
T COG1061 369 RLGRGLR 375 (442)
T ss_pred Hhhhhcc
Confidence 9999999
No 84
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=8.7e-28 Score=268.72 Aligned_cols=390 Identities=17% Similarity=0.187 Sum_probs=249.9
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.|+++|.-.--.+..|+ |+.++||+|||++|.+|++..++.. ..++||+||++||.|.++++..+..
T Consensus 82 ~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G-----------~~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISG-----------RGVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 78888887776666554 8999999999999999999777543 2589999999999999999999999
Q ss_pred CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcCC-cCC-----CceeEEEEccchhhhhC-C-------
Q psy1604 300 SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRGR-ISL-----ASVRFVVLDEADRMLDM-G------- 364 (693)
Q Consensus 300 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~-~~l-----~~~~~lVlDEah~l~~~-~------- 364 (693)
..++.+.+++|+.+.......+ .+||+|+||++| .++|+.+. +.+ ..+.++||||||+|+=. .
T Consensus 149 ~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIIS 226 (896)
T PRK13104 149 FLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIIS 226 (896)
T ss_pred ccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeee
Confidence 9999999999998876654443 689999999999 99998763 334 57999999999998721 1
Q ss_pred --------chHHHHHHhccCCC----------CCCCCcceEEeeccCchhHHhhhhh--------hhh--h---chhhhH
Q psy1604 365 --------FLGDIQHVMQHSTM----------PDVANRQTLMFSATFPETIQKKGCN--------ILV--A---TMGRLK 413 (693)
Q Consensus 365 --------~~~~i~~i~~~~~~----------~~~~~~q~lllSAT~~~~~~~~~~~--------~~~--~---~~~~l~ 413 (693)
.+..+..+...+.. .-....+.+.||-.=-..+..+... .+. . ....+.
T Consensus 227 g~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~ 306 (896)
T PRK13104 227 GAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVN 306 (896)
T ss_pred CCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHH
Confidence 12222222221110 0011223343433211111111100 000 0 011122
Q ss_pred HHHhhccccccceeEEEechhhhhhh---------cCcccchhHHhhcccCCccccccceeecccCchhh----------
Q psy1604 414 DILDRGRISLASVRFVVLDEADRMLD---------MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETI---------- 474 (693)
Q Consensus 414 ~~l~~~~~~~~~~~~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l---------- 474 (693)
..+....+...+..|++.|..-.+.+ ..|..-+...+....--........+-+.|+..-+
T Consensus 307 ~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMT 386 (896)
T PRK13104 307 AALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMT 386 (896)
T ss_pred HHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCC
Confidence 33333344455555555443211111 11211111111111111111111111112211111
Q ss_pred ----------hcceEEEEeecccccccce---eEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHh
Q psy1604 475 ----------QKNYIFIAVGIIGGASTDV---VQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLC 539 (693)
Q Consensus 475 ----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~ 539 (693)
.+-|- ..+-......+.. .....+.....|...+.+.+.. ..+.++||||+++..++.++.+|.
T Consensus 387 GTa~te~~Ef~~iY~-l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~ 465 (896)
T PRK13104 387 GTADTEAYEFQQIYN-LEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLK 465 (896)
T ss_pred CCChhHHHHHHHHhC-CCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 11111 0111111111111 1123344567788888877754 678899999999999999999999
Q ss_pred hCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCC---------------------------------
Q psy1604 540 ETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKG--------------------------------- 586 (693)
Q Consensus 540 ~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~--------------------------------- 586 (693)
+.+++...+|+.+.+.+++.+.+.|+.|. |+|||++++||+||.=
T Consensus 466 ~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (896)
T PRK13104 466 KENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDE 543 (896)
T ss_pred HcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhH
Confidence 99999999999999999999999999994 9999999999999952
Q ss_pred -----CCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCc
Q psy1604 587 -----IRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQD 627 (693)
Q Consensus 587 -----v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d 627 (693)
==|||-...+.|..--.|-.||+||.|.+|.+..|++.+++
T Consensus 544 V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 544 VIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12688888888888889999999999999999999987654
No 85
>KOG0353|consensus
Probab=99.96 E-value=6.8e-29 Score=244.20 Aligned_cols=333 Identities=18% Similarity=0.262 Sum_probs=240.6
Q ss_pred CCCHHHHHHHHh-CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcC
Q psy1604 204 GLREILVKNLKK-SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAP 282 (693)
Q Consensus 204 ~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~P 282 (693)
+.+....+.|+. +..++++|.|..+|...+.+.++++..|||.||+++|.+|+|. ....+||++|
T Consensus 77 pws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~--------------adg~alvi~p 142 (695)
T KOG0353|consen 77 PWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC--------------ADGFALVICP 142 (695)
T ss_pred CCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh--------------cCCceEeech
Confidence 344555555543 3667899999999999999999999999999999999999983 3346899999
Q ss_pred CHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHH---H---hcCCcEEEechhhHHH---HHhc--CCcCCCceeE
Q psy1604 283 TRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQ---L---EKGCNILVATMGRLKD---ILDR--GRISLASVRF 351 (693)
Q Consensus 283 tr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~---~---~~~~~IlV~Tp~~L~~---~l~~--~~~~l~~~~~ 351 (693)
..+|+..+.-.++.++ +....+....+..+..+. + .....+++.||+.+.. ++.+ ..+....+.+
T Consensus 143 lislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 143 LISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred hHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 9999999888888865 333333333333322211 1 1246799999998854 2221 2345667899
Q ss_pred EEEccchhhhhCC--chHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEE
Q psy1604 352 VVLDEADRMLDMG--FLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFV 429 (693)
Q Consensus 352 lVlDEah~l~~~~--~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 429 (693)
|-+||+|....|+ |.+++..+-. ..+..++..+++++||..+.+..-+.+++....
T Consensus 219 iaidevhccsqwghdfr~dy~~l~i--lkrqf~~~~iigltatatn~vl~d~k~il~ie~-------------------- 276 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGI--LKRQFKGAPIIGLTATATNHVLDDAKDILCIEA-------------------- 276 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHH--HHHhCCCCceeeeehhhhcchhhHHHHHHhHHh--------------------
Confidence 9999999999886 4555443311 112234778999999987766554444411000
Q ss_pred EechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHH
Q psy1604 430 VLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKL 509 (693)
Q Consensus 430 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L 509 (693)
.+.|.+. ++...+...+. | .....++-.+.+
T Consensus 277 ---------------------------------~~tf~a~----fnr~nl~yev~----------q--kp~n~dd~~edi 307 (695)
T KOG0353|consen 277 ---------------------------------AFTFRAG----FNRPNLKYEVR----------Q--KPGNEDDCIEDI 307 (695)
T ss_pred ---------------------------------hheeecc----cCCCCceeEee----------e--CCCChHHHHHHH
Confidence 0000011 11111100000 0 011223445666
Q ss_pred HHHHhc-cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCC
Q psy1604 510 LELLRE-KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIR 588 (693)
Q Consensus 510 ~~~l~~-~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~ 588 (693)
.++++. ..+..-||||-++.+++.++..|+.+|+.+..+|..|.+++|.-+-+.|.+|++.|+|||-.+++|||-|+|+
T Consensus 308 ~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvr 387 (695)
T KOG0353|consen 308 AKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVR 387 (695)
T ss_pred HHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCee
Confidence 666665 3455679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhh-------------------------------------------hhcccccCCCcceEEEEeCCC
Q psy1604 589 HVINYDLPQEIDEYVH-------------------------------------------RIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 589 ~VI~~d~p~s~~~y~Q-------------------------------------------r~GRagR~G~~G~~~~~~~~~ 625 (693)
+|||..+|+|++.|.| -.||+||.+.+..|+++|--.
T Consensus 388 fvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 388 FVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred EEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 9999999999999999 679999999999999998743
No 86
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=5.7e-28 Score=278.59 Aligned_cols=372 Identities=16% Similarity=0.196 Sum_probs=222.8
Q ss_pred CCCHHHHhhhhhhh----cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGL----EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 220 ~p~~~Q~~ai~~il----~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
+|+|||.+++..+. ++.+.|++.++|.|||+.. +.++..+.... .....+|||||. +|..||.+++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~-------~~~gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYR-------GITGPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhc-------CCCCCEEEEeCh-HHHHHHHHHHH
Confidence 78999999999876 5778999999999999984 44444444322 112358999996 77899999999
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHH---HhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHH
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQ---LEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHV 372 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~---~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i 372 (693)
+|.. .+++..++|.......... .....+|+|+|++.+..... .+.-..+++|||||||++.+.. ..+...
T Consensus 240 kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~--Sklska 313 (1033)
T PLN03142 240 RFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN--SLLSKT 313 (1033)
T ss_pred HHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--HHHHHH
Confidence 9974 4666666665433222111 12357999999999876432 2223457899999999996532 333444
Q ss_pred hccCCCCCCCCcceEEeeccCc-hhHHhhhhhhhhhchh------hhHHHHhhccccccceeEEEechhhhhhhcCcccc
Q psy1604 373 MQHSTMPDVANRQTLMFSATFP-ETIQKKGCNILVATMG------RLKDILDRGRISLASVRFVVLDEADRMLDMGFLGD 445 (693)
Q Consensus 373 ~~~~~~~~~~~~q~lllSAT~~-~~~~~~~~~~~~~~~~------~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 445 (693)
+.... ....+++|+||- +.+..+...+-...|. .+..++...... .....+...+..+..-+..
T Consensus 314 lr~L~-----a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~---~~~e~i~~L~~~L~pf~LR- 384 (1033)
T PLN03142 314 MRLFS-----TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN---DQQEVVQQLHKVLRPFLLR- 384 (1033)
T ss_pred HHHhh-----cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc---chHHHHHHHHHHhhHHHhh-
Confidence 43322 456799999972 3333332221111111 111111100000 0000000000000000000
Q ss_pred hhHHhhcccCCccccccceeecccCchh-------------------------------h----hcceEEEEeecccccc
Q psy1604 446 IQHVMQHSTMPDVANRQTLMFSATFPET-------------------------------I----QKNYIFIAVGIIGGAS 490 (693)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~-------------------------------l----~~~~~~~~~~~~~~~~ 490 (693)
..+......++..........+... + ...+++... . ..
T Consensus 385 ---R~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~--e--p~ 457 (1033)
T PLN03142 385 ---RLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGA--E--PG 457 (1033)
T ss_pred ---hhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcc--c--cc
Confidence 0000000001111000000000000 0 000000000 0 00
Q ss_pred cceeEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcC-
Q psy1604 491 TDVVQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTK- 567 (693)
Q Consensus 491 ~~~~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g- 567 (693)
......-..+....|+..|..++.. ..+.++|||+......+.|.++|...++.+..+||+++..+|..+++.|+..
T Consensus 458 ~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~ 537 (1033)
T PLN03142 458 PPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPG 537 (1033)
T ss_pred CcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhcccc
Confidence 0000000011234566666666654 4577999999999999999999999999999999999999999999999753
Q ss_pred --CCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEe
Q psy1604 568 --KMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFY 622 (693)
Q Consensus 568 --~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~ 622 (693)
...+|++|.+++.|||+..+++||+||++||+..+.|++||+.|.||+..+.+|.
T Consensus 538 s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 538 SEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred CCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 3457899999999999999999999999999999999999999999987766553
No 87
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.3e-26 Score=258.57 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=130.0
Q ss_pred ccCCCCHHHHHHHH-----hCCCCCC---CHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCC
Q psy1604 201 ESAGLREILVKNLK-----KSNYTKP---TPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYC 272 (693)
Q Consensus 201 ~~~~l~~~l~~~l~-----~~g~~~p---~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~ 272 (693)
+.+.+.+.+.+.+. ..||..| +|+|.++++.++.+++++++++||+|||++|++|++..++...
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-------- 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-------- 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC--------
Confidence 34567788887776 5799988 9999999999999999999999999999999999998876421
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcCCcCCC----
Q psy1604 273 AQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRGRISLA---- 347 (693)
Q Consensus 273 ~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~~~l~---- 347 (693)
.++||+||++||.|.++++..+....++++.+++||.+...+...+ .++|+|+||++| .++++.+.+.++
T Consensus 137 ---~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~ 211 (970)
T PRK12899 137 ---PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQ 211 (970)
T ss_pred ---CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHh
Confidence 3799999999999999999999988899999999999988776554 599999999999 999988766555
Q ss_pred ---ceeEEEEccchhhhh
Q psy1604 348 ---SVRFVVLDEADRMLD 362 (693)
Q Consensus 348 ---~~~~lVlDEah~l~~ 362 (693)
.+.++||||||+|+-
T Consensus 212 vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 212 VGRGFYFAIIDEVDSILI 229 (970)
T ss_pred hcccccEEEEechhhhhh
Confidence 458999999999873
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=1.1e-26 Score=265.58 Aligned_cols=333 Identities=19% Similarity=0.195 Sum_probs=199.0
Q ss_pred CCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 218 YTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 218 ~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
..+|+|+|+.+.........+++.||||+|||.++++.+.. +.... ...+++|..||+++++|+++.+.++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~~--------~~~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQG--------LADSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHhC--------CCCeEEEECcHHHHHHHHHHHHHHH
Confidence 45899999988654445567899999999999997766554 43332 2347999999999999999998764
Q ss_pred hcC--CCeeEEEEeCCCChH------------------------HHHHHHhc---CCcEEEechhhHHHHH-hcCCcCCC
Q psy1604 298 AYS--SVLKICLHYGGASSM------------------------HFNRQLEK---GCNILVATMGRLKDIL-DRGRISLA 347 (693)
Q Consensus 298 ~~~--~~l~~~~~~gg~~~~------------------------~~~~~~~~---~~~IlV~Tp~~L~~~l-~~~~~~l~ 347 (693)
... ....+...+|..... .+.....+ -.+|+|+|...++... ..+...+.
T Consensus 355 ~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR 434 (878)
T PRK09694 355 ASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIR 434 (878)
T ss_pred HHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHH
Confidence 321 123555666544211 01110011 2689999998887433 32222222
Q ss_pred ce----eEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccc
Q psy1604 348 SV----RFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISL 423 (693)
Q Consensus 348 ~~----~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 423 (693)
.+ ++|||||+|.+ +......+..++.... .....+|+||||+|...+.......... ....
T Consensus 435 ~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~---~~g~~vIllSATLP~~~r~~L~~a~~~~----------~~~~- 499 (878)
T PRK09694 435 GFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQA---QAGGSVILLSATLPATLKQKLLDTYGGH----------DPVE- 499 (878)
T ss_pred HHhhccCeEEEechhhC-CHHHHHHHHHHHHHHH---hcCCcEEEEeCCCCHHHHHHHHHHhccc----------cccc-
Confidence 22 58999999987 3333344455554321 1255799999999987654321110000 0000
Q ss_pred cceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeeccc-ccccceeEEEEEccc
Q psy1604 424 ASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIG-GASTDVVQTILEVPK 502 (693)
Q Consensus 424 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 502 (693)
....|-.+... .......+........ .....+.-.......
T Consensus 500 ~~~~YPlvt~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~ 542 (878)
T PRK09694 500 LSSAYPLITWR-------------------------------------GVNGAQRFDLSAHPEQLPARFTIQLEPICLAD 542 (878)
T ss_pred ccccccccccc-------------------------------------ccccceeeeccccccccCcceEEEEEeecccc
Confidence 00000000000 0000000000000000 000000000000011
Q ss_pred -hhHHHHHHHHHhc-cCCCcEEEEecChHhHHHHHHHHhhCC---CceEEecCCCCHHHH----HHHHHHH-hcCC---C
Q psy1604 503 -QQKKKKLLELLRE-KDEDGVIVFVSTIRNADFIACYLCETE---IATTSIHGSRLQSQR----EQAIHDF-KTKK---M 569 (693)
Q Consensus 503 -~~k~~~L~~~l~~-~~~~kvLVF~~s~~~a~~l~~~L~~~~---~~v~~lhg~~~~~~R----~~~~~~F-~~g~---~ 569 (693)
......+..+++. ..++++|||||+++.++.+++.|++.. ..+..+||.++..+| +++++.| ++|+ .
T Consensus 543 ~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~ 622 (878)
T PRK09694 543 MLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQG 622 (878)
T ss_pred ccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCC
Confidence 1111222222222 356789999999999999999998764 679999999999999 4677888 6666 4
Q ss_pred cEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCC
Q psy1604 570 KVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGN 614 (693)
Q Consensus 570 ~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~ 614 (693)
.|||||+++++|||| +++++|....| .+.|+||+||++|.++
T Consensus 623 ~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 623 RILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 799999999999999 68999998778 7899999999999876
No 89
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=2.9e-27 Score=232.21 Aligned_cols=195 Identities=49% Similarity=0.764 Sum_probs=172.1
Q ss_pred cccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEE
Q psy1604 200 FESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVII 279 (693)
Q Consensus 200 f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLi 279 (693)
|.++++++.+.+.+.+.|+..|+++|.++++.+.+++++++++|||+|||++|++|+++.+..... ..++++||
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~vii 74 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALI 74 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEE
Confidence 567889999999999999999999999999999999999999999999999999999999877631 23568999
Q ss_pred EcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchh
Q psy1604 280 CAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 359 (693)
Q Consensus 280 l~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~ 359 (693)
++|+++|+.|+...+.++....++++..++|+.........+..+++|+|+||+.|.+++.+....+.+++++|+||+|.
T Consensus 75 i~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 75 LAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR 154 (203)
T ss_pred EcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH
Confidence 99999999999999999987778889999999887777777777899999999999999988888889999999999999
Q ss_pred hhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 360 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 360 l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
+.+.++...+..++.... ...|++++|||+++....+...+
T Consensus 155 ~~~~~~~~~~~~~~~~l~----~~~~~~~~SAT~~~~~~~~~~~~ 195 (203)
T cd00268 155 MLDMGFEDQIREILKLLP----KDRQTLLFSATMPKEVRDLARKF 195 (203)
T ss_pred hhccChHHHHHHHHHhCC----cccEEEEEeccCCHHHHHHHHHH
Confidence 998888888888877643 37899999999998776655444
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=8.6e-27 Score=260.76 Aligned_cols=390 Identities=18% Similarity=0.197 Sum_probs=248.9
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.|+++|.-+.-.+..|+ ++.++||+|||+++.+|++-..+.. ..+-|++||..||.|.++++..+..
T Consensus 81 ~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G-----------~~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 81 RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTG-----------KGVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcC-----------CCEEEEecCHHHHHHHHHHHHHHHh
Confidence 78999998887776664 9999999999999999996433322 2477999999999999999999999
Q ss_pred CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcCC------cCCCceeEEEEccchhhhhC-C-------
Q psy1604 300 SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRGR------ISLASVRFVVLDEADRMLDM-G------- 364 (693)
Q Consensus 300 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~l~~~-~------- 364 (693)
..++++.++.|+.+...+...+ .++|+|+||++| .++|+... ..+..+.++||||||+|+=. .
T Consensus 148 ~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiS 225 (830)
T PRK12904 148 FLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIIS 225 (830)
T ss_pred hcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeE
Confidence 9999999999998877666554 489999999999 89987654 23677999999999998621 1
Q ss_pred --------chHHHHHHhccCCCC----CCCCcceEEeeccCchhHHhhhh-hhhhh-----chhhhHHHHhhccccccce
Q psy1604 365 --------FLGDIQHVMQHSTMP----DVANRQTLMFSATFPETIQKKGC-NILVA-----TMGRLKDILDRGRISLASV 426 (693)
Q Consensus 365 --------~~~~i~~i~~~~~~~----~~~~~q~lllSAT~~~~~~~~~~-~~~~~-----~~~~l~~~l~~~~~~~~~~ 426 (693)
.+..+..+...+... -....+.+.+|..=-..+..+.. ..+.. ....+...+....+...+.
T Consensus 226 g~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~ 305 (830)
T PRK12904 226 GPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDV 305 (830)
T ss_pred CCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 222223333322110 01122334343321111111100 00000 0011222222233334444
Q ss_pred eEEEechhhhhh---------hcCcccchhHHhhcccCCccccccceeecccCch--------------------hhhcc
Q psy1604 427 RFVVLDEADRML---------DMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPE--------------------TIQKN 477 (693)
Q Consensus 427 ~~~~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~--------------------~l~~~ 477 (693)
.|++.+..-... ...|..-+...+....--.........-+.|+.. .+.+-
T Consensus 306 dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 385 (830)
T PRK12904 306 DYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREI 385 (830)
T ss_pred cEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHH
Confidence 454433211111 1112211111111111111111111111111111 11111
Q ss_pred eEEEEeeccccccccee---EEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCC
Q psy1604 478 YIFIAVGIIGGASTDVV---QTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSR 552 (693)
Q Consensus 478 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~ 552 (693)
|- ..+.......+... ..........|...+.+.+.. ..+.++||||+++..++.++..|.+.++++..+|+.
T Consensus 386 Y~-l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak- 463 (830)
T PRK12904 386 YN-LDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK- 463 (830)
T ss_pred hC-CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc-
Confidence 11 01111111111111 112334556788999988866 677899999999999999999999999999999996
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCC--------------------------------------CEEEEcC
Q psy1604 553 LQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGI--------------------------------------RHVINYD 594 (693)
Q Consensus 553 ~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v--------------------------------------~~VI~~d 594 (693)
+.+|+..+..|+.+...|+|||++++||+||+-- =|||...
T Consensus 464 -q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTe 542 (830)
T PRK12904 464 -NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542 (830)
T ss_pred -hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecc
Confidence 8899999999999999999999999999999632 2788888
Q ss_pred CCCChhhhhhhhcccccCCCcceEEEEeCCCCc
Q psy1604 595 LPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQD 627 (693)
Q Consensus 595 ~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d 627 (693)
.+.|..--.|-.||+||.|.+|.+..|+..+++
T Consensus 543 rhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred cCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 999999999999999999999999999987654
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.3e-26 Score=254.52 Aligned_cols=290 Identities=16% Similarity=0.153 Sum_probs=187.5
Q ss_pred EEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHH
Q psy1604 239 MGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFN 318 (693)
Q Consensus 239 lv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 318 (693)
|+.++||||||.+|+..+.+.+ .. +.++||++|+++|+.|+++.+++.. +..+..++++.+..+..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~~----------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~ 66 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-AL----------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKL 66 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-Hc----------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHH
Confidence 5789999999999876654443 32 2369999999999999999998754 24567778777654432
Q ss_pred H----HHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCC---ch---HHHHHHhccCCCCCCCCcceEE
Q psy1604 319 R----QLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG---FL---GDIQHVMQHSTMPDVANRQTLM 388 (693)
Q Consensus 319 ~----~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~---~~---~~i~~i~~~~~~~~~~~~q~ll 388 (693)
+ ......+|+|+|+..+. ..+.++++|||||+|.....+ .. .++...... ..+.++++
T Consensus 67 ~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-----~~~~~vil 134 (505)
T TIGR00595 67 QAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-----KFNCPVVL 134 (505)
T ss_pred HHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-----hcCCCEEE
Confidence 2 23346899999998773 357899999999999765322 11 111122211 13778999
Q ss_pred eeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecc
Q psy1604 389 FSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSA 468 (693)
Q Consensus 389 lSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (693)
+|||++.+....+..- .+..+.+.+. .. . .
T Consensus 135 ~SATPsles~~~~~~g--------------------~~~~~~l~~r--~~---------------------~-------~ 164 (505)
T TIGR00595 135 GSATPSLESYHNAKQK--------------------AYRLLVLTRR--VS---------------------G-------R 164 (505)
T ss_pred EeCCCCHHHHHHHhcC--------------------CeEEeechhh--hc---------------------C-------C
Confidence 9999765443322110 0000000000 00 0 0
Q ss_pred cCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHh----------------
Q psy1604 469 TFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRN---------------- 530 (693)
Q Consensus 469 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~---------------- 530 (693)
. + .....+..... . ....-...|++.+++ ..++++|||+|++-.
T Consensus 165 ~----~-p~v~vid~~~~----------~---~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~ 226 (505)
T TIGR00595 165 K----P-PEVKLIDMRKE----------P---RQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCP 226 (505)
T ss_pred C----C-CeEEEEecccc----------c---ccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCC
Confidence 0 0 00000000000 0 000011234444433 345689999776543
Q ss_pred --------------------------------------------HHHHHHHHhhC--CCceEEecCCCCHHHH--HHHHH
Q psy1604 531 --------------------------------------------ADFIACYLCET--EIATTSIHGSRLQSQR--EQAIH 562 (693)
Q Consensus 531 --------------------------------------------a~~l~~~L~~~--~~~v~~lhg~~~~~~R--~~~~~ 562 (693)
.+.+.+.|.+. +.++..+|+++++..+ +++++
T Consensus 227 ~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~ 306 (505)
T TIGR00595 227 NCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLN 306 (505)
T ss_pred CCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHH
Confidence 46777777765 6789999999887666 89999
Q ss_pred HHhcCCCcEEEEeCcccccCCCCCCCEEE--EcCCCC----------ChhhhhhhhcccccCCCcceEEEEe
Q psy1604 563 DFKTKKMKVLVATAVASRGLDIKGIRHVI--NYDLPQ----------EIDEYVHRIGRTGRVGNKGRATSFY 622 (693)
Q Consensus 563 ~F~~g~~~ILVaT~v~~~GiDip~v~~VI--~~d~p~----------s~~~y~Qr~GRagR~G~~G~~~~~~ 622 (693)
.|++|+.+|||+|+++++|+|+|++++|+ ++|... ....|.|++||+||.++.|.+++..
T Consensus 307 ~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 307 QFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred HHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 99999999999999999999999999986 555321 3567899999999999999998644
No 92
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=3.7e-26 Score=268.80 Aligned_cols=354 Identities=16% Similarity=0.191 Sum_probs=203.2
Q ss_pred CCCCHHHHhhhhhhhc-----CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGLE-----GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~-----g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
..|++||.+|+..+.. .++.+++++||||||++ ++.++.++++.. ...++|||+|+++|+.|+.+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~t-ai~li~~L~~~~--------~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRT-AIALMYRLLKAK--------RFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHH-HHHHHHHHHhcC--------ccCeEEEEecHHHHHHHHHHH
Confidence 3589999999987762 36899999999999998 445556665542 234899999999999999999
Q ss_pred HHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC-----CcCCCceeEEEEccchhhhhC-----
Q psy1604 294 ACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG-----RISLASVRFVVLDEADRMLDM----- 363 (693)
Q Consensus 294 ~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-----~~~l~~~~~lVlDEah~l~~~----- 363 (693)
|..+..........+++.... ..........|+|+|++.|...+... ...+..+++||+||||+-...
T Consensus 483 F~~~~~~~~~~~~~i~~i~~L--~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~ 560 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDIKGL--EDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMS 560 (1123)
T ss_pred HHhcccccccchhhhhchhhh--hhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccc
Confidence 988743222111112211100 01112345799999999998765321 245678999999999985310
Q ss_pred ----------CchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEech
Q psy1604 364 ----------GFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 433 (693)
Q Consensus 364 ----------~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~ 433 (693)
.+...+..++... +...|+|||||......+.... .....+.+.+....+....+.+.....
T Consensus 561 ~~~~~~~~~~~~~~~yr~iL~yF------dA~~IGLTATP~r~t~~~FG~p--v~~Ysl~eAI~DG~Lv~~~~p~~i~t~ 632 (1123)
T PRK11448 561 EGELQFRDQLDYVSKYRRVLDYF------DAVKIGLTATPALHTTEIFGEP--VYTYSYREAVIDGYLIDHEPPIRIETR 632 (1123)
T ss_pred cchhccchhhhHHHHHHHHHhhc------CccEEEEecCCccchhHHhCCe--eEEeeHHHHHhcCCcccCcCCEEEEEE
Confidence 1134556666532 3567999999853222211110 111122233322222111000000000
Q ss_pred hhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccc--hhHHHHHHH
Q psy1604 434 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPK--QQKKKKLLE 511 (693)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~L~~ 511 (693)
.. ..+..-.... ................+++.+. | ....+...+. ... ..-...+.+
T Consensus 633 ~~---~~gi~~~~~e-----~~~~~~~~~~~i~~~~l~d~~~--~----------~~~~~~~~vi-~~~~~~~i~~~l~~ 691 (1123)
T PRK11448 633 LS---QEGIHFEKGE-----EVEVINTQTGEIDLATLEDEVD--F----------EVEDFNRRVI-TESFNRVVCEELAK 691 (1123)
T ss_pred ec---cccccccccc-----hhhhcchhhhhhhhccCcHHHh--h----------hHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 00 0000000000 0000000000000000000000 0 0000000000 000 011123334
Q ss_pred HHhccCCCcEEEEecChHhHHHHHHHHhhC------CC---ceEEecCCCCHHHHHHHHHHHhcCCC-cEEEEeCccccc
Q psy1604 512 LLREKDEDGVIVFVSTIRNADFIACYLCET------EI---ATTSIHGSRLQSQREQAIHDFKTKKM-KVLVATAVASRG 581 (693)
Q Consensus 512 ~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~------~~---~v~~lhg~~~~~~R~~~~~~F~~g~~-~ILVaT~v~~~G 581 (693)
.+.....+|+||||.++++|+.+++.|.+. ++ .+..+||+.+ ++.+++++|+++.. +|+|+++++.+|
T Consensus 692 ~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG 769 (1123)
T PRK11448 692 YLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTG 769 (1123)
T ss_pred HHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccC
Confidence 444344589999999999999999887653 12 4567888865 56789999999887 689999999999
Q ss_pred CCCCCCCEEEEcCCCCChhhhhhhhcccccCCC
Q psy1604 582 LDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGN 614 (693)
Q Consensus 582 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~ 614 (693)
+|+|.+.+||++.++.|...|+||+||+.|.-.
T Consensus 770 ~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 770 IDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred CCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 999999999999999999999999999999743
No 93
>KOG0951|consensus
Probab=99.95 E-value=3.7e-26 Score=253.69 Aligned_cols=343 Identities=19% Similarity=0.209 Sum_probs=233.7
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhhhhhhhcC-CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCC
Q psy1604 205 LREILVKNLKKSNYTKPTPIQKYAIPAGLEG-RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPT 283 (693)
Q Consensus 205 l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g-~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Pt 283 (693)
++..-..++. |..++.++|.....+.+.+ .++++|||||+|||..+++.+|+.+........+-.....++++++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 4444444333 7778999999999998865 699999999999999999999999876544322222344589999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC--cCCCceeEEEEccchhhh
Q psy1604 284 RELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR--ISLASVRFVVLDEADRML 361 (693)
Q Consensus 284 r~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~--~~l~~~~~lVlDEah~l~ 361 (693)
++|++.|...+.+.....++++...+|+....... ....+|+|+||+...-.-+++. -..+-++++|+||.|.+.
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 99999999999999999999999999987644322 2357899999999855444322 123457899999999775
Q ss_pred hCCchHHHHHHhccC---CCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhh
Q psy1604 362 DMGFLGDIQHVMQHS---TMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRML 438 (693)
Q Consensus 362 ~~~~~~~i~~i~~~~---~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~ 438 (693)
| ..++.++.|..+. ........+++++|||+|+-.. .+. |+...+ ..+.+.+..
T Consensus 451 D-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D-V~~-Fl~v~~---------~glf~fd~s----------- 507 (1674)
T KOG0951|consen 451 D-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED-VAS-FLRVDP---------EGLFYFDSS----------- 507 (1674)
T ss_pred c-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh-hHH-HhccCc---------ccccccCcc-----------
Confidence 3 3455554443321 1122346789999999997422 111 100000 000000000
Q ss_pred hcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHH------HHHHHH
Q psy1604 439 DMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKK------KKLLEL 512 (693)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~------~~L~~~ 512 (693)
--|-.+.+.|+-+.. .+..|. ...-++
T Consensus 508 ------------------------------yRpvPL~qq~Igi~e-----------------k~~~~~~qamNe~~yeKV 540 (1674)
T KOG0951|consen 508 ------------------------------YRPVPLKQQYIGITE-----------------KKPLKRFQAMNEACYEKV 540 (1674)
T ss_pred ------------------------------cCcCCccceEecccc-----------------CCchHHHHHHHHHHHHHH
Confidence 000112222222211 111111 122345
Q ss_pred HhccCCCcEEEEecChHhHHHHHHHHhhC-------------------------------------CCceEEecCCCCHH
Q psy1604 513 LREKDEDGVIVFVSTIRNADFIACYLCET-------------------------------------EIATTSIHGSRLQS 555 (693)
Q Consensus 513 l~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------------------------------------~~~v~~lhg~~~~~ 555 (693)
++....+++|||+.++++....++.++.. .+.+..+|++|+..
T Consensus 541 m~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~ 620 (1674)
T KOG0951|consen 541 LEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRK 620 (1674)
T ss_pred HHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcc
Confidence 55567799999999998887777665421 34578899999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEE----EcCC------CCChhhhhhhhcccccCCCc--ceEEEEe
Q psy1604 556 QREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVI----NYDL------PQEIDEYVHRIGRTGRVGNK--GRATSFY 622 (693)
Q Consensus 556 ~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI----~~d~------p~s~~~y~Qr~GRagR~G~~--G~~~~~~ 622 (693)
+|..+.+.|+.|.+++||+|..+++|+|+|.-+++| .||+ +.++.+..||.|||||.+-+ |..++.-
T Consensus 621 dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit 699 (1674)
T KOG0951|consen 621 DRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIIT 699 (1674)
T ss_pred hHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeecc
Confidence 999999999999999999999999999999877666 3554 45899999999999998754 4444443
No 94
>KOG0947|consensus
Probab=99.95 E-value=5.5e-26 Score=246.83 Aligned_cols=359 Identities=23% Similarity=0.228 Sum_probs=231.9
Q ss_pred CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 216 SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 216 ~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
+.| .|-.+|++||-.+.+|..++|+|+|.+|||+++..++.-.- ....|+++.+|-++|-+|-++.|+
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq-----------~h~TR~iYTSPIKALSNQKfRDFk 361 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ-----------KHMTRTIYTSPIKALSNQKFRDFK 361 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH-----------hhccceEecchhhhhccchHHHHH
Confidence 344 68899999999999999999999999999998776654221 334589999999999999999998
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhcc
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQH 375 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~ 375 (693)
.-....+ .++|+.. +...+..+|+|.+.|..+|-++.--++++.+|||||+|.+.|...+..++.++..
T Consensus 362 ~tF~Dvg----LlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIM 430 (1248)
T KOG0947|consen 362 ETFGDVG----LLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIM 430 (1248)
T ss_pred Hhccccc----eeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeee
Confidence 7654433 5667653 4556899999999999999887767889999999999999988877777777754
Q ss_pred CCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhcccc----------ccceeEE---------Eechhhh
Q psy1604 376 STMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRIS----------LASVRFV---------VLDEADR 436 (693)
Q Consensus 376 ~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----------~~~~~~~---------~~d~~~~ 436 (693)
+ | ...++|++|||.|+.... + .|+.+.+-. .-.+++. ++++...
T Consensus 431 l--P--~HV~~IlLSATVPN~~EF-A------------~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~ 493 (1248)
T KOG0947|consen 431 L--P--RHVNFILLSATVPNTLEF-A------------DWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGI 493 (1248)
T ss_pred c--c--ccceEEEEeccCCChHHH-H------------HHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccch
Confidence 3 3 478999999999875432 2 222211100 0001111 1122111
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK 516 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 516 (693)
.+..++........+................-+....-+..+-. .+.....+.+.- .+......++..|+..
T Consensus 494 fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~-----g~~r~~~~~~nr---r~~~~~l~lin~L~k~ 565 (1248)
T KOG0947|consen 494 FLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHN-----GGSRGSGIGKNR---RKQPTWLDLINHLRKK 565 (1248)
T ss_pred hhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCC-----CCcccccccccc---cccchHHHHHHHHhhc
Confidence 12111111100000000000000000000000000000000000 000000000000 0012244566677777
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCC---------------------------------------CceEEecCCCCHHHH
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETE---------------------------------------IATTSIHGSRLQSQR 557 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~---------------------------------------~~v~~lhg~~~~~~R 557 (693)
.--+++|||-+++.|+..+++|...+ ..++++||++-+--+
T Consensus 566 ~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivK 645 (1248)
T KOG0947|consen 566 NLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVK 645 (1248)
T ss_pred ccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHH
Confidence 77899999999999999999986532 127889999999999
Q ss_pred HHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCC---------CChhhhhhhhcccccCCC--cceEEEEeC
Q psy1604 558 EQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLP---------QEIDEYVHRIGRTGRVGN--KGRATSFYD 623 (693)
Q Consensus 558 ~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p---------~s~~~y~Qr~GRagR~G~--~G~~~~~~~ 623 (693)
+-+.-.|..|-++||+||.++++|+|.|.-.+|+ -.+. -.+-+|.|++|||||.|- .|.++++..
T Consensus 646 E~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 646 EVVELLFQRGLVKVLFATETFAMGVNMPARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred HHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 9999999999999999999999999999655555 3332 368899999999999984 577777765
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=8.4e-26 Score=251.85 Aligned_cols=391 Identities=17% Similarity=0.204 Sum_probs=240.6
Q ss_pred CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 219 TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
..|++.|.-+.-.+..|+ ++.+.||+|||+++.+|++-..+.. ..+-|++||.-||.|-++.+..+.
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G-----------~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTG-----------KGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcC-----------CCeEEEeccHHHHHhhHHHHHHHH
Confidence 379999998887776765 9999999999999999988777543 368999999999999999999999
Q ss_pred cCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcCC------cCCCceeEEEEccchhhhh-CC------
Q psy1604 299 YSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRGR------ISLASVRFVVLDEADRMLD-MG------ 364 (693)
Q Consensus 299 ~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~l~~-~~------ 364 (693)
...++++.++.++.+....+.. ..+||+++|...| .++|+... .....+.+.||||+|.++= ..
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLii 223 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLII 223 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceec
Confidence 9999999999887766554333 3689999999887 45554432 1234688999999998762 11
Q ss_pred ---------chHHHHHHhccCCCC---------------CCCCcceEEeeccCchhHHhhh-hhhhhh-ch----hhhHH
Q psy1604 365 ---------FLGDIQHVMQHSTMP---------------DVANRQTLMFSATFPETIQKKG-CNILVA-TM----GRLKD 414 (693)
Q Consensus 365 ---------~~~~i~~i~~~~~~~---------------~~~~~q~lllSAT~~~~~~~~~-~~~~~~-~~----~~l~~ 414 (693)
.+..+..+...+... -....+.+.++..=-..+.... ...+.. .. ..+..
T Consensus 224 sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~ 303 (796)
T PRK12906 224 SGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQ 303 (796)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHH
Confidence 111222222111000 0011122222221001111100 000000 00 11111
Q ss_pred HHhhccccccceeEEEechhhhhh---------hcCcccchhHHhhcccCCccccccceeecccCch-------------
Q psy1604 415 ILDRGRISLASVRFVVLDEADRML---------DMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPE------------- 472 (693)
Q Consensus 415 ~l~~~~~~~~~~~~~~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~------------- 472 (693)
.+....+...+..|++.+..-... ...|..-+...+....--..........+.|...
T Consensus 304 Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTG 383 (796)
T PRK12906 304 ALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTG 383 (796)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCC
Confidence 122222223344444433211111 1111111111111111111111111111111111
Q ss_pred -------hhhcceEEEEeeccccccccee---EEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhh
Q psy1604 473 -------TIQKNYIFIAVGIIGGASTDVV---QTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCE 540 (693)
Q Consensus 473 -------~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~ 540 (693)
.+.+-|-. .+-......+... ..........|...+.+.+.. ..+.++||||+++..++.++..|.+
T Consensus 384 Ta~~e~~Ef~~iY~l-~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~ 462 (796)
T PRK12906 384 TAKTEEEEFREIYNM-EVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDE 462 (796)
T ss_pred CCHHHHHHHHHHhCC-CEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 11111110 0111111111111 112333456788888888855 4788999999999999999999999
Q ss_pred CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCC---CCC-----EEEEcCCCCChhhhhhhhcccccC
Q psy1604 541 TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIK---GIR-----HVINYDLPQEIDEYVHRIGRTGRV 612 (693)
Q Consensus 541 ~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip---~v~-----~VI~~d~p~s~~~y~Qr~GRagR~ 612 (693)
.+++...+|+++.+.++..+.+.+++|. |+|||++++||+||+ +|. |||++++|.|...|.|++|||||.
T Consensus 463 ~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRq 540 (796)
T PRK12906 463 AGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQ 540 (796)
T ss_pred CCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccC
Confidence 9999999999999888888888888876 999999999999994 888 999999999999999999999999
Q ss_pred CCcceEEEEeCCCCc
Q psy1604 613 GNKGRATSFYDPDQD 627 (693)
Q Consensus 613 G~~G~~~~~~~~~~d 627 (693)
|.+|.+..|++.+++
T Consensus 541 G~~G~s~~~~sleD~ 555 (796)
T PRK12906 541 GDPGSSRFYLSLEDD 555 (796)
T ss_pred CCCcceEEEEeccch
Confidence 999999999986643
No 96
>KOG0948|consensus
Probab=99.94 E-value=3e-26 Score=243.08 Aligned_cols=359 Identities=23% Similarity=0.246 Sum_probs=238.2
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.+-|+|+.+|..+-++..+++.|.|.+|||.++..+|...|.. +.||++.+|-++|.+|-++++..-..
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----------kQRVIYTSPIKALSNQKYREl~~EF~ 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----------KQRVIYTSPIKALSNQKYRELLEEFK 197 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----------cCeEEeeChhhhhcchhHHHHHHHhc
Confidence 6889999999999999999999999999999988888877744 34899999999999999999877554
Q ss_pred CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCC
Q psy1604 300 SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMP 379 (693)
Q Consensus 300 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~ 379 (693)
. +.+.+|+... ...+.-+|.|.+.|...|-++.--+..+.+||+||+|.|-|...+-.++..+.. +|
T Consensus 198 D----VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIl--lP 264 (1041)
T KOG0948|consen 198 D----VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIIL--LP 264 (1041)
T ss_pred c----cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEe--cc
Confidence 3 4445665542 345789999999999999887767889999999999999887765555554433 33
Q ss_pred CCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHH----hhcccc------ccceeEEEechhhhhhhcCcccchhHH
Q psy1604 380 DVANRQTLMFSATFPETIQKKGCNILVATMGRLKDIL----DRGRIS------LASVRFVVLDEADRMLDMGFLGDIQHV 449 (693)
Q Consensus 380 ~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~~ 449 (693)
++.+.+++|||+|+..+. +.++....-.. +... .-..+. ..+--+++.|+...+....+......+
T Consensus 265 --~~vr~VFLSATiPNA~qF-AeWI~~ihkQP-cHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l 340 (1041)
T KOG0948|consen 265 --DNVRFVFLSATIPNARQF-AEWICHIHKQP-CHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVL 340 (1041)
T ss_pred --ccceEEEEeccCCCHHHH-HHHHHHHhcCC-ceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHh
Confidence 478999999999986543 22221000000 0000 000000 011113333332222211111111111
Q ss_pred hhcccCCccccccceeecccCchhhhcceEEEEe-ecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecCh
Q psy1604 450 MQHSTMPDVANRQTLMFSATFPETIQKNYIFIAV-GIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTI 528 (693)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~ 528 (693)
....... .+....- +..+... -..+....+-.+...+-.....++|||+-++
T Consensus 341 ~~~~~~~--------------------~~~~~~~k~~kG~~~-------~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSk 393 (1041)
T KOG0948|consen 341 RKAGESD--------------------GKKKANKKGRKGGTG-------GKGPGDSDIYKIVKMIMERNYLPVIVFSFSK 393 (1041)
T ss_pred hccCCCc--------------------cccccccccccCCcC-------CCCCCcccHHHHHHHHHhhcCCceEEEEecH
Confidence 1000000 0000000 0000000 0011222344555555567788999999999
Q ss_pred HhHHHHHHHHhhCCC---------------------------------------ceEEecCCCCHHHHHHHHHHHhcCCC
Q psy1604 529 RNADFIACYLCETEI---------------------------------------ATTSIHGSRLQSQREQAIHDFKTKKM 569 (693)
Q Consensus 529 ~~a~~l~~~L~~~~~---------------------------------------~v~~lhg~~~~~~R~~~~~~F~~g~~ 569 (693)
++|+.++-.+.+..+ .+..+|+++-+--++-+.-.|+.|-+
T Consensus 394 keCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLv 473 (1041)
T KOG0948|consen 394 KECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLV 473 (1041)
T ss_pred hHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHH
Confidence 999999988765422 26789999999999999999999999
Q ss_pred cEEEEeCcccccCCCCCCCEEEE----cCC---C-CChhhhhhhhcccccCCC--cceEEEEeCCCCchHHHHH
Q psy1604 570 KVLVATAVASRGLDIKGIRHVIN----YDL---P-QEIDEYVHRIGRTGRVGN--KGRATSFYDPDQDGAIAKD 633 (693)
Q Consensus 570 ~ILVaT~v~~~GiDip~v~~VI~----~d~---p-~s~~~y~Qr~GRagR~G~--~G~~~~~~~~~~d~~~~~~ 633 (693)
++|+||.+++.|||.|.-++|+- ||- . -|--+|+|+.|||||.|. .|.|+++++..-+...++.
T Consensus 474 KvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~ 547 (1041)
T KOG0948|consen 474 KVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKD 547 (1041)
T ss_pred HHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHH
Confidence 99999999999999997666653 321 1 267789999999999985 6899999987665554443
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=3.3e-25 Score=247.22 Aligned_cols=390 Identities=15% Similarity=0.184 Sum_probs=242.4
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.|+++|.-.--.+.+| -|+.++||.|||++|.+|++...+.. ..|.||+|++.||.|..+++..+..
T Consensus 82 ~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g-----------~~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 82 RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTG-----------KGVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 7888898766666555 48999999999999999999777543 2499999999999999999999999
Q ss_pred CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcC-CcCC-----CceeEEEEccchhhhhCC--------
Q psy1604 300 SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRG-RISL-----ASVRFVVLDEADRMLDMG-------- 364 (693)
Q Consensus 300 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~-~~~l-----~~~~~lVlDEah~l~~~~-------- 364 (693)
..++++.++.++.+.... .....+||+++||+.| .++|+.+ .+.. ..+.++||||||.++-..
T Consensus 149 ~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIIS 226 (908)
T PRK13107 149 FLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIIS 226 (908)
T ss_pred hcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeec
Confidence 999999999998876432 2234789999999999 8888776 3333 678999999999887321
Q ss_pred --------chHHHHHHhccCC---------------CCCCCCcceEEeeccCchhHHhhh---------hhhh----hhc
Q psy1604 365 --------FLGDIQHVMQHST---------------MPDVANRQTLMFSATFPETIQKKG---------CNIL----VAT 408 (693)
Q Consensus 365 --------~~~~i~~i~~~~~---------------~~~~~~~q~lllSAT~~~~~~~~~---------~~~~----~~~ 408 (693)
.+..+..+...+. +.-....+.+.||-.=-..+..+. ..+. ...
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~ 306 (908)
T PRK13107 227 GAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISL 306 (908)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHH
Confidence 1111221111110 000011222333211001111110 0000 000
Q ss_pred hhhhHHHHhhccccccceeEEEechhhhhhh---------cCcccchhHHhhcccCCccccccceeecccCchh------
Q psy1604 409 MGRLKDILDRGRISLASVRFVVLDEADRMLD---------MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPET------ 473 (693)
Q Consensus 409 ~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~------ 473 (693)
...+...+....+...+..|++.+..-.+.+ ..|..-+...+....--........+-+.|+..-
T Consensus 307 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (908)
T PRK13107 307 LHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEK 386 (908)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhH
Confidence 1112222233333344455554332111111 1111111111111111111111111111111111
Q ss_pred --------------hhcceEEEEeecccccccce---eEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHH
Q psy1604 474 --------------IQKNYIFIAVGIIGGASTDV---VQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFI 534 (693)
Q Consensus 474 --------------l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l 534 (693)
+.+-|-. .+-......+.. .....+.....|...+++.+.. ..+.++||||.++..++.+
T Consensus 387 L~GMTGTa~te~~Ef~~iY~l-~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~l 465 (908)
T PRK13107 387 LAGMTGTADTEAFEFQHIYGL-DTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELL 465 (908)
T ss_pred hhcccCCChHHHHHHHHHhCC-CEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHH
Confidence 1111110 000011111111 1112334456787777777664 5688999999999999999
Q ss_pred HHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCC----------------------------
Q psy1604 535 ACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKG---------------------------- 586 (693)
Q Consensus 535 ~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~---------------------------- 586 (693)
+..|...+++...+|+.+++.+++.+.+.|++|. |+|||++++||+||.=
T Consensus 466 s~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (908)
T PRK13107 466 ARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQI 543 (908)
T ss_pred HHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998 9999999999999952
Q ss_pred ---------CCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCc
Q psy1604 587 ---------IRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQD 627 (693)
Q Consensus 587 ---------v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d 627 (693)
==|||-...+.|..--.|-.||+||.|.+|.+..|++.+++
T Consensus 544 ~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 544 RHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred hHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12788888899998899999999999999999999987654
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=1.7e-24 Score=244.96 Aligned_cols=307 Identities=21% Similarity=0.212 Sum_probs=223.3
Q ss_pred CCCHHHHhhhhhhhcC------CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLEG------RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g------~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
.-||-|..||..+.+. .|-|+|+..|-|||-+++-+++... ..+++|.|||||--||+|.++.
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV-----------~~GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV-----------MDGKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh-----------cCCCeEEEEcccHHhHHHHHHH
Confidence 5689999999998853 4889999999999999888888766 3456899999999999999999
Q ss_pred HHHHhcCCCeeEEEEeCCCChHHHHHHHh----cCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHH
Q psy1604 294 ACKYAYSSVLKICLHYGGASSMHFNRQLE----KGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDI 369 (693)
Q Consensus 294 ~~~~~~~~~l~~~~~~gg~~~~~~~~~~~----~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i 369 (693)
|+.-.....+++..+.-=.+..++...+. ...||+|+|...|. ..+.++++.+|||||-||..=. ....+
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~-----kdv~FkdLGLlIIDEEqRFGVk-~KEkL 736 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLS-----KDVKFKDLGLLIIDEEQRFGVK-HKEKL 736 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhC-----CCcEEecCCeEEEechhhcCcc-HHHHH
Confidence 99888888888887754444444443332 36899999996663 3567899999999999987422 23333
Q ss_pred HHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHH
Q psy1604 370 QHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHV 449 (693)
Q Consensus 370 ~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 449 (693)
..+. .+..++-||||+=++...++-.= +
T Consensus 737 K~Lr--------~~VDvLTLSATPIPRTL~Msm~G---------------------i----------------------- 764 (1139)
T COG1197 737 KELR--------ANVDVLTLSATPIPRTLNMSLSG---------------------I----------------------- 764 (1139)
T ss_pred HHHh--------ccCcEEEeeCCCCcchHHHHHhc---------------------c-----------------------
Confidence 3322 37789999999743322211000 0
Q ss_pred hhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChH
Q psy1604 450 MQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIR 529 (693)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~ 529 (693)
..+..-.|-|.. ...+ ...+...+..--.+.+...+ ..++++-...|..+
T Consensus 765 ------------RdlSvI~TPP~~--R~pV--------------~T~V~~~d~~~ireAI~REl--~RgGQvfYv~NrV~ 814 (1139)
T COG1197 765 ------------RDLSVIATPPED--RLPV--------------KTFVSEYDDLLIREAILREL--LRGGQVFYVHNRVE 814 (1139)
T ss_pred ------------hhhhhccCCCCC--Ccce--------------EEEEecCChHHHHHHHHHHH--hcCCEEEEEecchh
Confidence 000000000000 1111 11111112222223333222 35778888889999
Q ss_pred hHHHHHHHHhhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCC-CChhhhhhhh
Q psy1604 530 NADFIACYLCET--EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLP-QEIDEYVHRI 606 (693)
Q Consensus 530 ~a~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p-~s~~~y~Qr~ 606 (693)
..+.+++.|++. ...+.+.||.|+..+-++++.+|-+|+++|||||.+.+.|||||+++.+|..+.. ...+++.|..
T Consensus 815 ~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLR 894 (1139)
T COG1197 815 SIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLR 894 (1139)
T ss_pred hHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhc
Confidence 999999999875 4568899999999999999999999999999999999999999999999976654 3689999999
Q ss_pred cccccCCCcceEEEEeCCC
Q psy1604 607 GRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 607 GRagR~G~~G~~~~~~~~~ 625 (693)
||+||..+.+.|+.+|.+.
T Consensus 895 GRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 895 GRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred cccCCccceEEEEEeecCc
Confidence 9999999999999999753
No 99
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.8e-24 Score=244.92 Aligned_cols=360 Identities=21% Similarity=0.212 Sum_probs=233.5
Q ss_pred HhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 214 KKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 214 ~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
...+| .|-++|++++..+.++.+++++||||+|||.+...++...+.. +.++++++|.++|.+|.++.
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-----------~qrviYTsPIKALsNQKyrd 181 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-----------GQRVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-----------CCceEeccchhhhhhhHHHH
Confidence 34566 7899999999999999999999999999999987777766633 33699999999999999998
Q ss_pred HHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHh
Q psy1604 294 ACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVM 373 (693)
Q Consensus 294 ~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~ 373 (693)
+........--+.+.+|+.. +...+.++|.|.+.|.+++-++...+.++.+||+||+|.|.+...+...+.++
T Consensus 182 l~~~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I 254 (1041)
T COG4581 182 LLAKFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVI 254 (1041)
T ss_pred HHHHhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHH
Confidence 86654322222355566544 34568999999999999998887788999999999999999988888888877
Q ss_pred ccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcc
Q psy1604 374 QHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHS 453 (693)
Q Consensus 374 ~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 453 (693)
..++ ...++++||||.|+.. .+..|+.... ......+.-+....-+...+... ..
T Consensus 255 i~lP----~~v~~v~LSATv~N~~-------------EF~~Wi~~~~--~~~~~vv~t~~RpvPL~~~~~~~-~~----- 309 (1041)
T COG4581 255 ILLP----DHVRFVFLSATVPNAE-------------EFAEWIQRVH--SQPIHVVSTEHRPVPLEHFVYVG-KG----- 309 (1041)
T ss_pred HhcC----CCCcEEEEeCCCCCHH-------------HHHHHHHhcc--CCCeEEEeecCCCCCeEEEEecC-Cc-----
Confidence 6543 3679999999987643 2333443222 11111111110000000000000 00
Q ss_pred cCCccccccceeecccC----chhhhcceEEEEeecccccccceeEEEE---------EccchhHHHHHHHHHhccCCCc
Q psy1604 454 TMPDVANRQTLMFSATF----PETIQKNYIFIAVGIIGGASTDVVQTIL---------EVPKQQKKKKLLELLREKDEDG 520 (693)
Q Consensus 454 ~~~~~~~~~~~~~~~t~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~k~~~L~~~l~~~~~~k 520 (693)
.+.-...... +.++. ...+...+ .... ...+-.+... ......+...+...+......+
T Consensus 310 l~~lvde~~~--~~~~~~~~a~~~l~~~~-----~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP 381 (1041)
T COG4581 310 LFDLVDEKKK--FNAENFPSANRSLSCFS-----EKVR-ETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLP 381 (1041)
T ss_pred eeeeeccccc--chhhcchhhhhhhhccc-----hhcc-ccCccccccccccccccCCcccccccchHHHhhhhhhcCCc
Confidence 0000000000 00000 00000000 0000 0000000000 0011223345666666677788
Q ss_pred EEEEecChHhHHHHHHHHhhC----------------------------CC-------------ceEEecCCCCHHHHHH
Q psy1604 521 VIVFVSTIRNADFIACYLCET----------------------------EI-------------ATTSIHGSRLQSQREQ 559 (693)
Q Consensus 521 vLVF~~s~~~a~~l~~~L~~~----------------------------~~-------------~v~~lhg~~~~~~R~~ 559 (693)
+|+|+-+++.|+.++..|... ++ .+..+|++|-+..+..
T Consensus 382 ~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~ 461 (1041)
T COG4581 382 AIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKEL 461 (1041)
T ss_pred eEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHH
Confidence 999999999999988876421 11 1457899999999999
Q ss_pred HHHHHhcCCCcEEEEeCcccccCCCCCCCEEEE----cC----CCCChhhhhhhhcccccCCCc--ceEEEEeCCC
Q psy1604 560 AIHDFKTKKMKVLVATAVASRGLDIKGIRHVIN----YD----LPQEIDEYVHRIGRTGRVGNK--GRATSFYDPD 625 (693)
Q Consensus 560 ~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~----~d----~p~s~~~y~Qr~GRagR~G~~--G~~~~~~~~~ 625 (693)
+...|..|-++|++||.+++.|+|.|.-++|+- +| ..-++.+|.|+.|||||.|.+ |.+++.-.+.
T Consensus 462 vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 462 VEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred HHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 999999999999999999999999997665551 22 234789999999999999964 7777774433
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=4.5e-23 Score=201.82 Aligned_cols=299 Identities=21% Similarity=0.267 Sum_probs=204.4
Q ss_pred CCCHHHHhhhhhhh----cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGL----EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 220 ~p~~~Q~~ai~~il----~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
++++.|+.+-..+. +.++.++.|-||+|||-. +...++..+.++ .++.+.+|+...+..++..++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~G----------~~vciASPRvDVclEl~~Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQG----------GRVCIASPRVDVCLELYPRLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhcC----------CeEEEecCcccchHHHHHHHH
Confidence 68899998766554 568999999999999986 566666666554 378999999999999999888
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhcc
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQH 375 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~ 375 (693)
.-. .+..+.++||+...... ..++|+|...|+++- +.++++|+||+|...-.. ...+....+.
T Consensus 166 ~aF--~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~-d~~L~~Av~~ 228 (441)
T COG4098 166 QAF--SNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSD-DQSLQYAVKK 228 (441)
T ss_pred Hhh--ccCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEeccccccccC-CHHHHHHHHH
Confidence 764 34667888888764321 589999999998753 368899999999763211 1222222222
Q ss_pred CCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccC
Q psy1604 376 STMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTM 455 (693)
Q Consensus 376 ~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 455 (693)
.. ....-++.+|||+++.+......- ....+.
T Consensus 229 ar---k~~g~~IylTATp~k~l~r~~~~g--------------------~~~~~k------------------------- 260 (441)
T COG4098 229 AR---KKEGATIYLTATPTKKLERKILKG--------------------NLRILK------------------------- 260 (441)
T ss_pred hh---cccCceEEEecCChHHHHHHhhhC--------------------CeeEee-------------------------
Confidence 11 135678999999987765432110 000000
Q ss_pred CccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEc-cc-----hhHH-HHHHHHHhc--cCCCcEEEEec
Q psy1604 456 PDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEV-PK-----QQKK-KKLLELLRE--KDEDGVIVFVS 526 (693)
Q Consensus 456 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~k~-~~L~~~l~~--~~~~kvLVF~~ 526 (693)
+|......++- ...+... .. ..|+ ..|..+|+. +.+.++|||++
T Consensus 261 --------------lp~RfH~~pLp-------------vPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p 313 (441)
T COG4098 261 --------------LPARFHGKPLP-------------VPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFP 313 (441)
T ss_pred --------------cchhhcCCCCC-------------CCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEec
Confidence 00001000000 0000000 00 1122 245666665 45689999999
Q ss_pred ChHhHHHHHHHHhhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCC--CCChhhh
Q psy1604 527 TIRNADFIACYLCET--EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDL--PQEIDEY 602 (693)
Q Consensus 527 s~~~a~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~--p~s~~~y 602 (693)
+....+.++..|++. ...+...|+. ...|.+..+.||+|++++||+|.+++||+.+|+|++.|.=.- -.+.+.+
T Consensus 314 ~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaL 391 (441)
T COG4098 314 EIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESAL 391 (441)
T ss_pred chHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHH
Confidence 999999999999543 3455788887 678999999999999999999999999999999998664322 2578899
Q ss_pred hhhhcccccCCC--cceEEEEeC
Q psy1604 603 VHRIGRTGRVGN--KGRATSFYD 623 (693)
Q Consensus 603 ~Qr~GRagR~G~--~G~~~~~~~ 623 (693)
+|.+||+||.-. .|.+..|..
T Consensus 392 VQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 392 VQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred HHHhhhccCCCcCCCCcEEEEec
Confidence 999999999743 477666665
No 101
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=2.7e-24 Score=204.56 Aligned_cols=167 Identities=32% Similarity=0.511 Sum_probs=141.3
Q ss_pred CHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCC
Q psy1604 222 TPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSS 301 (693)
Q Consensus 222 ~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 301 (693)
||+|.++++.+.+++++++.+|||+|||++|++++++.+.+.. ..++|+++|+++|+.|+.+.+.++....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~---------~~~~lii~P~~~l~~q~~~~~~~~~~~~ 71 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK---------DARVLIIVPTRALAEQQFERLRKFFSNT 71 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS---------SSEEEEEESSHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC---------CceEEEEeeccccccccccccccccccc
Confidence 7999999999999999999999999999999999999887652 1279999999999999999999998887
Q ss_pred CeeEEEEeCCCChH-HHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCC
Q psy1604 302 VLKICLHYGGASSM-HFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPD 380 (693)
Q Consensus 302 ~l~~~~~~gg~~~~-~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~ 380 (693)
.+++..++++.... .....+..+++|+|+||++|.+.+......+.++++||+||+|.+.+..+...+..++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~- 150 (169)
T PF00270_consen 72 NVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF- 150 (169)
T ss_dssp TSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT-
T ss_pred ccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCC-
Confidence 88999999988755 3444445679999999999999998866677889999999999999888888888877763222
Q ss_pred CCCcceEEeeccCchhHHh
Q psy1604 381 VANRQTLMFSATFPETIQK 399 (693)
Q Consensus 381 ~~~~q~lllSAT~~~~~~~ 399 (693)
.+.+++++|||++..+++
T Consensus 151 -~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 151 -KNIQIILLSATLPSNVEK 168 (169)
T ss_dssp -TTSEEEEEESSSTHHHHH
T ss_pred -CCCcEEEEeeCCChhHhh
Confidence 267899999999866543
No 102
>KOG0385|consensus
Probab=99.92 E-value=1.9e-23 Score=223.06 Aligned_cols=372 Identities=16% Similarity=0.215 Sum_probs=231.2
Q ss_pred CCCHHHHhhhhhhh----cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGL----EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 220 ~p~~~Q~~ai~~il----~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
.+++||.+.+.++. +|-+.|++.++|.|||++ .+.+|..|..... ..+ .-||+||...| .+|.++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~------~~G-PfLVi~P~StL-~NW~~Ef~ 237 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG------IPG-PFLVIAPKSTL-DNWMNEFK 237 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC------CCC-CeEEEeeHhhH-HHHHHHHH
Confidence 68999999999886 467899999999999988 4555555544221 112 36999998777 55899999
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHH--HH-hcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHH
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNR--QL-EKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHV 372 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~--~~-~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i 372 (693)
+|. +.+++.+++|+........ .+ ....+|+|+|+++.+.. +..+.--+++|||||||||+.+.. ..+..+
T Consensus 238 rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~ 311 (971)
T KOG0385|consen 238 RFT--PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSKI 311 (971)
T ss_pred HhC--CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHHH
Confidence 997 5688888988764322111 11 23689999999999764 222333468999999999997654 344455
Q ss_pred hccCCCCCCCCcceEEeeccC-chhHHhhhhhhh------hhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccc
Q psy1604 373 MQHSTMPDVANRQTLMFSATF-PETIQKKGCNIL------VATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGD 445 (693)
Q Consensus 373 ~~~~~~~~~~~~q~lllSAT~-~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 445 (693)
+.... ....+++|+|+ .+.+..+...+- ......+..|++......... .+...+.++..-++..
T Consensus 312 lr~f~-----~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e---~v~~Lh~vL~pFlLRR 383 (971)
T KOG0385|consen 312 LREFK-----TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQE---LVSRLHKVLRPFLLRR 383 (971)
T ss_pred HHHhc-----ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHH---HHHHHHhhhhHHHHHH
Confidence 54433 45678999996 333333322211 112222333333221110000 0011111111101111
Q ss_pred hhHHhhcccCCccccccceeecccCch-------------------------------------hhhcceEEEEeecccc
Q psy1604 446 IQHVMQHSTMPDVANRQTLMFSATFPE-------------------------------------TIQKNYIFIAVGIIGG 488 (693)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~t~~~-------------------------------------~l~~~~~~~~~~~~~~ 488 (693)
.+. .....++....+.....+.+ ...+.|++-.. ..+.
T Consensus 384 ~K~----dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~-ePg~ 458 (971)
T KOG0385|consen 384 IKS----DVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA-EPGP 458 (971)
T ss_pred HHH----hHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC-CCCC
Confidence 111 11111111111111111110 01122332210 0001
Q ss_pred cccceeEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhc
Q psy1604 489 ASTDVVQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKT 566 (693)
Q Consensus 489 ~~~~~~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~ 566 (693)
........+ ....|+..|-++|.. ..+.++|||.+-....+.|.+++.-+++.++.+.|.++.++|...++.|..
T Consensus 459 pyttdehLv---~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~ 535 (971)
T KOG0385|consen 459 PYTTDEHLV---TNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNA 535 (971)
T ss_pred CCCcchHHH---hcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCC
Confidence 111111111 223444444444443 467899999999999999999999999999999999999999999999986
Q ss_pred CC---CcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEe
Q psy1604 567 KK---MKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFY 622 (693)
Q Consensus 567 g~---~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~ 622 (693)
.. .-.|++|.+.+.|||+..+++||.||..|+|..-+|...||+|.||+..+.+|-
T Consensus 536 ~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~R 594 (971)
T KOG0385|consen 536 PPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYR 594 (971)
T ss_pred CCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEE
Confidence 44 446899999999999999999999999999999999999999999988776663
No 103
>KOG0950|consensus
Probab=99.92 E-value=1.2e-24 Score=238.65 Aligned_cols=370 Identities=19% Similarity=0.244 Sum_probs=244.7
Q ss_pred HHHHHHHhCCCCCCCHHHHhhh--hhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHH
Q psy1604 208 ILVKNLKKSNYTKPTPIQKYAI--PAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRE 285 (693)
Q Consensus 208 ~l~~~l~~~g~~~p~~~Q~~ai--~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 285 (693)
...-..+..|..+++.||.+++ +.++.++|.+..+||+.|||+++.+-++..++.... .++++.|..+
T Consensus 211 ~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr----------~~llilp~vs 280 (1008)
T KOG0950|consen 211 VSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR----------NVLLILPYVS 280 (1008)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh----------ceeEecceee
Confidence 3333445679999999999986 567788999999999999999999999988876542 5899999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC--CcCCCceeEEEEccchhhhhC
Q psy1604 286 LVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG--RISLASVRFVVLDEADRMLDM 363 (693)
Q Consensus 286 La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~--~~~l~~~~~lVlDEah~l~~~ 363 (693)
.++.-...+..+....++.+...+|..+..... +.-++.|||.++-..++.+- .-.+..+.+||+||.|.+.+.
T Consensus 281 iv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 281 IVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 998888889999988999998888776655432 34589999999876554321 113567899999999999999
Q ss_pred CchHHHHHHhccCCCCCC-CCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCc
Q psy1604 364 GFLGDIQHVMQHSTMPDV-ANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGF 442 (693)
Q Consensus 364 ~~~~~i~~i~~~~~~~~~-~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~ 442 (693)
+....++.++.+..+... ...|+|+||||+|+. ..+..+++.. +.....+.+.+.+.-.
T Consensus 357 ~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~-------------~lL~~~L~A~-~y~t~fRPv~L~E~ik------ 416 (1008)
T KOG0950|consen 357 GRGAILELLLAKILYENLETSVQIIGMSATIPNN-------------SLLQDWLDAF-VYTTRFRPVPLKEYIK------ 416 (1008)
T ss_pred ccchHHHHHHHHHHHhccccceeEeeeecccCCh-------------HHHHHHhhhh-heecccCcccchhccC------
Confidence 988888887765433322 235899999999753 1122222210 0001111111100000
Q ss_pred ccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc--cCCCc
Q psy1604 443 LGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE--KDEDG 520 (693)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~--~~~~k 520 (693)
.....+...-...++ ..........+..+ . +.+..++.+ ..+.+
T Consensus 417 ------------------~G~~i~~~~r~~~lr-~ia~l~~~~~g~~d--------------p-D~~v~L~tet~~e~~~ 462 (1008)
T KOG0950|consen 417 ------------------PGSLIYESSRNKVLR-EIANLYSSNLGDED--------------P-DHLVGLCTETAPEGSS 462 (1008)
T ss_pred ------------------CCcccccchhhHHHH-HhhhhhhhhcccCC--------------C-cceeeehhhhhhcCCe
Confidence 000000000000000 00000000000000 0 222222222 34556
Q ss_pred EEEEecChHhHHHHHHHHhhC--------------------------------------CCceEEecCCCCHHHHHHHHH
Q psy1604 521 VIVFVSTIRNADFIACYLCET--------------------------------------EIATTSIHGSRLQSQREQAIH 562 (693)
Q Consensus 521 vLVF~~s~~~a~~l~~~L~~~--------------------------------------~~~v~~lhg~~~~~~R~~~~~ 562 (693)
+||||+++..|+.++..+... .+.+.++|++++..+|+.+..
T Consensus 463 ~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~ 542 (1008)
T KOG0950|consen 463 VLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEA 542 (1008)
T ss_pred EEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHH
Confidence 999999999999887655221 234788999999999999999
Q ss_pred HHhcCCCcEEEEeCcccccCCCCCCCEEEEcC----CCCChhhhhhhhcccccCC--CcceEEEEeCCCCchHHHHHHHH
Q psy1604 563 DFKTKKMKVLVATAVASRGLDIKGIRHVINYD----LPQEIDEYVHRIGRTGRVG--NKGRATSFYDPDQDGAIAKDLVR 636 (693)
Q Consensus 563 ~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d----~p~s~~~y~Qr~GRagR~G--~~G~~~~~~~~~~d~~~~~~l~~ 636 (693)
.|+.|...|++||++++.|+|+|...++|-.- ...+..+|.||+|||||+| ..|.+++++.+.+.. . ..+
T Consensus 543 afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~-~---~~~ 618 (1008)
T KOG0950|consen 543 AFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKK-R---VRE 618 (1008)
T ss_pred HHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchh-H---HHH
Confidence 99999999999999999999999988888643 2347889999999999997 469999999865432 2 224
Q ss_pred HHHHcCCCchhHH
Q psy1604 637 ILEQAGQPVPEFL 649 (693)
Q Consensus 637 ~l~~~~~~vp~~l 649 (693)
++...-..+-..|
T Consensus 619 lv~~~~~~~~S~l 631 (1008)
T KOG0950|consen 619 LVNSPLKPLNSCL 631 (1008)
T ss_pred HHhcccccccccc
Confidence 4444444444444
No 104
>KOG0920|consensus
Probab=99.92 E-value=2.2e-24 Score=241.62 Aligned_cols=345 Identities=18% Similarity=0.204 Sum_probs=226.6
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh-
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA- 298 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~- 298 (693)
..+..+.+.+.++.+++.+++++.||+|||......+|+.....+ ..+++++..|+|.-|..+++++.+-.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--------~~~~IicTQPRRIsAIsvAeRVa~ER~ 244 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--------AACNIICTQPRRISAISVAERVAKERG 244 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--------CCCeEEecCCchHHHHHHHHHHHHHhc
Confidence 457788899999999999999999999999998888888887765 34579999999999999988876543
Q ss_pred cCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCC
Q psy1604 299 YSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTM 378 (693)
Q Consensus 299 ~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~ 378 (693)
...+-.+.......+ .......+++||.|.|++.+... -.+..+.+||+||+| +++...++..++.+..+
T Consensus 245 ~~~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVH---ER~i~~DflLi~lk~lL 314 (924)
T KOG0920|consen 245 ESLGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVH---ERSINTDFLLILLKDLL 314 (924)
T ss_pred cccCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhccC-cccccCceeeeeeEE---EccCCcccHHHHHHHHh
Confidence 222222322222111 12233789999999999999874 368899999999999 56666666666655556
Q ss_pred CCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCcc
Q psy1604 379 PDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDV 458 (693)
Q Consensus 379 ~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (693)
+..++.++++||||+..+........ ...+.....++....+...|......+. .... ... . .
T Consensus 315 ~~~p~LkvILMSAT~dae~fs~YF~~--------~pvi~i~grtfpV~~~fLEDil~~~~~~-~~~~-~~~----~---~ 377 (924)
T KOG0920|consen 315 PRNPDLKVILMSATLDAELFSDYFGG--------CPVITIPGRTFPVKEYFLEDILSKTGYV-SEDD-SAR----S---G 377 (924)
T ss_pred hhCCCceEEEeeeecchHHHHHHhCC--------CceEeecCCCcchHHHHHHHHHHHhccc-cccc-ccc----c---c
Confidence 66689999999999875443321110 0001111111111111111100000000 0000 000 0 0
Q ss_pred ccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHh-ccCCCcEEEEecChHhHHHHHHH
Q psy1604 459 ANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLR-EKDEDGVIVFVSTIRNADFIACY 537 (693)
Q Consensus 459 ~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~-~~~~~kvLVF~~s~~~a~~l~~~ 537 (693)
.... . +.... ...+....+..-+..++..+- ....+.+|||.+.+.++..+.+.
T Consensus 378 ~~~~-----~-----~~~~~---------------~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~ 432 (924)
T KOG0920|consen 378 PERS-----Q-----LRLAR---------------LKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKEL 432 (924)
T ss_pred cccC-----c-----ccccc---------------chhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHH
Confidence 0000 0 00000 000000011122233333332 34578899999999999999999
Q ss_pred HhhC-------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEE--------cCCCC-----
Q psy1604 538 LCET-------EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVIN--------YDLPQ----- 597 (693)
Q Consensus 538 L~~~-------~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~--------~d~p~----- 597 (693)
|... .+-+..+|+.|+..+++.+++....|..+|++||++++.+|.|++|.+||. ||+-.
T Consensus 433 L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l 512 (924)
T KOG0920|consen 433 LEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCL 512 (924)
T ss_pred hhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchh
Confidence 8642 356789999999999999999999999999999999999999999999996 44332
Q ss_pred -----ChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 598 -----EIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 598 -----s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
|.+.-.||.|||||. ++|.||.+|+..
T Consensus 513 ~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 513 LLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred heeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 556667999999999 999999999853
No 105
>KOG0922|consensus
Probab=99.91 E-value=2.8e-23 Score=220.88 Aligned_cols=306 Identities=18% Similarity=0.237 Sum_probs=210.5
Q ss_pred CCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh-c
Q psy1604 221 PTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA-Y 299 (693)
Q Consensus 221 p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~-~ 299 (693)
.+.+-.+.+..+.+++-+++.++||||||.+.. +.|.+.+. ....++-|..|+|.-|..+++....-. .
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQip----QyL~eaG~------~~~g~I~~TQPRRVAavslA~RVAeE~~~ 121 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQIP----QYLAEAGF------ASSGKIACTQPRRVAAVSLAKRVAEEMGC 121 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccccHh----HHHHhccc------ccCCcEEeecCchHHHHHHHHHHHHHhCC
Confidence 345566777788889999999999999999732 33443332 233459999999988887776654432 2
Q ss_pred CCCeeE--EEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCC
Q psy1604 300 SSVLKI--CLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHST 377 (693)
Q Consensus 300 ~~~l~~--~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~ 377 (693)
..+-.+ ...+.+.. .....|.+.|-|.|++-+.... .++++++||||||| ++....++..-+.+..
T Consensus 122 ~lG~~VGY~IRFed~t--------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAH---ERsl~TDiLlGlLKki 189 (674)
T KOG0922|consen 122 QLGEEVGYTIRFEDST--------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAH---ERSLHTDILLGLLKKI 189 (674)
T ss_pred CcCceeeeEEEecccC--------CCceeEEEecchHHHHHHhcCC-ccccccEEEEechh---hhhhHHHHHHHHHHHH
Confidence 222222 22222221 2346899999999998776555 48999999999999 5555555443332223
Q ss_pred CCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCc
Q psy1604 378 MPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPD 457 (693)
Q Consensus 378 ~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (693)
+..+++.+++++|||+..+...- .| .
T Consensus 190 ~~~R~~LklIimSATlda~kfS~--yF------------~---------------------------------------- 215 (674)
T KOG0922|consen 190 LKKRPDLKLIIMSATLDAEKFSE--YF------------N---------------------------------------- 215 (674)
T ss_pred HhcCCCceEEEEeeeecHHHHHH--Hh------------c----------------------------------------
Confidence 34445789999999986432211 11 0
Q ss_pred cccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccc----hhHHHHHHHHHhccCCCcEEEEecChHhHHH
Q psy1604 458 VANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPK----QQKKKKLLELLREKDEDGVIVFVSTIRNADF 533 (693)
Q Consensus 458 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~ 533 (693)
. ..+-.+......+...+...+. ..-+..+.++....+.+-+|||....++++.
T Consensus 216 ------------------~----a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~ 273 (674)
T KOG0922|consen 216 ------------------N----APILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEA 273 (674)
T ss_pred ------------------C----CceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Confidence 0 0000011111122222222122 2334555566666788899999999999999
Q ss_pred HHHHHhhC----C----CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCC----------
Q psy1604 534 IACYLCET----E----IATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDL---------- 595 (693)
Q Consensus 534 l~~~L~~~----~----~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~---------- 595 (693)
.++.|.+. . ..+..+||.|+.+++.++++.-..|..+|++||++++..|.|+++.+||.-++
T Consensus 274 ~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~ 353 (674)
T KOG0922|consen 274 ACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRT 353 (674)
T ss_pred HHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecccc
Confidence 99998764 1 13578999999999999999999999999999999999999999999997442
Q ss_pred --------CCChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 596 --------PQEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 596 --------p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
|-|.++-.||.|||||. .+|+|+-+|+.+
T Consensus 354 g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~ 390 (674)
T KOG0922|consen 354 GLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTES 390 (674)
T ss_pred CccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHH
Confidence 45888899999999999 699999999854
No 106
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=2e-23 Score=235.34 Aligned_cols=306 Identities=20% Similarity=0.222 Sum_probs=208.9
Q ss_pred CHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcC-
Q psy1604 222 TPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYS- 300 (693)
Q Consensus 222 ~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~- 300 (693)
+....+.+.++.+++.++++++||||||.+.-..+++... ....++.++-|.|--|..+++.+......
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----------~~~g~I~~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----------GIAGKIGCTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----------ccCCeEEecCchHHHHHHHHHHHHHHhCCC
Confidence 4455566667778899999999999999976555555433 22347999999998888888777654322
Q ss_pred CCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCC
Q psy1604 301 SVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPD 380 (693)
Q Consensus 301 ~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~ 380 (693)
.+-.|....- +.........|-+.|.|.|++.+..... ++.+++|||||+| +++...++..-+.+..++.
T Consensus 122 ~G~~VGY~iR------fe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaH---ERSl~tDilLgllk~~~~~ 191 (845)
T COG1643 122 LGETVGYSIR------FESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAH---ERSLNTDILLGLLKDLLAR 191 (845)
T ss_pred cCceeeEEEE------eeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchh---hhhHHHHHHHHHHHHHHhh
Confidence 2322222110 1122234578999999999999887664 8999999999999 4444444433222221111
Q ss_pred -CCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccc
Q psy1604 381 -VANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVA 459 (693)
Q Consensus 381 -~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (693)
+++.++|.||||+..+-.. ..| ..
T Consensus 192 rr~DLKiIimSATld~~rfs--~~f------------~~----------------------------------------- 216 (845)
T COG1643 192 RRDDLKLIIMSATLDAERFS--AYF------------GN----------------------------------------- 216 (845)
T ss_pred cCCCceEEEEecccCHHHHH--HHc------------CC-----------------------------------------
Confidence 2368999999998653211 111 00
Q ss_pred cccceeecccCchhhhcceEEEEeecccccccceeEEEEEcc-----chhHHHHHHHHHhccCCCcEEEEecChHhHHHH
Q psy1604 460 NRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVP-----KQQKKKKLLELLREKDEDGVIVFVSTIRNADFI 534 (693)
Q Consensus 460 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l 534 (693)
..+ -........+...+.... -...+...+........+.+|||.+..++++..
T Consensus 217 -----------------apv----i~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~ 275 (845)
T COG1643 217 -----------------APV----IEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERT 275 (845)
T ss_pred -----------------CCE----EEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHH
Confidence 000 000001111111110000 122233333444446788899999999999999
Q ss_pred HHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCC---------------
Q psy1604 535 ACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDL--------------- 595 (693)
Q Consensus 535 ~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~--------------- 595 (693)
++.|.+ ....+..+||.++.+++.++++--..|+.+|++||++++.+|.|+++.+||.-+.
T Consensus 276 ~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L 355 (845)
T COG1643 276 AEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRL 355 (845)
T ss_pred HHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceee
Confidence 999987 3477899999999999999998888888889999999999999999999997443
Q ss_pred ---CCChhhhhhhhcccccCCCcceEEEEeCC
Q psy1604 596 ---PQEIDEYVHRIGRTGRVGNKGRATSFYDP 624 (693)
Q Consensus 596 ---p~s~~~y~Qr~GRagR~G~~G~~~~~~~~ 624 (693)
|-|.++..||.|||||. .+|.||-+|+.
T Consensus 356 ~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse 386 (845)
T COG1643 356 ETEPISKASADQRAGRAGRT-GPGICYRLYSE 386 (845)
T ss_pred eEEEechhhhhhhccccccC-CCceEEEecCH
Confidence 34778889999999999 79999999984
No 107
>KOG0387|consensus
Probab=99.90 E-value=8.2e-23 Score=219.34 Aligned_cols=382 Identities=17% Similarity=0.200 Sum_probs=231.2
Q ss_pred CCCHHHHhhhhhhh----cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGL----EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 220 ~p~~~Q~~ai~~il----~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
.|++||++.+.++. ++..-|+..++|.|||++. +..|..|..... -...+|||||. .+..||.+++.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k-------~~~paLIVCP~-Tii~qW~~E~~ 275 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGK-------LTKPALIVCPA-TIIHQWMKEFQ 275 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhccc-------ccCceEEEccH-HHHHHHHHHHH
Confidence 57899999999887 3567899999999999773 333444433321 11368999996 78899999999
Q ss_pred HHhcCCCeeEEEEeCCCCh---------HHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhh
Q psy1604 296 KYAYSSVLKICLHYGGASS---------MHFNRQL----EKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~---------~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~ 362 (693)
+|.. .+++..+++.... ..+...+ .....|+|+|+..+.-. ...+.-..++++|+||.|++-+
T Consensus 276 ~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 276 TWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred HhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccC
Confidence 9964 4677777765441 1111111 23567999999887432 2233345689999999999976
Q ss_pred CCchHHHHHHhccCCCCCCCCcceEEeeccC-chhHHhhhhhhhhhchhhhHHHHhhc----------cccccceeEEE-
Q psy1604 363 MGFLGDIQHVMQHSTMPDVANRQTLMFSATF-PETIQKKGCNILVATMGRLKDILDRG----------RISLASVRFVV- 430 (693)
Q Consensus 363 ~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~-~~~~~~~~~~~~~~~~~~l~~~l~~~----------~~~~~~~~~~~- 430 (693)
.+ ..+...+..+. ..+.+.+|+|+ .+.+..+...|-...|+++.....-. .........+.
T Consensus 352 pn--s~islackki~-----T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~ 424 (923)
T KOG0387|consen 352 PN--SKISLACKKIR-----TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQT 424 (923)
T ss_pred Cc--cHHHHHHHhcc-----ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHH
Confidence 65 33444444332 67889999996 45555555444444454443221110 00000000000
Q ss_pred echhhhhhhcCcccchhHHhhcccCC-ccccccceeecccCchhhhcce------------------EEEEeec--cccc
Q psy1604 431 LDEADRMLDMGFLGDIQHVMQHSTMP-DVANRQTLMFSATFPETIQKNY------------------IFIAVGI--IGGA 489 (693)
Q Consensus 431 ~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~~~l~~~~------------------~~~~~~~--~~~~ 489 (693)
.......+..-....+...++..... .++......+.-.+....+..| .+..... ....
T Consensus 425 aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICn 504 (923)
T KOG0387|consen 425 AYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICN 504 (923)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcC
Confidence 00000000000000011111111111 1111111111111110000000 0000000 0000
Q ss_pred cccee--------EEE---EEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHh-hCCCceEEecCCCCHH
Q psy1604 490 STDVV--------QTI---LEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLC-ETEIATTSIHGSRLQS 555 (693)
Q Consensus 490 ~~~~~--------~~~---~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~-~~~~~v~~lhg~~~~~ 555 (693)
.+++. +.. .......|...+..++.. ..+.++|+|..++...+.|..+|. ..++.+..+.|..+..
T Consensus 505 HPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~ 584 (923)
T KOG0387|consen 505 HPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAA 584 (923)
T ss_pred CcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccc
Confidence 11111 000 112234577777777765 566799999999999999999998 6899999999999999
Q ss_pred HHHHHHHHHhcCCC--cEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEE
Q psy1604 556 QREQAIHDFKTKKM--KVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSF 621 (693)
Q Consensus 556 ~R~~~~~~F~~g~~--~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~ 621 (693)
.|..++++|.++.. -.|++|.+.+-|+|+..++-||.||+.|||+.-.|..-||.|.||+-.+++|
T Consensus 585 ~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 585 LRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred hhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 99999999997663 3589999999999999999999999999999999999999999998776665
No 108
>KOG0384|consensus
Probab=99.89 E-value=5e-23 Score=229.87 Aligned_cols=380 Identities=17% Similarity=0.212 Sum_probs=230.4
Q ss_pred CCCCHHHHhhhhhhh----cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGL----EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il----~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
..+++||.+.+.+++ +++++|++..+|.|||+. .+..|..|..... ..+ ..|||+|...+ ..|.+++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~------~~g-pflvvvplst~-~~W~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ------IHG-PFLVVVPLSTI-TAWEREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhh------ccC-CeEEEeehhhh-HHHHHHH
Confidence 579999999999887 578999999999999976 3334444433221 112 36999998554 5688999
Q ss_pred HHHhcCCCeeEEEEeCCCChHHHHHHHh----c-----CCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCc
Q psy1604 295 CKYAYSSVLKICLHYGGASSMHFNRQLE----K-----GCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGF 365 (693)
Q Consensus 295 ~~~~~~~~l~~~~~~gg~~~~~~~~~~~----~-----~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~ 365 (693)
..|. .+++.+++|.......+++.. . ..+++++|++.++..-. .+.--.+.++++||||+|.+..
T Consensus 440 ~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~~- 513 (1373)
T KOG0384|consen 440 ETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKNDE- 513 (1373)
T ss_pred HHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCchH-
Confidence 9986 578888888887776666653 1 47899999999976332 2222356899999999996442
Q ss_pred hHHHHHHhccCCCCCCCCcceEEeeccC-chhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCccc
Q psy1604 366 LGDIQHVMQHSTMPDVANRQTLMFSATF-PETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLG 444 (693)
Q Consensus 366 ~~~i~~i~~~~~~~~~~~~q~lllSAT~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 444 (693)
..+...+.... ..+.+++|+|+ .+.+..+........|.++..+-....-. .. ..+..-.-+..-+..
T Consensus 514 -~~l~~~l~~f~-----~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~-~~----~~e~~~~~L~~~L~P 582 (1373)
T KOG0384|consen 514 -SKLYESLNQFK-----MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF-DE----ETEEQVRKLQQILKP 582 (1373)
T ss_pred -HHHHHHHHHhc-----ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh-cc----hhHHHHHHHHHHhhH
Confidence 22333333222 44678899996 45555555433223333321111000000 00 000000000000111
Q ss_pred chhHHhhcccCCccccccceeecccCchh--------hhcceEEEEeecccccccceeEEE-----------EEc-----
Q psy1604 445 DIQHVMQHSTMPDVANRQTLMFSATFPET--------IQKNYIFIAVGIIGGASTDVVQTI-----------LEV----- 500 (693)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----- 500 (693)
-+...++....+.++....-.+...+.+- +.++|-+..-+..+.. +++...+ ..-
T Consensus 583 ~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~-~~lLNimmELkKccNHpyLi~gaee~ 661 (1373)
T KOG0384|consen 583 FLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGST-PSLLNIMMELKKCCNHPYLIKGAEEK 661 (1373)
T ss_pred HHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCC-chHHHHHHHHHHhcCCccccCcHHHH
Confidence 11111222222222222111111111110 1111111111111111 1100000 000
Q ss_pred ------------------cchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHH
Q psy1604 501 ------------------PKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQA 560 (693)
Q Consensus 501 ------------------~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~ 560 (693)
....|+..|-++|.. ..+++||||.+-.+..+.|+++|...+++...|.|....+.|+++
T Consensus 662 ~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~A 741 (1373)
T KOG0384|consen 662 ILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQA 741 (1373)
T ss_pred HHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHH
Confidence 001122222223322 456899999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceE--EEEeCCC
Q psy1604 561 IHDFKT---KKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRA--TSFYDPD 625 (693)
Q Consensus 561 ~~~F~~---g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~--~~~~~~~ 625 (693)
++.|.+ .++..|+||.+.+.|||+..++.||.||..|||..-+|...||+|.||+-.+ |-|++.+
T Consensus 742 IDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 742 IDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred HHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 999985 4577899999999999999999999999999999999999999999998765 4556643
No 109
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.8e-21 Score=218.19 Aligned_cols=126 Identities=24% Similarity=0.331 Sum_probs=113.5
Q ss_pred EccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC
Q psy1604 499 EVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA 576 (693)
Q Consensus 499 ~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~ 576 (693)
+.....|...+.+.+.. ..+.++||||+|+..++.|+..|+..++++..+|+ .+.+|+..+..|+.+...|+|||+
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 34556788999988865 47789999999999999999999999999999997 488999999999999999999999
Q ss_pred cccccCCCC---CCC-----EEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCC
Q psy1604 577 VASRGLDIK---GIR-----HVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQ 626 (693)
Q Consensus 577 v~~~GiDip---~v~-----~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~ 626 (693)
+++||+||+ .|. +||+++.|.|...|.||+|||||.|.+|.++.|++.++
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 999999998 454 45899999999999999999999999999999998654
No 110
>KOG0923|consensus
Probab=99.88 E-value=7.1e-22 Score=207.70 Aligned_cols=309 Identities=21% Similarity=0.229 Sum_probs=205.2
Q ss_pred CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 217 NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
.....+++-.+.+.++..++-++|.+.||||||.+ +| +.|...+-. ..+.++=+..|.|.-|..++....+
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iP--QyL~EaGyt-----k~gk~IgcTQPRRVAAmSVAaRVA~ 332 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IP--QYLYEAGYT-----KGGKKIGCTQPRRVAAMSVAARVAE 332 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--cc--HHHHhcccc-----cCCceEeecCcchHHHHHHHHHHHH
Confidence 45567888999999999999999999999999996 33 334433311 2334588999999999988776654
Q ss_pred Hh-cCCCeeE--EEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHh
Q psy1604 297 YA-YSSVLKI--CLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVM 373 (693)
Q Consensus 297 ~~-~~~~l~~--~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~ 373 (693)
-. ...+-.+ ...+. .......-|=+.|.|+|++-+.... .|.++++||||||| ++....++.--+
T Consensus 333 EMgvkLG~eVGYsIRFE--------dcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAH---ERTL~TDILfgL 400 (902)
T KOG0923|consen 333 EMGVKLGHEVGYSIRFE--------DCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAH---ERTLHTDILFGL 400 (902)
T ss_pred HhCcccccccceEEEec--------cccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhh---hhhhhhhHHHHH
Confidence 32 1111111 11111 1112334677999999988665433 68899999999999 444333333222
Q ss_pred ccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcc
Q psy1604 374 QHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHS 453 (693)
Q Consensus 374 ~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 453 (693)
-....+.+++.++++.|||+..+-+.. .++.
T Consensus 401 vKDIar~RpdLKllIsSAT~DAekFS~--------------fFDd----------------------------------- 431 (902)
T KOG0923|consen 401 VKDIARFRPDLKLLISSATMDAEKFSA--------------FFDD----------------------------------- 431 (902)
T ss_pred HHHHHhhCCcceEEeeccccCHHHHHH--------------hccC-----------------------------------
Confidence 222233446889999999986432221 1100
Q ss_pred cCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHH----HHHHHhccCCCcEEEEecChH
Q psy1604 454 TMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKK----LLELLREKDEDGVIVFVSTIR 529 (693)
Q Consensus 454 ~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----L~~~l~~~~~~kvLVF~~s~~ 529 (693)
.+++.. ...-..+.-.+...++.+-++. ++++....+.+-+|||....+
T Consensus 432 -----------------------apIF~i----PGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQe 484 (902)
T KOG0923|consen 432 -----------------------APIFRI----PGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQE 484 (902)
T ss_pred -----------------------CcEEec----cCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHH
Confidence 000000 0000001111111122222222 223333356688999999999
Q ss_pred hHHHHHHHHhhC---------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCC-----
Q psy1604 530 NADFIACYLCET---------EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDL----- 595 (693)
Q Consensus 530 ~a~~l~~~L~~~---------~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~----- 595 (693)
..+...+.|.+. .+-++++|+.+++..+.++++--..|..+|++||++++..|.|+++.+||.-++
T Consensus 485 EIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~ns 564 (902)
T KOG0923|consen 485 EIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNS 564 (902)
T ss_pred HHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccC
Confidence 988877776542 355789999999999999999999999999999999999999999999996432
Q ss_pred -------------CCChhhhhhhhcccccCCCcceEEEEeC
Q psy1604 596 -------------PQEIDEYVHRIGRTGRVGNKGRATSFYD 623 (693)
Q Consensus 596 -------------p~s~~~y~Qr~GRagR~G~~G~~~~~~~ 623 (693)
|-|.++-.||+|||||.| +|+|+-+|+
T Consensus 565 ynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 565 YNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred cCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 457778889999999995 999999998
No 111
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.87 E-value=7.5e-21 Score=218.70 Aligned_cols=324 Identities=22% Similarity=0.194 Sum_probs=203.2
Q ss_pred CCCHHHHhhhhhhhcC---C-CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLEG---R-DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g---~-~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
.+++.|..++..+.+. . .+++.||||+|||.+.+.+++..+.... ....+++++.|++.+++++++.++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~-------~~~~r~i~vlP~~t~ie~~~~r~~ 267 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI-------KLKSRVIYVLPFRTIIEDMYRRAK 267 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc-------cccceEEEEccHHHHHHHHHHHHH
Confidence 3489999999888753 4 7889999999999999998887776531 235589999999999999999999
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHH-----H---------hcCCcEEEechhhHHHHHh-cCCcC-C--CceeEEEEccc
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQ-----L---------EKGCNILVATMGRLKDILD-RGRIS-L--ASVRFVVLDEA 357 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~-----~---------~~~~~IlV~Tp~~L~~~l~-~~~~~-l--~~~~~lVlDEa 357 (693)
.+.....+.....++.......... . .....+.++||-....... ..... + -..+++||||+
T Consensus 268 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~ 347 (733)
T COG1203 268 EIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEV 347 (733)
T ss_pred hhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccH
Confidence 8765544333322222221111110 0 0113344444444433211 11111 1 12478999999
Q ss_pred hhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhh
Q psy1604 358 DRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRM 437 (693)
Q Consensus 358 h~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~ 437 (693)
|.+.+......+..++.... .-+..+|+||||+|..+............ ........
T Consensus 348 h~~~~~~~~~~l~~~i~~l~---~~g~~ill~SATlP~~~~~~l~~~~~~~~-----------~~~~~~~~--------- 404 (733)
T COG1203 348 HLYADETMLAALLALLEALA---EAGVPVLLMSATLPPFLKEKLKKALGKGR-----------EVVENAKF--------- 404 (733)
T ss_pred HhhcccchHHHHHHHHHHHH---hCCCCEEEEecCCCHHHHHHHHHHHhccc-----------ceeccccc---------
Confidence 99876633333333333221 12678999999999887765444310000 00000000
Q ss_pred hhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEE-EEccchhHHHHHHHHH--h
Q psy1604 438 LDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTI-LEVPKQQKKKKLLELL--R 514 (693)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~L~~~l--~ 514 (693)
.... ..+. +.+.. ........ ..+.... .
T Consensus 405 ---------------------------------~~~~-~e~~-------------~~~~~~~~~~~~~~-~~~~~~~~~~ 436 (733)
T COG1203 405 ---------------------------------CPKE-DEPG-------------LKRKERVDVEDGPQ-EELIELISEE 436 (733)
T ss_pred ---------------------------------cccc-cccc-------------cccccchhhhhhhh-Hhhhhcchhh
Confidence 0000 0000 00000 00000000 0111111 1
Q ss_pred ccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHh----cCCCcEEEEeCcccccCCCCCCCEE
Q psy1604 515 EKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFK----TKKMKVLVATAVASRGLDIKGIRHV 590 (693)
Q Consensus 515 ~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~----~g~~~ILVaT~v~~~GiDip~v~~V 590 (693)
.....+++|.|||+..|..++..|+..+.++..+||.+...+|.+.++.++ .....|+|||++.+.|+|| +.+++
T Consensus 437 ~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~m 515 (733)
T COG1203 437 VKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVL 515 (733)
T ss_pred hccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCee
Confidence 256788999999999999999999988878999999999999998887554 4678899999999999999 47777
Q ss_pred EEcCCCCChhhhhhhhcccccCC--CcceEEEEeCC
Q psy1604 591 INYDLPQEIDEYVHRIGRTGRVG--NKGRATSFYDP 624 (693)
Q Consensus 591 I~~d~p~s~~~y~Qr~GRagR~G--~~G~~~~~~~~ 624 (693)
|-= +..+++++||+||++|-| ..|.++++...
T Consensus 516 ITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 516 ITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred eec--CCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 653 445899999999999999 56777777653
No 112
>KOG0390|consensus
Probab=99.87 E-value=1.7e-20 Score=207.29 Aligned_cols=377 Identities=15% Similarity=0.121 Sum_probs=223.6
Q ss_pred CCCHHHHhhhhhhhcC----------CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLEG----------RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQ 289 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g----------~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q 289 (693)
.++|+|++.+..+.++ ..+|++..+|+|||+. .++.++.+++..+... ..-.+.|||+|. .|+..
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~---~~~~k~lVV~P~-sLv~n 312 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAK---PLINKPLVVAPS-SLVNN 312 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCcc---ccccccEEEccH-HHHHH
Confidence 5789999999887632 3588999999999998 5556666665532210 112478999995 89999
Q ss_pred HHHHHHHHhcCCCeeEEEEeCCCCh-HHHHHHH------hcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhh
Q psy1604 290 IHEVACKYAYSSVLKICLHYGGASS-MHFNRQL------EKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 290 ~~~~~~~~~~~~~l~~~~~~gg~~~-~~~~~~~------~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~ 362 (693)
|.++|.+|.....+....+++.... ......+ .-..-|++.+++.+.+..+ .+....+++||+||.|++.+
T Consensus 313 WkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 313 WKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccc
Confidence 9999999987667788888887764 1111111 1134688889999987665 34567889999999999854
Q ss_pred CCchHHHHHHhccCCCCCCCCcceEEeeccC-chhHHhhhhhhhhhchhhhHHHHh------hcccc-------------
Q psy1604 363 MGFLGDIQHVMQHSTMPDVANRQTLMFSATF-PETIQKKGCNILVATMGRLKDILD------RGRIS------------- 422 (693)
Q Consensus 363 ~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~-~~~~~~~~~~~~~~~~~~l~~~l~------~~~~~------------- 422 (693)
. ...+.+.+.... .++.|++|+|+ .+++..+..-+-...|.-+..... ...+.
T Consensus 391 ~--~s~~~kaL~~l~-----t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~ 463 (776)
T KOG0390|consen 391 S--DSLTLKALSSLK-----TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER 463 (776)
T ss_pred h--hhHHHHHHHhcC-----CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh
Confidence 3 334444444433 66789999997 333333322222222222111110 00000
Q ss_pred ---------------------------ccceeEEE-echhhhhhhcCcccchhHHhhcc-----------cCCccccccc
Q psy1604 423 ---------------------------LASVRFVV-LDEADRMLDMGFLGDIQHVMQHS-----------TMPDVANRQT 463 (693)
Q Consensus 423 ---------------------------~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 463 (693)
....++++ +.-... +...+..+....... .+....+.+.
T Consensus 464 ~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~--Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~ 541 (776)
T KOG0390|consen 464 EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPI--QKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPS 541 (776)
T ss_pred HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHH--HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHH
Confidence 00011111 000000 000000000000000 0000111111
Q ss_pred eeecccCchhhhcceEEEEeecccccccc-------eeEEEEEccchhHHHHHHHHH---hccCCCcEEEEecChHhHHH
Q psy1604 464 LMFSATFPETIQKNYIFIAVGIIGGASTD-------VVQTILEVPKQQKKKKLLELL---REKDEDGVIVFVSTIRNADF 533 (693)
Q Consensus 464 ~~~~~t~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~k~~~L~~~l---~~~~~~kvLVF~~s~~~a~~ 533 (693)
+.. +-..........++. .........+..|+..|..++ ++....++.+..+.+...+.
T Consensus 542 L~~-----------~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl 610 (776)
T KOG0390|consen 542 LLL-----------LCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDL 610 (776)
T ss_pred hhc-----------ccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHH
Confidence 110 000000000000000 001111112345555565555 23344455555667777777
Q ss_pred HHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCC--c-EEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccc
Q psy1604 534 IACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKM--K-VLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTG 610 (693)
Q Consensus 534 l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~--~-ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRag 610 (693)
+...++-.|+.+..+||.|+..+|+.+++.|.+... . .|.+|.+.++||++-+.+.||.||+.|||+.-.|.++|+.
T Consensus 611 ~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~ 690 (776)
T KOG0390|consen 611 FEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAW 690 (776)
T ss_pred HHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhc
Confidence 777777789999999999999999999999986432 3 5677889999999999999999999999999999999999
Q ss_pred cCCCcceEEEEeC
Q psy1604 611 RVGNKGRATSFYD 623 (693)
Q Consensus 611 R~G~~G~~~~~~~ 623 (693)
|.||+-.|+++-.
T Consensus 691 RdGQKk~v~iYrL 703 (776)
T KOG0390|consen 691 RDGQKKPVYIYRL 703 (776)
T ss_pred cCCCcceEEEEEe
Confidence 9999998887744
No 113
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.87 E-value=8.4e-20 Score=201.62 Aligned_cols=293 Identities=25% Similarity=0.337 Sum_probs=191.7
Q ss_pred HHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHH
Q psy1604 208 ILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELV 287 (693)
Q Consensus 208 ~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 287 (693)
.+-+.+++.....|+..|+--...+..|+++-+.||||.|||.--++..+- +. ..+.++++++||..|+
T Consensus 70 ~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~--~a---------~kgkr~yii~PT~~Lv 138 (1187)
T COG1110 70 EFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLY--LA---------KKGKRVYIIVPTTTLV 138 (1187)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHH--HH---------hcCCeEEEEecCHHHH
Confidence 344445554444999999999999999999999999999999743332222 22 2345899999999999
Q ss_pred HHHHHHHHHHhcCCC-eeEEEEeCCC-ChHHHHH---HHh-cCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhh
Q psy1604 288 MQIHEVACKYAYSSV-LKICLHYGGA-SSMHFNR---QLE-KGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRML 361 (693)
Q Consensus 288 ~Q~~~~~~~~~~~~~-l~~~~~~gg~-~~~~~~~---~~~-~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~ 361 (693)
.|+++.+.++....+ .++..+|.+. +..+... .+. .+.||+|+|.+-|...++. +.-.++++|++|.+|.++
T Consensus 139 ~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 139 RQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred HHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHH
Confidence 999999999986555 5554434443 3333222 222 3699999999988776653 112478999999999887
Q ss_pred hCCchHHHHHHhccCCCC----------------------------------------CCCCcceEEeeccCchhHHhhh
Q psy1604 362 DMGFLGDIQHVMQHSTMP----------------------------------------DVANRQTLMFSATFPETIQKKG 401 (693)
Q Consensus 362 ~~~~~~~i~~i~~~~~~~----------------------------------------~~~~~q~lllSAT~~~~~~~~~ 401 (693)
..+ ..+..++....++ .....+++..|||..+.-...
T Consensus 217 kas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~- 293 (1187)
T COG1110 217 KAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRL- 293 (1187)
T ss_pred hcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchH-
Confidence 544 2222222211100 011234444444432110000
Q ss_pred hhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEE
Q psy1604 402 CNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFI 481 (693)
Q Consensus 402 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~ 481 (693)
.+....+-.
T Consensus 294 -----------------------------------------------------------------------~LfReLlgF 302 (1187)
T COG1110 294 -----------------------------------------------------------------------KLFRELLGF 302 (1187)
T ss_pred -----------------------------------------------------------------------HHHHHHhCC
Confidence 011122222
Q ss_pred EeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecC---hHhHHHHHHHHhhCCCceEEecCCCCHHHHH
Q psy1604 482 AVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVST---IRNADFIACYLCETEIATTSIHGSRLQSQRE 558 (693)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s---~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~ 558 (693)
.++.......++...+... .-...+.++++.... ..|||++. ++.++.|+++|+.+|+++..+|+. .+
T Consensus 303 evG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~ 373 (1187)
T COG1110 303 EVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KE 373 (1187)
T ss_pred ccCccchhhhheeeeeccC---ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----ch
Confidence 2333333334444444433 333444455554333 57999999 999999999999999999999984 26
Q ss_pred HHHHHHhcCCCcEEEEe----CcccccCCCCC-CCEEEEcCCC
Q psy1604 559 QAIHDFKTKKMKVLVAT----AVASRGLDIKG-IRHVINYDLP 596 (693)
Q Consensus 559 ~~~~~F~~g~~~ILVaT----~v~~~GiDip~-v~~VI~~d~p 596 (693)
+.++.|..|++++||.+ .++-||||+|. +.++|+|+.|
T Consensus 374 ~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 374 EALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 78999999999999886 57899999997 7899998877
No 114
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.86 E-value=8.9e-21 Score=206.46 Aligned_cols=337 Identities=20% Similarity=0.218 Sum_probs=199.7
Q ss_pred CCCCHHHHhhhhhhh----cC-CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGL----EG-RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il----~g-~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
..|+.||..||..+. +| +.+|+++.||+|||.+ .+.++.+|++.+. ..++|||+.+++|+.|.+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~~--------~KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSGW--------VKRVLFLADRNALVDQAYGA 234 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhcch--------hheeeEEechHHHHHHHHHH
Confidence 368999999988765 33 4699999999999998 5677788877643 35899999999999999999
Q ss_pred HHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC-----CcCCCceeEEEEccchhhhhCCchHH
Q psy1604 294 ACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG-----RISLASVRFVVLDEADRMLDMGFLGD 368 (693)
Q Consensus 294 ~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-----~~~l~~~~~lVlDEah~l~~~~~~~~ 368 (693)
+..+..... ....+.+... ...++|.++|++.+...+... .+....+++||+|||||-. +..
T Consensus 235 f~~~~P~~~-~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~ 301 (875)
T COG4096 235 FEDFLPFGT-KMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSE 301 (875)
T ss_pred HHHhCCCcc-ceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----Hhh
Confidence 998874432 1112211111 114799999999999887654 2455669999999999754 333
Q ss_pred HHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhch---hhhHHHHhhccccccceeEEEechhhhhhhcCcccc
Q psy1604 369 IQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATM---GRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGD 445 (693)
Q Consensus 369 i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 445 (693)
...|+... +.-+++++||+...+..-...+.-+.| ..+...+...-+..+..-.+..+.. ..++..+
T Consensus 302 ~~~I~dYF------dA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~----~~G~~~~ 371 (875)
T COG4096 302 WSSILDYF------DAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFD----LDGWKPD 371 (875)
T ss_pred hHHHHHHH------HHHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeecc----ccCcCcC
Confidence 34444432 223456699986654433222211111 1122222221111111000000000 0000000
Q ss_pred hhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEE-EEccchhHHHHHHHHHhc--cC--CCc
Q psy1604 446 IQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTI-LEVPKQQKKKKLLELLRE--KD--EDG 520 (693)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~L~~~l~~--~~--~~k 520 (693)
... .+ ..+....+... .......+....+ .....+.-...+.+.+.. .. .+|
T Consensus 372 ~~s-----------er----------ek~~g~~i~~d--d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~K 428 (875)
T COG4096 372 AGS-----------ER----------EKLQGEAIDED--DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGK 428 (875)
T ss_pred ccc-----------hh----------hhhhccccCcc--cccccccccchhccccchHHHHHHHHHHHhccccCCCccCc
Confidence 000 00 00000000000 0000000000000 111112233445555554 22 578
Q ss_pred EEEEecChHhHHHHHHHHhhC-----CCceEEecCCCCHHHHHHHHHHHhc--CCCcEEEEeCcccccCCCCCCCEEEEc
Q psy1604 521 VIVFVSTIRNADFIACYLCET-----EIATTSIHGSRLQSQREQAIHDFKT--KKMKVLVATAVASRGLDIKGIRHVINY 593 (693)
Q Consensus 521 vLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~~~~~F~~--g~~~ILVaT~v~~~GiDip~v~~VI~~ 593 (693)
+||||.+..+|+.+...|... +--+..+.++-. +-+..++.|.. --.+|.|+.+++..|||+|.|.++|++
T Consensus 429 TIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~ 506 (875)
T COG4096 429 TIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFD 506 (875)
T ss_pred eEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeeh
Confidence 999999999999999999764 234667777743 33445666654 235688999999999999999999999
Q ss_pred CCCCChhhhhhhhcccccC
Q psy1604 594 DLPQEIDEYVHRIGRTGRV 612 (693)
Q Consensus 594 d~p~s~~~y~Qr~GRagR~ 612 (693)
..-+|...|.|++||.-|.
T Consensus 507 r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 507 RKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhhhHHHHHHHhcCcccc
Confidence 9999999999999999995
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.86 E-value=1.5e-19 Score=212.28 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=88.9
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCC--E
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIR--H 589 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~--~ 589 (693)
..++++|||+++.+..+.++..|.. .++++ +..+.. ..|.+++++|++++..||++|+.+++|||+|+.. .
T Consensus 672 ~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~ 748 (850)
T TIGR01407 672 ITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVC 748 (850)
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEE
Confidence 3557899999999999999999975 23333 333333 5788999999999999999999999999998865 5
Q ss_pred EEEcCCCCC------------------------------hhhhhhhhcccccCCCcceEEEEeCCC-CchHHHHHHHHHH
Q psy1604 590 VINYDLPQE------------------------------IDEYVHRIGRTGRVGNKGRATSFYDPD-QDGAIAKDLVRIL 638 (693)
Q Consensus 590 VI~~d~p~s------------------------------~~~y~Qr~GRagR~G~~G~~~~~~~~~-~d~~~~~~l~~~l 638 (693)
||...+|.. ...+.|.+||.-|..++.-++++++.. ....+-+.+.+.|
T Consensus 749 viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 749 LVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 777776631 123459999999997766667777654 2334445555555
Q ss_pred H
Q psy1604 639 E 639 (693)
Q Consensus 639 ~ 639 (693)
.
T Consensus 829 p 829 (850)
T TIGR01407 829 P 829 (850)
T ss_pred C
Confidence 4
No 116
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.85 E-value=6e-19 Score=198.52 Aligned_cols=133 Identities=23% Similarity=0.326 Sum_probs=116.7
Q ss_pred chhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCccc
Q psy1604 502 KQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVAS 579 (693)
Q Consensus 502 ~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~ 579 (693)
...+++.|++.++. ..+.++||||+++..++.+++.|.+.++++..+|+++++.+|.++++.|+.|++.|||||++++
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~ 503 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR 503 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc
Confidence 34566677777765 4577899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcC-----CCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHH
Q psy1604 580 RGLDIKGIRHVINYD-----LPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVR 636 (693)
Q Consensus 580 ~GiDip~v~~VI~~d-----~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~ 636 (693)
+|+|+|++++||++| .|.+..+|+||+|||||. ..|.+++|++.. +..+.+.+.+
T Consensus 504 rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~-~~~~~~ai~~ 563 (655)
T TIGR00631 504 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKI-TDSMQKAIEE 563 (655)
T ss_pred CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCC-CHHHHHHHHH
Confidence 999999999999988 799999999999999998 789999999844 4344444433
No 117
>KOG0389|consensus
Probab=99.85 E-value=2.5e-20 Score=200.07 Aligned_cols=405 Identities=18% Similarity=0.194 Sum_probs=239.1
Q ss_pred CCCHHHHhhhhhhh----cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGL----EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 220 ~p~~~Q~~ai~~il----~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
++.+||.-.+.++. .+-+.|++.++|.|||.+ +++.|..|.+.+. .+ .-|||||...| ..|.+++.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-------~g-pHLVVvPsSTl-eNWlrEf~ 468 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-------PG-PHLVVVPSSTL-ENWLREFA 468 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC-------CC-CcEEEecchhH-HHHHHHHH
Confidence 48899999988775 455779999999999988 5556666665542 12 24999998666 66899999
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHHHh----cCCcEEEechhhHHHHH-hcCCcCCCceeEEEEccchhhhhCCchHHHH
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQLE----KGCNILVATMGRLKDIL-DRGRISLASVRFVVLDEADRMLDMGFLGDIQ 370 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~~~----~~~~IlV~Tp~~L~~~l-~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~ 370 (693)
+|+. .+++..+||........+... ...+|+++|+.....-- ++..+.-.+++++|+||+|.+.++... .+.
T Consensus 469 kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~Se-Ry~ 545 (941)
T KOG0389|consen 469 KWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSE-RYK 545 (941)
T ss_pred HhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchH-HHH
Confidence 9984 588888998765444333321 26899999998775211 112234567899999999999877633 233
Q ss_pred HHhccCCCCCCCCcceEEeeccC-chhHHhhhhhh-------hhhchhhhHHHHhhcccc--------------------
Q psy1604 371 HVMQHSTMPDVANRQTLMFSATF-PETIQKKGCNI-------LVATMGRLKDILDRGRIS-------------------- 422 (693)
Q Consensus 371 ~i~~~~~~~~~~~~q~lllSAT~-~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~-------------------- 422 (693)
.++.. +....+++|+|+ .+.+..+...+ +......+..++....-.
T Consensus 546 ~LM~I------~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~i 619 (941)
T KOG0389|consen 546 HLMSI------NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTI 619 (941)
T ss_pred Hhccc------cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHh
Confidence 33332 256788999996 33444433221 111122222222221111
Q ss_pred --------------------ccceeEEEechhhhhhhcCcccchhHHhhcccCCcccc--ccc--eeec---ccCchhh-
Q psy1604 423 --------------------LASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVAN--RQT--LMFS---ATFPETI- 474 (693)
Q Consensus 423 --------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~---~t~~~~l- 474 (693)
...++++.+.+....++..+.. .+....-....+ ... ++.. +....-+
T Consensus 620 m~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~----~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~ 695 (941)
T KOG0389|consen 620 MKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIE----LYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLF 695 (941)
T ss_pred hhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHH----HHhhhccccccccccccchHHHHHHHHhcChhHH
Confidence 1111111111111111111000 000000000000 000 0000 0000000
Q ss_pred hcceEEE----------Eeecccccccc-------------eeE---EE----------EEccchhHHHHHHHHHhc--c
Q psy1604 475 QKNYIFI----------AVGIIGGASTD-------------VVQ---TI----------LEVPKQQKKKKLLELLRE--K 516 (693)
Q Consensus 475 ~~~~~~~----------~~~~~~~~~~~-------------~~~---~~----------~~~~~~~k~~~L~~~l~~--~ 516 (693)
+..|-.. ........+.. +.+ .+ ...-...|...|..+|.. .
T Consensus 696 R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~ 775 (941)
T KOG0389|consen 696 RSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKK 775 (941)
T ss_pred HHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhh
Confidence 0000000 00000000000 000 00 001124566777777765 4
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCC--CcEEEEeCcccccCCCCCCCEEEEcC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKK--MKVLVATAVASRGLDIKGIRHVINYD 594 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~--~~ILVaT~v~~~GiDip~v~~VI~~d 594 (693)
.+.++|||.......+.|...|..+++....+.|...-.+|+.+++.|...+ .-.|++|.+.+-|||+..+++||.||
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD 855 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHD 855 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEee
Confidence 5689999999999999999999999999999999999999999999998654 34689999999999999999999999
Q ss_pred CCCChhhhhhhhcccccCCCcceEEE--EeCCCCchHHHHHHHHHHHHcCCCchhHHhc
Q psy1604 595 LPQEIDEYVHRIGRTGRVGNKGRATS--FYDPDQDGAIAKDLVRILEQAGQPVPEFLKF 651 (693)
Q Consensus 595 ~p~s~~~y~Qr~GRagR~G~~G~~~~--~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~ 651 (693)
...+|-.-.|.-.||+|.||...+.+ +++. ..+...+.++. +.+..+...+.+
T Consensus 856 ~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk---~TIEE~I~~lA-~~KL~Le~~lt~ 910 (941)
T KOG0389|consen 856 IDFNPYDDKQAEDRCHRVGQTKPVTVYRLITK---STIEEGILRLA-KTKLALEADLTE 910 (941)
T ss_pred cCCCCcccchhHHHHHhhCCcceeEEEEEEec---CcHHHHHHHHH-HHhhhhhhhhcc
Confidence 99999999999999999998766554 4542 33444444443 333334444433
No 118
>KOG0392|consensus
Probab=99.84 E-value=2.2e-20 Score=208.00 Aligned_cols=388 Identities=14% Similarity=0.203 Sum_probs=229.3
Q ss_pred CCCHHHHhhhhhhh----cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGL----EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 220 ~p~~~Q~~ai~~il----~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
.++.||++.+.++. -+-+-|+|..+|.|||++.+-.+.........+. ........||+||. .|+-.|..++.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~--~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSES--SEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccc--hhhccCCeEEECCc-hhhhHHHHHHH
Confidence 47899999998775 2347899999999999986655444444432111 11233447999996 89999999999
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhcc
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQH 375 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~ 375 (693)
+|... +++..+.|........+.--++++|+|++|+.+.+.+.. +.-.++.|+|+||-|-|.+. ...+.+..+.
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkq 1125 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQ 1125 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHH
Confidence 99866 777777776655544444455689999999999765442 12246789999999988533 3334444333
Q ss_pred CCCCCCCCcceEEeeccC-chhHHhhhhhh---h---hhchhhhHHHHhhcccccccee---------EEEechhhhhhh
Q psy1604 376 STMPDVANRQTLMFSATF-PETIQKKGCNI---L---VATMGRLKDILDRGRISLASVR---------FVVLDEADRMLD 439 (693)
Q Consensus 376 ~~~~~~~~~q~lllSAT~-~~~~~~~~~~~---~---~~~~~~l~~~l~~~~~~~~~~~---------~~~~d~~~~~~~ 439 (693)
+. ..+.+.+|+|+ .+.+..+...| + +++...+..........-.+.+ .+.++..|+..
T Consensus 1126 L~-----a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqV- 1199 (1549)
T KOG0392|consen 1126 LR-----ANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQV- 1199 (1549)
T ss_pred Hh-----hcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHH-
Confidence 22 45678999997 34444433332 2 2222222221111110000000 00111111110
Q ss_pred cCcccchhHHhhcccCCccccccceeecccCch-------------------------------------hh------hc
Q psy1604 440 MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPE-------------------------------------TI------QK 476 (693)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~-------------------------------------~l------~~ 476 (693)
..-....++...+.+++..-.-.+.-++.+ .+ ..
T Consensus 1200 ---LPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1200 ---LPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred ---HHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcC
Confidence 000011111111111111100000000000 00 00
Q ss_pred ceEEEEeecc---ccccccee---EEEEEccchhHHHHHHHHHhcc----------------CCCcEEEEecChHhHHHH
Q psy1604 477 NYIFIAVGII---GGASTDVV---QTILEVPKQQKKKKLLELLREK----------------DEDGVIVFVSTIRNADFI 534 (693)
Q Consensus 477 ~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~k~~~L~~~l~~~----------------~~~kvLVF~~s~~~a~~l 534 (693)
.+..+..... ........ ..+..+....|+..|.++|.+. ..+++||||+-+..++.+
T Consensus 1277 HpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlV 1356 (1549)
T KOG0392|consen 1277 HPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLV 1356 (1549)
T ss_pred CcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHH
Confidence 0000000000 00000000 0011123356788888888651 246899999999999999
Q ss_pred HHHHhhCC---CceEEecCCCCHHHHHHHHHHHhcC-CCcEE-EEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhccc
Q psy1604 535 ACYLCETE---IATTSIHGSRLQSQREQAIHDFKTK-KMKVL-VATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRT 609 (693)
Q Consensus 535 ~~~L~~~~---~~v~~lhg~~~~~~R~~~~~~F~~g-~~~IL-VaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRa 609 (693)
.+-|-+.. +....+.|..++.+|.++.++|+++ .+++| ++|.+.+-|+|+.+++.||+++-.|||..-+|.+.||
T Consensus 1357 ekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1357 EKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred HHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 88776543 3345789999999999999999998 57765 7789999999999999999999999999999999999
Q ss_pred ccCCCcceEE--EEeCCC
Q psy1604 610 GRVGNKGRAT--SFYDPD 625 (693)
Q Consensus 610 gR~G~~G~~~--~~~~~~ 625 (693)
+|.||+..+- -+++..
T Consensus 1437 HRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1437 HRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred HhhcCceeeeeeeehhcc
Confidence 9999987654 445543
No 119
>KOG0924|consensus
Probab=99.84 E-value=3e-20 Score=195.84 Aligned_cols=305 Identities=18% Similarity=0.212 Sum_probs=196.2
Q ss_pred CCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh-c
Q psy1604 221 PTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA-Y 299 (693)
Q Consensus 221 p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~-~ 299 (693)
....+.+.+..+..++-+++.++||||||.+..- .|+..+ +.....+-+..|.|.-|..+++.+..-. .
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~Q----yL~edG------Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQ----YLYEDG------YADNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHH----HHHhcc------cccCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 3445556666677788999999999999997433 333332 1334467888999999998887776543 1
Q ss_pred CCCeeE--EEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCC
Q psy1604 300 SSVLKI--CLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHST 377 (693)
Q Consensus 300 ~~~l~~--~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~ 377 (693)
..+-.+ .+.+.+. ......|-+.|-|.|++-.-... .|.++++||+|||| ++....++..-+.+..
T Consensus 427 ~lG~~VGYsIRFEdv--------T~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAH---ERslNtDilfGllk~~ 494 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDV--------TSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAH---ERSLNTDILFGLLKKV 494 (1042)
T ss_pred ccccccceEEEeeec--------CCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhh---hcccchHHHHHHHHHH
Confidence 112111 1112111 12235688999999987443222 57899999999999 4444444333222222
Q ss_pred CCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCc
Q psy1604 378 MPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPD 457 (693)
Q Consensus 378 ~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (693)
+..+.+.++|.+|||+... ++...|- .. ..+.
T Consensus 495 larRrdlKliVtSATm~a~--kf~nfFg-n~----------p~f~----------------------------------- 526 (1042)
T KOG0924|consen 495 LARRRDLKLIVTSATMDAQ--KFSNFFG-NC----------PQFT----------------------------------- 526 (1042)
T ss_pred HHhhccceEEEeeccccHH--HHHHHhC-CC----------ceee-----------------------------------
Confidence 3333588999999998532 2222220 00 0000
Q ss_pred cccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHH-HHH---hccCCCcEEEEecChHhHHH
Q psy1604 458 VANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLL-ELL---REKDEDGVIVFVSTIRNADF 533 (693)
Q Consensus 458 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~-~~l---~~~~~~kvLVF~~s~~~a~~ 533 (693)
.......+.-.+...+.++-++..+ +.+ .....+.+|||....+.++-
T Consensus 527 ----------------------------IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~ 578 (1042)
T KOG0924|consen 527 ----------------------------IPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIEC 578 (1042)
T ss_pred ----------------------------ecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhH
Confidence 0001111111111222222222222 222 22456789999999887665
Q ss_pred HHHHHh----hC------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCC--------
Q psy1604 534 IACYLC----ET------EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDL-------- 595 (693)
Q Consensus 534 l~~~L~----~~------~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~-------- 595 (693)
.+..++ +. ++.+..+++.|+..-+.+++..-..|..+++|||++++..|.||++.+||..++
T Consensus 579 t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~ 658 (1042)
T KOG0924|consen 579 TCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNP 658 (1042)
T ss_pred HHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccc
Confidence 554443 22 577899999999999999999889999999999999999999999999997543
Q ss_pred ----------CCChhhhhhhhcccccCCCcceEEEEeCC
Q psy1604 596 ----------PQEIDEYVHRIGRTGRVGNKGRATSFYDP 624 (693)
Q Consensus 596 ----------p~s~~~y~Qr~GRagR~G~~G~~~~~~~~ 624 (693)
|-|.+.--||.|||||. .+|.|+-+|+.
T Consensus 659 ~~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe 696 (1042)
T KOG0924|consen 659 RIGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTE 696 (1042)
T ss_pred ccccceeEEEechhccchhhccccCCC-CCcceeeehhh
Confidence 55778888999999999 59999999985
No 120
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.84 E-value=3.7e-19 Score=202.64 Aligned_cols=342 Identities=16% Similarity=0.156 Sum_probs=184.0
Q ss_pred CCHHHHhhhhhhhc----------CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHH
Q psy1604 221 PTPIQKYAIPAGLE----------GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQI 290 (693)
Q Consensus 221 p~~~Q~~ai~~il~----------g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 290 (693)
++++|.+|+..+.. .+..+++.+||||||++++.. ...++.. ...+++|||+|+.+|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~l-a~~l~~~--------~~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFA-ARKALEL--------LKNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHH-HHHHHhh--------cCCCeEEEEECcHHHHHHH
Confidence 78899999987642 257999999999999985444 3444432 2346899999999999999
Q ss_pred HHHHHHHhcCCCeeEEEEeCCCChHHHHHHHh-cCCcEEEechhhHHHHHhcC--CcCCCce-eEEEEccchhhhhCCch
Q psy1604 291 HEVACKYAYSSVLKICLHYGGASSMHFNRQLE-KGCNILVATMGRLKDILDRG--RISLASV-RFVVLDEADRMLDMGFL 366 (693)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~-~~~~IlV~Tp~~L~~~l~~~--~~~l~~~-~~lVlDEah~l~~~~~~ 366 (693)
.+.+.++..... ....+.......+. ....|+|+|.+.|...+... ....... -+||+||||+.....+.
T Consensus 310 ~~~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~ 383 (667)
T TIGR00348 310 MKEFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA 383 (667)
T ss_pred HHHHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH
Confidence 999999863211 11122233333333 24689999999998644321 1111111 28999999987533333
Q ss_pred HHHHHHhccCCCCCCCCcceEEeeccCchhHHhhh-hhhh-----hhchhhhHHHHhhccccccceeEEEechhhhhhhc
Q psy1604 367 GDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKG-CNIL-----VATMGRLKDILDRGRISLASVRFVVLDEADRMLDM 440 (693)
Q Consensus 367 ~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~-~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~ 440 (693)
..+...+ ++..+++|||||-....... ..+. ......+.+.+....+.. +.+........+...
T Consensus 384 ~~l~~~~--------p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~--i~Y~~~~~~~~~~~~ 453 (667)
T TIGR00348 384 KNLKKAL--------KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVK--IDYEDRLPEDHLDRK 453 (667)
T ss_pred HHHHhhC--------CCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeee--EEEEecchhhccChH
Confidence 2332222 25689999999843211100 0000 001112222222221111 111100000000000
Q ss_pred CcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHH----HHHHHHHhc-
Q psy1604 441 GFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKK----KKLLELLRE- 515 (693)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~----~~L~~~l~~- 515 (693)
.+.......... .+.. ........+...+.. ...+ ....... ..+.+.+..
T Consensus 454 ~l~~~~~~~~~~-----~~~~----~~~~~~~~l~~~~~~-------------~~~~--~~~~~~~~~ia~~i~~h~~~~ 509 (667)
T TIGR00348 454 KLDAFFDEIFEL-----LPER----IREITKESLKEKLQK-------------TKKI--LFNEDRLESIAKDIAEHYAKF 509 (667)
T ss_pred HHHHHHHHHHHh-----hhcc----ccHHHHHHHHHHHHH-------------HHhh--hcChHHHHHHHHHHHHHHHHh
Confidence 000000000000 0000 000000000000000 0000 0111111 222222221
Q ss_pred --cCCCcEEEEecChHhHHHHHHHHhhC-----CCceEEecCCCCHH---------------------HHHHHHHHHhc-
Q psy1604 516 --KDEDGVIVFVSTIRNADFIACYLCET-----EIATTSIHGSRLQS---------------------QREQAIHDFKT- 566 (693)
Q Consensus 516 --~~~~kvLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~~~~---------------------~R~~~~~~F~~- 566 (693)
....+++|||.++.+|..+.+.|.+. +.....+++..+.. ....++++|++
T Consensus 510 ~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~ 589 (667)
T TIGR00348 510 KELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE 589 (667)
T ss_pred hhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC
Confidence 23588999999999999999888654 23455566543322 22478889976
Q ss_pred CCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccC
Q psy1604 567 KKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRV 612 (693)
Q Consensus 567 g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 612 (693)
+..+|||.++++.+|.|.|.+++++...+-++ ..++|.+||+.|.
T Consensus 590 ~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 590 ENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred CCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 67899999999999999999999888775555 4689999999994
No 121
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=9.3e-19 Score=191.44 Aligned_cols=389 Identities=17% Similarity=0.183 Sum_probs=232.6
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.|++.|.-+.-.++.|+ ++.+.||.|||+++.+|++...+.. ..+.|++|+.-||.|-++++..+..
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G-----------~~VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQG-----------RRVHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcC-----------CCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 79999999998888774 7899999999999999988776543 3689999999999999999999999
Q ss_pred CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcCC------cCCCceeEEEEccchhhhhC-C-------
Q psy1604 300 SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRGR------ISLASVRFVVLDEADRMLDM-G------- 364 (693)
Q Consensus 300 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~l~~~-~------- 364 (693)
..++++.++.++.+....+..+ .|||+++|...| .++|+.+. .....+.+.||||+|.++-. .
T Consensus 145 ~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiIS 222 (764)
T PRK12326 145 ALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLA 222 (764)
T ss_pred hcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeee
Confidence 9999999998887765444333 689999999876 44554332 12356889999999987621 1
Q ss_pred -------chHHHHHHhccCCC----CCCCCcceEEeeccCchhHHhhhh--h-hhhh----chhhhHHHHhhccccccce
Q psy1604 365 -------FLGDIQHVMQHSTM----PDVANRQTLMFSATFPETIQKKGC--N-ILVA----TMGRLKDILDRGRISLASV 426 (693)
Q Consensus 365 -------~~~~i~~i~~~~~~----~~~~~~q~lllSAT~~~~~~~~~~--~-~~~~----~~~~l~~~l~~~~~~~~~~ 426 (693)
.+..+..+...+.. .-....+.+.+|..=-..+..... . +-.. ....+...+....+...+.
T Consensus 223 g~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~ 302 (764)
T PRK12326 223 GSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDV 302 (764)
T ss_pred CCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCC
Confidence 12222222222110 001122333333321111111100 0 0000 0111222223333334444
Q ss_pred eEEEechhhhhh---------hcCcccchhHHhhcccCCccccccceeecccCch--------------------hhhcc
Q psy1604 427 RFVVLDEADRML---------DMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPE--------------------TIQKN 477 (693)
Q Consensus 427 ~~~~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~--------------------~l~~~ 477 (693)
.|++.+..-.+. ...+..-+...+.....-.........-+.|+.. .+.+-
T Consensus 303 dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~i 382 (764)
T PRK12326 303 HYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQF 382 (764)
T ss_pred cEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHH
Confidence 554433211111 1112211222211111111111111111111111 11111
Q ss_pred eEEEEeeccccccccee---EEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCC
Q psy1604 478 YIFIAVGIIGGASTDVV---QTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSR 552 (693)
Q Consensus 478 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~ 552 (693)
|- ..+-......+... ....+.....|...+++.+.. ..+.++||.+.+....+.|+..|.+.+++..++++..
T Consensus 383 Y~-l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~ 461 (764)
T PRK12326 383 YD-LGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKN 461 (764)
T ss_pred hC-CcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCc
Confidence 11 11111111111111 112334456777777776654 5788999999999999999999999999999999874
Q ss_pred CHHHHHHHHHHHhcCC-CcEEEEeCcccccCCCCC---------------CCEEEEcCCCCChhhhhhhhcccccCCCcc
Q psy1604 553 LQSQREQAIHDFKTKK-MKVLVATAVASRGLDIKG---------------IRHVINYDLPQEIDEYVHRIGRTGRVGNKG 616 (693)
Q Consensus 553 ~~~~R~~~~~~F~~g~-~~ILVaT~v~~~GiDip~---------------v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G 616 (693)
...+ .+++. +.|+ -.|.|||++++||.||.- ==|||....+.|..--.|-.||+||.|.+|
T Consensus 462 ~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpG 538 (764)
T PRK12326 462 DAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPG 538 (764)
T ss_pred hHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCC
Confidence 4333 23332 3454 358899999999999952 237999999999999999999999999999
Q ss_pred eEEEEeCCCCc
Q psy1604 617 RATSFYDPDQD 627 (693)
Q Consensus 617 ~~~~~~~~~~d 627 (693)
.+..|++.+++
T Consensus 539 ss~f~lSleDd 549 (764)
T PRK12326 539 SSVFFVSLEDD 549 (764)
T ss_pred ceeEEEEcchh
Confidence 99999986653
No 122
>KOG0926|consensus
Probab=99.83 E-value=1.4e-19 Score=193.80 Aligned_cols=312 Identities=18% Similarity=0.209 Sum_probs=195.0
Q ss_pred hhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH-hc-CCCee
Q psy1604 227 YAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY-AY-SSVLK 304 (693)
Q Consensus 227 ~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~-~~-~~~l~ 304 (693)
+++.+|..+--+|||++||||||.+.--.+++.=+..... .....+=|.-|+|.-|..+++....- .. ...+.
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~-----~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVs 337 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQS-----SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVS 337 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccC-----CCCCeeeecCchHHHHHHHHHHHHHHhccCcccee
Confidence 4555666677899999999999997444443332222211 12336778899998777666554332 22 12233
Q ss_pred EEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHH-----HhccC---
Q psy1604 305 ICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQH-----VMQHS--- 376 (693)
Q Consensus 305 ~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~-----i~~~~--- 376 (693)
..+.+.+.. .....|.++|.|.|++-+.+.. .|..++.||||||| +++.+.++.- |....
T Consensus 338 YqIRfd~ti--------~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAH---ERSvnTDILiGmLSRiV~LR~k~ 405 (1172)
T KOG0926|consen 338 YQIRFDGTI--------GEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAH---ERSVNTDILIGMLSRIVPLRQKY 405 (1172)
T ss_pred EEEEecccc--------CCCceeEEecchHHHHHHHHhH-hhhhceeEEechhh---hccchHHHHHHHHHHHHHHHHHH
Confidence 444444432 3356899999999999888755 48899999999999 4554444321 11100
Q ss_pred C--CCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhccc
Q psy1604 377 T--MPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHST 454 (693)
Q Consensus 377 ~--~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 454 (693)
. .......++|+||||+.-.-+.....+ ..-.+..+.+|
T Consensus 406 ~ke~~~~kpLKLIIMSATLRVsDFtenk~L-----------------Fpi~pPlikVd---------------------- 446 (1172)
T KOG0926|consen 406 YKEQCQIKPLKLIIMSATLRVSDFTENKRL-----------------FPIPPPLIKVD---------------------- 446 (1172)
T ss_pred hhhhcccCceeEEEEeeeEEecccccCcee-----------------cCCCCceeeee----------------------
Confidence 0 011125678999999742211110110 00000000000
Q ss_pred CCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHH
Q psy1604 455 MPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFI 534 (693)
Q Consensus 455 ~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l 534 (693)
.++.++.+.... .+..+. -.+-......+.+..+.+.+|||+...++++.|
T Consensus 447 -------------------ARQfPVsIHF~k--rT~~DY--------i~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL 497 (1172)
T KOG0926|consen 447 -------------------ARQFPVSIHFNK--RTPDDY--------IAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQL 497 (1172)
T ss_pred -------------------cccCceEEEecc--CCCchH--------HHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHH
Confidence 011222111100 000000 012334455566667889999999999999999
Q ss_pred HHHHhhCC---C--------------------------------------------------------------------
Q psy1604 535 ACYLCETE---I-------------------------------------------------------------------- 543 (693)
Q Consensus 535 ~~~L~~~~---~-------------------------------------------------------------------- 543 (693)
++.|++.. +
T Consensus 498 ~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~ 577 (1172)
T KOG0926|consen 498 CEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGS 577 (1172)
T ss_pred HHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhcccccccc
Confidence 99886530 0
Q ss_pred ----------------------------ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCC
Q psy1604 544 ----------------------------ATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDL 595 (693)
Q Consensus 544 ----------------------------~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~ 595 (693)
-+..+++-++.+++.++++....|..=++|||++++..|.||++.+||..+.
T Consensus 578 ~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr 657 (1172)
T KOG0926|consen 578 VNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGR 657 (1172)
T ss_pred ccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccc
Confidence 0667788888999999999999999999999999999999999999997543
Q ss_pred --------CC----------ChhhhhhhhcccccCCCcceEEEEeCC
Q psy1604 596 --------PQ----------EIDEYVHRIGRTGRVGNKGRATSFYDP 624 (693)
Q Consensus 596 --------p~----------s~~~y~Qr~GRagR~G~~G~~~~~~~~ 624 (693)
-. |.++--||+|||||.| +|+||-+|..
T Consensus 658 ~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 658 VKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred hhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 22 4455569999999995 9999999874
No 123
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.82 E-value=4.1e-18 Score=193.38 Aligned_cols=146 Identities=22% Similarity=0.299 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccc
Q psy1604 503 QQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASR 580 (693)
Q Consensus 503 ~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~ 580 (693)
..++..|++.+.. ..+.++||||+++..++.+++.|...++++..+|+++++.+|..+++.|+.|.+.|||||+++++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 3456667766655 45678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCC-----CCChhhhhhhhcccccCCCcceEEEEeCCC--------CchHHHHHHHHHHHHcCCCchh
Q psy1604 581 GLDIKGIRHVINYDL-----PQEIDEYVHRIGRTGRVGNKGRATSFYDPD--------QDGAIAKDLVRILEQAGQPVPE 647 (693)
Q Consensus 581 GiDip~v~~VI~~d~-----p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~--------~d~~~~~~l~~~l~~~~~~vp~ 647 (693)
|+|+|++++||++|. |.+..+|+||+||+||. ..|.|++|++.. .+....+++...++.+...+|.
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 999999999999885 78999999999999996 799999999842 2445556666667777666665
Q ss_pred HH
Q psy1604 648 FL 649 (693)
Q Consensus 648 ~l 649 (693)
-.
T Consensus 588 ~~ 589 (652)
T PRK05298 588 TI 589 (652)
T ss_pred hH
Confidence 43
No 124
>KOG0949|consensus
Probab=99.82 E-value=1.9e-19 Score=196.72 Aligned_cols=158 Identities=20% Similarity=0.153 Sum_probs=113.9
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh-
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA- 298 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~- 298 (693)
.|-.||.+.+..+-.+..++++|||.+|||++--..+-..+..... .-+|+++||++|+.|+...+....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~---------~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDS---------DVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCC---------CEEEEecchHHHhhhhhHHHHHhhc
Confidence 5789999999999999999999999999999855555444444333 358999999999999987775544
Q ss_pred cCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC---CcCCCceeEEEEccchhhhhCCchHHHHHHhcc
Q psy1604 299 YSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG---RISLASVRFVVLDEADRMLDMGFLGDIQHVMQH 375 (693)
Q Consensus 299 ~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~---~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~ 375 (693)
..+..+...+.|....+.+.. .-+|+|+|+-|+.+..+|-.. ....+.++++|+||+|.+....-.-..+.++..
T Consensus 582 ~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l 659 (1330)
T KOG0949|consen 582 TKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL 659 (1330)
T ss_pred cCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh
Confidence 344444455555554443332 126999999999998888662 345688999999999998755433333444443
Q ss_pred CCCCCCCCcceEEeeccCc
Q psy1604 376 STMPDVANRQTLMFSATFP 394 (693)
Q Consensus 376 ~~~~~~~~~q~lllSAT~~ 394 (693)
.+ -.++.+|||+.
T Consensus 660 i~------CP~L~LSATig 672 (1330)
T KOG0949|consen 660 IP------CPFLVLSATIG 672 (1330)
T ss_pred cC------CCeeEEecccC
Confidence 33 34799999973
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.4e-18 Score=194.62 Aligned_cols=390 Identities=16% Similarity=0.168 Sum_probs=229.8
Q ss_pred CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 219 TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
..|+++|.-.--.+..| -|+.+.||+|||+++.+|++-..+. +..|.|++|+.-||.|-++++..+.
T Consensus 81 m~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~-----------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS-----------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CCcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 47889998776666555 5889999999999999999866644 3468999999999999999999999
Q ss_pred cCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcCC------cCCCceeEEEEccchhhh-hCC------
Q psy1604 299 YSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRGR------ISLASVRFVVLDEADRML-DMG------ 364 (693)
Q Consensus 299 ~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~l~-~~~------ 364 (693)
...++++.++.++.+....+..+ .+||+++|...| .++|+.+. .....+.++||||+|.++ |..
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLII 225 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLII 225 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceee
Confidence 99999999998877766544444 489999999887 45554332 123678999999999876 211
Q ss_pred ---------chHHHHHHhccCC---------------CCCCCCcceEEeeccCchhHHhhhh--------hhh-----hh
Q psy1604 365 ---------FLGDIQHVMQHST---------------MPDVANRQTLMFSATFPETIQKKGC--------NIL-----VA 407 (693)
Q Consensus 365 ---------~~~~i~~i~~~~~---------------~~~~~~~q~lllSAT~~~~~~~~~~--------~~~-----~~ 407 (693)
.+..+..+...+. +.-....+.+.+|-.=-..+..+.. ..+ ..
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~ 305 (913)
T PRK13103 226 SGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLG 305 (913)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhH
Confidence 1112222221110 0000111222222211111111100 000 00
Q ss_pred chhhhHHHHhhccccccceeEEEechhhhhhh---------cCcccchhHHhhcccCCccccccceeecccCchh-----
Q psy1604 408 TMGRLKDILDRGRISLASVRFVVLDEADRMLD---------MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPET----- 473 (693)
Q Consensus 408 ~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~----- 473 (693)
....+...+....+...+..|++.+..-.+.+ ..|..-+...+....--.........-+.|+..-
T Consensus 306 ~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (913)
T PRK13103 306 LLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYN 385 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcc
Confidence 00111222333333444555555432211111 1111111111111111111111111111111111
Q ss_pred ---------------hhcceEEEEeecccccccce---eEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHH
Q psy1604 474 ---------------IQKNYIFIAVGIIGGASTDV---VQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADF 533 (693)
Q Consensus 474 ---------------l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~ 533 (693)
+.+-|- ..+-......+.. .....+.....|...+++.+.. ..+.++||-+.|....+.
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~-l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ 464 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYG-LDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEH 464 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhC-CCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHH
Confidence 111110 0000011111101 1112344556788888877765 578899999999999999
Q ss_pred HHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCC-CcEEEEeCcccccCCCC---------------------------
Q psy1604 534 IACYLCETEIATTSIHGSRLQSQREQAIHDFKTKK-MKVLVATAVASRGLDIK--------------------------- 585 (693)
Q Consensus 534 l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~-~~ILVaT~v~~~GiDip--------------------------- 585 (693)
|+..|+..+++..+++......+-+.+- +.|+ -.|.|||++++||-||.
T Consensus 465 ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~ 541 (913)
T PRK13103 465 MSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADW 541 (913)
T ss_pred HHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999988888864433333332 3454 35889999999999994
Q ss_pred ----------CCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCc
Q psy1604 586 ----------GIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQD 627 (693)
Q Consensus 586 ----------~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d 627 (693)
+==|||-...+.|..--.|-.||+||.|.+|.+..|+..+++
T Consensus 542 ~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 542 QKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 122788888999999999999999999999999999987643
No 126
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.81 E-value=4.5e-18 Score=176.10 Aligned_cols=147 Identities=21% Similarity=0.313 Sum_probs=121.1
Q ss_pred chhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCccc
Q psy1604 502 KQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVAS 579 (693)
Q Consensus 502 ~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~ 579 (693)
....++.|+..++. ..+.++||-+-|++.|+.|.++|.+.|+++..+|++...-+|.+++++.|.|.++|||.-+.+-
T Consensus 428 ~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLR 507 (663)
T COG0556 428 TKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (663)
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhh
Confidence 34455666655554 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcCC-----CCChhhhhhhhcccccCCCcceEEEEeCCCCchHH---------HHHHHHHHHHcCCCc
Q psy1604 580 RGLDIKGIRHVINYDL-----PQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAI---------AKDLVRILEQAGQPV 645 (693)
Q Consensus 580 ~GiDip~v~~VI~~d~-----p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~---------~~~l~~~l~~~~~~v 645 (693)
+|||+|.|.+|..+|. .+|-.+++|-+|||+|. -.|+++++.+.-. ..+ .+.++..++++.-..
T Consensus 508 EGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~iT-~sM~~Ai~ET~RRR~iQ~~yN~~hgIt 585 (663)
T COG0556 508 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKIT-DSMQKAIDETERRREIQMAYNEEHGIT 585 (663)
T ss_pred ccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchhhh-HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999998884 57999999999999997 7899999987432 222 234445555555555
Q ss_pred hhHHh
Q psy1604 646 PEFLK 650 (693)
Q Consensus 646 p~~l~ 650 (693)
|.-+.
T Consensus 586 P~ti~ 590 (663)
T COG0556 586 PQTIK 590 (663)
T ss_pred chhhh
Confidence 55443
No 127
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=6e-18 Score=188.53 Aligned_cols=313 Identities=19% Similarity=0.213 Sum_probs=194.2
Q ss_pred CCCCHHHHhhhhhhhcC----CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGLEG----RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g----~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
..+++-|..++..+.+. +..++.+-||||||-+|+-.+-..| . .+..+|||+|-.+|..|+.+.|
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L-~----------~GkqvLvLVPEI~Ltpq~~~rf 265 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL-A----------QGKQVLVLVPEIALTPQLLARF 265 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH-H----------cCCEEEEEeccccchHHHHHHH
Confidence 46788999999999765 6899999999999999877666555 3 3347999999999999999999
Q ss_pred HHHhcCCCeeEEEEeCCCCh----HHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhC---C---
Q psy1604 295 CKYAYSSVLKICLHYGGASS----MHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDM---G--- 364 (693)
Q Consensus 295 ~~~~~~~~l~~~~~~gg~~~----~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~---~--- 364 (693)
+.... .++..++.+-+. +.|.+.......|+|+|-..+. ..++++.+|||||=|--.-. +
T Consensus 266 ~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prY 335 (730)
T COG1198 266 KARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRY 335 (730)
T ss_pred HHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCc
Confidence 87653 456666665553 4555656678999999988774 47899999999999943211 1
Q ss_pred chHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCccc
Q psy1604 365 FLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLG 444 (693)
Q Consensus 365 ~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 444 (693)
+..++.....+ ..+..+|+-|||+.-+....+..- .+..+.+.....
T Consensus 336 hARdvA~~Ra~-----~~~~pvvLgSATPSLES~~~~~~g--------------------~y~~~~L~~R~~-------- 382 (730)
T COG1198 336 HARDVAVLRAK-----KENAPVVLGSATPSLESYANAESG--------------------KYKLLRLTNRAG-------- 382 (730)
T ss_pred CHHHHHHHHHH-----HhCCCEEEecCCCCHHHHHhhhcC--------------------ceEEEEcccccc--------
Confidence 11122222111 236789999999865543322100 011111000000
Q ss_pred chhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc--cCCCcEE
Q psy1604 445 DIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE--KDEDGVI 522 (693)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~--~~~~kvL 522 (693)
....+.... +.+.. ....... .--..|++.++. ..+.++|
T Consensus 383 ----------~a~~p~v~i-----------------iDmr~----------e~~~~~~-~lS~~Ll~~i~~~l~~geQ~l 424 (730)
T COG1198 383 ----------RARLPRVEI-----------------IDMRK----------EPLETGR-SLSPALLEAIRKTLERGEQVL 424 (730)
T ss_pred ----------ccCCCcceE-----------------Eeccc----------cccccCc-cCCHHHHHHHHHHHhcCCeEE
Confidence 000000000 00000 0000000 001233333332 3455666
Q ss_pred EEecChHhHHH------------------------------------------------------------HHHHHhhC-
Q psy1604 523 VFVSTIRNADF------------------------------------------------------------IACYLCET- 541 (693)
Q Consensus 523 VF~~s~~~a~~------------------------------------------------------------l~~~L~~~- 541 (693)
+|.|++-.+-. +.+.|...
T Consensus 425 lflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F 504 (730)
T COG1198 425 LFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF 504 (730)
T ss_pred EEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC
Confidence 66666544322 22222221
Q ss_pred -CCceEEecCCCCHH--HHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCC------------CChhhhhhhh
Q psy1604 542 -EIATTSIHGSRLQS--QREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLP------------QEIDEYVHRI 606 (693)
Q Consensus 542 -~~~v~~lhg~~~~~--~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p------------~s~~~y~Qr~ 606 (693)
+.++..+.++.+.. .-+..++.|.+|+.+|||.|.+++.|.|+|++++|...|.. +....+.|-.
T Consensus 505 P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Qva 584 (730)
T COG1198 505 PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVA 584 (730)
T ss_pred CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHH
Confidence 34567777775543 34678999999999999999999999999999997755432 2455678999
Q ss_pred cccccCCCcceEEEEeC
Q psy1604 607 GRTGRVGNKGRATSFYD 623 (693)
Q Consensus 607 GRagR~G~~G~~~~~~~ 623 (693)
|||||.+.+|.+++=..
T Consensus 585 GRAgR~~~~G~VvIQT~ 601 (730)
T COG1198 585 GRAGRAGKPGEVVIQTY 601 (730)
T ss_pred hhhccCCCCCeEEEEeC
Confidence 99999999998887654
No 128
>KOG1000|consensus
Probab=99.80 E-value=2.4e-18 Score=175.90 Aligned_cols=374 Identities=14% Similarity=0.190 Sum_probs=215.5
Q ss_pred CCCCHHHHhhhhhhh-cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGL-EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il-~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
..+.|+|++.+...+ +|..++++.++|.|||++++ .+...+ .... ..||+||. +|--.|.+.+.+|
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl-aIA~yy-raEw----------plliVcPA-svrftWa~al~r~ 263 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQAL-AIARYY-RAEW----------PLLIVCPA-SVRFTWAKALNRF 263 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHH-HHHHHH-hhcC----------cEEEEecH-HHhHHHHHHHHHh
Confidence 356799999998777 57899999999999999854 343333 3222 37999996 6778899999999
Q ss_pred hcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCC
Q psy1604 298 AYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHST 377 (693)
Q Consensus 298 ~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~ 377 (693)
...... +.++.++...- ..+.....|.|.+++.+..+-. .+.-..+.+||+||+|++.+..-. ....++....
T Consensus 264 lps~~p-i~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sktk-r~Ka~~dllk 336 (689)
T KOG1000|consen 264 LPSIHP-IFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSKTK-RTKAATDLLK 336 (689)
T ss_pred cccccc-eEEEecccCCc---cccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccchh-hhhhhhhHHH
Confidence 754332 44444433211 1123346799999998865433 222345899999999998654321 1222221111
Q ss_pred CCCCCCcceEEeeccC----chhHHhhhhhh----hhhchhhhHHHHhhccccccceeEE---EechhhhhhhcCcccch
Q psy1604 378 MPDVANRQTLMFSATF----PETIQKKGCNI----LVATMGRLKDILDRGRISLASVRFV---VLDEADRMLDMGFLGDI 446 (693)
Q Consensus 378 ~~~~~~~q~lllSAT~----~~~~~~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~ 446 (693)
.-.++|++|+|+ |.++.....-. .....+--...++..... ....+- .+.+.+.++.. .-.
T Consensus 337 ----~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr-~~~Dykg~tnl~EL~~lL~k---~lM 408 (689)
T KOG1000|consen 337 ----VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVR-FCFDYKGCTNLEELAALLFK---RLM 408 (689)
T ss_pred ----HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccc-eeeecCCCCCHHHHHHHHHH---HHH
Confidence 245899999997 33322211100 000011111111111100 000000 01111111100 000
Q ss_pred hHHhhcccCCcccc-ccceeecccC-chhhhcceEEEEeecccccccceeEE-------EEEccchhHHHHHHHHHhc--
Q psy1604 447 QHVMQHSTMPDVAN-RQTLMFSATF-PETIQKNYIFIAVGIIGGASTDVVQT-------ILEVPKQQKKKKLLELLRE-- 515 (693)
Q Consensus 447 ~~~~~~~~~~~~~~-~~~~~~~~t~-~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~k~~~L~~~l~~-- 515 (693)
-...+...+..++. ++.+.+-..- -+....+.+..... .+..+..+. ++......|.....+.+..
T Consensus 409 IRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~---~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~ 485 (689)
T KOG1000|consen 409 IRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAAD---YTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENY 485 (689)
T ss_pred HHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhh---cchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCc
Confidence 11111122222221 1111111110 00000000000000 000000000 0111112345555555543
Q ss_pred ----cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcC-CCcE-EEEeCcccccCCCCCCCE
Q psy1604 516 ----KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTK-KMKV-LVATAVASRGLDIKGIRH 589 (693)
Q Consensus 516 ----~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g-~~~I-LVaT~v~~~GiDip~v~~ 589 (693)
....|.+||+......+.|...+.+.++....+.|..+..+|+...+.|+.. +.+| +++...++.||++...+.
T Consensus 486 ~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~ 565 (689)
T KOG1000|consen 486 FLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASV 565 (689)
T ss_pred ccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccce
Confidence 5677899999999999999999999999999999999999999999999954 3444 566678899999999999
Q ss_pred EEEcCCCCChhhhhhhhcccccCCCcceEEEEeC
Q psy1604 590 VINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYD 623 (693)
Q Consensus 590 VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~ 623 (693)
|++..++|++.-++|.-.|+.|.||+..+.+.|.
T Consensus 566 VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 566 VVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred EEEEEecCCCceEEechhhhhhccccceeeEEEE
Confidence 9999999999999999999999999887665554
No 129
>KOG0925|consensus
Probab=99.79 E-value=1.1e-18 Score=178.07 Aligned_cols=329 Identities=17% Similarity=0.200 Sum_probs=206.9
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCC
Q psy1604 196 PIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQP 275 (693)
Q Consensus 196 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~ 275 (693)
.+..|.....++...+.|++.--...+.++.+.+..+.+++-++++++||||||.+.--..+...+... .
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----------~ 92 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----------T 92 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----------c
Confidence 367788889999999999887666677778888888889999999999999999875555555544432 2
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEc
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLD 355 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlD 355 (693)
.+.+..|.|.-|.+++.....-. .+....-.|-.... .+-...+.-+-+||.++|++-.-... .+..+.+||+|
T Consensus 93 ~v~CTQprrvaamsva~RVadEM---Dv~lG~EVGysIrf--EdC~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLD 166 (699)
T KOG0925|consen 93 GVACTQPRRVAAMSVAQRVADEM---DVTLGEEVGYSIRF--EDCTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILD 166 (699)
T ss_pred ceeecCchHHHHHHHHHHHHHHh---ccccchhccccccc--cccCChhHHHHHhcchHHHHHHhhCc-ccccccEEEec
Confidence 47889999998888876654432 22221111111100 00000011122567777766444333 47889999999
Q ss_pred cchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhh
Q psy1604 356 EADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 435 (693)
Q Consensus 356 Eah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~ 435 (693)
||| ++....++..-+.+.....+++.+++.+|||+-..-.. ..| .
T Consensus 167 eah---ERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq--~yf------------~------------------ 211 (699)
T KOG0925|consen 167 EAH---ERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQ--RYF------------G------------------ 211 (699)
T ss_pred hhh---hhhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHH--HHh------------C------------------
Confidence 999 33333333221111112223588999999997432111 000 0
Q ss_pred hhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccch----hHHHHHHH
Q psy1604 436 RMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQ----QKKKKLLE 511 (693)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~k~~~L~~ 511 (693)
... + -.+.. ...+...+...... .-+..+++
T Consensus 212 ----------------n~P------------------------l----l~vpg-~~PvEi~Yt~e~erDylEaairtV~q 246 (699)
T KOG0925|consen 212 ----------------NAP------------------------L----LAVPG-THPVEIFYTPEPERDYLEAAIRTVLQ 246 (699)
T ss_pred ----------------CCC------------------------e----eecCC-CCceEEEecCCCChhHHHHHHHHHHH
Confidence 000 0 00000 00111111111222 23344555
Q ss_pred HHhccCCCcEEEEecChHhHHHHHHHHhhC---------CCceEEecCCCCHHHHHHHHHHHhc---C--CCcEEEEeCc
Q psy1604 512 LLREKDEDGVIVFVSTIRNADFIACYLCET---------EIATTSIHGSRLQSQREQAIHDFKT---K--KMKVLVATAV 577 (693)
Q Consensus 512 ~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~---------~~~v~~lhg~~~~~~R~~~~~~F~~---g--~~~ILVaT~v 577 (693)
+.....++.+|||....++++..++.+... ...+..+| +.++..+++-... | ..+|+|+|++
T Consensus 247 ih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstni 322 (699)
T KOG0925|consen 247 IHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNI 322 (699)
T ss_pred HHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecc
Confidence 555567889999999999999888887632 35677888 4444444443322 2 3689999999
Q ss_pred ccccCCCCCCCEEEEcCC------------------CCChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 578 ASRGLDIKGIRHVINYDL------------------PQEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 578 ~~~GiDip~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
++..+.|+++.+||.-++ |-|..+-.||.||+||. ++|+|+.+|+.+
T Consensus 323 aetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 323 AETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred hheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999999999999997443 55788889999999998 899999999853
No 130
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.78 E-value=7.3e-18 Score=164.14 Aligned_cols=177 Identities=41% Similarity=0.500 Sum_probs=139.7
Q ss_pred hCCCCCCCHHHHhhhhhhhcC-CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 215 KSNYTKPTPIQKYAIPAGLEG-RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 215 ~~g~~~p~~~Q~~ai~~il~g-~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
..++..|+++|.+++..+... +++++.++||+|||.+++.++++.+.... ..++||++|++.++.|+...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~ 73 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEE 73 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHH
Confidence 346789999999999999988 99999999999999998888888776542 23699999999999999999
Q ss_pred HHHHhcCCCeeEEEEeCCCChHHHHHHHhcCC-cEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHH
Q psy1604 294 ACKYAYSSVLKICLHYGGASSMHFNRQLEKGC-NILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHV 372 (693)
Q Consensus 294 ~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~-~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i 372 (693)
+.++............++.........+.... +|+++|++.+.+.+.........++++|+||+|.+....+...+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 74 LKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 99887655434444555554333444444555 99999999999999887667788999999999999865677777777
Q ss_pred hccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 373 MQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 373 ~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
+... ....+++++|||+++........+
T Consensus 154 ~~~~----~~~~~~v~~saT~~~~~~~~~~~~ 181 (201)
T smart00487 154 LKLL----PKNVQLLLLSATPPEEIENLLELF 181 (201)
T ss_pred HHhC----CccceEEEEecCCchhHHHHHHHh
Confidence 7654 247789999999987766654443
No 131
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.78 E-value=7e-17 Score=187.16 Aligned_cols=121 Identities=15% Similarity=0.146 Sum_probs=86.7
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCC--CCEEEEc
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKG--IRHVINY 593 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~--v~~VI~~ 593 (693)
..++++||+++|.+..+.+++.|....+++ ...|... .+.+++++|+++...||++|+.+.+|+|+|+ ...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 457899999999999999999997665544 3334221 3566899999988899999999999999973 5556766
Q ss_pred CCCC------------------------------ChhhhhhhhcccccCCCcceEEEEeCCC-CchHHHHHHHHHHH
Q psy1604 594 DLPQ------------------------------EIDEYVHRIGRTGRVGNKGRATSFYDPD-QDGAIAKDLVRILE 639 (693)
Q Consensus 594 d~p~------------------------------s~~~y~Qr~GRagR~G~~G~~~~~~~~~-~d~~~~~~l~~~l~ 639 (693)
.+|. -...+.|.+||.-|...+--+++++++. ....+-+.+.+.|.
T Consensus 722 kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 722 RLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCC
Confidence 6652 1233559999999986655566666644 23345555555554
No 132
>KOG1123|consensus
Probab=99.76 E-value=2.1e-18 Score=176.37 Aligned_cols=320 Identities=18% Similarity=0.182 Sum_probs=204.2
Q ss_pred CCCCCHHHHhhhhhhhcC---CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 218 YTKPTPIQKYAIPAGLEG---RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 218 ~~~p~~~Q~~ai~~il~g---~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
-..++|||..++..+.-+ +.-+++.|.|+|||++- +.+...+ +.++||||.+-..+.||...+
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVG-vTAa~ti-------------kK~clvLcts~VSVeQWkqQf 365 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG-VTAACTI-------------KKSCLVLCTSAVSVEQWKQQF 365 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceee-eeeeeee-------------cccEEEEecCccCHHHHHHHH
Confidence 347899999999998733 68899999999999973 3333222 346999999999999999999
Q ss_pred HHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC--------CcCCCceeEEEEccchhhhhCCch
Q psy1604 295 CKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG--------RISLASVRFVVLDEADRMLDMGFL 366 (693)
Q Consensus 295 ~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~--------~~~l~~~~~lVlDEah~l~~~~~~ 366 (693)
..|.....-.++..+.+.. .....++.|+|+|+.++..--++. .+.-..+.++|+||+|.+...-|.
T Consensus 366 k~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFR 440 (776)
T KOG1123|consen 366 KQWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFR 440 (776)
T ss_pred HhhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHH
Confidence 9998655555555544332 223457899999998875432221 123457899999999998776666
Q ss_pred HHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhh-hhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccc
Q psy1604 367 GDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCN-ILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGD 445 (693)
Q Consensus 367 ~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 445 (693)
..+..+..+.. ++++||+-.+-.+.... |+++..---..|++..
T Consensus 441 RVlsiv~aHcK---------LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~-------------------------- 485 (776)
T KOG1123|consen 441 RVLSIVQAHCK---------LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQ-------------------------- 485 (776)
T ss_pred HHHHHHHHHhh---------ccceeEEeeccccccccceeecchhhhccHHHHH--------------------------
Confidence 66665555533 78999985443332221 1111111111111110
Q ss_pred hhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc--cCCCcEEE
Q psy1604 446 IQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE--KDEDGVIV 523 (693)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLV 523 (693)
+.. ...+.+..-.--.+...+...|+.... -...+.++-...|+....-+++. ..+.|+||
T Consensus 486 -----~kG---hIA~VqCaEVWCpMt~eFy~eYL~~~t---------~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIV 548 (776)
T KOG1123|consen 486 -----KKG---HIAKVQCAEVWCPMTPEFYREYLRENT---------RKRMLLYVMNPNKFRACQFLIKFHERRGDKIIV 548 (776)
T ss_pred -----hCC---ceeEEeeeeeecCCCHHHHHHHHhhhh---------hhhheeeecCcchhHHHHHHHHHHHhcCCeEEE
Confidence 000 000000000011111222223322110 11222333344455444333332 47789999
Q ss_pred EecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhc-CCCcEEEEeCcccccCCCCCCCEEEEcCCC-CChhh
Q psy1604 524 FVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKT-KKMKVLVATAVASRGLDIKGIRHVINYDLP-QEIDE 601 (693)
Q Consensus 524 F~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~-g~~~ILVaT~v~~~GiDip~v~~VI~~d~p-~s~~~ 601 (693)
|....-....++-.|.+ -.++|..++.+|.++++.|+- .+++-++-+.++...||+|..+++|+...- .|..+
T Consensus 549 FsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQ 623 (776)
T KOG1123|consen 549 FSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQ 623 (776)
T ss_pred EeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHH
Confidence 99887777777666643 357899999999999999994 568889999999999999999999987654 47778
Q ss_pred hhhhhcccccCC
Q psy1604 602 YVHRIGRTGRVG 613 (693)
Q Consensus 602 y~Qr~GRagR~G 613 (693)
-.||.||.-|+-
T Consensus 624 EAQRLGRILRAK 635 (776)
T KOG1123|consen 624 EAQRLGRILRAK 635 (776)
T ss_pred HHHHHHHHHHHh
Confidence 889999998874
No 133
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=2.5e-17 Score=149.21 Aligned_cols=118 Identities=40% Similarity=0.663 Sum_probs=110.6
Q ss_pred hHHHHHHHHHhcc--CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCccccc
Q psy1604 504 QKKKKLLELLREK--DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRG 581 (693)
Q Consensus 504 ~k~~~L~~~l~~~--~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~G 581 (693)
.|...+.+++... ..+++||||+++..++.+++.|.+.+..+..+|++++..+|..+++.|+++..+||++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 6788888888764 47899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEE
Q psy1604 582 LDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSF 621 (693)
Q Consensus 582 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~ 621 (693)
+|+|.+++||++++|++...|.|++||++|.|+.|.+++|
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999888764
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=7.1e-16 Score=171.24 Aligned_cols=391 Identities=18% Similarity=0.226 Sum_probs=228.2
Q ss_pred CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 217 NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
|. +|+++|.-.--.+..|+ |+.+.||-|||+++.+|++-..+.. ..|-|++...-||..=++++..
T Consensus 76 G~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~G-----------kgVhVVTvNdYLA~RDae~mg~ 141 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTG-----------KGVIVSTVNEYLAERDAEEMGK 141 (925)
T ss_pred CC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcC-----------CceEEEecchhhhhhhHHHHHH
Confidence 44 78999998887776664 7999999999999999987554433 3578888888999999999999
Q ss_pred HhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcCC------cCCCceeEEEEccchhhh-hCC----
Q psy1604 297 YAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRGR------ISLASVRFVVLDEADRML-DMG---- 364 (693)
Q Consensus 297 ~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~l~-~~~---- 364 (693)
+....++.+.++..+......+.. -.|||+++|...| .++|+... .....+.+.||||+|.++ |..
T Consensus 142 vy~fLGLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPL 219 (925)
T PRK12903 142 VFNFLGLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPL 219 (925)
T ss_pred HHHHhCCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcc
Confidence 888899999988877665544433 3689999999887 56665432 124568899999999876 211
Q ss_pred -----------chHHHHHHhccCC---CCCCCCcceEEeeccCchhHHhhh--hhh-hhhc---hhhhHHHHhhcccccc
Q psy1604 365 -----------FLGDIQHVMQHST---MPDVANRQTLMFSATFPETIQKKG--CNI-LVAT---MGRLKDILDRGRISLA 424 (693)
Q Consensus 365 -----------~~~~i~~i~~~~~---~~~~~~~q~lllSAT~~~~~~~~~--~~~-~~~~---~~~l~~~l~~~~~~~~ 424 (693)
++..+..+...+. +.-....+.+.++..=-..+..+. ..+ -... ...+...+....+...
T Consensus 220 IISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~r 299 (925)
T PRK12903 220 IISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKE 299 (925)
T ss_pred cccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhc
Confidence 2222222222211 000112233344332111111110 000 0000 0112222222233344
Q ss_pred ceeEEEechhhhhhh---------cCcccchhHHhhcccCCccccccceeecccCchhh--------------------h
Q psy1604 425 SVRFVVLDEADRMLD---------MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETI--------------------Q 475 (693)
Q Consensus 425 ~~~~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l--------------------~ 475 (693)
+..|++.+..-.+.+ ..|..-+...+....--.........-+.|+..-+ .
T Consensus 300 d~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~ 379 (925)
T PRK12903 300 DVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFI 379 (925)
T ss_pred CCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHH
Confidence 444444332111111 11111111111111111111111111111111111 1
Q ss_pred cceEEEEeecccccccceeE---EEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecC
Q psy1604 476 KNYIFIAVGIIGGASTDVVQ---TILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHG 550 (693)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg 550 (693)
+-|- ..+-.+....+.... ...+.....|...+++.+.. ..+.++||.|.+....+.|+..|.+.+++..++++
T Consensus 380 ~iY~-l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNA 458 (925)
T PRK12903 380 DIYN-MRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNA 458 (925)
T ss_pred HHhC-CCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecc
Confidence 1110 001011111111111 12333456777777776664 56789999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHhcCC-CcEEEEeCcccccCCCCCCC--------EEEEcCCCCChhhhhhhhcccccCCCcceEEEE
Q psy1604 551 SRLQSQREQAIHDFKTKK-MKVLVATAVASRGLDIKGIR--------HVINYDLPQEIDEYVHRIGRTGRVGNKGRATSF 621 (693)
Q Consensus 551 ~~~~~~R~~~~~~F~~g~-~~ILVaT~v~~~GiDip~v~--------~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~ 621 (693)
... +++..+-. +.|+ -.|.|||++++||.||.--. |||....|.|..---|..||+||.|.+|.+..|
T Consensus 459 k~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 459 KQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 633 34332222 4564 45889999999999996322 899999999998889999999999999999999
Q ss_pred eCCCCc
Q psy1604 622 YDPDQD 627 (693)
Q Consensus 622 ~~~~~d 627 (693)
++.+++
T Consensus 536 lSLeD~ 541 (925)
T PRK12903 536 ISLDDQ 541 (925)
T ss_pred EecchH
Confidence 986643
No 135
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.70 E-value=4.1e-17 Score=133.43 Aligned_cols=78 Identities=37% Similarity=0.710 Sum_probs=75.6
Q ss_pred HHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCC
Q psy1604 536 CYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVG 613 (693)
Q Consensus 536 ~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G 613 (693)
++|+..++.+..+||++++.+|..+++.|+++..+|||||+++++|+|+|++++||++++|+|+..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999986
No 136
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.70 E-value=5.3e-15 Score=164.03 Aligned_cols=126 Identities=19% Similarity=0.187 Sum_probs=88.2
Q ss_pred HHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhc----CCCcEEEEeCcccccCCC
Q psy1604 509 LLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKT----KKMKVLVATAVASRGLDI 584 (693)
Q Consensus 509 L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~----g~~~ILVaT~v~~~GiDi 584 (693)
+..++. ...+++||.+.+....+.+++.|...--....+.|+. ..+..++++|+. |...||++|+.+.+|+|+
T Consensus 462 ~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~--~~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv 538 (636)
T TIGR03117 462 TAAILR-KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEK--NRLASAEQQFLALYANGIQPVLIAAGGAWTGIDL 538 (636)
T ss_pred HHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCC--ccHHHHHHHHHHhhcCCCCcEEEeCCcccccccc
Confidence 334433 4566899999999999999999965422234455543 245668888887 478999999999999999
Q ss_pred --------C--CCCEEEEcCCCCC-------------------------hhhhhhhhcccccCCCc--ceEEEEeCCCCc
Q psy1604 585 --------K--GIRHVINYDLPQE-------------------------IDEYVHRIGRTGRVGNK--GRATSFYDPDQD 627 (693)
Q Consensus 585 --------p--~v~~VI~~d~p~s-------------------------~~~y~Qr~GRagR~G~~--G~~~~~~~~~~d 627 (693)
| .+++||...+|.. ...+.|-+||.-|...+ --+++++++.-.
T Consensus 539 ~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~ 618 (636)
T TIGR03117 539 THKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIH 618 (636)
T ss_pred CCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCC
Confidence 2 3888998777731 22456999999998776 556667776544
Q ss_pred hHHHHHHHHH
Q psy1604 628 GAIAKDLVRI 637 (693)
Q Consensus 628 ~~~~~~l~~~ 637 (693)
..+-+.+.+.
T Consensus 619 ~~yg~~~~~~ 628 (636)
T TIGR03117 619 WPYMESWQES 628 (636)
T ss_pred chhHHHHHHH
Confidence 4444444433
No 137
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.70 E-value=6e-15 Score=165.06 Aligned_cols=129 Identities=20% Similarity=0.134 Sum_probs=100.3
Q ss_pred CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 217 NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
|. +|++.|.-+.-.+. +.-++.+.||.|||+++.+|++-..+. +..|-|++++..||.+-++++..
T Consensus 74 G~-r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~-----------G~~VhVvT~NdyLA~RD~e~m~p 139 (870)
T CHL00122 74 GL-RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALT-----------GKGVHIVTVNDYLAKRDQEWMGQ 139 (870)
T ss_pred CC-CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhc-----------CCceEEEeCCHHHHHHHHHHHHH
Confidence 54 58899988765554 456999999999999999998644433 33589999999999999999999
Q ss_pred HhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcCC------cCCCceeEEEEccchhhh
Q psy1604 297 YAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRGR------ISLASVRFVVLDEADRML 361 (693)
Q Consensus 297 ~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~l~ 361 (693)
+....++.+.++.++.+....+. .-.+||+++|...| .++|+... .....+.+.||||+|.++
T Consensus 140 vy~~LGLsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 140 IYRFLGLTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHcCCceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 98889999999888777655443 34589999999766 35554332 124568899999999876
No 138
>COG4889 Predicted helicase [General function prediction only]
Probab=99.68 E-value=1.7e-16 Score=171.61 Aligned_cols=384 Identities=18% Similarity=0.220 Sum_probs=203.6
Q ss_pred HHHHHHHhCCCCCCCHHHHhhhhhhhcC----CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCC
Q psy1604 208 ILVKNLKKSNYTKPTPIQKYAIPAGLEG----RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPT 283 (693)
Q Consensus 208 ~l~~~l~~~g~~~p~~~Q~~ai~~il~g----~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Pt 283 (693)
++..++.-..-.+|+|+|+.|+....++ ..--+.+.+|+|||+. .|-+.+.+-. .++|+|+|+
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfT-sLkisEala~------------~~iL~LvPS 215 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFT-SLKISEALAA------------ARILFLVPS 215 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccch-HHHHHHHHhh------------hheEeecch
Confidence 3344444445678999999999998864 2233445689999998 4555555533 379999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEEEEeCCCCh------------------------HH-HHHHHhcCCcEEEechhhHHHH
Q psy1604 284 RELVMQIHEVACKYAYSSVLKICLHYGGASS------------------------MH-FNRQLEKGCNILVATMGRLKDI 338 (693)
Q Consensus 284 r~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~------------------------~~-~~~~~~~~~~IlV~Tp~~L~~~ 338 (693)
.+|..|..++...-. ...++...+..+... .. ..++...+--|+++|++.+...
T Consensus 216 IsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i 294 (1518)
T COG4889 216 ISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRI 294 (1518)
T ss_pred HHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHH
Confidence 999999877765432 222333333222110 00 1111223567999999999877
Q ss_pred HhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCC-CCCCCCcceEEeeccCc---hhHHhhhhhhhhhchhhhHH
Q psy1604 339 LDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHST-MPDVANRQTLMFSATFP---ETIQKKGCNILVATMGRLKD 414 (693)
Q Consensus 339 l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~-~~~~~~~q~lllSAT~~---~~~~~~~~~~~~~~~~~l~~ 414 (693)
-+-...-+..+++||+|||||........+=..-+.+.. -......+.+.|+||+. +..+.-+..
T Consensus 295 ~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd----------- 363 (1518)
T COG4889 295 KEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKD----------- 363 (1518)
T ss_pred HHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhh-----------
Confidence 655555678999999999998653221111111111100 01112346788899962 111111111
Q ss_pred HHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccc-cccce
Q psy1604 415 ILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGG-ASTDV 493 (693)
Q Consensus 415 ~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-~~~~~ 493 (693)
++.....+|....+-.. ...+.|...+...+..+|..+....... .....
T Consensus 364 ---------~s~~l~SMDDe~~fGee--------------------f~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~ 414 (1518)
T COG4889 364 ---------HSAELSSMDDELTFGEE--------------------FHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVL 414 (1518)
T ss_pred ---------ccceeeccchhhhhchh--------------------hhcccHHHHHHhhhhccceEEEEEechhhhhhhh
Confidence 11111111111110000 0000000011111112222111111111 11111
Q ss_pred eEEEEEcc------chhHHHHHHHHHhc---------------cCCCcEEEEecChHhHHHHHHHHh-----------h-
Q psy1604 494 VQTILEVP------KQQKKKKLLELLRE---------------KDEDGVIVFVSTIRNADFIACYLC-----------E- 540 (693)
Q Consensus 494 ~~~~~~~~------~~~k~~~L~~~l~~---------------~~~~kvLVF~~s~~~a~~l~~~L~-----------~- 540 (693)
.+...... .-.|+.-...-|.. .+-.+.|-||.+.++...+++.+. +
T Consensus 415 ~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d 494 (1518)
T COG4889 415 QSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKD 494 (1518)
T ss_pred hhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11110001 11122111121111 012346788888777777666542 1
Q ss_pred -CCCceEE--ecCCCCHHHHHHHHH---HHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCC
Q psy1604 541 -TEIATTS--IHGSRLQSQREQAIH---DFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGN 614 (693)
Q Consensus 541 -~~~~v~~--lhg~~~~~~R~~~~~---~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~ 614 (693)
.++.+.+ +.|.|+..+|...+. .|....++||---..+++|+|+|.++.||+|++-.++.+.+|.+||.-|...
T Consensus 495 ~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~ 574 (1518)
T COG4889 495 FKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAK 574 (1518)
T ss_pred CCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCc
Confidence 2344444 458899888865543 3466789999888999999999999999999999999999999999999732
Q ss_pred -cceEEEEeC---C-----------CCchHHHHHHHHHHHHcCCCc
Q psy1604 615 -KGRATSFYD---P-----------DQDGAIAKDLVRILEQAGQPV 645 (693)
Q Consensus 615 -~G~~~~~~~---~-----------~~d~~~~~~l~~~l~~~~~~v 645 (693)
+...++++. | +.+.+..-++.+.|+..+..+
T Consensus 575 gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnALRShD~am 620 (1518)
T COG4889 575 GKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKALRSHDEAM 620 (1518)
T ss_pred CCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHHHHhcCHHh
Confidence 222333321 1 123344556777776665533
No 139
>KOG4150|consensus
Probab=99.68 E-value=3.3e-16 Score=162.34 Aligned_cols=344 Identities=14% Similarity=0.098 Sum_probs=221.1
Q ss_pred HHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHH
Q psy1604 208 ILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELV 287 (693)
Q Consensus 208 ~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 287 (693)
.+...++.+..+..+.+|.+++..+.+|+++++.-.|.+||.+++.+.....+...+.. ..+++.|+.+++
T Consensus 274 ~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s---------~~~~~~~~~~~~ 344 (1034)
T KOG4150|consen 274 SIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHAT---------NSLLPSEMVEHL 344 (1034)
T ss_pred HHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCccc---------ceecchhHHHHh
Confidence 34444555667788999999999999999999999999999999999888777665532 468999999998
Q ss_pred HHHHHHHHHHh---cCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC----cCCCceeEEEEccchhh
Q psy1604 288 MQIHEVACKYA---YSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR----ISLASVRFVVLDEADRM 360 (693)
Q Consensus 288 ~Q~~~~~~~~~---~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~----~~l~~~~~lVlDEah~l 360 (693)
+...+.+.-.. +...-.++..+.+..........+.+.+++++.|.+.....--+. ..+-...++++||+|.+
T Consensus 345 ~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y 424 (1034)
T KOG4150|consen 345 RNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALY 424 (1034)
T ss_pred hccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeee
Confidence 87544321110 001112334455666666666778899999999998876543222 23445678999999976
Q ss_pred hhCC---chHHHHHHhccCC-CCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 361 LDMG---FLGDIQHVMQHST-MPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 361 ~~~~---~~~~i~~i~~~~~-~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
+-.- ....++.++.... .-...+-|++-.|||+...++.....+ ....+..+..|-..
T Consensus 425 ~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~-----------------~~~E~~Li~~DGSP- 486 (1034)
T KOG4150|consen 425 LFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELA-----------------NLSELELVTIDGSP- 486 (1034)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhc-----------------CCcceEEEEecCCC-
Confidence 4321 1112222221110 111236688888888765544332221 11111111111100
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc-
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE- 515 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~- 515 (693)
+. .+.++.+.-. -..+. ...++.++.....++.+
T Consensus 487 -----------------------------------s~-~K~~V~WNP~-------~~P~~--~~~~~~~i~E~s~~~~~~ 521 (1034)
T KOG4150|consen 487 -----------------------------------SS-EKLFVLWNPS-------APPTS--KSEKSSKVVEVSHLFAEM 521 (1034)
T ss_pred -----------------------------------Cc-cceEEEeCCC-------CCCcc--hhhhhhHHHHHHHHHHHH
Confidence 00 0000100000 00000 00122333333333332
Q ss_pred -cCCCcEEEEecChHhHHHHHHHHhh----CC----CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCC
Q psy1604 516 -KDEDGVIVFVSTIRNADFIACYLCE----TE----IATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKG 586 (693)
Q Consensus 516 -~~~~kvLVF~~s~~~a~~l~~~L~~----~~----~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~ 586 (693)
..+-++|-||.+++-|+.+-...++ .+ -.+..+.|+...++|.++..+.=.|+..-+|||+.++.||||..
T Consensus 522 i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~ 601 (1034)
T KOG4150|consen 522 VQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGH 601 (1034)
T ss_pred HHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcccccc
Confidence 3466899999999999987665432 22 13566789999999999999988999999999999999999999
Q ss_pred CCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeC
Q psy1604 587 IRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYD 623 (693)
Q Consensus 587 v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~ 623 (693)
++.|++.++|.|++.+.|..|||||.+++..++++..
T Consensus 602 LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 602 LDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred ceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 9999999999999999999999999988887766543
No 140
>KOG0391|consensus
Probab=99.68 E-value=2e-15 Score=167.28 Aligned_cols=130 Identities=17% Similarity=0.301 Sum_probs=107.3
Q ss_pred HHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCC--CcEEEEeCcccc
Q psy1604 505 KKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKK--MKVLVATAVASR 580 (693)
Q Consensus 505 k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~--~~ILVaT~v~~~ 580 (693)
|+..|.-+|+. ..+.++|||+.-....+.|..+|.-+|+.+..+.|...-++|+..+++|+... ...+++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 44444444443 45678999999999999999999999999999999999999999999999765 456789999999
Q ss_pred cCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHH
Q psy1604 581 GLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLV 635 (693)
Q Consensus 581 GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~ 635 (693)
|||+.+.+.||+||..||+..-.|.-.|+.|.|+...+.++-.-. +..+-..|.
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLIS-e~TIEeniL 1394 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLIS-ERTIEENIL 1394 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeec-cchHHHHHH
Confidence 999999999999999999999999999999999887766554322 334444433
No 141
>KOG0388|consensus
Probab=99.68 E-value=1.2e-15 Score=161.70 Aligned_cols=120 Identities=22% Similarity=0.316 Sum_probs=104.3
Q ss_pred hHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCc-EEEEeCcccc
Q psy1604 504 QKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMK-VLVATAVASR 580 (693)
Q Consensus 504 ~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~-ILVaT~v~~~ 580 (693)
.|+..|-++|.. ..+.++|+|++-.+..+.+.++|.-.++....+.|.....+|..++.+|+..++- .|++|...+.
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 344444455543 4677899999999999999999999999999999999999999999999986654 5899999999
Q ss_pred cCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeC
Q psy1604 581 GLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYD 623 (693)
Q Consensus 581 GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~ 623 (693)
|||+..++.||+||..|++..-.|.+.||.|.||...+.++-.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl 1150 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRL 1150 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeee
Confidence 9999999999999999999999999999999999877655543
No 142
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.66 E-value=2.1e-14 Score=169.77 Aligned_cols=124 Identities=15% Similarity=0.191 Sum_probs=90.2
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhCCC--ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCC--CCEEE
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCETEI--ATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKG--IRHVI 591 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~~~--~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~--v~~VI 591 (693)
..++++|||+++.+..+.+++.|..... ....+.-+++...|.+++++|+.+.-.||++|..+++|||+|+ +.+||
T Consensus 750 ~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~vi 829 (928)
T PRK08074 750 ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLV 829 (928)
T ss_pred hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEE
Confidence 4567899999999999999999975422 1222333444456888999999988899999999999999987 57888
Q ss_pred EcCCCC-C-----------------------------hhhhhhhhcccccCCCcceEEEEeCCC-CchHHHHHHHHHHH
Q psy1604 592 NYDLPQ-E-----------------------------IDEYVHRIGRTGRVGNKGRATSFYDPD-QDGAIAKDLVRILE 639 (693)
Q Consensus 592 ~~d~p~-s-----------------------------~~~y~Qr~GRagR~G~~G~~~~~~~~~-~d~~~~~~l~~~l~ 639 (693)
...+|. + ...+.|.+||.-|..++--+++++++. ....+-+.+.+.|.
T Consensus 830 I~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 830 IVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 877663 1 223459999999997665567777654 23445555655554
No 143
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=5.9e-14 Score=156.77 Aligned_cols=348 Identities=17% Similarity=0.182 Sum_probs=191.5
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.|+++|.-+--.+..| -|+.+.||-|||+++.+|++-..+.. ..|-||+++.-||..-++++..+..
T Consensus 85 r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~G-----------kgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 85 RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALTG-----------KGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhcC-----------CCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 7889998777666555 58999999999999999988665443 3589999999999999999999988
Q ss_pred CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcC------CcCCCceeEEEEccchhhh-hCCc------
Q psy1604 300 SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRG------RISLASVRFVVLDEADRML-DMGF------ 365 (693)
Q Consensus 300 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEah~l~-~~~~------ 365 (693)
..++.+.++.++...... ...-.|||+++|...| .++|+.+ ......+.+.||||+|.++ |...
T Consensus 152 ~LGLtvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIIS 229 (939)
T PRK12902 152 FLGLSVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIIS 229 (939)
T ss_pred HhCCeEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCccccc
Confidence 899999998877665543 3445799999999888 3444322 1234678999999999876 2111
Q ss_pred ---------hHHHHHHhccCC----------CCCCCCcceEEeeccCchhHHhhhh-hhhhhch----hhhHHHHhhccc
Q psy1604 366 ---------LGDIQHVMQHST----------MPDVANRQTLMFSATFPETIQKKGC-NILVATM----GRLKDILDRGRI 421 (693)
Q Consensus 366 ---------~~~i~~i~~~~~----------~~~~~~~q~lllSAT~~~~~~~~~~-~~~~~~~----~~l~~~l~~~~~ 421 (693)
+.....+...+. +.-....+.+.++-.=-..+..... .-+.... ..+...+....+
T Consensus 230 g~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~l 309 (939)
T PRK12902 230 GQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKEL 309 (939)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHH
Confidence 111111111100 0001122333333321111111100 0000000 112222233333
Q ss_pred cccceeEEEechhhhhhh---------cCcccchhHHhhcccCCccccccceeecccCchhh------------------
Q psy1604 422 SLASVRFVVLDEADRMLD---------MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETI------------------ 474 (693)
Q Consensus 422 ~~~~~~~~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l------------------ 474 (693)
...+..|++.+..-.+.+ ..+..-+...+....--........+-+.|+..-+
T Consensus 310 f~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~ 389 (939)
T PRK12902 310 FIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEV 389 (939)
T ss_pred HhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHH
Confidence 444555555432211111 11111111111111111111111111111111111
Q ss_pred --hcceEEEEeeccccccccee---EEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEE
Q psy1604 475 --QKNYIFIAVGIIGGASTDVV---QTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTS 547 (693)
Q Consensus 475 --~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~ 547 (693)
.+-|- ..+-......+... ....+.....|...+++.+.. ..+.|+||-+.+.+..+.++..|.+.+++..+
T Consensus 390 Ef~~iY~-l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~v 468 (939)
T PRK12902 390 EFEKTYK-LEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNL 468 (939)
T ss_pred HHHHHhC-CcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhe
Confidence 11110 00000111111110 112333456777777776664 57889999999999999999999999999999
Q ss_pred ecCCCCHHHHH-HHHHHHhcCCC-cEEEEeCcccccCCCC
Q psy1604 548 IHGSRLQSQRE-QAIHDFKTKKM-KVLVATAVASRGLDIK 585 (693)
Q Consensus 548 lhg~~~~~~R~-~~~~~F~~g~~-~ILVaT~v~~~GiDip 585 (693)
++..-...+++ +++. +.|+. .|-|||++++||-||.
T Consensus 469 LNAk~~~~~~EA~IIa--~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 469 LNAKPENVEREAEIVA--QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred eeCCCcchHhHHHHHH--hcCCCCcEEEeccCCCCCcCEe
Confidence 99863222332 3333 24553 5889999999999983
No 144
>KOG0953|consensus
Probab=99.65 E-value=4.4e-15 Score=154.52 Aligned_cols=270 Identities=18% Similarity=0.201 Sum_probs=173.6
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASS 314 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~ 314 (693)
.+-++-++||.||||.- +|+++.... +.++.-|.|-||..+++.+.+.+ +.+..++|....
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~ak-----------sGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~ 251 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSAK-----------SGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERR 251 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhhc-----------cceecchHHHHHHHHHHHhhhcC----CCccccccceee
Confidence 34567789999999997 456664443 35999999999999999988854 555556654332
Q ss_pred HHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 315 MHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 315 ~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
....+ ...+..+-||-++..- -..+++.||||++.|.|...+-.+...+.-.. . ...++.
T Consensus 252 ~~~~~--~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~--A-dEiHLC------- 311 (700)
T KOG0953|consen 252 FVLDN--GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA--A-DEIHLC------- 311 (700)
T ss_pred ecCCC--CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhh--h-hhhhcc-------
Confidence 11111 1246788888888731 24689999999999987765443333322110 0 011111
Q ss_pred hhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhh
Q psy1604 395 ETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETI 474 (693)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l 474 (693)
+.|..+.- ...+.. .
T Consensus 312 ------------Gepsvldl-------------------V~~i~k----------------------------------~ 326 (700)
T KOG0953|consen 312 ------------GEPSVLDL-------------------VRKILK----------------------------------M 326 (700)
T ss_pred ------------CCchHHHH-------------------HHHHHh----------------------------------h
Confidence 11111000 000000 0
Q ss_pred hcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCc-eEEecCCCC
Q psy1604 475 QKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIA-TTSIHGSRL 553 (693)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~~~ 553 (693)
..+-+. ...+.+...-...+.++.-+....++-++| |-+++.+-.+...+.+.+.. +++++|+++
T Consensus 327 TGd~ve-------------v~~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLP 392 (700)
T KOG0953|consen 327 TGDDVE-------------VREYERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLP 392 (700)
T ss_pred cCCeeE-------------EEeecccCcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCC
Confidence 000000 011111111122234555556656666766 44667777788888777654 999999999
Q ss_pred HHHHHHHHHHHhc--CCCcEEEEeCcccccCCCCCCCEEEEcCCC---------CChhhhhhhhcccccCCC---cceEE
Q psy1604 554 QSQREQAIHDFKT--KKMKVLVATAVASRGLDIKGIRHVINYDLP---------QEIDEYVHRIGRTGRVGN---KGRAT 619 (693)
Q Consensus 554 ~~~R~~~~~~F~~--g~~~ILVaT~v~~~GiDip~v~~VI~~d~p---------~s~~~y~Qr~GRagR~G~---~G~~~ 619 (693)
++.|.+--..|++ ++++||||||+.++|+|+ +++.||+|++- -+..+..|.+|||||.|. .|.+.
T Consensus 393 PeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vT 471 (700)
T KOG0953|consen 393 PETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVT 471 (700)
T ss_pred CchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEE
Confidence 9999999999987 899999999999999999 79999998864 367788999999999974 58888
Q ss_pred EEeC
Q psy1604 620 SFYD 623 (693)
Q Consensus 620 ~~~~ 623 (693)
.|..
T Consensus 472 tl~~ 475 (700)
T KOG0953|consen 472 TLHS 475 (700)
T ss_pred EeeH
Confidence 8775
No 145
>KOG0386|consensus
Probab=99.64 E-value=3.6e-16 Score=172.38 Aligned_cols=382 Identities=18% Similarity=0.223 Sum_probs=221.2
Q ss_pred CCCHHHHhhhhhhhc----CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLE----GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~----g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
.+.+||...+.++.+ +-+-|++.+||.|||.+ .+.++..++.... ..+| -||++|+..|.+ |..++.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~------~~GP-~LvivPlstL~N-W~~Ef~ 464 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQ------MQGP-FLIIVPLSTLVN-WSSEFP 464 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcc------cCCC-eEEeccccccCC-chhhcc
Confidence 789999999988763 35789999999999998 5555556655432 2233 589999988876 778888
Q ss_pred HHhcCCCeeEEEEeCCCChHH---HHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHH
Q psy1604 296 KYAYSSVLKICLHYGGASSMH---FNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHV 372 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~---~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i 372 (693)
+|... +.... |.|.+... .........+|+++|++.+.. .+..+.--++.++||||.|+|.+. ...+...
T Consensus 465 kWaPS--v~~i~-YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~ 537 (1157)
T KOG0386|consen 465 KWAPS--VQKIQ-YKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDT 537 (1157)
T ss_pred ccccc--eeeee-eeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHH
Confidence 88632 33333 33333211 111122478999999998865 111122235679999999999643 3344444
Q ss_pred hccCCCCCCCCcceEEeeccCc-hhHHhhhhh--h----hhhchhhhHHHHhhccccccc-e------eEEEechhhhhh
Q psy1604 373 MQHSTMPDVANRQTLMFSATFP-ETIQKKGCN--I----LVATMGRLKDILDRGRISLAS-V------RFVVLDEADRML 438 (693)
Q Consensus 373 ~~~~~~~~~~~~q~lllSAT~~-~~~~~~~~~--~----~~~~~~~l~~~l~~~~~~~~~-~------~~~~~d~~~~~~ 438 (693)
+.. .+.....+++++|+- +.+..+... | +..+...+..|+...--.... . ..+++...+.++
T Consensus 538 L~t----~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVL 613 (1157)
T KOG0386|consen 538 LNT----HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVL 613 (1157)
T ss_pred hhc----cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhh
Confidence 432 234667889999962 112221111 1 111222233333221111110 0 000011111111
Q ss_pred hcCcccchhHH-------------------hhcccCCcccccccee--------ecccCch-------hhhcceEEEEee
Q psy1604 439 DMGFLGDIQHV-------------------MQHSTMPDVANRQTLM--------FSATFPE-------TIQKNYIFIAVG 484 (693)
Q Consensus 439 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~--------~~~t~~~-------~l~~~~~~~~~~ 484 (693)
..-++.....- +....++...+...+. .+-++.+ -....|++..+.
T Consensus 614 RPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve 693 (1157)
T KOG0386|consen 614 RPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVE 693 (1157)
T ss_pred hHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhc
Confidence 00000000000 0000000000000000 0000000 001122221111
Q ss_pred cccccccceeEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHH
Q psy1604 485 IIGGASTDVVQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIH 562 (693)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~ 562 (693)
.......... ..+....|+..|-.+|-. ..++++|.||.-....+.+..+|.-..+....+.|.....+|...++
T Consensus 694 ~~~~~~~~~~---dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~ 770 (1157)
T KOG0386|consen 694 NSYTLHYDIK---DLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLE 770 (1157)
T ss_pred cccccccChh---HHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHH
Confidence 1111111110 111223455555555543 56789999999999999999999999999999999999999999999
Q ss_pred HHhcCC---CcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCC
Q psy1604 563 DFKTKK---MKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDP 624 (693)
Q Consensus 563 ~F~~g~---~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~ 624 (693)
.|..-. +.+|.+|.....|+|+.-++.||.||..|++....|+..||.|.|+...+-++...
T Consensus 771 ~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 771 IFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred HhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 998654 34689999999999999999999999999999999999999999998888777653
No 146
>KOG1002|consensus
Probab=99.64 E-value=1.6e-14 Score=147.96 Aligned_cols=140 Identities=20% Similarity=0.233 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHhc----cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcC-CCcE-EEEeC
Q psy1604 503 QQKKKKLLELLRE----KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTK-KMKV-LVATA 576 (693)
Q Consensus 503 ~~k~~~L~~~l~~----~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g-~~~I-LVaT~ 576 (693)
..|++.|.+.|.. ...-|.|||.+.....+.+.-.|.+.|+.+..+-|+|+...|...++.|++. ++.| |++-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 4566666655432 4456789999999999999999999999999999999999999999999975 3554 56667
Q ss_pred cccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCc--ceEEEEeCCCCchHHHHHHHHHHHHcCCCc
Q psy1604 577 VASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNK--GRATSFYDPDQDGAIAKDLVRILEQAGQPV 645 (693)
Q Consensus 577 v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~--G~~~~~~~~~~d~~~~~~l~~~l~~~~~~v 645 (693)
..+.-+|+....+|+.+|+-|+++.-.|...|..|.||. =+++.|+-. ..+...++++.+.+.+-+
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE---nsiE~kIieLQeKKa~mi 766 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE---NSIEEKIIELQEKKANMI 766 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh---ccHHHHHHHHHHHHhhhh
Confidence 888889999999999999999999999999999999974 466677653 245566666655544433
No 147
>KOG4439|consensus
Probab=99.64 E-value=8.2e-15 Score=156.08 Aligned_cols=119 Identities=21% Similarity=0.266 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHhc---cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhc--CCCcE-EEEeC
Q psy1604 503 QQKKKKLLELLRE---KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKT--KKMKV-LVATA 576 (693)
Q Consensus 503 ~~k~~~L~~~l~~---~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~--g~~~I-LVaT~ 576 (693)
..|+..+++.++. ....+++|...=......+...|++.++....+||.....+|+.+++.|.. |..+| |++-.
T Consensus 728 S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLt 807 (901)
T KOG4439|consen 728 SCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLT 807 (901)
T ss_pred hhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEc
Confidence 3455555555543 345555555544555667778899999999999999999999999999974 43444 56667
Q ss_pred cccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEE
Q psy1604 577 VASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSF 621 (693)
Q Consensus 577 v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~ 621 (693)
..+.|||+.+.+|+|.+|+-|+++--.|...|.-|.||+..++++
T Consensus 808 AGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 808 AGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred cCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 888999999999999999999999999999999999998877654
No 148
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.63 E-value=8.7e-15 Score=133.88 Aligned_cols=144 Identities=37% Similarity=0.448 Sum_probs=108.2
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSM 315 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 315 (693)
+++++.++||+|||..++..+.+.+... ...+++|++|++.|+.|+.+.+..+... .+.+..+.+.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 70 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIK 70 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchh
Confidence 4689999999999999887777765442 2347999999999999999999888754 56677777666555
Q ss_pred HHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccC
Q psy1604 316 HFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATF 393 (693)
Q Consensus 316 ~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~ 393 (693)
..........+|+++|++.+...+.........+++||+||+|.+....+.......... .....+++++|||+
T Consensus 71 ~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~----~~~~~~~i~~saTp 144 (144)
T cd00046 71 QQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLK----LPKDRQVLLLSATP 144 (144)
T ss_pred HHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhh----CCccceEEEEeccC
Confidence 544445668999999999999888766555667899999999999876654432111111 12367899999995
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.61 E-value=5.6e-15 Score=142.24 Aligned_cols=152 Identities=20% Similarity=0.166 Sum_probs=102.2
Q ss_pred CCCHHHHhhhhhhhc-------CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLE-------GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHE 292 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~-------g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~ 292 (693)
+|+++|.+++..+.+ .+++++.+|||||||.+++..+.... . ++|+++|+..|+.|+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~-------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R-------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C-------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c-------------ceeEecCHHHHHHHHHH
Confidence 589999999999884 58999999999999999765454433 2 58999999999999999
Q ss_pred HHHHHhcCCCeeEEE-----------EeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC-----------cCCCcee
Q psy1604 293 VACKYAYSSVLKICL-----------HYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR-----------ISLASVR 350 (693)
Q Consensus 293 ~~~~~~~~~~l~~~~-----------~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~-----------~~l~~~~ 350 (693)
.+..+.......... ..................+++++|.+.|........ ......+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 69 EFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred HHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 997765432211111 111111112222234578999999999988765321 2345678
Q ss_pred EEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 351 FVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 351 ~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
+||+||||++....- ...++. .....+++|||||+
T Consensus 149 ~vI~DEaH~~~~~~~---~~~i~~------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 149 LVIIDEAHHYPSDSS---YREIIE------FKAAFILGLTATPF 183 (184)
T ss_dssp EEEEETGGCTHHHHH---HHHHHH------SSCCEEEEEESS-S
T ss_pred EEEEehhhhcCCHHH---HHHHHc------CCCCeEEEEEeCcc
Confidence 999999998865442 233333 23678999999974
No 150
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.60 E-value=1e-14 Score=174.92 Aligned_cols=405 Identities=18% Similarity=0.188 Sum_probs=227.6
Q ss_pred CCCCHHHHhhhhhhh-----cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGL-----EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il-----~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
..+++||.+.+..+. .+.+.+++.++|.|||++.+..+.+ +..... ...+..++++|+ +++.+|.++
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~------~~~~~~liv~p~-s~~~nw~~e 408 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIK------VYLGPALIVVPA-SLLSNWKRE 408 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhccc------CCCCCeEEEecH-HHHHHHHHH
Confidence 467899999998755 2578889999999999986555544 222221 113468999997 788889999
Q ss_pred HHHHhcCCCeeEEEEeCCCCh----HHHHHHHhcC-----CcEEEechhhHHHHH-hcCCcCCCceeEEEEccchhhhhC
Q psy1604 294 ACKYAYSSVLKICLHYGGASS----MHFNRQLEKG-----CNILVATMGRLKDIL-DRGRISLASVRFVVLDEADRMLDM 363 (693)
Q Consensus 294 ~~~~~~~~~l~~~~~~gg~~~----~~~~~~~~~~-----~~IlV~Tp~~L~~~l-~~~~~~l~~~~~lVlDEah~l~~~ 363 (693)
+.+|...... +...+|.... ......+... .+++++|++.+...+ ....+.-..+.++|+||+|++.+.
T Consensus 409 ~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 409 FEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred HhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh
Confidence 9888755332 5556665541 2333333322 799999999998742 112234456889999999998765
Q ss_pred CchHHHHHHhccCCCCCCCCcceEEeeccC-chhHHhhhhhhh-hhchhhhH-------HHHhhccccccce--------
Q psy1604 364 GFLGDIQHVMQHSTMPDVANRQTLMFSATF-PETIQKKGCNIL-VATMGRLK-------DILDRGRISLASV-------- 426 (693)
Q Consensus 364 ~~~~~i~~i~~~~~~~~~~~~q~lllSAT~-~~~~~~~~~~~~-~~~~~~l~-------~~l~~~~~~~~~~-------- 426 (693)
......... .. .....+++|.|| .+.+..+..-+- ...|..+. .+...........
T Consensus 488 ~s~~~~~l~--~~-----~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 560 (866)
T COG0553 488 QSSEGKALQ--FL-----KALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEAREL 560 (866)
T ss_pred hhHHHHHHH--HH-----hhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHH
Confidence 432222111 11 133448899997 444444433222 22222222 1111110000000
Q ss_pred --------------eEEEec--h-------hhhhhhcCcccchhHHhhcccC------Cccccccceee--------ccc
Q psy1604 427 --------------RFVVLD--E-------ADRMLDMGFLGDIQHVMQHSTM------PDVANRQTLMF--------SAT 469 (693)
Q Consensus 427 --------------~~~~~d--~-------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------~~t 469 (693)
+....+ . ................+..... ..+........ ...
T Consensus 561 ~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (866)
T COG0553 561 GIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELN 640 (866)
T ss_pred HHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhH
Confidence 000000 0 0000000000000000000000 00000000000 000
Q ss_pred C---chhhh---cceEEEEeeccccccccee-----EEE-----EEccch-hHHHHHHHHH-hc--cCCC--cEEEEecC
Q psy1604 470 F---PETIQ---KNYIFIAVGIIGGASTDVV-----QTI-----LEVPKQ-QKKKKLLELL-RE--KDED--GVIVFVST 527 (693)
Q Consensus 470 ~---~~~l~---~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~-~k~~~L~~~l-~~--~~~~--kvLVF~~s 527 (693)
+ -..++ ..+................ ... ...... .|...+.+++ .. .... ++|||++.
T Consensus 641 ~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~ 720 (866)
T COG0553 641 ILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQF 720 (866)
T ss_pred HHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCc
Confidence 0 00000 0000000000000000000 000 000111 5677776766 22 3444 89999999
Q ss_pred hHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcC--CCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhh
Q psy1604 528 IRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTK--KMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHR 605 (693)
Q Consensus 528 ~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g--~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr 605 (693)
....+.+...|...++.+..++|.++..+|...+++|.++ ...+++++..++.|+|+...++||+||..|+++...|.
T Consensus 721 t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa 800 (866)
T COG0553 721 TPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQA 800 (866)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHH
Confidence 9999999999999998999999999999999999999986 44567888999999999999999999999999999999
Q ss_pred hcccccCCCcceEEEEeCCCCchHHHHHHHHHHHH
Q psy1604 606 IGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQ 640 (693)
Q Consensus 606 ~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~ 640 (693)
..|+.|.||+..+.++-... ..++...+.+....
T Consensus 801 ~dRa~RigQ~~~v~v~r~i~-~~tiEe~i~~~~~~ 834 (866)
T COG0553 801 IDRAHRIGQKRPVKVYRLIT-RGTIEEKILELQEK 834 (866)
T ss_pred HHHHHHhcCcceeEEEEeec-CCcHHHHHHHHHHH
Confidence 99999999988776665422 23344444444433
No 151
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=3.5e-13 Score=152.06 Aligned_cols=127 Identities=21% Similarity=0.278 Sum_probs=102.8
Q ss_pred EccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC
Q psy1604 499 EVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA 576 (693)
Q Consensus 499 ~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~ 576 (693)
+.....|...+++.+.. ..+.|+||-+.|.+..+.|++.|...+++..+|++.....+-+.+-+.=+.| .|-|||+
T Consensus 607 y~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATN 684 (1112)
T PRK12901 607 YKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATN 684 (1112)
T ss_pred ecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEecc
Confidence 34456778888777765 5788999999999999999999999999988888875544444443332333 5889999
Q ss_pred cccccCCCC--------CCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCc
Q psy1604 577 VASRGLDIK--------GIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQD 627 (693)
Q Consensus 577 v~~~GiDip--------~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d 627 (693)
+++||-||. +==+||-...+.|..--.|-.||+||.|.+|.+..|++.+++
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999999996 224799999999999999999999999999999999987654
No 152
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.55 E-value=1.7e-14 Score=118.95 Aligned_cols=81 Identities=47% Similarity=0.722 Sum_probs=77.4
Q ss_pred HHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccC
Q psy1604 533 FIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRV 612 (693)
Q Consensus 533 ~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~ 612 (693)
.+++.|...++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|++++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy1604 613 G 613 (693)
Q Consensus 613 G 613 (693)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 153
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.55 E-value=4e-13 Score=152.38 Aligned_cols=349 Identities=18% Similarity=0.178 Sum_probs=183.3
Q ss_pred CCCHHHHhhhhhhhc------CCC--EEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLE------GRD--LMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIH 291 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~------g~~--vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~ 291 (693)
.-+.||.+|+..+.. .+. ++-.|.||+|||++ =.-|+..|... ..++|..|..-.|.|..|.-
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~--------~~g~RfsiALGLRTLTLQTG 478 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDD--------KQGARFAIALGLRSLTLQTG 478 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCC--------CCCceEEEEccccceeccch
Confidence 457899999988764 122 44469999999997 34455444332 34567888888888888887
Q ss_pred HHHHHHhcCCCeeEEEEeCCCChHH-------------------------------------------HHHHHh------
Q psy1604 292 EVACKYAYSSVLKICLHYGGASSMH-------------------------------------------FNRQLE------ 322 (693)
Q Consensus 292 ~~~~~~~~~~~l~~~~~~gg~~~~~-------------------------------------------~~~~~~------ 322 (693)
+.+++-..-..-...+++|+....+ ....+.
T Consensus 479 da~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~ 558 (1110)
T TIGR02562 479 HALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEK 558 (1110)
T ss_pred HHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhh
Confidence 7776654333333333333221100 000000
Q ss_pred --cCCcEEEechhhHHHHHhc---CCcCCC--c--eeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccC
Q psy1604 323 --KGCNILVATMGRLKDILDR---GRISLA--S--VRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATF 393 (693)
Q Consensus 323 --~~~~IlV~Tp~~L~~~l~~---~~~~l~--~--~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~ 393 (693)
-...|+|||+..++..... +...+. . -+.|||||+|-+ |......+..++.... .....+++||||+
T Consensus 559 rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~---~lG~~VlLmSATL 634 (1110)
T TIGR02562 559 TLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAG---LLGSRVLLSSATL 634 (1110)
T ss_pred hhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHH---HcCCCEEEEeCCC
Confidence 0368999999999877632 111111 1 268999999966 3333344444444211 1267899999999
Q ss_pred chhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhc-C----cccchhHHhhcccCCccccccceeecc
Q psy1604 394 PETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDM-G----FLGDIQHVMQHSTMPDVANRQTLMFSA 468 (693)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (693)
|+.+......................... ..+-..-.|+....... . +......+.....
T Consensus 635 P~~l~~~L~~Ay~~G~~~~q~~~g~~~~~-~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~-------------- 699 (1110)
T TIGR02562 635 PPALVKTLFRAYEAGRQMYQALYGQPKKP-LNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRA-------------- 699 (1110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHH--------------
Confidence 98877654333211111111111111111 12222223332211110 0 1111111110000
Q ss_pred cCchhhhcceEEEEeecccccccceeEEEEEcc-----chhHHHHHHHHH--------hc-----c-CCCc---EEEEec
Q psy1604 469 TFPETIQKNYIFIAVGIIGGASTDVVQTILEVP-----KQQKKKKLLELL--------RE-----K-DEDG---VIVFVS 526 (693)
Q Consensus 469 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~k~~~L~~~l--------~~-----~-~~~k---vLVF~~ 526 (693)
..+.+....- .-.+..++ .......+.+.+ .. . .+++ -||-++
T Consensus 700 ---~~L~~~p~~R------------~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~a 764 (1110)
T TIGR02562 700 ---VQLAKKPVRR------------LAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVA 764 (1110)
T ss_pred ---HHHhcCcccc------------eEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEc
Confidence 0000000000 00000000 111122222222 11 1 1223 267777
Q ss_pred ChHhHHHHHHHHhhC------CCceEEecCCCCHHHHHHHHHHH----------------------hc----CCCcEEEE
Q psy1604 527 TIRNADFIACYLCET------EIATTSIHGSRLQSQREQAIHDF----------------------KT----KKMKVLVA 574 (693)
Q Consensus 527 s~~~a~~l~~~L~~~------~~~v~~lhg~~~~~~R~~~~~~F----------------------~~----g~~~ILVa 574 (693)
+++.+-.++..|... .+.+.++|+......|..+.+.. ++ +...|+|+
T Consensus 765 nI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~ 844 (1110)
T TIGR02562 765 NIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLA 844 (1110)
T ss_pred CchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEE
Confidence 777777777766433 24578899998877776655442 11 35679999
Q ss_pred eCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCC
Q psy1604 575 TAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGN 614 (693)
Q Consensus 575 T~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~ 614 (693)
|++.+.|+|+ +.+++|-- |.++.+.+||+||+.|-++
T Consensus 845 Tqv~E~g~D~-dfd~~~~~--~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 845 TPVEEVGRDH-DYDWAIAD--PSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eeeEEEEecc-cCCeeeec--cCcHHHHHHHhhccccccc
Confidence 9999999999 56766543 6679999999999999864
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.48 E-value=4.7e-12 Score=146.36 Aligned_cols=106 Identities=22% Similarity=0.320 Sum_probs=79.7
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhCCCc-eEEecCCCCHHHHHHHHHHHhcCCC-cEEEEeCcccccCCCCC--CCEEE
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCETEIA-TTSIHGSRLQSQREQAIHDFKTKKM-KVLVATAVASRGLDIKG--IRHVI 591 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~~~~~~R~~~~~~F~~g~~-~ILVaT~v~~~GiDip~--v~~VI 591 (693)
..++++|||+++.+..+.+++.|...... ....++. ..+...++.|+.+.- .++|+|..+++|+|+++ +..||
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEE
Confidence 34458999999999999999999876543 3344444 344478888887655 89999999999999986 57788
Q ss_pred EcCCCC------------------------------ChhhhhhhhcccccCCCcceEEEEeCC
Q psy1604 592 NYDLPQ------------------------------EIDEYVHRIGRTGRVGNKGRATSFYDP 624 (693)
Q Consensus 592 ~~d~p~------------------------------s~~~y~Qr~GRagR~G~~G~~~~~~~~ 624 (693)
...+|. ....+.|.+||+-|.-++.-++++++.
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 877763 233456999999997655556666653
No 155
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.47 E-value=1.3e-11 Score=141.80 Aligned_cols=117 Identities=20% Similarity=0.300 Sum_probs=82.0
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhC-CCceEEecCCCCHHHHHHHHHHHh----cCCCcEEEEeCcccccCCCCC--CCE
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCET-EIATTSIHGSRLQSQREQAIHDFK----TKKMKVLVATAVASRGLDIKG--IRH 589 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~-~~~v~~lhg~~~~~~R~~~~~~F~----~g~~~ILVaT~v~~~GiDip~--v~~ 589 (693)
..+++|||+++.+..+.++..|... +.. ...++. ..|.++++.|+ .++..||++|..+.+|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 4556899999999999999998643 333 334554 35677887776 467789999999999999987 788
Q ss_pred EEEcCCCC----C--------------------------hhhhhhhhcccccCCCcceEEEEeCCCC-chHHHHHHHHH
Q psy1604 590 VINYDLPQ----E--------------------------IDEYVHRIGRTGRVGNKGRATSFYDPDQ-DGAIAKDLVRI 637 (693)
Q Consensus 590 VI~~d~p~----s--------------------------~~~y~Qr~GRagR~G~~G~~~~~~~~~~-d~~~~~~l~~~ 637 (693)
||...+|. + ...+.|.+||.-|..++--+++++++.- ...+-+.+.+.
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~s 687 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDA 687 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHh
Confidence 99887763 1 1124589999999866655666666442 23334444443
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=1.1e-11 Score=143.52 Aligned_cols=128 Identities=19% Similarity=0.223 Sum_probs=88.9
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhCCC-------ceEEecCCCCHHHHHHHHHHHhc----CCCcEEEEe--CcccccC
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCETEI-------ATTSIHGSRLQSQREQAIHDFKT----KKMKVLVAT--AVASRGL 582 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~~~-------~v~~lhg~~~~~~R~~~~~~F~~----g~~~ILVaT--~v~~~Gi 582 (693)
..++.+|||++|....+.+.+.+...+. .....-+ ....+++.+++.|+. ++-.||+|+ ..+++||
T Consensus 520 ~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGI 598 (705)
T TIGR00604 520 IIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGI 598 (705)
T ss_pred cCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcc
Confidence 4568899999999999999988875432 1122222 222578889999964 455699999 8899999
Q ss_pred CCCC--CCEEEEcCCCC-Ch------------------------------hhhhhhhcccccCCCcceEEEEeCCCCchH
Q psy1604 583 DIKG--IRHVINYDLPQ-EI------------------------------DEYVHRIGRTGRVGNKGRATSFYDPDQDGA 629 (693)
Q Consensus 583 Dip~--v~~VI~~d~p~-s~------------------------------~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~ 629 (693)
|+++ ++.||.+++|. ++ ....|.+||+-|.-++--++++++..-..
T Consensus 599 Df~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R~~~- 677 (705)
T TIGR00604 599 DFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKRYAR- 677 (705)
T ss_pred ccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehhcCC-
Confidence 9987 78899999885 11 12349999999986666667777633211
Q ss_pred HHHHHHHHHHHcCCCchhHHhccCC
Q psy1604 630 IAKDLVRILEQAGQPVPEFLKFGGG 654 (693)
Q Consensus 630 ~~~~l~~~l~~~~~~vp~~l~~~~~ 654 (693)
.+....+|.|+...-.
T Consensus 678 ---------~~~~~~lp~W~~~~~~ 693 (705)
T TIGR00604 678 ---------SNKRKKLPKWIQDTIQ 693 (705)
T ss_pred ---------cchhhhcCHHHHhhcc
Confidence 1123567888776543
No 157
>KOG1015|consensus
Probab=99.45 E-value=2.6e-12 Score=140.60 Aligned_cols=120 Identities=23% Similarity=0.271 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhC----------------------CCceEEecCCCCHHHHH
Q psy1604 503 QQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCET----------------------EIATTSIHGSRLQSQRE 558 (693)
Q Consensus 503 ~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~----------------------~~~v~~lhg~~~~~~R~ 558 (693)
..|+..|+++|+. .-+.+.|||.++....+.|..+|... |.....|.|..+..+|+
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 3566778888875 56789999999999999999998532 34577889999999999
Q ss_pred HHHHHHhcCC----CcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEe
Q psy1604 559 QAIHDFKTKK----MKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFY 622 (693)
Q Consensus 559 ~~~~~F~~g~----~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~ 622 (693)
...+.|.+-. .-.||+|.+.+.|||+-.++.||.||..|+|+--.|.+=|+.|+||.--||++-
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 9999998632 237999999999999999999999999999999999999999999998888764
No 158
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.40 E-value=7.6e-11 Score=124.83 Aligned_cols=297 Identities=21% Similarity=0.292 Sum_probs=192.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHHhcCC-Cee----EEEEeC---------------CCChHHHHHHHh---------
Q psy1604 272 CAQPEVIICAPTRELVMQIHEVACKYAYSS-VLK----ICLHYG---------------GASSMHFNRQLE--------- 322 (693)
Q Consensus 272 ~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~-~l~----~~~~~g---------------g~~~~~~~~~~~--------- 322 (693)
-.+|+||||+|+|..|.++.+.+.++.... .+. ...-+| ......+.....
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 567999999999999999998887765431 000 000011 111112222211
Q ss_pred ---------------cCCcEEEechhhHHHHHhc------CCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCC-
Q psy1604 323 ---------------KGCNILVATMGRLKDILDR------GRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPD- 380 (693)
Q Consensus 323 ---------------~~~~IlV~Tp~~L~~~l~~------~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~- 380 (693)
.+.|||||+|=-|...+.. ....|+++.++|+|-||.|+-.+ +..+..++.++..++
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPK 193 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCC
Confidence 1489999999999888864 22358999999999999887443 555555555433322
Q ss_pred -------------------CCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcC
Q psy1604 381 -------------------VANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG 441 (693)
Q Consensus 381 -------------------~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~ 441 (693)
..-+|+|++|+...+++..+.........+.+. ..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~--------------~~------------ 247 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVR--------------LK------------ 247 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEE--------------Ee------------
Confidence 124699999999888777665443111100000 00
Q ss_pred cccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccc-------hhHH----HHHH
Q psy1604 442 FLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPK-------QQKK----KKLL 510 (693)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~k~----~~L~ 510 (693)
..+-. .+........+.|.+...+. +.+. ..++
T Consensus 248 ----------------------------------~~~~~--~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iL 291 (442)
T PF06862_consen 248 ----------------------------------PPYEA--SGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKIL 291 (442)
T ss_pred ----------------------------------ecccc--ceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHH
Confidence 00000 01111222233343333221 1222 2233
Q ss_pred HHHh-ccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcc--cccCCCCCC
Q psy1604 511 ELLR-EKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVA--SRGLDIKGI 587 (693)
Q Consensus 511 ~~l~-~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~--~~GiDip~v 587 (693)
-.+. .....++|||+++.-+--.|..+|++.++....+|-..++.+-..+-..|..|+.+||+.|.-+ -+-..|.++
T Consensus 292 P~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi 371 (442)
T PF06862_consen 292 PQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGI 371 (442)
T ss_pred HHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCC
Confidence 3333 5567889999999999999999999999999999999999999999999999999999999754 356788999
Q ss_pred CEEEEcCCCCChhhhhhhhcccccCCC------cceEEEEeCCCCchHHHH
Q psy1604 588 RHVINYDLPQEIDEYVHRIGRTGRVGN------KGRATSFYDPDQDGAIAK 632 (693)
Q Consensus 588 ~~VI~~d~p~s~~~y~Qr~GRagR~G~------~G~~~~~~~~~~d~~~~~ 632 (693)
.+||+|.+|..+.-|...+.-...... ...|.++|+. -|.-.++
T Consensus 372 ~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk-~D~~~LE 421 (442)
T PF06862_consen 372 RHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK-YDALRLE 421 (442)
T ss_pred cEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH-hHHHHHH
Confidence 999999999999988877755544432 5789999984 3443333
No 159
>KOG0951|consensus
Probab=99.38 E-value=2.1e-11 Score=137.68 Aligned_cols=310 Identities=17% Similarity=0.193 Sum_probs=189.9
Q ss_pred CCCHHHHhhhhhhhc-CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH-HHH
Q psy1604 220 KPTPIQKYAIPAGLE-GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA-CKY 297 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~-g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~-~~~ 297 (693)
...|+|.++++.+.+ +.++++.+|+|||||+++.++++. + ....++++++|.-+.+..++..+ ++|
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----~-------~~~~~~vyi~p~~~i~~~~~~~w~~~f 1210 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----P-------DTIGRAVYIAPLEEIADEQYRDWEKKF 1210 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----C-------ccceEEEEecchHHHHHHHHHHHHHhh
Confidence 348999999999885 568999999999999999888875 1 33458999999999887766554 567
Q ss_pred hcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHH------HHH
Q psy1604 298 AYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGD------IQH 371 (693)
Q Consensus 298 ~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~------i~~ 371 (693)
....++.+..+.|..+.+.. +....+|+|+||+++-.+ + ..+++++.|.||.|.+.+.. ... ++.
T Consensus 1211 ~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ 1281 (1674)
T KOG0951|consen 1211 SKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRY 1281 (1674)
T ss_pred ccccCceEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccC-CceEEEEeeHHH
Confidence 66778888888777665543 334579999999998665 2 56889999999999876321 111 111
Q ss_pred HhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhh
Q psy1604 372 VMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQ 451 (693)
Q Consensus 372 i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 451 (693)
|-... ..+.+++.+|..+.+.-.-+. .
T Consensus 1282 ia~q~----~k~ir~v~ls~~lana~d~ig-----~-------------------------------------------- 1308 (1674)
T KOG0951|consen 1282 IASQL----EKKIRVVALSSSLANARDLIG-----A-------------------------------------------- 1308 (1674)
T ss_pred HHHHH----HhheeEEEeehhhccchhhcc-----c--------------------------------------------
Confidence 11110 013445555554332100000 0
Q ss_pred cccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChH
Q psy1604 452 HSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIR 529 (693)
Q Consensus 452 ~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~ 529 (693)
..+.... ++...+..++.+.+......... .......+..+..+.. ..+++.+||+++++
T Consensus 1309 -------s~~~v~N----f~p~~R~~Pl~i~i~~~~~~~~~-------~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk 1370 (1674)
T KOG0951|consen 1309 -------SSSGVFN----FSPSVRPVPLEIHIQSVDISHFE-------SRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRK 1370 (1674)
T ss_pred -------cccceee----cCcccCCCceeEEEEEeccchhH-------HHHHHhhhhHHHHHHHHhcCCCCeEEEeccch
Confidence 0000000 00001112222221111100000 0000111112222222 46778999999999
Q ss_pred hHHHHHHHHhhC----------------------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCC
Q psy1604 530 NADFIACYLCET----------------------EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGI 587 (693)
Q Consensus 530 ~a~~l~~~L~~~----------------------~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v 587 (693)
+|..++.-|-.. ..+..+-|-+++..+...+-..|..|.+.|+|...- ..|+-...
T Consensus 1371 ~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~- 1448 (1674)
T KOG0951|consen 1371 HARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA- 1448 (1674)
T ss_pred hhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-
Confidence 998776543110 122222388999999999999999999999988866 67777643
Q ss_pred CEEEE-----cC------CCCChhhhhhhhcccccCCCcceEEEEeCCCC
Q psy1604 588 RHVIN-----YD------LPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQ 626 (693)
Q Consensus 588 ~~VI~-----~d------~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~ 626 (693)
+.||. || .+.+.+..+|+.|+|.|+ |.|+++....+
T Consensus 1449 ~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~ 1495 (1674)
T KOG0951|consen 1449 HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPK 1495 (1674)
T ss_pred eEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCch
Confidence 44443 33 345688999999999994 79999987543
No 160
>KOG0921|consensus
Probab=99.36 E-value=5.3e-12 Score=137.93 Aligned_cols=353 Identities=14% Similarity=0.150 Sum_probs=204.4
Q ss_pred HHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCee
Q psy1604 225 QKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLK 304 (693)
Q Consensus 225 Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~ 304 (693)
-...+..+..+.-+++-..||+|||..+.-.+|+.++.+.... ...+.+.-|+|..++.+.+.+.+-... .
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~------~~na~v~qprrisaisiaerva~er~e---~ 453 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA------SFNAVVSQPRRISAISLAERVANERGE---E 453 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc------cccceeccccccchHHHHHHHHHhhHH---h
Confidence 3445556666778899999999999999999999998876532 235788889998888877766442111 0
Q ss_pred EEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCc
Q psy1604 305 ICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANR 384 (693)
Q Consensus 305 ~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~ 384 (693)
+.... +.+...........-.|+.||-+.+++.+... +..+.++|+||.|.- ....++..++.......+++.
T Consensus 454 ~g~tv-gy~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiher---dv~~dfll~~lr~m~~ty~dl 526 (1282)
T KOG0921|consen 454 VGETC-GYNVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHER---DVDTDFVLIVLREMISTYRDL 526 (1282)
T ss_pred hcccc-cccccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhh---ccchHHHHHHHHhhhccchhh
Confidence 00011 11111111111223579999999999988865 457789999999943 334444555544445556678
Q ss_pred ceEEeeccCchhHHhhhhhhh-----hhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHH--hhcccCCc
Q psy1604 385 QTLMFSATFPETIQKKGCNIL-----VATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHV--MQHSTMPD 457 (693)
Q Consensus 385 q~lllSAT~~~~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~ 457 (693)
+++++|||+..+......... ....-.....+. .+-...+....-....... ..+.....
T Consensus 527 ~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~l-------------ed~~~~~~~vp~~~~~~k~k~~~~~~~~~ 593 (1282)
T KOG0921|consen 527 RVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFL-------------EDIIQMTQFVPSEPSQKKRKKDDDEEDEE 593 (1282)
T ss_pred hhhhhhcccchhhhhhhhccccceeeccccccHHHHHH-------------HHhhhhhhccCCCcCccchhhcccccCch
Confidence 889999997654333211110 000000000000 0000000000000000000 00000000
Q ss_pred cccccceeecccCchhhhcceEEEEeecccccccceeEEEEEcc----chhHHHHHHHHHhc-cCCCcEEEEecChHhHH
Q psy1604 458 VANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVP----KQQKKKKLLELLRE-KDEDGVIVFVSTIRNAD 532 (693)
Q Consensus 458 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~k~~~L~~~l~~-~~~~kvLVF~~s~~~a~ 532 (693)
..+ -.+++-. ......+........... ...-.+.++..+.. .-.+-+++|.+.+...-
T Consensus 594 ~dd-------------K~~n~n~---~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~ 657 (1282)
T KOG0921|consen 594 VDD-------------KGRNMNI---LCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIM 657 (1282)
T ss_pred hhh-------------ccccccc---ccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhh
Confidence 000 0000000 000000000000001111 11223333333332 45667999999999999
Q ss_pred HHHHHHhhC-------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCC---------
Q psy1604 533 FIACYLCET-------EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLP--------- 596 (693)
Q Consensus 533 ~l~~~L~~~-------~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p--------- 596 (693)
.|..+|... .+.+..+|+.+...++.++++....|..+++++|.+++..|.|.++.+||..+.-
T Consensus 658 ~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~n 737 (1282)
T KOG0921|consen 658 TLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHN 737 (1282)
T ss_pred hhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeecccc
Confidence 999988553 4678999999999999999999999999999999999999999998888864422
Q ss_pred ---------CChhhhhhhhcccccCCCcceEEEEeC
Q psy1604 597 ---------QEIDEYVHRIGRTGRVGNKGRATSFYD 623 (693)
Q Consensus 597 ---------~s~~~y~Qr~GRagR~G~~G~~~~~~~ 623 (693)
.|....+||.||+||. ++|.|+.+..
T Consensus 738 n~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 738 NMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred ceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 3667789999999998 8999988754
No 161
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.31 E-value=4.5e-11 Score=134.84 Aligned_cols=136 Identities=10% Similarity=0.043 Sum_probs=91.1
Q ss_pred ccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHH----H
Q psy1604 242 AQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMH----F 317 (693)
Q Consensus 242 a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~----~ 317 (693)
+-+|||||.+|+-.+-+.+. . +..+|||+|...|+.|+.+.+++... ...+..++.+.+..+ |
T Consensus 167 ~~~GSGKTevyl~~i~~~l~-~----------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLR-A----------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHH-c----------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH
Confidence 33699999998776655543 2 34699999999999999999988753 134666777766543 3
Q ss_pred HHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhC---CchHHHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 318 NRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDM---GFLGDIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 318 ~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~---~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
.+......+|+|+|...+. ..+.++.+|||||-|.-.-. ..+...+.+... .....+..+|+-|||++
T Consensus 234 ~~~~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~--Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 234 LAVLRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALL--RAHQHGCALLIGGHART 304 (665)
T ss_pred HHHhCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHH--HHHHcCCcEEEECCCCC
Confidence 3333446899999997773 47899999999999943211 112122222111 01123678999999987
Q ss_pred hhHHh
Q psy1604 395 ETIQK 399 (693)
Q Consensus 395 ~~~~~ 399 (693)
-+...
T Consensus 305 les~~ 309 (665)
T PRK14873 305 AEAQA 309 (665)
T ss_pred HHHHH
Confidence 66544
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.28 E-value=3.1e-11 Score=125.93 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=92.5
Q ss_pred HHHhhhhhhh-------------cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHH
Q psy1604 224 IQKYAIPAGL-------------EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQI 290 (693)
Q Consensus 224 ~Q~~ai~~il-------------~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 290 (693)
||.+++..++ ..+..+++.++|+|||+..+. ++..+...... .....+|||||. .+..||
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~~-----~~~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIA-LISYLKNEFPQ-----RGEKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHH-HHHHHHHCCTT-----SS-S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhh-hhhhhhhcccc-----ccccceeEeecc-chhhhh
Confidence 5666666553 346899999999999998554 44444443221 111248999999 888999
Q ss_pred HHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhc---CCcCCCceeEEEEccchhhhhCCchH
Q psy1604 291 HEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDR---GRISLASVRFVVLDEADRMLDMGFLG 367 (693)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~---~~~~l~~~~~lVlDEah~l~~~~~~~ 367 (693)
..++.++.....+++..+.+...............+++|+|++.+...... ..+.-.++++||+||+|.+.+. ..
T Consensus 74 ~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s 151 (299)
T PF00176_consen 74 KEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DS 151 (299)
T ss_dssp HHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TS
T ss_pred hhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cc
Confidence 999999986555666666555412222222234689999999999811000 0111245899999999999533 33
Q ss_pred HHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 368 DIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 368 ~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
.....+.... ...++++|||+-
T Consensus 152 ~~~~~l~~l~-----~~~~~lLSgTP~ 173 (299)
T PF00176_consen 152 KRYKALRKLR-----ARYRWLLSGTPI 173 (299)
T ss_dssp HHHHHHHCCC-----ECEEEEE-SS-S
T ss_pred cccccccccc-----cceEEeeccccc
Confidence 3333333322 667899999963
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.21 E-value=7.6e-10 Score=123.17 Aligned_cols=321 Identities=16% Similarity=0.215 Sum_probs=177.4
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSM 315 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 315 (693)
.-.++.+|+|||||.+. +..+...+..+ ..++|+++-+++|+.+....++..... ++. .|.+....
T Consensus 50 ~V~vVRSpMGTGKTtaL-i~wLk~~l~~~---------~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~ 115 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTAL-IRWLKDALKNP---------DKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDY 115 (824)
T ss_pred CeEEEECCCCCCcHHHH-HHHHHHhccCC---------CCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccc
Confidence 45688899999999984 44454443322 237999999999999999988775321 111 11111111
Q ss_pred HHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHH------HHHhccCCCCCCCCcceEEe
Q psy1604 316 HFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDI------QHVMQHSTMPDVANRQTLMF 389 (693)
Q Consensus 316 ~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i------~~i~~~~~~~~~~~~q~lll 389 (693)
.. -....+-+++..+.|.++.. -.+.++++|||||+-..+..-+.+.+ ..++.... .....+|++
T Consensus 116 ~i---~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI---~~ak~VI~~ 186 (824)
T PF02399_consen 116 II---DGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELI---RNAKTVIVM 186 (824)
T ss_pred cc---cccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHH---HhCCeEEEe
Confidence 00 01235678888888876532 13567999999999987754222221 12222111 136689999
Q ss_pred eccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeeccc
Q psy1604 390 SATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSAT 469 (693)
Q Consensus 390 SAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 469 (693)
-|++....-++...+- ....+.++..+-. .....+++..+....
T Consensus 187 DA~ln~~tvdFl~~~R----------------p~~~i~vI~n~y~--------------------~~~fs~R~~~~~~~l 230 (824)
T PF02399_consen 187 DADLNDQTVDFLASCR----------------PDENIHVIVNTYA--------------------SPGFSNRRCTFLRSL 230 (824)
T ss_pred cCCCCHHHHHHHHHhC----------------CCCcEEEEEeeee--------------------cCCcccceEEEeccc
Confidence 9999877666544430 0011111111100 001111111111111
Q ss_pred CchhhhcceE----EEEeecc-cccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCc
Q psy1604 470 FPETIQKNYI----FIAVGII-GGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIA 544 (693)
Q Consensus 470 ~~~~l~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~ 544 (693)
-.+.+....- ....... ..................-...|..-| ..++++-||+++...++.+++........
T Consensus 231 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L--~~gknIcvfsSt~~~~~~v~~~~~~~~~~ 308 (824)
T PF02399_consen 231 GTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARL--NAGKNICVFSSTVSFAEIVARFCARFTKK 308 (824)
T ss_pred CcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHH--hCCCcEEEEeChHHHHHHHHHHHHhcCCe
Confidence 1010000000 0000000 000011111111122222333344333 34667889999999999999999888888
Q ss_pred eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCC--CEEEEcCCC----CChhhhhhhhcccccCCCcceE
Q psy1604 545 TTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGI--RHVINYDLP----QEIDEYVHRIGRTGRVGNKGRA 618 (693)
Q Consensus 545 v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v--~~VI~~d~p----~s~~~y~Qr~GRagR~G~~G~~ 618 (693)
+..+++..+..+. +.| ++.+|++-|++...|+++... +-|+-|=-| .+..+..|++||.-.. .....
T Consensus 309 Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei 381 (824)
T PF02399_consen 309 VLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEI 381 (824)
T ss_pred EEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeE
Confidence 9999887666532 222 568999999999999999653 335544223 2455689999999665 56677
Q ss_pred EEEeCC
Q psy1604 619 TSFYDP 624 (693)
Q Consensus 619 ~~~~~~ 624 (693)
+++++.
T Consensus 382 ~v~~d~ 387 (824)
T PF02399_consen 382 YVYIDA 387 (824)
T ss_pred EEEEec
Confidence 777764
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.15 E-value=2.2e-10 Score=101.45 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=81.1
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGAS 313 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~ 313 (693)
+|+-.++-..+|+|||.-.+--++...+.. +.++|||.|||.++..+.+.++.. .+++... -..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~--~~~ 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR----------RLRVLVLAPTRVVAEEMYEALKGL----PVRFHTN--ARM 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHTTTS----SEEEEST--TSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc----------cCeEEEecccHHHHHHHHHHHhcC----CcccCce--eee
Confidence 455678889999999987565566655544 347999999999999988877543 2332211 110
Q ss_pred hHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCC--chHHHHHHhccCCCCCCCCcceEEeec
Q psy1604 314 SMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG--FLGDIQHVMQHSTMPDVANRQTLMFSA 391 (693)
Q Consensus 314 ~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~--~~~~i~~i~~~~~~~~~~~~q~lllSA 391 (693)
.....+.-|-++|+..+.+++.+ .....++++||+||||-+-... +...+...-. .....+|++||
T Consensus 67 -----~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~------~g~~~~i~mTA 134 (148)
T PF07652_consen 67 -----RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE------SGEAKVIFMTA 134 (148)
T ss_dssp ---------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH------TTS-EEEEEES
T ss_pred -----ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhh------ccCeeEEEEeC
Confidence 12234567889999999888766 5567899999999999652111 1111122111 12357899999
Q ss_pred cCchhH
Q psy1604 392 TFPETI 397 (693)
Q Consensus 392 T~~~~~ 397 (693)
|+|...
T Consensus 135 TPPG~~ 140 (148)
T PF07652_consen 135 TPPGSE 140 (148)
T ss_dssp S-TT--
T ss_pred CCCCCC
Confidence 998754
No 165
>KOG2340|consensus
Probab=99.15 E-value=6.1e-10 Score=115.96 Aligned_cols=360 Identities=22% Similarity=0.261 Sum_probs=210.0
Q ss_pred CCCCCCHHHHhhhhhhhcCCCEEEEc-cCCCCh--hHHHHHHHHHHhhcCCC-------C-------------cccCCCC
Q psy1604 217 NYTKPTPIQKYAIPAGLEGRDLMGCA-QTGSGK--TAAFLIPIMHHLLESPG-------E-------------LVTGYCA 273 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~g~~vlv~a-~TGsGK--Tl~~ll~il~~l~~~~~-------~-------------~~~~~~~ 273 (693)
.-..+|+.|.+.+....+-+|++.-- ..+.|+ +-.|++.+++++++... . ....-..
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 34578999999999988889987642 224555 56688889988875321 0 0001145
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCe-e--------EEEEeCC---------------------CChHHH------
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVL-K--------ICLHYGG---------------------ASSMHF------ 317 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l-~--------~~~~~gg---------------------~~~~~~------ 317 (693)
+|+||||||+|+-|..+.+.+..+.....- + ..--|++ ...+..
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 789999999999999999998887433221 0 0001111 111100
Q ss_pred ----HHHH--hcCCcEEEechhhHHHHHhcC------CcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCC----
Q psy1604 318 ----NRQL--EKGCNILVATMGRLKDILDRG------RISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDV---- 381 (693)
Q Consensus 318 ----~~~~--~~~~~IlV~Tp~~L~~~l~~~------~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~---- 381 (693)
.+.. -...||+||+|=-|.-.+... .-.++++.++|||-||-|+..+ +..+..|+.++...+.
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccC
Confidence 0001 125899999998888777521 1247889999999999998655 4556666655432211
Q ss_pred ----------------CCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccc
Q psy1604 382 ----------------ANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGD 445 (693)
Q Consensus 382 ----------------~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 445 (693)
.-+|+++||+--......+.........++... ........+..+.+.
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~---~~~~~~gsi~~v~~~------------- 515 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKA---RNLQSGGSISNVGIP------------- 515 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeee---ccccCCCchhhccch-------------
Confidence 124666776664444433332221111111000 000000000000000
Q ss_pred hhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHH----HHHHHHHhccCCCcE
Q psy1604 446 IQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKK----KKLLELLREKDEDGV 521 (693)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~----~~L~~~l~~~~~~kv 521 (693)
+.+.+..+.+..... ....+. ..++--+.......+
T Consensus 516 ----------------------------l~Qvf~ri~~~si~~------------~~D~RFkyFv~~ImPq~~k~t~s~~ 555 (698)
T KOG2340|consen 516 ----------------------------LCQVFQRIEVKSIIE------------TPDARFKYFVDKIMPQLIKRTESGI 555 (698)
T ss_pred ----------------------------hhhhhhheeccCccc------------CchHHHHHHHHhhchhhcccccCce
Confidence 001111111110000 001111 222222222345668
Q ss_pred EEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcc--cccCCCCCCCEEEEcCCCCCh
Q psy1604 522 IVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVA--SRGLDIKGIRHVINYDLPQEI 599 (693)
Q Consensus 522 LVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~--~~GiDip~v~~VI~~d~p~s~ 599 (693)
||+.++.-+--++..++++..+....+|--.++..-..+-+.|-.|...+|+-|.-+ -+--+|.+|..||+|.+|.+|
T Consensus 556 LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P 635 (698)
T KOG2340|consen 556 LIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNP 635 (698)
T ss_pred EEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCc
Confidence 999999999889999999888777777766566666677788999999999999765 467899999999999999987
Q ss_pred hhh---hhhhcccccCCC----cceEEEEeCCCCchHHHHHH
Q psy1604 600 DEY---VHRIGRTGRVGN----KGRATSFYDPDQDGAIAKDL 634 (693)
Q Consensus 600 ~~y---~Qr~GRagR~G~----~G~~~~~~~~~~d~~~~~~l 634 (693)
.-| +.+.+|+.-.|+ .-.|.++|+ .-|.-.+..+
T Consensus 636 ~FYsEiinm~~k~~~~gn~d~d~~t~~ilyt-KyD~i~Le~i 676 (698)
T KOG2340|consen 636 HFYSEIINMSDKTTSQGNTDLDIFTVRILYT-KYDRIRLENI 676 (698)
T ss_pred HHHHHHHhhhhhhhccCCccccceEEEEEee-chhhHHHHHh
Confidence 766 466666654442 346778887 4444444444
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.08 E-value=1.4e-09 Score=111.70 Aligned_cols=73 Identities=23% Similarity=0.176 Sum_probs=57.5
Q ss_pred CCCHHHHhhh----hhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAI----PAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 220 ~p~~~Q~~ai----~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
.|+|.|.+.+ ..+.++.++++.||||+|||+++++|++..+...+.. ....+++++++|..+..|....++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHHHH
Confidence 4699999944 4555788999999999999999999999877654321 123479999999999998877776
Q ss_pred HH
Q psy1604 296 KY 297 (693)
Q Consensus 296 ~~ 297 (693)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.08 E-value=1.4e-09 Score=111.70 Aligned_cols=73 Identities=23% Similarity=0.176 Sum_probs=57.5
Q ss_pred CCCHHHHhhh----hhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAI----PAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 220 ~p~~~Q~~ai----~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
.|+|.|.+.+ ..+.++.++++.||||+|||+++++|++..+...+.. ....+++++++|..+..|....++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHHHH
Confidence 4699999944 4555788999999999999999999999877654321 123479999999999998877776
Q ss_pred HH
Q psy1604 296 KY 297 (693)
Q Consensus 296 ~~ 297 (693)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 168
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.05 E-value=6.5e-09 Score=116.66 Aligned_cols=406 Identities=17% Similarity=0.193 Sum_probs=218.9
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
+|+++|.-.- +.-+..-++-+.||-|||+++.+|+.-..+.. ..+.++...--||.--.+++..+..
T Consensus 80 ~~~dVQliG~--i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~g-----------kgVhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 80 RHFDVQLLGG--IVLHLGDIAEMRTGEGKTLVATLPAYLNALAG-----------KGVHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred ChhhHHHhhh--hhhcCCceeeeecCCchHHHHHHHHHHHhcCC-----------CCcEEeeehHHhhhhCHHHHHHHHH
Confidence 4556665544 33445568899999999999999987554433 3478888888999998999999888
Q ss_pred CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcCC------cCCCceeEEEEccchhhhhC---------
Q psy1604 300 SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRGR------ISLASVRFVVLDEADRMLDM--------- 363 (693)
Q Consensus 300 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~l~~~--------- 363 (693)
..++.+.+...+.+.......+ .|||.++|-..| .++++.+. .....+.+-|+||+|.++=.
T Consensus 147 ~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiIS 224 (822)
T COG0653 147 FLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIIS 224 (822)
T ss_pred HcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeee
Confidence 8999999998888766554433 689999998877 44443321 12346889999999976511
Q ss_pred -------CchHHHHHHhccCC----CCCCCCcceEEeecc-CchhHHhhh--hhhh---hhchhhhHHHHhhccccccce
Q psy1604 364 -------GFLGDIQHVMQHST----MPDVANRQTLMFSAT-FPETIQKKG--CNIL---VATMGRLKDILDRGRISLASV 426 (693)
Q Consensus 364 -------~~~~~i~~i~~~~~----~~~~~~~q~lllSAT-~~~~~~~~~--~~~~---~~~~~~l~~~l~~~~~~~~~~ 426 (693)
..+..+..+...+. +.-....+.+.++-. +......+. ..+- ....-.+...+....+...+.
T Consensus 225 G~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~ 304 (822)
T COG0653 225 GPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDV 304 (822)
T ss_pred cccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCC
Confidence 11222233221111 000112222332221 111111010 0000 011111233334444445555
Q ss_pred eEEEechhhh---------hhhcCcccchhHHhhcccCCccccccceeecccCchh--------------------hhcc
Q psy1604 427 RFVVLDEADR---------MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPET--------------------IQKN 477 (693)
Q Consensus 427 ~~~~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~--------------------l~~~ 477 (693)
.|++-+..-. +....+...+........--........+.+.|+-.- +..-
T Consensus 305 dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~i 384 (822)
T COG0653 305 DYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVI 384 (822)
T ss_pred eeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhc
Confidence 5554432210 0111111111111111111111111111111111000 0001
Q ss_pred eEEEEeeccccccc---ceeEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCC
Q psy1604 478 YIFIAVGIIGGAST---DVVQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSR 552 (693)
Q Consensus 478 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~ 552 (693)
|-...+ ......+ .-.....+.....|...+++.+.. ..+.|+||-+.+....+.+.+.|.+.+++..++...-
T Consensus 385 Y~l~vv-~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~ 463 (822)
T COG0653 385 YGLDVV-VIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKN 463 (822)
T ss_pred cCCcee-eccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeecccc
Confidence 100000 0000000 000111223346777777777765 6788999999999999999999999999998888875
Q ss_pred CHHHHHHHHHHHhcCCC-cEEEEeCcccccCCCCCCC-----------EEEEcCCCCChhhhhhhhcccccCCCcceEEE
Q psy1604 553 LQSQREQAIHDFKTKKM-KVLVATAVASRGLDIKGIR-----------HVINYDLPQEIDEYVHRIGRTGRVGNKGRATS 620 (693)
Q Consensus 553 ~~~~R~~~~~~F~~g~~-~ILVaT~v~~~GiDip~v~-----------~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~ 620 (693)
...+-+.+-. .|+. -|-|||++++||-||.--. +||-...-.|..---|-.||+||.|-+|.+-.
T Consensus 464 h~~EA~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F 540 (822)
T COG0653 464 HAREAEIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRF 540 (822)
T ss_pred HHHHHHHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhh
Confidence 4333333332 3444 4679999999999994222 34444333344444499999999999999888
Q ss_pred EeCCCCchHHHHHHHHHHHHcCCCchhHHhcc
Q psy1604 621 FYDPDQDGAIAKDLVRILEQAGQPVPEFLKFG 652 (693)
Q Consensus 621 ~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~ 652 (693)
|++.++ ++.+.+.. ..++..|+.+
T Consensus 541 ~lSleD------~L~r~F~~--d~~~~~~~~l 564 (822)
T COG0653 541 YLSLED------DLMRRFAS--DRLPALMDKL 564 (822)
T ss_pred hhhhHH------HHHHHhcc--hhhHHHHHhh
Confidence 887443 23333332 4555556555
No 169
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.93 E-value=1.7e-07 Score=110.90 Aligned_cols=137 Identities=20% Similarity=0.232 Sum_probs=92.4
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSM 315 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 315 (693)
+.-+|+--||||||++ ++.+.+.+... ...++++||+.++.|-.|+.+.+..+........ ...+..
T Consensus 274 ~~G~IWHtqGSGKTlT-m~~~A~~l~~~--------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~ 340 (962)
T COG0610 274 KGGYIWHTQGSGKTLT-MFKLARLLLEL--------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTS 340 (962)
T ss_pred CceEEEeecCCchHHH-HHHHHHHHHhc--------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHH
Confidence 4689999999999998 44455555554 2456899999999999999999999875433211 344555
Q ss_pred HHHHHHhcC-CcEEEechhhHHHHHhcCC-cCCCc-eeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeecc
Q psy1604 316 HFNRQLEKG-CNILVATMGRLKDILDRGR-ISLAS-VRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSAT 392 (693)
Q Consensus 316 ~~~~~~~~~-~~IlV~Tp~~L~~~l~~~~-~~l~~-~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT 392 (693)
+..+.+... ..|+|+|.+.|...+.... ..+.+ ==+||+|||||--.-.....+...+ ++...++||+|
T Consensus 341 ~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~~~~~--------~~a~~~gFTGT 412 (962)
T COG0610 341 ELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLLKKAL--------KKAIFIGFTGT 412 (962)
T ss_pred HHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHHHHHh--------ccceEEEeeCC
Confidence 566666644 4899999999988876541 11222 2378889999752111111222222 24678999999
Q ss_pred C
Q psy1604 393 F 393 (693)
Q Consensus 393 ~ 393 (693)
|
T Consensus 413 P 413 (962)
T COG0610 413 P 413 (962)
T ss_pred c
Confidence 7
No 170
>KOG1016|consensus
Probab=98.78 E-value=2e-07 Score=101.18 Aligned_cols=107 Identities=17% Similarity=0.264 Sum_probs=91.0
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCC------------------CceEEecCCCCHHHHHHHHHHHhcCC-C--cEEEEe
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETE------------------IATTSIHGSRLQSQREQAIHDFKTKK-M--KVLVAT 575 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~------------------~~v~~lhg~~~~~~R~~~~~~F~~g~-~--~ILVaT 575 (693)
.+.++|||.......+.|.+.|.... .....+.|..+..+|++.+++|.+-- + -+|++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 45689999999999999999886642 23456778888999999999998632 2 478889
Q ss_pred CcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeC
Q psy1604 576 AVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYD 623 (693)
Q Consensus 576 ~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~ 623 (693)
.....|||+-..+-+|.||.-|++-.-.|.+-|.-|.|++..|+++-.
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 999999999888999999999999999999999999999999998754
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.76 E-value=1.4e-07 Score=94.39 Aligned_cols=129 Identities=21% Similarity=0.205 Sum_probs=97.0
Q ss_pred CCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 218 YTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 218 ~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
-..|++.|.-++-.+..|+ |+...||=|||++..+|+.-..+. +..|-|++.+..||..-++++..+
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~-----------G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ-----------GKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-----------SS-EEEEESSHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh-----------cCCcEEEeccHHHhhccHHHHHHH
Confidence 3489999999998876665 999999999999988887766543 336899999999999999999999
Q ss_pred hcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHH-HHHhcCC------cCCCceeEEEEccchhhh
Q psy1604 298 AYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLK-DILDRGR------ISLASVRFVVLDEADRML 361 (693)
Q Consensus 298 ~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~-~~l~~~~------~~l~~~~~lVlDEah~l~ 361 (693)
....++.+..+..+.+........ .++|+++|...+. ++|+... .....+.++||||+|.++
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999988765433333 4689999999884 4554422 124678999999999875
No 172
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.54 E-value=1e-06 Score=101.43 Aligned_cols=72 Identities=17% Similarity=0.067 Sum_probs=56.7
Q ss_pred HHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCch
Q psy1604 320 QLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPE 395 (693)
Q Consensus 320 ~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~ 395 (693)
.++....|+++||..|...+-.+.+++.++..|||||||++....-+.-+..++.... +..-+.+|||.+..
T Consensus 3 ~ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n----~~gfIkafSdsP~~ 74 (814)
T TIGR00596 3 KVYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKN----KTGFIKAFSDNPEA 74 (814)
T ss_pred hHhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhC----CCcceEEecCCCcc
Confidence 3455678999999999998888999999999999999999987766666666664321 35567888888643
No 173
>KOG1001|consensus
Probab=98.52 E-value=1.8e-07 Score=105.22 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhcc--CC-CcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCC-Cc-EEEEeCc
Q psy1604 503 QQKKKKLLELLREK--DE-DGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKK-MK-VLVATAV 577 (693)
Q Consensus 503 ~~k~~~L~~~l~~~--~~-~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~-~~-ILVaT~v 577 (693)
..|+..+..+|... .. .+++||++....+..+...|...++....+.|.|+...|.+.+..|..+. .+ .+++...
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 45566666666531 11 48999999999999999999988888899999999999999999999544 23 4577889
Q ss_pred ccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEE
Q psy1604 578 ASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATS 620 (693)
Q Consensus 578 ~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~ 620 (693)
...|+|+..+.+|+..|+-||+..-.|.+-|+.|.|+.-.+.+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999998877665
No 174
>KOG1133|consensus
Probab=98.47 E-value=0.00014 Score=79.35 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHhc---cCCCcEEEEecChHhHHHHHHHHhhCCCc-------eEEecCCCCHHHHHHHHHHHh----cCC
Q psy1604 503 QQKKKKLLELLRE---KDEDGVIVFVSTIRNADFIACYLCETEIA-------TTSIHGSRLQSQREQAIHDFK----TKK 568 (693)
Q Consensus 503 ~~k~~~L~~~l~~---~~~~kvLVF~~s~~~a~~l~~~L~~~~~~-------v~~lhg~~~~~~R~~~~~~F~----~g~ 568 (693)
...+..|...+.+ .-++.+++|+++.+-...+.+.+.+.|+- ..++-...+ -+.+++.|. .|.
T Consensus 611 ~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~ 687 (821)
T KOG1133|consen 611 PEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGR 687 (821)
T ss_pred hHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCC
Confidence 3444455444443 44588999999999999999988766532 222222222 345666665 355
Q ss_pred CcEEEEe--CcccccCCCCC--CCEEEEcCCCCC------------------------hh--------hhhhhhcccccC
Q psy1604 569 MKVLVAT--AVASRGLDIKG--IRHVINYDLPQE------------------------ID--------EYVHRIGRTGRV 612 (693)
Q Consensus 569 ~~ILVaT--~v~~~GiDip~--v~~VI~~d~p~s------------------------~~--------~y~Qr~GRagR~ 612 (693)
-.||+|. .-+++|||+.+ ++.||..++|.. .+ ..-|.+|||-|-
T Consensus 688 GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH 767 (821)
T KOG1133|consen 688 GAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRH 767 (821)
T ss_pred CeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677765 56899999976 788998888741 11 123999999998
Q ss_pred CCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhccCCC
Q psy1604 613 GNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKFGGGG 655 (693)
Q Consensus 613 G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~ 655 (693)
-++--++++++.. +.....+ .+|.|+...-..
T Consensus 768 ~~DYA~i~LlD~R----Y~~p~~R-------KLp~WI~~~v~s 799 (821)
T KOG1133|consen 768 RKDYASIYLLDKR----YARPLSR-------KLPKWIRKRVHS 799 (821)
T ss_pred hccceeEEEehhh----hcCchhh-------hccHHHHhHhcc
Confidence 6666677776522 2222222 789999766543
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.43 E-value=2.3e-06 Score=98.66 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=57.3
Q ss_pred CCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCC--Ccc-------eEEEEeCCCCchHHHHHHHHHH
Q psy1604 568 KMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVG--NKG-------RATSFYDPDQDGAIAKDLVRIL 638 (693)
Q Consensus 568 ~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G--~~G-------~~~~~~~~~~d~~~~~~l~~~l 638 (693)
..+.+++.+++.+|-|-|++-.+.-+.-..|...-.|.+||.-|.- +.| ....++.......++..|++-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999988988888999999999998852 222 1234444456677888887776
Q ss_pred HHc
Q psy1604 639 EQA 641 (693)
Q Consensus 639 ~~~ 641 (693)
...
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
No 176
>KOG0952|consensus
Probab=98.31 E-value=1.5e-06 Score=98.18 Aligned_cols=131 Identities=24% Similarity=0.244 Sum_probs=101.6
Q ss_pred CCCHHHHhhhhhhhc-CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 220 KPTPIQKYAIPAGLE-GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~-g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
...|.|.+.+-.+.. ..++++-+|||+|||++|.+.++..+...+ +.++++++|-++|+..-.+...+..
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p---------~~kvvyIap~kalvker~~Dw~~r~ 997 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP---------GSKVVYIAPDKALVKERSDDWSKRD 997 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC---------CccEEEEcCCchhhcccccchhhhc
Confidence 455677777765553 468999999999999999999987776554 3489999999999988777776666
Q ss_pred cCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhc--CCcCCCceeEEEEccchhhhh
Q psy1604 299 YSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDR--GRISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 299 ~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~--~~~~l~~~~~lVlDEah~l~~ 362 (693)
...++++..+.|+...+. .-...++++|+||++.....++ ..-.+.+++.+|+||.|.+.+
T Consensus 998 ~~~g~k~ie~tgd~~pd~---~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 998 ELPGIKVIELTGDVTPDV---KAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred ccCCceeEeccCccCCCh---hheecCceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 556888888888776652 1234579999999999887763 334578999999999997753
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.29 E-value=6.1e-06 Score=82.41 Aligned_cols=74 Identities=24% Similarity=0.278 Sum_probs=50.9
Q ss_pred CCCHHHHhhhhhhhcCCC-EEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLEGRD-LMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~-vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
++.+.|.+|+..+++... .+|.+|.|||||.. +..++..+..... ......+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~--~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFK--SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH---------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchh--hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 467899999999999988 99999999999965 4445555521100 00003455899999999999999988887
No 178
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.25 E-value=3.5e-06 Score=79.44 Aligned_cols=107 Identities=25% Similarity=0.305 Sum_probs=73.9
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhCCC--ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC--cccccCCCCC--CCE
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCETEI--ATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA--VASRGLDIKG--IRH 589 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~~~--~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~--v~~~GiDip~--v~~ 589 (693)
..++++|||+++.+..+.+.+.++.... ....+.. +..++..+++.|+.+.-.||+++. .+++|||+++ ++.
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 3458899999999999999999976532 1122222 356788899999999999999998 9999999986 778
Q ss_pred EEEcCCCCC-h-----------------------------hhhhhhhcccccCCCcceEEEEeCC
Q psy1604 590 VINYDLPQE-I-----------------------------DEYVHRIGRTGRVGNKGRATSFYDP 624 (693)
Q Consensus 590 VI~~d~p~s-~-----------------------------~~y~Qr~GRagR~G~~G~~~~~~~~ 624 (693)
||...+|.. + ....|.+||+-|..++--++++++.
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 999888841 1 1223889999999766666666653
No 179
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.06 E-value=5.2e-05 Score=76.30 Aligned_cols=171 Identities=14% Similarity=0.090 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHhCCCCCCCHHHHhhhhhhh----------cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCC
Q psy1604 204 GLREILVKNLKKSNYTKPTPIQKYAIPAGL----------EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCA 273 (693)
Q Consensus 204 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il----------~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~ 273 (693)
.|++.++.. ..++..|.+++-.+. .+..+++-..||.||-.+..--|+++.++..
T Consensus 27 ~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr--------- 91 (303)
T PF13872_consen 27 HLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR--------- 91 (303)
T ss_pred CCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC---------
Confidence 566655442 246788888876553 2357889999999999876666777776543
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC---CcCC----
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG---RISL---- 346 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~---~~~l---- 346 (693)
.+.|.++.+..|-....+.++.+... .+.+..+..-.. . ....-...|+++|+..|...-..+ ...+
T Consensus 92 -~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~-~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 92 -KRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKY-G---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred -CceEEEECChhhhhHHHHHHHHhCCC-cccceechhhcc-C---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 36899999999999998888887644 233332221000 0 001224579999999987765321 1111
Q ss_pred ----Cce-eEEEEccchhhhhCCch--------HHHHHHhccCCCCCCCCcceEEeeccCchhHHhh
Q psy1604 347 ----ASV-RFVVLDEADRMLDMGFL--------GDIQHVMQHSTMPDVANRQTLMFSATFPETIQKK 400 (693)
Q Consensus 347 ----~~~-~~lVlDEah~l~~~~~~--------~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~ 400 (693)
.++ .+|||||||.+.+.... ..+..+... + ++.+++.+|||-..+..++
T Consensus 166 ~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~--L---P~ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNR--L---PNARVVYASATGASEPRNM 227 (303)
T ss_pred HHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHh--C---CCCcEEEecccccCCCcee
Confidence 122 48999999998765321 122222222 2 3667999999987666554
No 180
>KOG1802|consensus
Probab=98.04 E-value=1.7e-05 Score=85.63 Aligned_cols=77 Identities=26% Similarity=0.276 Sum_probs=61.4
Q ss_pred HHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHH
Q psy1604 212 NLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIH 291 (693)
Q Consensus 212 ~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~ 291 (693)
.+...++.++..-|..|+..+++..-.|+++|+|+|||.+. ..|+.++.+.. ...+||++|+..-+.|++
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvts-a~IVyhl~~~~---------~~~VLvcApSNiAVDqLa 471 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQH---------AGPVLVCAPSNIAVDQLA 471 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehh-HHHHHHHHHhc---------CCceEEEcccchhHHHHH
Confidence 33445777899999999999999999999999999999884 44445554432 236999999999999999
Q ss_pred HHHHHHh
Q psy1604 292 EVACKYA 298 (693)
Q Consensus 292 ~~~~~~~ 298 (693)
+.+.+.+
T Consensus 472 eKIh~tg 478 (935)
T KOG1802|consen 472 EKIHKTG 478 (935)
T ss_pred HHHHhcC
Confidence 8887743
No 181
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.02 E-value=4e-05 Score=73.81 Aligned_cols=60 Identities=25% Similarity=0.273 Sum_probs=41.9
Q ss_pred CCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHH
Q psy1604 218 YTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTREL 286 (693)
Q Consensus 218 ~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 286 (693)
+...++.|+.++.++++..-+++.+|.|||||+.++..+++.+.... ..+++++-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~---------~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE---------YDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS----------SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC---------CcEEEEEecCCCC
Confidence 34568899999999998888999999999999998888888876632 2378888887654
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.00 E-value=9.9e-06 Score=78.50 Aligned_cols=63 Identities=25% Similarity=0.208 Sum_probs=45.4
Q ss_pred CCCHHHHhhhhhhhcCC--CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLEGR--DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~--~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
+|++-|++++..++.+. -+++.++.|+|||.+ +..+...+... +.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~----------g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA----------GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT----------T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC----------CCeEEEECCcHHHHHHHHHh
Confidence 47889999999997543 477889999999986 44555555443 24799999998888876554
No 183
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.99 E-value=0.00027 Score=79.06 Aligned_cols=74 Identities=11% Similarity=0.205 Sum_probs=56.7
Q ss_pred CCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccC--CCcceEEE----------EeCCCCchHHHHHH
Q psy1604 567 KKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRV--GNKGRATS----------FYDPDQDGAIAKDL 634 (693)
Q Consensus 567 g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~--G~~G~~~~----------~~~~~~d~~~~~~l 634 (693)
...+.+++-.++-+|-|=|+|=.++-+....|..+=+|-+||.-|. .+.|.-+. ++.+..+..+++.|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3478999999999999999999999999999999999999999995 34454333 33445566677766
Q ss_pred HHHHHH
Q psy1604 635 VRILEQ 640 (693)
Q Consensus 635 ~~~l~~ 640 (693)
++-+..
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 655443
No 184
>KOG1132|consensus
Probab=97.91 E-value=5.8e-05 Score=84.49 Aligned_cols=142 Identities=20% Similarity=0.265 Sum_probs=90.5
Q ss_pred CCCHHHHhhhhhhh----cCCCEEEEccCCCChhHHHHH---HHHHHhhcCC--------C-------Cc----------
Q psy1604 220 KPTPIQKYAIPAGL----EGRDLMGCAQTGSGKTAAFLI---PIMHHLLESP--------G-------EL---------- 267 (693)
Q Consensus 220 ~p~~~Q~~ai~~il----~g~~vlv~a~TGsGKTl~~ll---~il~~l~~~~--------~-------~~---------- 267 (693)
+||+.|...+..++ ...+.++..|||+|||++.+- +..+++.... . +.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 68999998877666 457899999999999987543 3334443110 0 00
Q ss_pred ---ccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEE------EEe-----------------------------
Q psy1604 268 ---VTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKIC------LHY----------------------------- 309 (693)
Q Consensus 268 ---~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~------~~~----------------------------- 309 (693)
...+...|++.+-.-|..-..|+.+++++........+. ++.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f~~ 180 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHFYK 180 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccccc
Confidence 000123678899999988899999999987654221110 000
Q ss_pred ----------CCCC-----------------hHHHHHHHhcCCcEEEechhhHHHHHhcCC--cCCCceeEEEEccchhh
Q psy1604 310 ----------GGAS-----------------SMHFNRQLEKGCNILVATMGRLKDILDRGR--ISLASVRFVVLDEADRM 360 (693)
Q Consensus 310 ----------gg~~-----------------~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~--~~l~~~~~lVlDEah~l 360 (693)
++.. .....+.+...+||++|-+.-|++-.-++. +++.+ .+|||||||.|
T Consensus 181 ~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAHNi 259 (945)
T KOG1132|consen 181 IVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAHNI 259 (945)
T ss_pred cccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccccH
Confidence 0000 111223344569999999999988765544 45544 68999999998
Q ss_pred hh
Q psy1604 361 LD 362 (693)
Q Consensus 361 ~~ 362 (693)
.+
T Consensus 260 Ed 261 (945)
T KOG1132|consen 260 ED 261 (945)
T ss_pred HH
Confidence 64
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.91 E-value=0.0002 Score=69.63 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=95.7
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhc---CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCC
Q psy1604 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLE---GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQP 275 (693)
Q Consensus 199 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~---g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~ 275 (693)
+|+....+..++=.+. +---+++.|.+....+.+ ++|.+.+.-+|.|||.+ ++|++..++.++..
T Consensus 4 ~w~p~~~P~wLl~E~e--~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~--------- 71 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE--SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR--------- 71 (229)
T ss_pred CCCchhChHHHHHHHH--cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc---------
Confidence 4555555666665554 233789999999888875 57999999999999998 89999998876543
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcC-CCeeEEEE--eCCCCh--H---HH---HHHHhcCCcEEEechhhHHHHHhc---
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYS-SVLKICLH--YGGASS--M---HF---NRQLEKGCNILVATMGRLKDILDR--- 341 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~-~~l~~~~~--~gg~~~--~---~~---~~~~~~~~~IlV~Tp~~L~~~l~~--- 341 (693)
-+.+++| ++|..|.+..+..-... .+-++..+ .=.... . .. .........|+++||+.++.+.-.
T Consensus 72 LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le 150 (229)
T PF12340_consen 72 LVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLE 150 (229)
T ss_pred EEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHH
Confidence 4677788 58999998888654322 22222221 111111 1 01 111234567999999998764311
Q ss_pred ----CCc-----------CCCceeEEEEccchhhh
Q psy1604 342 ----GRI-----------SLASVRFVVLDEADRML 361 (693)
Q Consensus 342 ----~~~-----------~l~~~~~lVlDEah~l~ 361 (693)
+.. .+.+-..=|+||+|.++
T Consensus 151 ~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L 185 (229)
T PF12340_consen 151 RLQDGKPEEARELLKIQKWLDEHSRDILDESDEIL 185 (229)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhcc
Confidence 111 12234456999999765
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.86 E-value=6e-05 Score=80.30 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=67.9
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHH
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMH 316 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~ 316 (693)
-++|.+..|||||+. ++-++..+... ..+.+++++++...|...+.+.+.+-...
T Consensus 3 v~~I~G~aGTGKTvl-a~~l~~~l~~~--------~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVL-ALNLAKELQNS--------EEGKKVLYLCGNHPLRNKLREQLAKKYNP---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHH-HHHHHHHhhcc--------ccCCceEEEEecchHHHHHHHHHhhhccc----------------
Confidence 478999999999997 45555555111 23446899999999999888777653200
Q ss_pred HHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCC-------chHHHHHHhcc
Q psy1604 317 FNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG-------FLGDIQHVMQH 375 (693)
Q Consensus 317 ~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~-------~~~~i~~i~~~ 375 (693)
......+..+..+.+.+.........+++|||||||++.+.. ....+..++..
T Consensus 58 ------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001122334444443333222356789999999999998732 23556666654
No 187
>KOG1803|consensus
Probab=97.75 E-value=0.00014 Score=78.54 Aligned_cols=64 Identities=28% Similarity=0.434 Sum_probs=51.5
Q ss_pred CCCHHHHhhhhhhhcCC-CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLEGR-DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~-~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
.+.+-|+.|+....+.+ -.++.+|+|+|||.+ +.-+++++...+ .++||.+||.+-+..+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~T-lvEiI~qlvk~~----------k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRT-LVEIISQLVKQK----------KRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceee-HHHHHHHHHHcC----------CeEEEEcCchHHHHHHHHHh
Confidence 67788999999999885 467889999999998 555566665543 37999999999999988854
No 188
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.67 E-value=0.00034 Score=79.92 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=53.9
Q ss_pred CCCCHHHHhhhhhhhcC-CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGLEG-RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g-~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
..+.+.|+.|+..++.. ..+++.+|+|+|||.+ +..++..+... +.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~~----------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVKR----------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHHc----------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999998876 6788999999999986 44455555443 23799999999999999888876
No 189
>PF13245 AAA_19: Part of AAA domain
Probab=97.61 E-value=0.00021 Score=57.36 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=36.9
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
+.-++|.+|.|||||...+ .++..+...... . +.++||++||+..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~-~~i~~l~~~~~~-----~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLA-ARIAELLAARAD-----P-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHHhcC-----C-CCeEEEECCCHHHHHHHHHHH
Confidence 4445669999999997744 444444432110 1 447999999999999988877
No 190
>PRK10536 hypothetical protein; Provisional
Probab=97.60 E-value=0.0011 Score=65.66 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHH
Q psy1604 216 SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRE 285 (693)
Q Consensus 216 ~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 285 (693)
.++...+..|...+..+.++..+++.+++|||||+.+....++.++... ..+++|.-|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~---------~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD---------VDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC---------eeEEEEeCCCCC
Confidence 4666778899999999988888999999999999987776666654422 225677777654
No 191
>KOG0383|consensus
Probab=97.58 E-value=3.7e-06 Score=93.65 Aligned_cols=77 Identities=25% Similarity=0.391 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhc---CCCcEEEEeCcc
Q psy1604 504 QKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKT---KKMKVLVATAVA 578 (693)
Q Consensus 504 ~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~---g~~~ILVaT~v~ 578 (693)
.|+..|...++. ...++++||..-.+..+.+..++...+ ....+.|..+..+|+.++++|+. .+...|.+|...
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 345555555554 567899999999999999999998888 88999999999999999999983 456688888876
Q ss_pred ccc
Q psy1604 579 SRG 581 (693)
Q Consensus 579 ~~G 581 (693)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 544
No 192
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.57 E-value=0.00065 Score=76.56 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=51.9
Q ss_pred HHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 223 PIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 223 ~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
++|+.|+..++.++-+++.++.|+|||.+ +..++..+...... ....++++++||-.-+..+.+.+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~-----~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPK-----QGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccc-----cCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 89999999999999999999999999986 44455544432211 11247999999988888877766553
No 193
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=97.50 E-value=3.8e-05 Score=49.36 Aligned_cols=29 Identities=48% Similarity=1.087 Sum_probs=22.9
Q ss_pred CCCccee-cCCCCCcccCcccccCCCCCCC
Q psy1604 104 KPGDWMC-SCGASNFAKRDACFKCSEPKPE 132 (693)
Q Consensus 104 ~~gdw~~-~c~~~n~~~r~~c~~c~~~~~~ 132 (693)
++|+|.| .|...|++.+..|+.|+.++++
T Consensus 1 k~g~W~C~~C~~~N~~~~~~C~~C~~~rp~ 30 (30)
T PF00641_consen 1 KEGDWKCPSCTFMNPASRSKCVACGAPRPG 30 (30)
T ss_dssp -SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred CCcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence 4689999 5999999999999999999873
No 194
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.50 E-value=0.0008 Score=76.02 Aligned_cols=70 Identities=21% Similarity=0.248 Sum_probs=52.9
Q ss_pred CCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 221 PTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 221 p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
..++|+.|+...+.++-+++.+++|+|||.+ +..++..+.+... ....++++++||..-+..+.+.+...
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLAD------GERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 3589999999999999999999999999986 4445544443211 12347899999998888887776543
No 195
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.26 E-value=0.0024 Score=74.18 Aligned_cols=65 Identities=22% Similarity=0.200 Sum_probs=49.2
Q ss_pred CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHE 292 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~ 292 (693)
..+++-|++|+..+..++-+++.++.|+|||.. +-.++..+.... ....+++++||-.-+..+.+
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~--------~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELG--------GLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcC--------CCceEEEEeCchHHHHHHHH
Confidence 479999999999999889999999999999986 444555443322 11368899999877765443
No 196
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.23 E-value=0.0018 Score=67.79 Aligned_cols=123 Identities=22% Similarity=0.215 Sum_probs=76.2
Q ss_pred CCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcC
Q psy1604 221 PTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYS 300 (693)
Q Consensus 221 p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 300 (693)
+++-|.+++.. ...+++|.|..|||||.+.+.-++..+...+ ....++|++++|+..+..+.+.+......
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-------~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-------VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-------STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-------CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 57889999988 6678999999999999986666665554442 12337999999999999999988876432
Q ss_pred CCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC-cCC-CceeEEEEccch
Q psy1604 301 SVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR-ISL-ASVRFVVLDEAD 358 (693)
Q Consensus 301 ~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~-~~l-~~~~~lVlDEah 358 (693)
.... ................+.|.|...+...+-+.. ... -.-.+-++|+..
T Consensus 72 ~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 72 EQQE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 2100 001112223333456788999988865442211 111 122456677766
No 197
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.18 E-value=0.0037 Score=72.96 Aligned_cols=62 Identities=15% Similarity=0.039 Sum_probs=45.9
Q ss_pred CCCCHHHHhhhhhhhcC-CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGLEG-RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIH 291 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g-~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~ 291 (693)
..+++-|++|+..++.+ +-+++.++.|+|||.. +-.+...+... +.++++++||-.-+..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~~----------g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEAA----------GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHhC----------CCeEEEEeCcHHHHHHHH
Confidence 36899999999998874 6678999999999985 34444444322 347999999976665543
No 198
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.16 E-value=0.0027 Score=57.75 Aligned_cols=75 Identities=24% Similarity=0.270 Sum_probs=53.8
Q ss_pred cCCCCHHHHHHHHHHHhcCC-CcEEEEeCcccccCCCCC--CCEEEEcCCCCC---------------------------
Q psy1604 549 HGSRLQSQREQAIHDFKTKK-MKVLVATAVASRGLDIKG--IRHVINYDLPQE--------------------------- 598 (693)
Q Consensus 549 hg~~~~~~R~~~~~~F~~g~-~~ILVaT~v~~~GiDip~--v~~VI~~d~p~s--------------------------- 598 (693)
.-+.+..+...+++.|+... ..||++|.-+++|||+|+ ++.||...+|..
T Consensus 28 ~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~ 107 (141)
T smart00492 28 VQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVS 107 (141)
T ss_pred EeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHH
Confidence 33344556788999998754 379999988999999987 567888887731
Q ss_pred ----hhhhhhhhcccccCCCcceEEEEeC
Q psy1604 599 ----IDEYVHRIGRTGRVGNKGRATSFYD 623 (693)
Q Consensus 599 ----~~~y~Qr~GRagR~G~~G~~~~~~~ 623 (693)
...+.|.+||+-|..++--++++++
T Consensus 108 ~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 108 LPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1223488899999866555556655
No 199
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.14 E-value=0.0022 Score=58.39 Aligned_cols=69 Identities=25% Similarity=0.334 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCC---cEEEEeCc--ccccCCCCC--CCEEEEcCCCCC-----------------------------
Q psy1604 555 SQREQAIHDFKTKKM---KVLVATAV--ASRGLDIKG--IRHVINYDLPQE----------------------------- 598 (693)
Q Consensus 555 ~~R~~~~~~F~~g~~---~ILVaT~v--~~~GiDip~--v~~VI~~d~p~s----------------------------- 598 (693)
.+..++++.|++... .||+++.- +++|||+++ ++.||...+|..
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 355788889987544 69999877 999999987 678998887731
Q ss_pred --hhhhhhhhcccccCCCcceEEEEeC
Q psy1604 599 --IDEYVHRIGRTGRVGNKGRATSFYD 623 (693)
Q Consensus 599 --~~~y~Qr~GRagR~G~~G~~~~~~~ 623 (693)
.....|.+||+-|..++--++++++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEe
Confidence 1123488999999876655666665
No 200
>KOG4198|consensus
Probab=97.11 E-value=0.00036 Score=69.15 Aligned_cols=32 Identities=41% Similarity=1.084 Sum_probs=29.6
Q ss_pred CCCCcceec-CCCCCcccCcccccCCCCCCCCC
Q psy1604 103 SKPGDWMCS-CGASNFAKRDACFKCSEPKPEGA 134 (693)
Q Consensus 103 ~~~gdw~~~-c~~~n~~~r~~c~~c~~~~~~~~ 134 (693)
.++|||.|+ |+.+||+++..|++|+++++.++
T Consensus 136 ~~~GDW~Cp~C~fhNfarn~~C~rC~~~r~~~a 168 (280)
T KOG4198|consen 136 WRSGDWECPGCNFHNFARNSECFRCGAKRPLAA 168 (280)
T ss_pred ccccCcccCCCCceeccccchhhhcCCcCcccc
Confidence 478999996 99999999999999999999865
No 201
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.00 E-value=0.0037 Score=74.01 Aligned_cols=60 Identities=22% Similarity=0.034 Sum_probs=44.9
Q ss_pred CCCHHHHhhhhhhhcCC-CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLEGR-DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQI 290 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~-~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 290 (693)
.+++-|++++..++.++ -+++.+..|+|||.. +-.+...+.. .+.+++.++||-.-+..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----------cCCeEEEecCcHHHHHHH
Confidence 69999999999999865 478999999999986 4444443322 234799999997666544
No 202
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=96.99 E-value=0.00037 Score=43.10 Aligned_cols=24 Identities=54% Similarity=1.347 Sum_probs=22.4
Q ss_pred Ccceec-CCCCCcccCcccccCCCC
Q psy1604 106 GDWMCS-CGASNFAKRDACFKCSEP 129 (693)
Q Consensus 106 gdw~~~-c~~~n~~~r~~c~~c~~~ 129 (693)
|+|.|+ |...|++.+..|+.|+.|
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~p 25 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGAP 25 (26)
T ss_pred CcccCCCCCCcChhhhccccccCCc
Confidence 699994 999999999999999986
No 203
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.85 E-value=0.011 Score=60.73 Aligned_cols=67 Identities=19% Similarity=0.167 Sum_probs=52.0
Q ss_pred hCCCCCCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHH
Q psy1604 215 KSNYTKPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQ 289 (693)
Q Consensus 215 ~~g~~~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q 289 (693)
-+|+....-.|.-|+..++.. .=+.+.++-|||||+-++.+.+.+.+..+ ...++||.=|+..+-+.
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--------~y~KiiVtRp~vpvG~d 291 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--------RYRKIIVTRPTVPVGED 291 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--------hhceEEEecCCcCcccc
Confidence 358888888999999999865 34667899999999998888888877663 34478888888666543
No 204
>KOG1805|consensus
Probab=96.84 E-value=0.0061 Score=69.52 Aligned_cols=135 Identities=19% Similarity=0.157 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCC-EEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcC
Q psy1604 204 GLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRD-LMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAP 282 (693)
Q Consensus 204 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~-vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~P 282 (693)
.+.|.+.+. -+..+..-|++|+..++..+| .+|.+=+|+|||.. +..++..|... +.+||+.+-
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~~----------gkkVLLtsy 721 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVAL----------GKKVLLTSY 721 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHHc----------CCeEEEEeh
Confidence 445555543 345788999999999987765 56778899999976 33344444332 347999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCeeEEEEeCCC-C-----------------hHHHHHHHhcCCcEEEechhhHHHHHhcCCc
Q psy1604 283 TRELVMQIHEVACKYAYSSVLKICLHYGGA-S-----------------SMHFNRQLEKGCNILVATMGRLKDILDRGRI 344 (693)
Q Consensus 283 tr~La~Q~~~~~~~~~~~~~l~~~~~~gg~-~-----------------~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~ 344 (693)
|..-+..+.-.++.+.. ...- .|.. . .....+..-+.+.|+.+|---+.+.+-
T Consensus 722 ThsAVDNILiKL~~~~i----~~lR-LG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf---- 792 (1100)
T KOG1805|consen 722 THSAVDNILIKLKGFGI----YILR-LGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF---- 792 (1100)
T ss_pred hhHHHHHHHHHHhccCc----ceee-cCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----
Confidence 98888887776666531 1111 1111 1 111112233457787777654443332
Q ss_pred CCCceeEEEEccchhhhh
Q psy1604 345 SLASVRFVVLDEADRMLD 362 (693)
Q Consensus 345 ~l~~~~~lVlDEah~l~~ 362 (693)
....|++.|||||-.++.
T Consensus 793 ~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 793 VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred hccccCEEEEcccccccc
Confidence 345699999999998754
No 205
>KOG1995|consensus
Probab=96.80 E-value=0.0018 Score=65.64 Aligned_cols=30 Identities=57% Similarity=1.277 Sum_probs=27.2
Q ss_pred CCCccee--cCCCCCcccCcccccCCCCCCCC
Q psy1604 104 KPGDWMC--SCGASNFAKRDACFKCSEPKPEG 133 (693)
Q Consensus 104 ~~gdw~~--~c~~~n~~~r~~c~~c~~~~~~~ 133 (693)
+++||.| +|.|.||++|..|++|..+++..
T Consensus 215 ~d~Dw~c~~~c~N~nfa~r~~cnrck~~Kp~~ 246 (351)
T KOG1995|consen 215 EDGDWDCPPSCGNRNFAWREECNRCKAPKPER 246 (351)
T ss_pred ccccccccccccccccccccccccccCCCccc
Confidence 5589999 49999999999999999999865
No 206
>PRK08181 transposase; Validated
Probab=96.72 E-value=0.01 Score=60.14 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=66.0
Q ss_pred CCHHHHhhhh----hhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 221 PTPIQKYAIP----AGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 221 p~~~Q~~ai~----~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
+.+.|..++. .+..++++++.+|+|+|||.. +..+.+.+...+ .+++++ +..+|..++......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHL-a~Aia~~a~~~g----------~~v~f~-~~~~L~~~l~~a~~~ 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHL-AAAIGLALIENG----------WRVLFT-RTTDLVQKLQVARRE 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHH-HHHHHHHHHHcC----------Cceeee-eHHHHHHHHHHHHhC
Confidence 3455555553 344678999999999999975 334444444432 245554 445566554321100
Q ss_pred HhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCc-hHHHHHHhcc
Q psy1604 297 YAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGF-LGDIQHVMQH 375 (693)
Q Consensus 297 ~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~-~~~i~~i~~~ 375 (693)
.+...++. .+.++++|||||.+....... ...+..++..
T Consensus 156 ---------------------------------~~~~~~l~-------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~ 195 (269)
T PRK08181 156 ---------------------------------LQLESAIA-------KLDKFDLLILDDLAYVTKDQAETSVLFELISA 195 (269)
T ss_pred ---------------------------------CcHHHHHH-------HHhcCCEEEEeccccccCCHHHHHHHHHHHHH
Confidence 01112222 234678999999997643222 2334445543
Q ss_pred CCCCCCCCcceEEeeccCchhHHh
Q psy1604 376 STMPDVANRQTLMFSATFPETIQK 399 (693)
Q Consensus 376 ~~~~~~~~~q~lllSAT~~~~~~~ 399 (693)
.. ....+++.|...+.+...
T Consensus 196 R~----~~~s~IiTSN~~~~~w~~ 215 (269)
T PRK08181 196 RY----ERRSILITANQPFGEWNR 215 (269)
T ss_pred HH----hCCCEEEEcCCCHHHHHH
Confidence 21 123566666666555443
No 207
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.71 E-value=0.0056 Score=65.47 Aligned_cols=60 Identities=25% Similarity=0.308 Sum_probs=44.0
Q ss_pred CCCHHHHhhhhhh------hcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHH
Q psy1604 220 KPTPIQKYAIPAG------LEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQI 290 (693)
Q Consensus 220 ~p~~~Q~~ai~~i------l~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 290 (693)
+|++-|++++..+ ..+.++++.++-|+|||+. +-.+...+.. .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~---------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS---------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc---------ccceEEEecchHHHHHhc
Confidence 3678899998888 5778999999999999995 3333333332 234699999997666654
No 208
>KOG1131|consensus
Probab=96.66 E-value=0.023 Score=60.50 Aligned_cols=80 Identities=23% Similarity=0.278 Sum_probs=50.7
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCCC-------ceEEecCCCCHHHHHHHHHHHh----cCCCcEE--EEeCcccccCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETEI-------ATTSIHGSRLQSQREQAIHDFK----TKKMKVL--VATAVASRGLD 583 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~~-------~v~~lhg~~~~~~R~~~~~~F~----~g~~~IL--VaT~v~~~GiD 583 (693)
.++.+++|+.+.--.+.++......|+ +...+ +.-+..+-.-.+...+ .|+-.|| ||-.-.++|||
T Consensus 529 vpdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fI-etpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgid 607 (755)
T KOG1131|consen 529 VPDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFI-ETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGID 607 (755)
T ss_pred CCCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEE-eCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcc
Confidence 356689999998877777766555442 22222 3323333344444443 4665666 45567789999
Q ss_pred CCCCC--EEEEcCCCC
Q psy1604 584 IKGIR--HVINYDLPQ 597 (693)
Q Consensus 584 ip~v~--~VI~~d~p~ 597 (693)
+.+-- .||.++.|.
T Consensus 608 F~hhyGR~ViM~gIP~ 623 (755)
T KOG1131|consen 608 FDHHYGREVIMEGIPY 623 (755)
T ss_pred cccccCceEEEEeccc
Confidence 97754 899999995
No 209
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.63 E-value=0.0043 Score=61.62 Aligned_cols=86 Identities=21% Similarity=0.292 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCC-CChHHHHHHHhc-CCcEEEechhhHHHHHhcCCcCCCce
Q psy1604 272 CAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGG-ASSMHFNRQLEK-GCNILVATMGRLKDILDRGRISLASV 349 (693)
Q Consensus 272 ~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg-~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~ 349 (693)
...|.+|||+.+-.=|..+.+.++.|... ...+.-++.- ....++...+.. ..+|.|+||+|+..+++.+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 45678999999877788888888877411 1223333333 255666666664 68999999999999999999999999
Q ss_pred eEEEEccch
Q psy1604 350 RFVVLDEAD 358 (693)
Q Consensus 350 ~~lVlDEah 358 (693)
.+||||--|
T Consensus 203 ~~ivlD~s~ 211 (252)
T PF14617_consen 203 KRIVLDWSY 211 (252)
T ss_pred eEEEEcCCc
Confidence 999999876
No 210
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.62 E-value=0.0064 Score=61.22 Aligned_cols=80 Identities=23% Similarity=0.347 Sum_probs=60.1
Q ss_pred HHHHHHhcCCCcEEEEeCcccccCCCCC--------CCEEEEcCCCCChhhhhhhhcccccCCCc-ceEEEEeCCCC--c
Q psy1604 559 QAIHDFKTKKMKVLVATAVASRGLDIKG--------IRHVINYDLPQEIDEYVHRIGRTGRVGNK-GRATSFYDPDQ--D 627 (693)
Q Consensus 559 ~~~~~F~~g~~~ILVaT~v~~~GiDip~--------v~~VI~~d~p~s~~~y~Qr~GRagR~G~~-G~~~~~~~~~~--d 627 (693)
...+.|.+|+.+|+|.|+.++.||.+.. -.+-|.+.+|||.+..+|..||+.|.||. .-.|.++..+- +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 3467899999999999999999999853 23567789999999999999999999984 44455555332 3
Q ss_pred hHHHHHHHHHH
Q psy1604 628 GAIAKDLVRIL 638 (693)
Q Consensus 628 ~~~~~~l~~~l 638 (693)
..++..+.+.|
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 211
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.61 E-value=0.022 Score=68.13 Aligned_cols=75 Identities=19% Similarity=0.105 Sum_probs=50.7
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhhhhhhhc-CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCC
Q psy1604 205 LREILVKNLKKSNYTKPTPIQKYAIPAGLE-GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPT 283 (693)
Q Consensus 205 l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~-g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Pt 283 (693)
+++..+......+ ..+++-|++++..+.. ++-+++.++.|+|||.+ +-++...+.. .+.+++.++||
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~----------~G~~V~g~ApT 434 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA----------AGYRVVGGALA 434 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH----------cCCeEEEEcCc
Confidence 3344444333322 4799999999998764 56688999999999986 4445444432 23478999999
Q ss_pred HHHHHHHH
Q psy1604 284 RELVMQIH 291 (693)
Q Consensus 284 r~La~Q~~ 291 (693)
-.-+..+.
T Consensus 435 gkAA~~L~ 442 (1102)
T PRK13826 435 GKAAEGLE 442 (1102)
T ss_pred HHHHHHHH
Confidence 76665543
No 212
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.53 E-value=0.0046 Score=55.40 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=12.6
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ 252 (693)
+++.+++.+++|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3567899999999999863
No 213
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.0041 Score=67.18 Aligned_cols=141 Identities=19% Similarity=0.205 Sum_probs=70.8
Q ss_pred EEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH-----HHHhcCCCeeEEEEeCCCCh
Q psy1604 240 GCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA-----CKYAYSSVLKICLHYGGASS 314 (693)
Q Consensus 240 v~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~-----~~~~~~~~l~~~~~~gg~~~ 314 (693)
..+.||||||++.+-.||+...+. ....|+.|..-........-+ .+|.... ...+++...
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg----------yr~flffvnq~nilekt~~nftd~~s~kylf~e----~i~~~d~~i 67 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG----------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSE----NININDENI 67 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc----------hhhEEEEecchhHHHHHHhhcccchhhhHhhhh----hhhcCCcee
Confidence 457899999998666666554332 124566666544443332221 1111111 111111111
Q ss_pred HH----HHHHHhcCCcEEEechhhHHHHHhcCC---cC---CCceeEE-EEccchhhhhCC---------chHHHHHHhc
Q psy1604 315 MH----FNRQLEKGCNILVATMGRLKDILDRGR---IS---LASVRFV-VLDEADRMLDMG---------FLGDIQHVMQ 374 (693)
Q Consensus 315 ~~----~~~~~~~~~~IlV~Tp~~L~~~l~~~~---~~---l~~~~~l-VlDEah~l~~~~---------~~~~i~~i~~ 374 (693)
.. .-....+...|.++|.+.|...+.+.+ +. +.+..+| +-||||++-... -...++..+.
T Consensus 68 ~ikkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~ 147 (812)
T COG3421 68 EIKKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVK 147 (812)
T ss_pred eeeeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHH
Confidence 00 001123456899999999988775432 33 4445555 449999986421 0111111111
Q ss_pred cCCCCCCCCcceEEeeccCch
Q psy1604 375 HSTMPDVANRQTLMFSATFPE 395 (693)
Q Consensus 375 ~~~~~~~~~~q~lllSAT~~~ 395 (693)
. .+...++.-++.+|||.|.
T Consensus 148 l-a~~~nkd~~~lef~at~~k 167 (812)
T COG3421 148 L-ALEQNKDNLLLEFSATIPK 167 (812)
T ss_pred H-HHhcCCCceeehhhhcCCc
Confidence 1 1222345667889999884
No 214
>KOG0298|consensus
Probab=96.49 E-value=0.0081 Score=70.34 Aligned_cols=156 Identities=18% Similarity=0.142 Sum_probs=93.1
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCC-------cccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEE
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGE-------LVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICL 307 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~-------~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~ 307 (693)
|++++++...|.|||..-+...+..+-..... .........-.|||+|. ++..||++++.+-.... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 56789999999999998665554442211000 00011223457999996 77899999999876544 67777
Q ss_pred EeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC--------------CcCCC------ceeEEEEccchhhhhCCchH
Q psy1604 308 HYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG--------------RISLA------SVRFVVLDEADRMLDMGFLG 367 (693)
Q Consensus 308 ~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~--------------~~~l~------~~~~lVlDEah~l~~~~~~~ 367 (693)
+.|-.........--..+||+++|+..|..-+... ..... .+=-|++|||+.+-. ...
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 76643322222222346899999999997655322 11111 112389999997743 333
Q ss_pred HHHHHhccCCCCCCCCcceEEeeccCchhHHh
Q psy1604 368 DIQHVMQHSTMPDVANRQTLMFSATFPETIQK 399 (693)
Q Consensus 368 ~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~ 399 (693)
.....+..+. ..+.=+.|+|+=..+..
T Consensus 530 ~~a~M~~rL~-----~in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 530 AAAEMVRRLH-----AINRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHhh-----hhceeeecCCchhhhhh
Confidence 4444443322 45677889996333333
No 215
>PRK04296 thymidine kinase; Provisional
Probab=96.35 E-value=0.0076 Score=58.09 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=24.0
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcC
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAP 282 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~P 282 (693)
.-.++.+++|+|||..+ +-++.++... +.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~-l~~~~~~~~~----------g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTEL-LQRAYNYEER----------GMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHH-HHHHHHHHHc----------CCeEEEEec
Confidence 34688999999999874 4444444332 236788766
No 216
>KOG0701|consensus
Probab=96.31 E-value=0.0053 Score=74.71 Aligned_cols=94 Identities=22% Similarity=0.345 Sum_probs=77.1
Q ss_pred cEEEEecChHhHHHHHHHHhhCC-CceEEecCCCC-----------HHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCC
Q psy1604 520 GVIVFVSTIRNADFIACYLCETE-IATTSIHGSRL-----------QSQREQAIHDFKTKKMKVLVATAVASRGLDIKGI 587 (693)
Q Consensus 520 kvLVF~~s~~~a~~l~~~L~~~~-~~v~~lhg~~~-----------~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v 587 (693)
..++|++....+..+.+.+++.. +.+..+.|.+. ...+.+++..|+...+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 35899999999988888886642 23333444332 3346789999999999999999999999999999
Q ss_pred CEEEEcCCCCChhhhhhhhcccccCC
Q psy1604 588 RHVINYDLPQEIDEYVHRIGRTGRVG 613 (693)
Q Consensus 588 ~~VI~~d~p~s~~~y~Qr~GRagR~G 613 (693)
+.|+.++.|.....|+|++||+-+..
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997753
No 217
>PRK06526 transposase; Provisional
Probab=96.30 E-value=0.012 Score=59.24 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=23.1
Q ss_pred hhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 229 IPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 229 i~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
...+..++++++.+|+|+|||..+ ..+...+..
T Consensus 92 ~~fi~~~~nlll~Gp~GtGKThLa-~al~~~a~~ 124 (254)
T PRK06526 92 LDFVTGKENVVFLGPPGTGKTHLA-IGLGIRACQ 124 (254)
T ss_pred CchhhcCceEEEEeCCCCchHHHH-HHHHHHHHH
Confidence 344556789999999999999763 334444443
No 218
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.30 E-value=0.043 Score=49.57 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=18.8
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
++.+++.+++|+|||.. +..+...+
T Consensus 19 ~~~v~i~G~~G~GKT~l-~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL-ARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 57899999999999974 44444444
No 219
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.17 E-value=0.029 Score=56.00 Aligned_cols=110 Identities=18% Similarity=0.275 Sum_probs=58.7
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSM 315 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 315 (693)
..+++.+++|+|||.. +..+...+...+ ..++++ +..+|...+...+.. . +
T Consensus 100 ~~~~l~G~~GtGKThL-a~aia~~l~~~g----------~~v~~i-t~~~l~~~l~~~~~~----~---------~---- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHL-AAAICNELLLRG----------KSVLII-TVADIMSAMKDTFSN----S---------E---- 150 (244)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHhcC----------CeEEEE-EHHHHHHHHHHHHhh----c---------c----
Confidence 4789999999999986 445555565432 245555 333444333222100 0 0
Q ss_pred HHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchH-HHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 316 HFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLG-DIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 316 ~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~-~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
.+...+++. +.++++|||||++......+.. .+..|+... ......+++.|---+
T Consensus 151 --------------~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~R---y~~~~~tiitSNl~~ 206 (244)
T PRK07952 151 --------------TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRR---SSSKRPTGMLTNSNM 206 (244)
T ss_pred --------------ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHH---HhCCCCEEEeCCCCH
Confidence 122233322 4578899999999775443333 233344331 112456777776655
Q ss_pred hhHH
Q psy1604 395 ETIQ 398 (693)
Q Consensus 395 ~~~~ 398 (693)
.++.
T Consensus 207 ~~l~ 210 (244)
T PRK07952 207 EEMT 210 (244)
T ss_pred HHHH
Confidence 5444
No 220
>PRK06921 hypothetical protein; Provisional
Probab=96.17 E-value=0.024 Score=57.64 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=21.2
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
.+.++++.+++|+|||.. +..+...+..
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhh
Confidence 357899999999999975 4555666654
No 221
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.064 Score=57.32 Aligned_cols=122 Identities=15% Similarity=0.111 Sum_probs=61.6
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCC-HHHHHHHHHHHHHHhcCCCeeEEEEeCCCCh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPT-RELVMQIHEVACKYAYSSVLKICLHYGGASS 314 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Pt-r~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~ 314 (693)
+.+++.+|||+|||.+..- +..++...... ....-.|+-+.+ |.-+..+ ++.|+...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aK-LA~~~~~~~~~-----~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAK-LAAIYGINSDD-----KSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHHhhhcc-----CCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe-------
Confidence 5688999999999987433 33333221100 011123344444 3333322 44444433333221
Q ss_pred HHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCC-chHHHHHHhccCCCCCCCCcceEEeeccC
Q psy1604 315 MHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG-FLGDIQHVMQHSTMPDVANRQTLMFSATF 393 (693)
Q Consensus 315 ~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~-~~~~i~~i~~~~~~~~~~~~q~lllSAT~ 393 (693)
+-++..+...+.. +.++++|+||++.++.... ....+..++.... .+...++.+|||.
T Consensus 239 --------------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~---~~~e~~LVlsat~ 297 (388)
T PRK12723 239 --------------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACG---RDAEFHLAVSSTT 297 (388)
T ss_pred --------------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC---CCCeEEEEEcCCC
Confidence 1134445444442 3578999999999875221 1223334443322 1224568889996
Q ss_pred c
Q psy1604 394 P 394 (693)
Q Consensus 394 ~ 394 (693)
.
T Consensus 298 ~ 298 (388)
T PRK12723 298 K 298 (388)
T ss_pred C
Confidence 4
No 222
>PRK08116 hypothetical protein; Validated
Probab=95.90 E-value=0.052 Score=55.28 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=20.8
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcC
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLES 263 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~ 263 (693)
..+++.+++|+|||.. +.++.+.+...
T Consensus 115 ~gl~l~G~~GtGKThL-a~aia~~l~~~ 141 (268)
T PRK08116 115 VGLLLWGSVGTGKTYL-AACIANELIEK 141 (268)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHHc
Confidence 3599999999999986 44567777654
No 223
>PRK12377 putative replication protein; Provisional
Probab=95.87 E-value=0.049 Score=54.59 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=29.6
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHE 292 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~ 292 (693)
..++++.+++|+|||.. +.++.+.+...+ ..+++ .+..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~~g----------~~v~~-i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLAKG----------RSVIV-VTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHcC----------CCeEE-EEHHHHHHHHHH
Confidence 36799999999999985 455666665432 23444 354566665543
No 224
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.80 E-value=0.016 Score=58.47 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=35.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
++.++++.+++|+|||.. +.++.+.+...+ .+ ++.+++.+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThL-a~Ai~~~l~~~g----------~s-v~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHL-AIAIGNELLKAG----------IS-VLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHHcC----------Ce-EEEEEHHHHHHHHHHHH
Confidence 677999999999999986 455666665432 23 45557778888876654
No 225
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.76 E-value=0.031 Score=65.58 Aligned_cols=109 Identities=21% Similarity=0.241 Sum_probs=72.0
Q ss_pred CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 219 TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
..|++-|++++... ...++|.|..|||||.+...-+ .+|+.... ....++|+|+.|+..|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ri-a~Li~~~~------v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRI-AWLLSVEN------ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHH-HHHHHcCC------CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 46899999998653 4689999999999999844444 44443321 122379999999999999999988864
Q ss_pred cCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHH-HHhcCC--cCCCceeEEEEccchh
Q psy1604 299 YSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKD-ILDRGR--ISLASVRFVVLDEADR 359 (693)
Q Consensus 299 ~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~-~l~~~~--~~l~~~~~lVlDEah~ 359 (693)
... ...+.|+|...+.. +|+... ..+. -.+-|+|+.+.
T Consensus 74 ~~~----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 74 GTS----------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred ccc----------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 210 12567888888754 343321 1111 13457787764
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.73 E-value=0.066 Score=56.07 Aligned_cols=46 Identities=28% Similarity=0.331 Sum_probs=30.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIH 291 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~ 291 (693)
.+.++++.++||+|||.. +..+.+.++..+ ..|+++ +...|..++.
T Consensus 182 ~~~~Lll~G~~GtGKThL-a~aIa~~l~~~g----------~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL-SNCIAKELLDRG----------KSVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHHCC----------CeEEEE-EHHHHHHHHH
Confidence 357899999999999985 445666665432 245554 4455655543
No 227
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.67 E-value=0.015 Score=52.26 Aligned_cols=41 Identities=24% Similarity=0.213 Sum_probs=25.8
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTREL 286 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 286 (693)
++.+++.+|+|+|||.. +..++..+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl-~~~l~~~~~~~~----------~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTL-ARALARELGPPG----------GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHH-HHHHHhccCCCC----------CCEEEECCEEcc
Confidence 46789999999999996 333333332211 246777776544
No 228
>PRK08727 hypothetical protein; Validated
Probab=95.65 E-value=0.04 Score=54.95 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=18.0
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
..+++.+++|+|||.. +..+.+.+..
T Consensus 42 ~~l~l~G~~G~GKThL-~~a~~~~~~~ 67 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL-ALALCAAAEQ 67 (233)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 3489999999999974 3344444443
No 229
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.61 E-value=0.14 Score=54.50 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=33.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.|.-+++.+++|+|||...+. +...+... +.+++++.-. +-..|+...+.++.
T Consensus 81 ~GslvLI~G~pG~GKStLllq-~a~~~a~~----------g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQ-VAARLAKR----------GGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHH-HHHHHHhc----------CCeEEEEECC-cCHHHHHHHHHHcC
Confidence 467789999999999986433 33333322 2367887654 44567666666553
No 230
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.59 E-value=0.055 Score=59.43 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=62.8
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSM 315 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 315 (693)
..+++.+++|+|||.. +..+.+.+.... .+.+++++.+ .++..++...+..-.
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~--------~~~~v~yv~~-~~f~~~~~~~l~~~~----------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNF--------SDLKVSYMSG-DEFARKAVDILQKTH----------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhC--------CCCeEEEEEH-HHHHHHHHHHHHHhh-----------------
Confidence 4689999999999964 345555554422 2235676655 556655544432200
Q ss_pred HHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhC-CchHHHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 316 HFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDM-GFLGDIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 316 ~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~-~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
+.+..+.. .+.+.++|||||+|.+... .....+..++..... ...|+++.|-..|
T Consensus 195 -----------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~---~~k~iIltsd~~P 250 (450)
T PRK14087 195 -----------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIE---NDKQLFFSSDKSP 250 (450)
T ss_pred -----------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHH---cCCcEEEECCCCH
Confidence 11111111 2346789999999987532 223444555544321 2447777766666
Q ss_pred hhHHh
Q psy1604 395 ETIQK 399 (693)
Q Consensus 395 ~~~~~ 399 (693)
..+..
T Consensus 251 ~~l~~ 255 (450)
T PRK14087 251 ELLNG 255 (450)
T ss_pred HHHhh
Confidence 65543
No 231
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.58 E-value=0.04 Score=61.30 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=82.8
Q ss_pred HHHHhhhhhhh-----cC----CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 223 PIQKYAIPAGL-----EG----RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 223 ~~Q~~ai~~il-----~g----~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
|+|+-.+-.++ .+ +.+++.-+=+-|||......++..++-.+ ..+..++++++++.-|..+++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-------~~~~~i~~~A~~~~QA~~~f~~ 73 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG-------EPGAEIYCAANTRDQAKIVFDE 73 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC-------ccCceEEEEeCCHHHHHHHHHH
Confidence 67777766665 12 46888889999999765554455554433 2346799999999999999999
Q ss_pred HHHHhcCCCeeEEEEeCCCChHHHHHHHh-cCCcEEEechhhHHHHHhcC--CcCCCceeEEEEccchhhhhCCchHHHH
Q psy1604 294 ACKYAYSSVLKICLHYGGASSMHFNRQLE-KGCNILVATMGRLKDILDRG--RISLASVRFVVLDEADRMLDMGFLGDIQ 370 (693)
Q Consensus 294 ~~~~~~~~~l~~~~~~gg~~~~~~~~~~~-~~~~IlV~Tp~~L~~~l~~~--~~~l~~~~~lVlDEah~l~~~~~~~~i~ 370 (693)
+.++........... ..+... ....|..-..+.+...+... ...=.+.+++|+||+|.+.+......+.
T Consensus 74 ~~~~i~~~~~l~~~~--------~~~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~ 145 (477)
T PF03354_consen 74 AKKMIEASPELRKRK--------KPKIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALE 145 (477)
T ss_pred HHHHHHhChhhccch--------hhhhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHH
Confidence 988764421110000 000000 11233332223333222221 1222357899999999886544333333
Q ss_pred HHhccCCCCCCCCcceEEee
Q psy1604 371 HVMQHSTMPDVANRQTLMFS 390 (693)
Q Consensus 371 ~i~~~~~~~~~~~~q~lllS 390 (693)
.-+.. .++.+++..|
T Consensus 146 ~g~~~-----r~~pl~~~IS 160 (477)
T PF03354_consen 146 SGMGA-----RPNPLIIIIS 160 (477)
T ss_pred hhhcc-----CCCceEEEEe
Confidence 33322 2356665554
No 232
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.51 E-value=0.026 Score=55.64 Aligned_cols=110 Identities=16% Similarity=0.266 Sum_probs=62.8
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHH
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMH 316 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~ 316 (693)
.+++.+++|+|||-- +.++.+.+.+.. .+.+++++.. .+........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~--------~~~~v~y~~~-~~f~~~~~~~~~~-------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH--------PGKRVVYLSA-EEFIREFADALRD-------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC--------TTS-EEEEEH-HHHHHHHHHHHHT--------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc--------ccccceeecH-HHHHHHHHHHHHc--------------------
Confidence 489999999999984 555666555432 2336777644 3444443333222
Q ss_pred HHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCC-chHHHHHHhccCCCCCCCCcceEEeeccCch
Q psy1604 317 FNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG-FLGDIQHVMQHSTMPDVANRQTLMFSATFPE 395 (693)
Q Consensus 317 ~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~-~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~ 395 (693)
.....+.+ .+.+.++|+||.+|.+.... ....+..++..... .+.++++.|...|.
T Consensus 86 -------------~~~~~~~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~---~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 -------------GEIEEFKD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIE---SGKQLILTSDRPPS 142 (219)
T ss_dssp -------------TSHHHHHH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHH---TTSEEEEEESS-TT
T ss_pred -------------ccchhhhh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHh---hCCeEEEEeCCCCc
Confidence 01122222 24578899999999986532 34444455544321 25678888878877
Q ss_pred hHHh
Q psy1604 396 TIQK 399 (693)
Q Consensus 396 ~~~~ 399 (693)
.+..
T Consensus 143 ~l~~ 146 (219)
T PF00308_consen 143 ELSG 146 (219)
T ss_dssp TTTT
T ss_pred cccc
Confidence 6543
No 233
>PHA02533 17 large terminase protein; Provisional
Probab=95.47 E-value=0.076 Score=59.39 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=53.5
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.|.|+|+..+..+..++-.++..+=..|||......++..++..+ +..+++++|++.-+..+++.++...
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~---------~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK---------DKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC---------CCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 588999999988766666678888899999876655554444332 2379999999999999888887654
No 234
>PRK14974 cell division protein FtsY; Provisional
Probab=95.43 E-value=0.068 Score=55.99 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=31.7
Q ss_pred CceeEEEEccchhhh-hCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhh
Q psy1604 347 ASVRFVVLDEADRML-DMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKG 401 (693)
Q Consensus 347 ~~~~~lVlDEah~l~-~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~ 401 (693)
.+.++|++|.+.++. +......+..+..... ++..++.++||..++....+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~----pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTK----PDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhC----CceEEEeeccccchhHHHHH
Confidence 356799999999885 2344555555554321 35567888998655444333
No 235
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.42 E-value=0.063 Score=61.96 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=54.5
Q ss_pred HhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 214 KKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 214 ~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
....-..+++-|++++..- ..+++|.|..|||||.+.+. -+..|+.... ....++|+++.|+..|..+.+.
T Consensus 190 ~~~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~-r~ayLl~~~~------~~~~~IL~ltft~~AA~em~eR 260 (684)
T PRK11054 190 SQVESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVA-RAGWLLARGQ------AQPEQILLLAFGRQAAEEMDER 260 (684)
T ss_pred HhccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHH-HHHHHHHhCC------CCHHHeEEEeccHHHHHHHHHH
Confidence 3334457999999998643 35689999999999998444 3444443321 1234799999999999999988
Q ss_pred HHHHh
Q psy1604 294 ACKYA 298 (693)
Q Consensus 294 ~~~~~ 298 (693)
+....
T Consensus 261 L~~~l 265 (684)
T PRK11054 261 IRERL 265 (684)
T ss_pred HHHhc
Confidence 87654
No 236
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.39 E-value=0.062 Score=66.64 Aligned_cols=124 Identities=21% Similarity=0.228 Sum_probs=80.9
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
++|+-|.++|.. .+++++|.|.-|||||.+..--++..+... . .-.++|+|+=|+..+..+.+.+.+...
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~-------~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG-V-------DIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-C-------CHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 368999999973 688999999999999998666666655433 1 113699999999999988887766432
Q ss_pred CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCC--ceeEEEEccchh
Q psy1604 300 SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLA--SVRFVVLDEADR 359 (693)
Q Consensus 300 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~--~~~~lVlDEah~ 359 (693)
... . .........+++..-...-|+|...+...+-+.....- +-.+=|.||...
T Consensus 71 ~~~-~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 71 KAL-Q-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHH-h-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 110 0 01122334455555567789999998765543322111 123456888875
No 237
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.38 E-value=0.073 Score=58.78 Aligned_cols=111 Identities=19% Similarity=0.238 Sum_probs=59.2
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSM 315 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 315 (693)
..+++.+++|+|||.. +..+.+.+.... .+.+++++ +...+..++...+..-
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~~--------~~~~v~yi-~~~~~~~~~~~~~~~~------------------ 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEKN--------PNAKVVYV-TSEKFTNDFVNALRNN------------------ 200 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHhC--------CCCeEEEE-EHHHHHHHHHHHHHcC------------------
Confidence 4689999999999985 445555555432 12356666 4445554443332110
Q ss_pred HHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCC-chHHHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 316 HFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG-FLGDIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 316 ~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~-~~~~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
+...+.+. +.++++|||||+|.+.... ....+..++..... ...++++.|...|
T Consensus 201 ---------------~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~---~~~~iiits~~~p 255 (450)
T PRK00149 201 ---------------TMEEFKEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHE---AGKQIVLTSDRPP 255 (450)
T ss_pred ---------------cHHHHHHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH---CCCcEEEECCCCH
Confidence 11122221 2357799999999875432 22334444433211 1345666555555
Q ss_pred hhHHh
Q psy1604 395 ETIQK 399 (693)
Q Consensus 395 ~~~~~ 399 (693)
..+..
T Consensus 256 ~~l~~ 260 (450)
T PRK00149 256 KELPG 260 (450)
T ss_pred HHHHH
Confidence 55443
No 238
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.28 E-value=0.1 Score=67.25 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=47.5
Q ss_pred CCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
.+++-|++++..++.. +-.++.++.|+|||.+ +-.++..+.. .+.++++++||..-+..+.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~----------~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE----------QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh----------cCCeEEEEeCCHHHHHHHHHH
Confidence 5889999999998865 5788999999999986 4445444332 234799999998777666554
No 239
>KOG0335|consensus
Probab=95.27 E-value=0.045 Score=58.78 Aligned_cols=121 Identities=41% Similarity=0.623 Sum_probs=89.2
Q ss_pred hhhhchhhhHHHHhhccccccceeEEEechhhhhhh-cCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEE
Q psy1604 404 ILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD-MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIA 482 (693)
Q Consensus 404 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~ 482 (693)
+++.+|+++..++....+.+...+++++||.+++++ +++..++..+.....++...+++.++|++|+|..++......
T Consensus 205 IlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~f- 283 (482)
T KOG0335|consen 205 ILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADF- 283 (482)
T ss_pred EEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHH-
Confidence 445668899999999999999999999999999999 999999999999999999999999999999999885311100
Q ss_pred eecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhC
Q psy1604 483 VGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCET 541 (693)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~ 541 (693)
.. ..-+...+..+... .....+.++||+.......|.+.|...
T Consensus 284 l~-----~~yi~laV~rvg~~-----------~~ni~q~i~~V~~~~kr~~Lldll~~~ 326 (482)
T KOG0335|consen 284 LK-----DNYIFLAVGRVGST-----------SENITQKILFVNEMEKRSKLLDLLNKD 326 (482)
T ss_pred hh-----ccceEEEEeeeccc-----------cccceeEeeeecchhhHHHHHHHhhcc
Confidence 00 00011111111110 023346799999988888888888643
No 240
>PRK06893 DNA replication initiation factor; Validated
Probab=95.23 E-value=0.06 Score=53.53 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=26.6
Q ss_pred CCceeEEEEccchhhhhC-CchHHHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 346 LASVRFVVLDEADRMLDM-GFLGDIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~-~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
+.+.++|||||+|.+... .+...+..++..... ...+++++|++.+
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~---~~~~illits~~~ 135 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE---QGKTLLLISADCS 135 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH---cCCcEEEEeCCCC
Confidence 346789999999987532 233344444543211 1345667777653
No 241
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.07 E-value=0.081 Score=65.53 Aligned_cols=64 Identities=28% Similarity=0.260 Sum_probs=44.8
Q ss_pred CCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQI 290 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 290 (693)
.+++-|++++..++.. +-+++.+..|+|||.. +-.++..+..-.. ..+.+++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~-l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ-FRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH-HHHHHHHHHHHhh------ccCceEEEEechHHHHHHH
Confidence 7899999999999854 7789999999999986 2233332211000 1234789999997766654
No 242
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.03 E-value=0.1 Score=56.79 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=20.0
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcC
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLES 263 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~ 263 (693)
..+++.+++|+|||.. +..+.+.+...
T Consensus 137 n~l~l~G~~G~GKThL-~~ai~~~l~~~ 163 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL-LHAIGNEILEN 163 (405)
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHHHh
Confidence 4578999999999985 45566666543
No 243
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.99 E-value=0.1 Score=61.21 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=53.3
Q ss_pred CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 219 TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
..|+|-|++++... ...++|.|..|||||.+...-+. +|+.... ....++|+|+-|+..|.++.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria-~Li~~~~------v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIA-WLMQVEN------ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHH-HHHHcCC------CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 35899999998753 45899999999999998444444 4443211 122379999999999999999988864
No 244
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.99 E-value=0.065 Score=62.17 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=52.4
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.+++-|++++... ...++|.|..|||||.+...-+.+.+...+ ....++|+|+.|+..|.++.+.+.+..
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-------v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4789999998763 467899999999999985544444443322 122379999999999999988887764
No 245
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.94 E-value=0.12 Score=56.74 Aligned_cols=110 Identities=15% Similarity=0.246 Sum_probs=60.7
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSM 315 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 315 (693)
+.+++.+++|+|||.. +.++.+.+... +.+++++.. ..+..+....+.. +
T Consensus 142 npl~L~G~~G~GKTHL-l~Ai~~~l~~~----------~~~v~yi~~-~~f~~~~~~~l~~--------------~---- 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHL-MQAAVHALRES----------GGKILYVRS-ELFTEHLVSAIRS--------------G---- 191 (445)
T ss_pred ceEEEEcCCCCCHHHH-HHHHHHHHHHc----------CCCEEEeeH-HHHHHHHHHHHhc--------------c----
Confidence 4689999999999975 44555555443 235676653 3444433222210 0
Q ss_pred HHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCC-chHHHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 316 HFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG-FLGDIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 316 ~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~-~~~~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
..+.+.. .+.+.++|+|||+|.+.... ....+..++..... ...++++.|-+.|
T Consensus 192 ---------------~~~~f~~-------~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~---~~k~IIlts~~~p 246 (445)
T PRK12422 192 ---------------EMQRFRQ-------FYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHT---EGKLIVISSTCAP 246 (445)
T ss_pred ---------------hHHHHHH-------HcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHH---CCCcEEEecCCCH
Confidence 0111211 13467899999999886432 24444455443221 2456776666667
Q ss_pred hhHHhh
Q psy1604 395 ETIQKK 400 (693)
Q Consensus 395 ~~~~~~ 400 (693)
..+..+
T Consensus 247 ~~l~~l 252 (445)
T PRK12422 247 QDLKAM 252 (445)
T ss_pred HHHhhh
Confidence 665544
No 246
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.94 E-value=0.16 Score=53.01 Aligned_cols=58 Identities=29% Similarity=0.335 Sum_probs=39.6
Q ss_pred CCHHHHhhhhhh-hcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHH
Q psy1604 221 PTPIQKYAIPAG-LEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELV 287 (693)
Q Consensus 221 p~~~Q~~ai~~i-l~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 287 (693)
+++.|.+.+..+ ..+++++++++||||||.. +-.++..+...+ ...+++++-.+.||.
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~--------~~~rivtIEd~~El~ 191 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD--------PTERVFIIEDTGEIQ 191 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC--------CCceEEEEcCCCccc
Confidence 456777777654 4678999999999999964 555665543222 123688888887773
No 247
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.86 E-value=0.048 Score=54.71 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=41.5
Q ss_pred CCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCC
Q psy1604 192 NPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESP 264 (693)
Q Consensus 192 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~ 264 (693)
..|..+.+|+++++++.+.+.+.. ..-=++|.+|||||||.. +..|+.++.+..
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 347888999999999988884432 222478899999999987 778888886654
No 248
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.85 E-value=0.096 Score=52.29 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=18.3
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
...+++.+|+|+|||.. +..+.+.+.
T Consensus 45 ~~~l~l~Gp~G~GKThL-l~a~~~~~~ 70 (235)
T PRK08084 45 SGYIYLWSREGAGRSHL-LHAACAELS 70 (235)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 35789999999999975 233444443
No 249
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.78 E-value=0.088 Score=56.78 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=25.1
Q ss_pred CCHHHHhhhhhhhcCCCEEEEccCCCChhHHH
Q psy1604 221 PTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 221 p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ 252 (693)
+-......+..+..++++++.+++|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 34445556667778999999999999999864
No 250
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.75 E-value=0.045 Score=52.87 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=26.5
Q ss_pred CceeEEEEccchhhhh-CCchHHHHHHhccCCCCCCCCcceEEeeccCchhHH
Q psy1604 347 ASVRFVVLDEADRMLD-MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQ 398 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~-~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~ 398 (693)
+++++|+||-+-+... ......+..++... .+..-.+.+|||...+..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~----~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEAL----NPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH----SSSEEEEEEEGGGGGHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhc----CCccceEEEecccChHHH
Confidence 4567888888865431 22234444444432 135567888999765443
No 251
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.74 E-value=0.24 Score=52.00 Aligned_cols=42 Identities=19% Similarity=0.049 Sum_probs=30.6
Q ss_pred CCCHHHHhhhhhhhcC----CCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 220 KPTPIQKYAIPAGLEG----RDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g----~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
.++|||...+..+... +-.++.+|.|+|||..+.. +...++.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcC
Confidence 3579999999888754 3588999999999986443 3444443
No 252
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.73 E-value=0.14 Score=64.45 Aligned_cols=65 Identities=26% Similarity=0.251 Sum_probs=45.9
Q ss_pred CCCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQI 290 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 290 (693)
..+++.|++|+..++.+ +-++|.+..|+|||.. +-.++..+..-.. ..+.+++.++||-.-+..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~~------~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLPE------SERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhhc------ccCceEEEECCcHHHHHHH
Confidence 36899999999999974 5788999999999986 3344443321110 1234689999997666554
No 253
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.67 E-value=0.18 Score=58.82 Aligned_cols=70 Identities=20% Similarity=0.133 Sum_probs=52.0
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.+++-|++++.. ...+++|.|..|||||.+.+.-+.+.+...+ ....++|+|+.|+..+.++.+.+.+..
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-------~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-------YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 378899998865 3468999999999999985444444443222 122379999999999999998887754
No 254
>PRK05642 DNA replication initiation factor; Validated
Probab=94.65 E-value=0.11 Score=51.71 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=17.9
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
..+++.+++|+|||.- +..+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~~ 70 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRFE 70 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5688999999999974 334444443
No 255
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.59 E-value=0.2 Score=46.25 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=13.8
Q ss_pred CceeEEEEccchhhhhC
Q psy1604 347 ASVRFVVLDEADRMLDM 363 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~~ 363 (693)
.+.+++|+||.+.+.+.
T Consensus 84 ~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 84 GGDDLIILDELTRLVRA 100 (165)
T ss_pred CCCEEEEEEcHHHHHHH
Confidence 56789999999988643
No 256
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.57 E-value=0.053 Score=55.70 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=45.8
Q ss_pred hCCCCCCCHHHHhhhhhhhcCC-CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHH
Q psy1604 215 KSNYTKPTPIQKYAIPAGLEGR-DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQ 289 (693)
Q Consensus 215 ~~g~~~p~~~Q~~ai~~il~g~-~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q 289 (693)
-..|..+++-|...+..+...+ |+++++.||||||.. +-++..... ..-+++++-.|.||-.+
T Consensus 152 li~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~----------~~eRvItiEDtaELql~ 215 (355)
T COG4962 152 LIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFID----------SDERVITIEDTAELQLA 215 (355)
T ss_pred HHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCC----------CcccEEEEeehhhhccC
Confidence 3467889999999998888765 999999999999983 333322221 12278999998888554
No 257
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.56 E-value=0.03 Score=63.12 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=72.0
Q ss_pred CCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHH-HHHH
Q psy1604 220 KPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHE-VACK 296 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~-~~~~ 296 (693)
..+|||.+.+..+-.. +.+.++.++-+|||.+.+..+...+...+ ..+|++.||..++..+.+ .+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P----------~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDP----------GPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCC----------CCEEEEEEcHHHHHHHHHHHHHH
Confidence 6789999999888754 68899999999999964444443333333 248999999999998863 3433
Q ss_pred HhcCCC-eeEEEEeC----CCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhh
Q psy1604 297 YAYSSV-LKICLHYG----GASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRML 361 (693)
Q Consensus 297 ~~~~~~-l~~~~~~g----g~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~ 361 (693)
...... ++- .+.. ........+.+. +..+.++....-. .+.-..+++|++||+|.+.
T Consensus 86 mi~~sp~l~~-~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 86 MIRASPVLRR-KLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPS------NLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHhCHHHHH-HhCchhhcccCCchhheecC-CCEEEEEeCCCCc------ccccCCcCEEEEechhhcc
Confidence 322111 110 1111 011111111112 3444444332221 1233568899999999985
No 258
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.49 E-value=0.14 Score=57.55 Aligned_cols=111 Identities=16% Similarity=0.154 Sum_probs=61.4
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHH
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMH 316 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~ 316 (693)
.+++.+++|+|||.. +..+.+.+.... .+.+++++. ..+++.+....+..-
T Consensus 316 pL~LyG~sGsGKTHL-L~AIa~~a~~~~--------~g~~V~Yit-aeef~~el~~al~~~------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHL-LHAIGHYARRLY--------PGTRVRYVS-SEEFTNEFINSIRDG------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHH-HHHHHHHHHHhC--------CCCeEEEee-HHHHHHHHHHHHHhc-------------------
Confidence 489999999999984 445555554321 123566654 445555443332110
Q ss_pred HHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCC-chHHHHHHhccCCCCCCCCcceEEeeccCch
Q psy1604 317 FNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG-FLGDIQHVMQHSTMPDVANRQTLMFSATFPE 395 (693)
Q Consensus 317 ~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~-~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~ 395 (693)
..+.+.. .+.++++||||++|.+.... ....+..+++... ..+.++|+.|-..|.
T Consensus 367 --------------~~~~f~~-------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~---e~gk~IIITSd~~P~ 422 (617)
T PRK14086 367 --------------KGDSFRR-------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLH---NANKQIVLSSDRPPK 422 (617)
T ss_pred --------------cHHHHHH-------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHH---hcCCCEEEecCCChH
Confidence 0111111 13467899999999886432 2344445554332 124677776766666
Q ss_pred hHHhh
Q psy1604 396 TIQKK 400 (693)
Q Consensus 396 ~~~~~ 400 (693)
++..+
T Consensus 423 eL~~l 427 (617)
T PRK14086 423 QLVTL 427 (617)
T ss_pred hhhhc
Confidence 65443
No 259
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.49 E-value=0.23 Score=51.69 Aligned_cols=44 Identities=32% Similarity=0.484 Sum_probs=31.7
Q ss_pred CCCCCHHHHhhhhhhhc----CC---CEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 218 YTKPTPIQKYAIPAGLE----GR---DLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 218 ~~~p~~~Q~~ai~~il~----g~---~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
+..++|||..++..+.. ++ -+++.+|.|+||+..+.. +.+.++.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhC
Confidence 34688999999887763 32 588999999999986433 4444444
No 260
>KOG0989|consensus
Probab=94.46 E-value=0.099 Score=52.65 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=28.1
Q ss_pred cCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeecc
Q psy1604 344 ISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSAT 392 (693)
Q Consensus 344 ~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT 392 (693)
.....+++|||||||.|.... +..+.+.+.... ....+++...-
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s----~~trFiLIcny 168 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDFS----RTTRFILICNY 168 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhccc----cceEEEEEcCC
Confidence 356678999999999986443 555666666522 23455555544
No 261
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.45 E-value=0.021 Score=53.72 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=53.8
Q ss_pred EEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHH
Q psy1604 239 MGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFN 318 (693)
Q Consensus 239 lv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 318 (693)
++.|+=|-|||.+.-+.+.. +... ...+++|.+|+.+-++.+++.+.+-....+.+..... ......
T Consensus 1 VltA~RGRGKSa~lGl~~a~-l~~~---------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~ 67 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAA-LIQK---------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQII 67 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCC-SSS--------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHH-HHHh---------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccc---cccccc
Confidence 57899999999975444332 2221 1247999999999888877766554332222210000 000000
Q ss_pred HHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 319 RQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 319 ~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
........|-+..|..+... ....++||||||=.+. -+.+..++.. ...++||.|..
T Consensus 68 ~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~--------~~~vv~stTi~ 124 (177)
T PF05127_consen 68 KLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRR--------FPRVVFSTTIH 124 (177)
T ss_dssp -----CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCC--------SSEEEEEEEBS
T ss_pred ccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhh--------CCEEEEEeecc
Confidence 01112456777777766432 2245899999998653 4555666543 33567788863
No 262
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.55 Score=49.49 Aligned_cols=91 Identities=20% Similarity=0.312 Sum_probs=56.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGAS 313 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~ 313 (693)
.|.-+++-+.+|.|||.. +|-+...+-.. .++||++= -|...|+.-...++.-..
T Consensus 92 ~Gs~iLIgGdPGIGKSTL-LLQva~~lA~~-----------~~vLYVsG-EES~~QiklRA~RL~~~~------------ 146 (456)
T COG1066 92 PGSVILIGGDPGIGKSTL-LLQVAARLAKR-----------GKVLYVSG-EESLQQIKLRADRLGLPT------------ 146 (456)
T ss_pred cccEEEEccCCCCCHHHH-HHHHHHHHHhc-----------CcEEEEeC-CcCHHHHHHHHHHhCCCc------------
Confidence 556788999999999986 55555555332 26898876 477789988888875221
Q ss_pred hHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhh
Q psy1604 314 SMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 314 ~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~ 362 (693)
.++.+...-.+.+.+.. +.-.+.+++|+|=++.+..
T Consensus 147 -----------~~l~l~aEt~~e~I~~~--l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 147 -----------NNLYLLAETNLEDIIAE--LEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred -----------cceEEehhcCHHHHHHH--HHhcCCCEEEEeccceeec
Confidence 12333322223222221 1124667899998887764
No 263
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.29 E-value=0.3 Score=53.64 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=25.3
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcC
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAP 282 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~P 282 (693)
..+++.+++|+|||.. +..+.+.+.... .+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHL-l~ai~~~l~~~~--------~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL-LQSIGNYVVQNE--------PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHH-HHHHHHHHHHhC--------CCCeEEEEEH
Confidence 4689999999999985 445555555432 1235777654
No 264
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.22 E-value=0.4 Score=54.84 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=89.9
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcC
Q psy1604 205 LREILVKNLKKSNYTKPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAP 282 (693)
Q Consensus 205 l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~P 282 (693)
.++...+.+.....+.+..-|.+.+..+++. +-+++.|.=|=|||.+.-+.+.. +.... ...+++|.+|
T Consensus 199 ~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~--------~~~~iiVTAP 269 (758)
T COG1444 199 LDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLA--------GSVRIIVTAP 269 (758)
T ss_pred CCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhc--------CCceEEEeCC
Confidence 3333444455555556666666666666654 36788999999999987766532 21111 1237999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhh
Q psy1604 283 TRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 283 tr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~ 362 (693)
+.+-++.+++.+.+-....+.+-.+....... ......+...|=+-+|.... ..-++||||||=.+.
T Consensus 270 ~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp- 336 (758)
T COG1444 270 TPANVQTLFEFAGKGLEFLGYKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP- 336 (758)
T ss_pred CHHHHHHHHHHHHHhHHHhCCccccccccccc--eeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC-
Confidence 99988888777665443333222111111000 00000112235555564442 116799999997552
Q ss_pred CCchHHHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 363 MGFLGDIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 363 ~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
-+.+.+++. ..+.++||.|+.
T Consensus 337 ---lplL~~l~~--------~~~rv~~sTTIh 357 (758)
T COG1444 337 ---LPLLHKLLR--------RFPRVLFSTTIH 357 (758)
T ss_pred ---hHHHHHHHh--------hcCceEEEeeec
Confidence 445555553 335788999973
No 265
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.21 E-value=0.46 Score=45.33 Aligned_cols=49 Identities=18% Similarity=0.088 Sum_probs=33.1
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 238 LMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 238 vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
+++.+++|+|||...+-.+...+ +. +.++++++. .+...++.+.+..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~----------g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-AR----------GEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HC----------CCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 68999999999987554444444 22 235777754 466777777776653
No 266
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.17 E-value=0.13 Score=53.82 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.3
Q ss_pred CCEEEEccCCCChhHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFL 253 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~l 253 (693)
.++|+.+|+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 478999999999998543
No 267
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.15 E-value=0.23 Score=49.16 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ 252 (693)
....+++.+++|+|||..+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999863
No 268
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.07 E-value=0.34 Score=52.49 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=19.9
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
.++++.+++|+|||.. +..+++.+..
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~~ 81 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELEE 81 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 5799999999999996 4455555543
No 269
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.06 E-value=0.16 Score=52.85 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=40.3
Q ss_pred CCHHHHhhhhhhh-cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHH
Q psy1604 221 PTPIQKYAIPAGL-EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELV 287 (693)
Q Consensus 221 p~~~Q~~ai~~il-~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 287 (693)
+++.|...+..+. .+.+++++++||||||.. +-.++..+...+. ..+++.+=.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~--------~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASAP--------EDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCC--------CceEEEecCCcccc
Confidence 5577777766655 467999999999999985 4556665543321 23678888787774
No 270
>KOG4198|consensus
Probab=94.04 E-value=0.026 Score=56.28 Aligned_cols=35 Identities=40% Similarity=0.857 Sum_probs=30.3
Q ss_pred CCCCCCccee-cCCCCCcccCcccccCCCCCCCCCC
Q psy1604 101 GNSKPGDWMC-SCGASNFAKRDACFKCSEPKPEGAG 135 (693)
Q Consensus 101 ~~~~~gdw~~-~c~~~n~~~r~~c~~c~~~~~~~~~ 135 (693)
...++|||.| .|+.+||++|..|++|+.+++.-..
T Consensus 58 ~~~~pgdw~c~~c~~~n~arr~~c~~c~~s~~~~~~ 93 (280)
T KOG4198|consen 58 DPPRPGDWNCPLCGFHNSARRLLCFRCGFSKVPLDS 93 (280)
T ss_pred CCCCCcccccCccchhhHHHhhhcceecccCCCccc
Confidence 3457899999 4999999999999999999887544
No 271
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.99 E-value=0.31 Score=56.55 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=63.7
Q ss_pred CCCcEEEEecChHhHHHHHHHHhh-CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEE
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCE-TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVIN 592 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~-~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~ 592 (693)
.+.++||.++++..+..+.+.|++ .+..+..+||+++..+|.+.+.+...|..+|+|+|..+.. +.+.++.+||.
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVv 264 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIV 264 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEE
Confidence 356899999999999999999976 4778999999999999999999999999999999974332 55677887774
No 272
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.93 E-value=0.44 Score=55.22 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=17.3
Q ss_pred EEEEccCCCChhHHHHHHHHHHhh
Q psy1604 238 LMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 238 vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
++|.++||+|||++ +..++..|.
T Consensus 784 LYIyG~PGTGKTAT-VK~VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTAT-VYSVIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHH
Confidence 35999999999998 444555554
No 273
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.91 E-value=0.18 Score=53.42 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=17.0
Q ss_pred cCCCEEEEccCCCChhHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll 254 (693)
++..+++.+|||+|||.....
T Consensus 136 ~g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356899999999999987433
No 274
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.88 E-value=0.33 Score=49.43 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=32.9
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcC-CCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLES-PGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~-~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
.++++.++|+.|||... +++... +..........|-+++-+|...-....+..+-.
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 58999999999999953 333222 111111112235667778877666666655544
No 275
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.88 E-value=0.28 Score=57.80 Aligned_cols=71 Identities=24% Similarity=0.227 Sum_probs=53.0
Q ss_pred CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 219 TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
..|+|-|++++... ..+++|.|..|||||.+...-+.+.+...+ ....++|+++-|+..|..+.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-------i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-------VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-------CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 36899999999753 468999999999999985544444443222 112379999999999999988887764
No 276
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.85 E-value=0.29 Score=54.70 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=63.0
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhC-CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEE
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCET-EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVIN 592 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~-~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~ 592 (693)
.+.++||.++++..+..+++.|++. +..+..+||+++..+|.+.+.+..+|+.+|+|+|..+-. +.+.++.+||.
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 4568999999999999999999764 677899999999999999999999999999999965432 45677787774
No 277
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.84 E-value=0.36 Score=55.45 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhC-C-CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcc
Q psy1604 503 QQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCET-E-IATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVA 578 (693)
Q Consensus 503 ~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~-~-~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~ 578 (693)
..|.+.+++++.. ..++++||.++....+..+.+.|++. + ..+..+|++++..+|.+.+.+.++|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 3577777776665 35677999999999999999999865 3 568999999999999999999999999999999764
Q ss_pred cccCCCCCCCEEEEcC
Q psy1604 579 SRGLDIKGIRHVINYD 594 (693)
Q Consensus 579 ~~GiDip~v~~VI~~d 594 (693)
.- .-+++..+||..+
T Consensus 251 vF-aP~~~LgLIIvdE 265 (665)
T PRK14873 251 VF-APVEDLGLVAIWD 265 (665)
T ss_pred EE-eccCCCCEEEEEc
Confidence 32 4667777777533
No 278
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.84 E-value=0.23 Score=53.90 Aligned_cols=146 Identities=12% Similarity=0.172 Sum_probs=78.9
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHH-HHHHHHHHHHHHhcCCCeeEEEEeCCCChH
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRE-LVMQIHEVACKYAYSSVLKICLHYGGASSM 315 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~-La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 315 (693)
-.++.+..|||||.+..+.++..++..+ .+.+++++-|+.. |...++..+.......++....-....+..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~ 74 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK--------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSME 74 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC--------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccE
Confidence 3578899999999998888887777641 1247899989887 666677777655443333211111111000
Q ss_pred HHHHHHhc-CCcEEEech-hhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccC
Q psy1604 316 HFNRQLEK-GCNILVATM-GRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATF 393 (693)
Q Consensus 316 ~~~~~~~~-~~~IlV~Tp-~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~ 393 (693)
. .+.. +..|++..- +...+ +. ....+.++.+|||..+... .+..++..++.+ .....+++|.+|
T Consensus 75 --i-~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~--~~~~~i~~t~NP 140 (396)
T TIGR01547 75 --I-KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRET--GGKKFIIFSSNP 140 (396)
T ss_pred --E-EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhcc--CCccEEEEEcCc
Confidence 0 0111 334555433 22211 11 2234689999999987533 333343332211 122257888887
Q ss_pred chhHHhhhhhh
Q psy1604 394 PETIQKKGCNI 404 (693)
Q Consensus 394 ~~~~~~~~~~~ 404 (693)
+.....+...+
T Consensus 141 ~~~~~w~~~~f 151 (396)
T TIGR01547 141 ESPLHWVKKRF 151 (396)
T ss_pred CCCccHHHHHH
Confidence 65333333333
No 279
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.77 E-value=0.23 Score=52.50 Aligned_cols=120 Identities=21% Similarity=0.222 Sum_probs=63.7
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhh-cCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCC
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLL-ESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGAS 313 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~-~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~ 313 (693)
++.+++.+|||.|||.+ +.-+..++. ... ...-.||...|--.. -++.++.|+...++.+.
T Consensus 203 ~~vi~LVGPTGVGKTTT-lAKLAar~~~~~~--------~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~------- 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTT-LAKLAARYVMLKK--------KKKVAIITTDTYRIG--AVEQLKTYADIMGVPLE------- 264 (407)
T ss_pred CcEEEEECCCCCcHHHH-HHHHHHHHHhhcc--------CcceEEEEeccchhh--HHHHHHHHHHHhCCceE-------
Confidence 67889999999999987 333333332 221 222356665553222 12445555544444333
Q ss_pred hHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhh-hCCchHHHHHHhccCCCCCCCCcceEEeecc
Q psy1604 314 SMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRML-DMGFLGDIQHVMQHSTMPDVANRQTLMFSAT 392 (693)
Q Consensus 314 ~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~-~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT 392 (693)
++-+|.-|...+. .+.++++|.||=+-+-. |......+..++... ....-.+.+|||
T Consensus 265 --------------vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~----~~i~~~Lvlsat 322 (407)
T COG1419 265 --------------VVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVS----HSIEVYLVLSAT 322 (407)
T ss_pred --------------EecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhcc----ccceEEEEEecC
Confidence 3345666655554 35667888888775421 112233333444332 123456778888
Q ss_pred Cc
Q psy1604 393 FP 394 (693)
Q Consensus 393 ~~ 394 (693)
..
T Consensus 323 ~K 324 (407)
T COG1419 323 TK 324 (407)
T ss_pred cc
Confidence 53
No 280
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.59 E-value=0.28 Score=49.81 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCChhHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ 252 (693)
..++++.+|+|+|||..+
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 357999999999999864
No 281
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.59 E-value=0.37 Score=52.87 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCChhHHHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll 254 (693)
++-+++.+|||+|||.+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CcEEEEECCCCccHHHHHHH
Confidence 45688999999999987433
No 282
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.53 E-value=0.72 Score=52.05 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=41.8
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
+.+-.++.+|=|.|||.+..+.+...+... +.+|++.+|...-+.++++.++++..
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f~----------Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISFL----------EIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHhc----------CCeEEEECCChhhHHHHHHHHHHHHH
Confidence 456778889999999988555544333211 34799999999999999988877664
No 283
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.40 E-value=0.38 Score=52.85 Aligned_cols=89 Identities=25% Similarity=0.221 Sum_probs=58.7
Q ss_pred CHHHHHHHHhCCCCCCCHH----HHhhhhhhh--cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEE
Q psy1604 206 REILVKNLKKSNYTKPTPI----QKYAIPAGL--EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVII 279 (693)
Q Consensus 206 ~~~l~~~l~~~g~~~p~~~----Q~~ai~~il--~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLi 279 (693)
.+-|...|.+.--.+++.+ |++-=..+. .++-++|++..|||||.+++.-+...++..... .....|||
T Consensus 191 dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~-----l~~k~vlv 265 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP-----LQAKPVLV 265 (747)
T ss_pred HHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccc-----cccCceEE
Confidence 3445556665444444332 443333333 456789999999999999877666666655443 23334999
Q ss_pred EcCCHHHHHHHHHHHHHHhc
Q psy1604 280 CAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 280 l~Ptr~La~Q~~~~~~~~~~ 299 (693)
+.|.+.+..-+...+-.++.
T Consensus 266 l~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 266 LGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EcCcHHHHHHHHHhchhhcc
Confidence 99999999888887777653
No 284
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.19 E-value=0.32 Score=51.98 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=35.2
Q ss_pred ceeEEEEccchhhhhC-CchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhh
Q psy1604 348 SVRFVVLDEADRMLDM-GFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKK 400 (693)
Q Consensus 348 ~~~~lVlDEah~l~~~-~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~ 400 (693)
++++++||.++.+... .....+..+++..... ..|+++.|-.+|.++..+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~---~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN---GKQIVLTSDRPPKELNGL 225 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc---CCEEEEEcCCCchhhccc
Confidence 7889999999988654 3455566666554322 458898888888876654
No 285
>CHL00181 cbbX CbbX; Provisional
Probab=93.12 E-value=0.72 Score=47.48 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCChhHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFL 253 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~l 253 (693)
.+.++++.+|+|+|||..+-
T Consensus 58 ~~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35579999999999998643
No 286
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.04 E-value=0.58 Score=53.66 Aligned_cols=27 Identities=11% Similarity=0.329 Sum_probs=18.4
Q ss_pred CceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 347 ASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
.+++++||||+|+|.... ...+.++++
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLE 144 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLE 144 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHH
Confidence 467899999999986544 333444444
No 287
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.00 E-value=0.29 Score=63.20 Aligned_cols=62 Identities=34% Similarity=0.313 Sum_probs=44.0
Q ss_pred CCCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHH---HHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFL---IPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQI 290 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~l---l~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 290 (693)
..+++.|++|+..++.+ +-+++.+..|+|||.... -++.+.+ .. .+.+++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~~---------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-ES---------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-Hh---------cCCeEEEEeChHHHHHHH
Confidence 46899999999998865 567789999999998631 2233222 21 234789999997666554
No 288
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.98 E-value=0.3 Score=56.71 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=57.6
Q ss_pred HHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCC-----CceEE-ecCCCCHHHHHHHHHHHhcCCCcEEEEeCcc
Q psy1604 507 KKLLELLREKDEDGVIVFVSTIRNADFIACYLCETE-----IATTS-IHGSRLQSQREQAIHDFKTKKMKVLVATAVA 578 (693)
Q Consensus 507 ~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~-----~~v~~-lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~ 578 (693)
-.+..+.-...+.++++.++|..-+.+.++.|++.. +.+.. +|+.|+..++++++++|.+|+.+|||+|+..
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 344455555566899999999999888888886542 44333 9999999999999999999999999999754
No 289
>PF13173 AAA_14: AAA domain
Probab=92.98 E-value=0.63 Score=41.43 Aligned_cols=26 Identities=8% Similarity=0.386 Sum_probs=19.5
Q ss_pred ceeEEEEccchhhhhCCchHHHHHHhcc
Q psy1604 348 SVRFVVLDEADRMLDMGFLGDIQHVMQH 375 (693)
Q Consensus 348 ~~~~lVlDEah~l~~~~~~~~i~~i~~~ 375 (693)
.-.+|+|||+|++. ++...+..+...
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~ 86 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDN 86 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHh
Confidence 45689999999984 566677776664
No 290
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.95 E-value=0.81 Score=48.96 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=19.4
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
.++++.+|+|+|||.. +-.+++.+.
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999986 445555554
No 291
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.88 E-value=0.28 Score=52.07 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=21.2
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
.+..+++++|||||||.. +..++..+..
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 456799999999999986 4556665543
No 292
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.86 E-value=0.34 Score=49.54 Aligned_cols=55 Identities=18% Similarity=0.070 Sum_probs=32.0
Q ss_pred hhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 231 AGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 231 ~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
-+..+.-+++.|++|+|||...+..+.+.+... +.+++++.- -+-..++...+..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~----------g~~vl~iS~-E~~~~~~~~r~~~ 80 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQH----------GVRVGTISL-EEPVVRTARRLLG 80 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc----------CceEEEEEc-ccCHHHHHHHHHH
Confidence 345677899999999999986444333333221 235777753 2234444444433
No 293
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.76 E-value=0.33 Score=56.53 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=64.5
Q ss_pred CCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-ccccCCCCCCCEEE
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-ASRGLDIKGIRHVI 591 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-~~~GiDip~v~~VI 591 (693)
.+.+++|.++++.-|...++.+++ .++.+..+||+++..+|.++++...+|+.+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 466899999999999887776654 4688999999999999999999999999999999964 45567788888877
Q ss_pred E
Q psy1604 592 N 592 (693)
Q Consensus 592 ~ 592 (693)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 3
No 294
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.73 E-value=0.73 Score=50.55 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=83.9
Q ss_pred CCCHHHHhhhhhhhc------C----CCEEEEccCCCChhHHHH-HHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHH
Q psy1604 220 KPTPIQKYAIPAGLE------G----RDLMGCAQTGSGKTAAFL-IPIMHHLLESPGELVTGYCAQPEVIICAPTRELVM 288 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~------g----~~vlv~a~TGsGKTl~~l-l~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~ 288 (693)
.+-|||+-++-.+.- + +..++..|=+-|||..+. +.+...+... ..+..+.|++|+.+-+.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--------~~~~~~~i~A~s~~qa~ 132 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--------RSGAGIYILAPSVEQAA 132 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--------hcCCcEEEEeccHHHHH
Confidence 678999999988871 1 357889999999996543 3333333333 23457999999999998
Q ss_pred HHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH---HHHHhc--CCcCCCceeEEEEccchhhhhC
Q psy1604 289 QIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL---KDILDR--GRISLASVRFVVLDEADRMLDM 363 (693)
Q Consensus 289 Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L---~~~l~~--~~~~l~~~~~lVlDEah~l~~~ 363 (693)
+.+..++....... ..........+-...+.... +..+.. +...-.+..+.|+||.|...+.
T Consensus 133 ~~F~~ar~mv~~~~-------------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 133 NSFNPARDMVKRDD-------------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred HhhHHHHHHHHhCc-------------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH
Confidence 88887766543221 00111111122222222222 222222 2233446789999999977554
Q ss_pred CchHHHHHHhccCCCCCCCCcceEEeec
Q psy1604 364 GFLGDIQHVMQHSTMPDVANRQTLMFSA 391 (693)
Q Consensus 364 ~~~~~i~~i~~~~~~~~~~~~q~lllSA 391 (693)
+ ..+..+..- +..+++.+++..|-
T Consensus 200 ~--~~~~~~~~g--~~ar~~~l~~~ITT 223 (546)
T COG4626 200 E--DMYSEAKGG--LGARPEGLVVYITT 223 (546)
T ss_pred H--HHHHHHHhh--hccCcCceEEEEec
Confidence 2 333333322 33445677776664
No 295
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.69 E-value=0.19 Score=47.80 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=29.3
Q ss_pred hhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHH
Q psy1604 231 AGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQI 290 (693)
Q Consensus 231 ~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 290 (693)
.+.+++++++.+++|+|||.. +..+...+...+ ..++++ +..+|...+
T Consensus 43 ~~~~~~~l~l~G~~G~GKThL-a~ai~~~~~~~g----------~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHL-AVAIANEAIRKG----------YSVLFI-TASDLLDEL 90 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHH-HHHHHHHHHHTT------------EEEE-EHHHHHHHH
T ss_pred CcccCeEEEEEhhHhHHHHHH-HHHHHHHhccCC----------cceeEe-ecCceeccc
Confidence 344678999999999999986 445555565543 245554 455666554
No 296
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.64 E-value=0.37 Score=52.88 Aligned_cols=53 Identities=21% Similarity=0.207 Sum_probs=34.5
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.+.-+++.+++|+|||...+..+ ..+... +.+++++.- .+-..|+...+.++.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a-~~~a~~----------g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVA-ARLAAA----------GGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HHHHhc----------CCeEEEEEc-cccHHHHHHHHHHcC
Confidence 46678999999999998644333 333222 236788774 455677777666654
No 297
>KOG0991|consensus
Probab=92.63 E-value=0.33 Score=46.92 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=19.7
Q ss_pred CCceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 346 LASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
....+.||+||||.|. .+..+.++..+.
T Consensus 111 ~grhKIiILDEADSMT-~gAQQAlRRtME 138 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMT-AGAQQALRRTME 138 (333)
T ss_pred CCceeEEEeeccchhh-hHHHHHHHHHHH
Confidence 3567899999999985 344555555544
No 298
>KOG0339|consensus
Probab=92.53 E-value=0.56 Score=50.27 Aligned_cols=53 Identities=47% Similarity=0.775 Sum_probs=44.6
Q ss_pred hhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhc
Q psy1604 400 KGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQH 452 (693)
Q Consensus 400 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 452 (693)
....+++.+|+|+.+++......+....++++|+.++++++++......+..+
T Consensus 345 ~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~h 397 (731)
T KOG0339|consen 345 EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQH 397 (731)
T ss_pred cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhh
Confidence 34567788999999999999999999999999999999999987666554433
No 299
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.40 E-value=0.87 Score=53.69 Aligned_cols=28 Identities=14% Similarity=0.415 Sum_probs=19.4
Q ss_pred CceeEEEEccchhhhhCCchHHHHHHhcc
Q psy1604 347 ASVRFVVLDEADRMLDMGFLGDIQHVMQH 375 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~~~~~~~i~~i~~~ 375 (693)
.+++++||||+|+|.... ...+.++++.
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEE 146 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEE 146 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhC
Confidence 568999999999996543 3344555543
No 300
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.40 E-value=0.34 Score=50.22 Aligned_cols=58 Identities=24% Similarity=0.356 Sum_probs=37.7
Q ss_pred CCHHHHhhhhhhh-cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHH
Q psy1604 221 PTPIQKYAIPAGL-EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELV 287 (693)
Q Consensus 221 p~~~Q~~ai~~il-~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 287 (693)
+++.|.+.+..+. .+++++++++||||||.. +-.++..+...+ ...+++++-.+.||.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~--------~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND--------PTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC--------CCceEEEECCchhhc
Confidence 3344555554444 567999999999999985 455555553321 123688888887774
No 301
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.34 E-value=0.74 Score=50.16 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=18.0
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
..+++++++|+|||.+... +...+..
T Consensus 96 ~vI~lvG~~GsGKTTtaak-LA~~L~~ 121 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAK-LARYFKK 121 (437)
T ss_pred eEEEEECCCCCcHHHHHHH-HHHHHHH
Confidence 4688999999999987433 3344433
No 302
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.33 E-value=0.71 Score=51.91 Aligned_cols=133 Identities=15% Similarity=0.118 Sum_probs=78.5
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCC--CeeEEEEeCCC
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSS--VLKICLHYGGA 312 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~--~l~~~~~~gg~ 312 (693)
.+-.++..|==.|||.... +++..++.. ..+.++++++|.+..++.+++++..+.... ...+..+.| .
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s--------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e 323 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT--------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-E 323 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh--------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-c
Confidence 4667888999999998644 666655543 124589999999999999999988765321 111111222 1
Q ss_pred ChHHHHHHHhcC--CcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEee
Q psy1604 313 SSMHFNRQLEKG--CNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFS 390 (693)
Q Consensus 313 ~~~~~~~~~~~~--~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllS 390 (693)
.. ...+.++ ..|.++|- -..+...=.+++++|||||+-+.+..+...+ -.+. ..+.+++++|
T Consensus 324 ~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~------~~n~k~I~IS 387 (738)
T PHA03368 324 TI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLN------QTNCKIIFVS 387 (738)
T ss_pred EE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHh------ccCccEEEEe
Confidence 11 0011112 24444422 1122234457999999999988654333222 2222 1377889998
Q ss_pred ccC
Q psy1604 391 ATF 393 (693)
Q Consensus 391 AT~ 393 (693)
.|-
T Consensus 388 S~N 390 (738)
T PHA03368 388 STN 390 (738)
T ss_pred cCC
Confidence 873
No 303
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.28 E-value=0.4 Score=51.06 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=32.2
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
.++.++++++.+++.+. ..+..+++++|||||||.. +..++..+..
T Consensus 130 ~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 130 PDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 35777888887655432 1334689999999999986 5566666654
No 304
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.22 E-value=1 Score=47.15 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=25.6
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcC--CCEE-EEccCCCChhHH
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEG--RDLM-GCAQTGSGKTAA 251 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g--~~vl-v~a~TGsGKTl~ 251 (693)
++|+++-.++.+.+.+... +.++ .+++ +.+|+|+|||..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~lll~G~~G~GKT~l 59 (316)
T PHA02544 18 STIDECILPAADKETFKSI---------------VKKGRIPNMLLHSPSPGTGKTTV 59 (316)
T ss_pred CcHHHhcCcHHHHHHHHHH---------------HhcCCCCeEEEeeCcCCCCHHHH
Confidence 6677777777777766531 1122 2344 489999999985
No 305
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.20 E-value=1.3 Score=47.87 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=13.8
Q ss_pred CEEEEccCCCChhHHHH
Q psy1604 237 DLMGCAQTGSGKTAAFL 253 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~l 253 (693)
-+++++++|+|||....
T Consensus 102 vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCT 118 (429)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999997633
No 306
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.19 E-value=1.4 Score=46.88 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=61.4
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE-EEEcCC-H-HHHHHHHHHHHHHhcCCCeeEEEEeCCC
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV-IICAPT-R-ELVMQIHEVACKYAYSSVLKICLHYGGA 312 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v-Lil~Pt-r-~La~Q~~~~~~~~~~~~~l~~~~~~gg~ 312 (693)
+.+++.+|||+|||..... +...+...+ .++ ++-+.+ | ..+.|+.. +....+
T Consensus 242 ~vI~LVGptGvGKTTTiaK-LA~~L~~~G----------kkVglI~aDt~RiaAvEQLk~----yae~lg---------- 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK-MAWQFHGKK----------KTVGFITTDHSRIGTVQQLQD----YVKTIG---------- 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHH-HHHHHHHcC----------CcEEEEecCCcchHHHHHHHH----HhhhcC----------
Confidence 5788999999999986333 323333222 233 444433 3 23344333 322222
Q ss_pred ChHHHHHHHhcCCcEE-EechhhHHHHHhcCCcCCCceeEEEEccchhhhhC-CchHHHHHHhccCCCCCCCCcceEEee
Q psy1604 313 SSMHFNRQLEKGCNIL-VATMGRLKDILDRGRISLASVRFVVLDEADRMLDM-GFLGDIQHVMQHSTMPDVANRQTLMFS 390 (693)
Q Consensus 313 ~~~~~~~~~~~~~~Il-V~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~-~~~~~i~~i~~~~~~~~~~~~q~lllS 390 (693)
+.++ +.+|..+.+.+..-. ...++++|+||-+=+.... .....+..++.... +...++.+|
T Consensus 297 ------------ipv~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~----PdevlLVLs 359 (436)
T PRK11889 297 ------------FEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVE----PDYICLTLS 359 (436)
T ss_pred ------------CcEEecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcC----CCeEEEEEC
Confidence 2222 235666666554211 1125789999998765422 12233333333211 233456688
Q ss_pred ccCc-hhHHhhhhh
Q psy1604 391 ATFP-ETIQKKGCN 403 (693)
Q Consensus 391 AT~~-~~~~~~~~~ 403 (693)
||.. ..+......
T Consensus 360 ATtk~~d~~~i~~~ 373 (436)
T PRK11889 360 ASMKSKDMIEIITN 373 (436)
T ss_pred CccChHHHHHHHHH
Confidence 8753 333444333
No 307
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.19 E-value=0.97 Score=47.57 Aligned_cols=41 Identities=22% Similarity=0.077 Sum_probs=28.6
Q ss_pred CCHHHHhhhhhhhc--C---CCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 221 PTPIQKYAIPAGLE--G---RDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 221 p~~~Q~~ai~~il~--g---~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
++|||...+..+.. + +-+++.+|.|.||+..+.. +.+.++.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 36888888777664 2 3688999999999986443 3344444
No 308
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.15 E-value=0.74 Score=47.35 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ 252 (693)
.+.++++.+|+|+|||..+
T Consensus 57 ~~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 3558999999999999864
No 309
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.11 E-value=0.89 Score=48.01 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=17.6
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
++++.+|+|+|||..+ ..+.+.+.
T Consensus 38 ~lll~Gp~GtGKT~la-~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV-RALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHhc
Confidence 6999999999999863 33344443
No 310
>PLN03025 replication factor C subunit; Provisional
Probab=92.10 E-value=0.91 Score=47.63 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=17.5
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.++++.+|+|+|||..+ ..+.+.+
T Consensus 35 ~~lll~Gp~G~GKTtla-~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI-LALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHH
Confidence 46899999999999863 3344444
No 311
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.07 E-value=0.11 Score=49.10 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=31.3
Q ss_pred HHHHHhcCCcEEEechhhHHHHHhcCCcC--CCceeEEEEccchhhhh
Q psy1604 317 FNRQLEKGCNILVATMGRLKDILDRGRIS--LASVRFVVLDEADRMLD 362 (693)
Q Consensus 317 ~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~--l~~~~~lVlDEah~l~~ 362 (693)
..+.....+||+|+++..|++-.....+. ..+-.+|||||||.+.+
T Consensus 112 ~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 112 LARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 44555667999999999988754432221 23457999999999864
No 312
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.06 E-value=1.2 Score=47.27 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=19.2
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcC
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLES 263 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~ 263 (693)
-+++.+|.|+|||..+ ..+...++..
T Consensus 47 a~L~~G~~G~GKttlA-~~lA~~Llc~ 72 (351)
T PRK09112 47 ALLFEGPEGIGKATLA-FHLANHILSH 72 (351)
T ss_pred eEeeECCCCCCHHHHH-HHHHHHHcCC
Confidence 5899999999999763 4455566553
No 313
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.03 E-value=0.59 Score=46.33 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.++.+++.+++|+|||..
T Consensus 41 ~~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 456799999999999975
No 314
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.02 E-value=0.57 Score=48.64 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=21.2
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcC
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLES 263 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~ 263 (693)
++++++.+++|+|||.. +.++.+.+...
T Consensus 156 ~~gl~L~G~~G~GKThL-a~Aia~~l~~~ 183 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL-LAAIANELAKK 183 (306)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHc
Confidence 46899999999999986 44566666543
No 315
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.99 E-value=0.56 Score=49.00 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=27.8
Q ss_pred CCHHHHhhhhhhh----cC---CCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 221 PTPIQKYAIPAGL----EG---RDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 221 p~~~Q~~ai~~il----~g---~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
++|||...+..+. ++ +-.++.+|.|.||+..+.. +.+.++.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~-~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA-LAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH-HHHHHcC
Confidence 4678877777665 33 4678999999999986443 3344443
No 316
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.96 E-value=1.6 Score=48.27 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.3
Q ss_pred CCEEEEccCCCChhHHHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIP 255 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~ 255 (693)
+.+|+++|.|+|||..+.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 36 QSILLVGASGVGKTTCARII 55 (491)
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 46899999999999865443
No 317
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=1.3 Score=47.25 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=21.1
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcC
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLES 263 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~ 263 (693)
.|+++.++||+|||.+ +..++..+...
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHhh
Confidence 4799999999999997 55566666554
No 318
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.92 E-value=0.37 Score=46.96 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=13.8
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
++++.+|+|+|||..
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 689999999999984
No 319
>KOG0741|consensus
Probab=91.91 E-value=0.61 Score=50.46 Aligned_cols=75 Identities=25% Similarity=0.357 Sum_probs=41.1
Q ss_pred cccccCCCccceeeecCCC--------CCCCCCccccC---CCCHHHHHHHHhCCCCCCCH---HHHhhhhhhhcCCCEE
Q psy1604 174 TGINFSGWENVEVKVSGDN--------PPRPIESFESA---GLREILVKNLKKSNYTKPTP---IQKYAIPAGLEGRDLM 239 (693)
Q Consensus 174 ~~~~f~~~~~~~v~~~~~~--------~~~~~~~f~~~---~l~~~l~~~l~~~g~~~p~~---~Q~~ai~~il~g~~vl 239 (693)
+.+.|.+-.+..+...+.+ ...|--.|+++ +|..+.-+.+++.--.+..| +-+-.++ .=+.++
T Consensus 184 T~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~---HVKGiL 260 (744)
T KOG0741|consen 184 TQIVFEKAENSSLNLIGKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK---HVKGIL 260 (744)
T ss_pred cEEEEEeccCcceEeeccccccchhccccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc---ceeeEE
Confidence 4455555554444444442 23444457777 46776666665432222211 1222222 226799
Q ss_pred EEccCCCChhHH
Q psy1604 240 GCAQTGSGKTAA 251 (693)
Q Consensus 240 v~a~TGsGKTl~ 251 (693)
+-+|+|+|||+.
T Consensus 261 LyGPPGTGKTLi 272 (744)
T KOG0741|consen 261 LYGPPGTGKTLI 272 (744)
T ss_pred EECCCCCChhHH
Confidence 999999999996
No 320
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.86 E-value=2.2 Score=48.85 Aligned_cols=27 Identities=7% Similarity=0.270 Sum_probs=18.5
Q ss_pred CceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 347 ASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
..++++||||+|+|.... ...+.+++.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLE 144 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLE 144 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHH
Confidence 467899999999986443 344444554
No 321
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=91.71 E-value=0.69 Score=53.39 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=63.8
Q ss_pred CCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcc-cccCCCCCCCEEE
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVA-SRGLDIKGIRHVI 591 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~-~~GiDip~v~~VI 591 (693)
.+.++++.++++.-|..+++.+++ .++.+..+||+++..+|...++...+|+.+|+|+|..+ ...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 456899999999999888776654 47899999999999999999999999999999999653 4457778888877
Q ss_pred E
Q psy1604 592 N 592 (693)
Q Consensus 592 ~ 592 (693)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 3
No 322
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.68 E-value=1.7 Score=44.73 Aligned_cols=134 Identities=15% Similarity=0.227 Sum_probs=65.5
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEc-CC-HHHHHHHHHHHHHHhcCCCeeEEE-EeCCCC
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICA-PT-RELVMQIHEVACKYAYSSVLKICL-HYGGAS 313 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~-Pt-r~La~Q~~~~~~~~~~~~~l~~~~-~~gg~~ 313 (693)
-+++++-.|+|||.. +.-+.+.+..++. ++++.+ .| |+=|.+ .++.|....+..+.. -+|+.+
T Consensus 141 Vil~vGVNG~GKTTT-IaKLA~~l~~~g~----------~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~~~~G~Dp 206 (340)
T COG0552 141 VILFVGVNGVGKTTT-IAKLAKYLKQQGK----------SVLLAAGDTFRAAAIE---QLEVWGERLGVPVISGKEGADP 206 (340)
T ss_pred EEEEEecCCCchHhH-HHHHHHHHHHCCC----------eEEEEecchHHHHHHH---HHHHHHHHhCCeEEccCCCCCc
Confidence 467889999999987 4445555554432 444443 33 333332 233333334444433 123332
Q ss_pred hHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhC-CchHHHHHHhccCC--CCCCCCcceEEee
Q psy1604 314 SMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDM-GFLGDIQHVMQHST--MPDVANRQTLMFS 390 (693)
Q Consensus 314 ~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~-~~~~~i~~i~~~~~--~~~~~~~q~lllS 390 (693)
.. ...+.++.. ...++++|++|=|-||... +....+.+|.+-.. .+..+..-++.+=
T Consensus 207 Aa------------------VafDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlD 266 (340)
T COG0552 207 AA------------------VAFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLD 266 (340)
T ss_pred HH------------------HHHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEE
Confidence 11 112222211 1245667777777776543 44555555544322 2222333455557
Q ss_pred ccCchhHHhhhhhh
Q psy1604 391 ATFPETIQKKGCNI 404 (693)
Q Consensus 391 AT~~~~~~~~~~~~ 404 (693)
||.-+.-...+..|
T Consensus 267 AttGqnal~QAk~F 280 (340)
T COG0552 267 ATTGQNALSQAKIF 280 (340)
T ss_pred cccChhHHHHHHHH
Confidence 88765544444444
No 323
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.67 E-value=0.79 Score=49.20 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=53.7
Q ss_pred HHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHH
Q psy1604 208 ILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELV 287 (693)
Q Consensus 208 ~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 287 (693)
.+++.+++ .+-.+-..|+++.-..-.|.- .+.+-.|||||...++-+.+.-.+++ .-+++|.+-|+.|+
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knP---------d~~I~~Tfftk~L~ 219 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNP---------DSRIAFTFFTKILA 219 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCCC---------CceEEEEeehHHHH
Confidence 45555544 233444568777655556654 67788999999875554443333333 23799999999999
Q ss_pred HHHHHHHHHHh
Q psy1604 288 MQIHEVACKYA 298 (693)
Q Consensus 288 ~Q~~~~~~~~~ 298 (693)
.++.....+|.
T Consensus 220 s~~r~lv~~F~ 230 (660)
T COG3972 220 STMRTLVPEFF 230 (660)
T ss_pred HHHHHHHHHHH
Confidence 99988887775
No 324
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.60 E-value=1.5 Score=44.56 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=22.0
Q ss_pred CCCHHHHhhhhhhh----cC-CCEEEEccCCCChhHH
Q psy1604 220 KPTPIQKYAIPAGL----EG-RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 220 ~p~~~Q~~ai~~il----~g-~~vlv~a~TGsGKTl~ 251 (693)
.+++.+.+++..+. .+ ..+++.+++|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 44555566655443 22 3588999999999986
No 325
>KOG1513|consensus
Probab=91.58 E-value=0.26 Score=55.40 Aligned_cols=78 Identities=24% Similarity=0.346 Sum_probs=58.7
Q ss_pred HHHhcCCCcEEEEeCcccccCCCCCCCEE--------EEcCCCCChhhhhhhhcccccCCCc-ceEEEEeC--CCCchHH
Q psy1604 562 HDFKTKKMKVLVATAVASRGLDIKGIRHV--------INYDLPQEIDEYVHRIGRTGRVGNK-GRATSFYD--PDQDGAI 630 (693)
Q Consensus 562 ~~F~~g~~~ILVaT~v~~~GiDip~v~~V--------I~~d~p~s~~~y~Qr~GRagR~G~~-G~~~~~~~--~~~d~~~ 630 (693)
++|.+|...|-|-+..++-||-+..-..| |-+.+|||.+.-+|..||+.|.+|- +--++|+- ..-+..+
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRF 930 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRF 930 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHH
Confidence 56889999999999999999999754433 4588999999999999999999763 44455543 2345566
Q ss_pred HHHHHHHHH
Q psy1604 631 AKDLVRILE 639 (693)
Q Consensus 631 ~~~l~~~l~ 639 (693)
+..+.+.|+
T Consensus 931 AS~VAKRLE 939 (1300)
T KOG1513|consen 931 ASIVAKRLE 939 (1300)
T ss_pred HHHHHHHHH
Confidence 666666654
No 326
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=91.54 E-value=17 Score=40.25 Aligned_cols=218 Identities=25% Similarity=0.332 Sum_probs=121.8
Q ss_pred hhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEe
Q psy1604 404 ILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAV 483 (693)
Q Consensus 404 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~ 483 (693)
+++.+|+++..++....+.+..+.++++||.|.+++.++...+..++.... ...+.+.+++|++..+........
T Consensus 128 IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~----~~~q~l~~SAT~~~~~~~l~~~~~- 202 (456)
T PRK10590 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLP----AKRQNLLFSATFSDDIKALAEKLL- 202 (456)
T ss_pred EEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCC----ccCeEEEEeCCCcHHHHHHHHHHc-
Confidence 445667777777777777788999999999999999887766666554321 345778899998775432110000
Q ss_pred ecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCC-CceEEecCCCCHHHHHHHHH
Q psy1604 484 GIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETE-IATTSIHGSRLQSQREQAIH 562 (693)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~-~~v~~lhg~~~~~~R~~~~~ 562 (693)
..+. .+ .+.... .....-...+.|++.....+.+...+.... ..+.++... ...-+.+.+
T Consensus 203 -----~~~~---~i-~~~~~~--------~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t--~~~~~~l~~ 263 (456)
T PRK10590 203 -----HNPL---EI-EVARRN--------TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRT--KHGANHLAE 263 (456)
T ss_pred -----CCCe---EE-EEeccc--------ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCc--HHHHHHHHH
Confidence 0000 00 000000 000111234666776666666666665443 244455443 233334555
Q ss_pred HHhcCCCcEEEEeCccc--------ccCCCCCCCEEEE-------cCCCC--------ChhhhhhhhcccccCCCcceEE
Q psy1604 563 DFKTKKMKVLVATAVAS--------RGLDIKGIRHVIN-------YDLPQ--------EIDEYVHRIGRTGRVGNKGRAT 619 (693)
Q Consensus 563 ~F~~g~~~ILVaT~v~~--------~GiDip~v~~VI~-------~d~p~--------s~~~y~Qr~GRagR~G~~G~~~ 619 (693)
.++...+++..-+.-.. ..+--..++++|- +|+|. -+.+...-+=|+||.|+.|.--
T Consensus 264 ~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G 343 (456)
T PRK10590 264 QLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATG 343 (456)
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCe
Confidence 55554455443332111 1111124566664 44452 3556678899999999999876
Q ss_pred EEeCCCCchHHHHHHHHHHHHcCCCch
Q psy1604 620 SFYDPDQDGAIAKDLVRILEQAGQPVP 646 (693)
Q Consensus 620 ~~~~~~~d~~~~~~l~~~l~~~~~~vp 646 (693)
.-+. --...-...+..+.+....++|
T Consensus 344 ~ai~-l~~~~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 344 EALS-LVCVDEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred eEEE-EecHHHHHHHHHHHHHhcCCCc
Confidence 6665 3355555556666666677774
No 327
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.52 E-value=0.5 Score=54.36 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=75.2
Q ss_pred ccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhC-CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC
Q psy1604 500 VPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCET-EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA 576 (693)
Q Consensus 500 ~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~-~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~ 576 (693)
+....|.+..++++.. ..++.+||.++.+.....+.+.|+.. +.++..+|++++..+|...+.+.++|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 3456677887777776 46678999999999999888888664 78899999999999999999999999999999996
Q ss_pred cccccCCCCCCCEEEE
Q psy1604 577 VASRGLDIKGIRHVIN 592 (693)
Q Consensus 577 v~~~GiDip~v~~VI~ 592 (693)
.+- =.-++++.+||.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 542 245667777763
No 328
>PRK10436 hypothetical protein; Provisional
Probab=91.50 E-value=0.74 Score=50.60 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=30.6
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhh--cCCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGL--EGRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il--~g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
.+++++++++..++.++ .+. .+.-+++++|||||||.. +..++..+.
T Consensus 195 ~~L~~LG~~~~~~~~l~----------------~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 195 LDLETLGMTPAQLAQFR----------------QALQQPQGLILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred CCHHHcCcCHHHHHHHH----------------HHHHhcCCeEEEECCCCCChHHH-HHHHHHhhC
Confidence 35566666665554443 333 344688999999999986 456666653
No 329
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.43 E-value=1.7 Score=38.32 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.6
Q ss_pred eeEEEEccchhhhhCC
Q psy1604 349 VRFVVLDEADRMLDMG 364 (693)
Q Consensus 349 ~~~lVlDEah~l~~~~ 364 (693)
..+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5799999999997665
No 330
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.36 E-value=2.4 Score=42.10 Aligned_cols=54 Identities=9% Similarity=0.011 Sum_probs=33.5
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
..+.-+++.+++|+|||...+..+.. +...+ .++++++. .+-..+..+.+..+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g----------~~~~yi~~-e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQNG----------YSVSYVST-QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHhCC----------CcEEEEeC-CCCHHHHHHHHHHhC
Confidence 45778999999999999864443333 33322 25777774 344455555555543
No 331
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.33 E-value=2.5 Score=39.18 Aligned_cols=55 Identities=13% Similarity=0.300 Sum_probs=36.5
Q ss_pred CCceeEEEEccchhhhhCCc--hHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 346 LASVRFVVLDEADRMLDMGF--LGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~~~--~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
..++++||+||+=...+.++ ...+..++...+ ....+|+.+-.+|+++...+...
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp----~~~evIlTGr~~p~~l~e~AD~V 149 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP----EDLELVLTGRNAPKELIEAADLV 149 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC----CCCEEEEECCCCCHHHHHhCcee
Confidence 45789999999998877665 344444554322 34567777777888777665543
No 332
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.28 E-value=0.63 Score=50.91 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=14.9
Q ss_pred CEEEEccCCCChhHHHHH
Q psy1604 237 DLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll 254 (693)
.+|+.+|.|+|||..+.+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999987443
No 333
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.28 E-value=1.6 Score=40.65 Aligned_cols=28 Identities=14% Similarity=0.412 Sum_probs=19.9
Q ss_pred CceeEEEEccchhhhhCCchHHHHHHhcc
Q psy1604 347 ASVRFVVLDEADRMLDMGFLGDIQHVMQH 375 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~~~~~~~i~~i~~~ 375 (693)
...+++||||||.|... ....+.+++..
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEe 128 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEE 128 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHS
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcC
Confidence 56899999999998543 35566666654
No 334
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.17 E-value=1.6 Score=45.46 Aligned_cols=42 Identities=17% Similarity=0.083 Sum_probs=28.9
Q ss_pred CCCHHHHhhhhhhh----cC---CCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 220 KPTPIQKYAIPAGL----EG---RDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 220 ~p~~~Q~~ai~~il----~g---~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
.++|||...+..+. ++ +-.++.+|.|.||+..+.. +.+.++.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~llC 51 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALLC 51 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHcC
Confidence 46788888877665 23 3689999999999976433 3344443
No 335
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.08 E-value=0.72 Score=53.98 Aligned_cols=27 Identities=7% Similarity=0.229 Sum_probs=18.4
Q ss_pred CceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 347 ASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
...+++||||||+|... ....+.+++.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLE 144 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLE 144 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHh
Confidence 46789999999998533 3444455554
No 336
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.06 E-value=1.1 Score=47.11 Aligned_cols=42 Identities=21% Similarity=0.178 Sum_probs=29.2
Q ss_pred CCCHHHHhhhhhhh----cC---CCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 220 KPTPIQKYAIPAGL----EG---RDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 220 ~p~~~Q~~ai~~il----~g---~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
.++|||...+..+. ++ +-.++.+|.|+||+..+.. +.+.++.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~LlC 50 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLMC 50 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHcC
Confidence 46788888887765 33 3678999999999986443 3344443
No 337
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.01 E-value=1.5 Score=45.89 Aligned_cols=40 Identities=23% Similarity=0.130 Sum_probs=28.3
Q ss_pred CCHHHHhhhhhhhc--C---CCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 221 PTPIQKYAIPAGLE--G---RDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 221 p~~~Q~~ai~~il~--g---~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
++|||...+..+.. + +.+++.+|.|+|||..+.. +...++
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHc
Confidence 36888888887773 2 3588999999999986444 333343
No 338
>KOG0331|consensus
Probab=91.00 E-value=0.22 Score=54.44 Aligned_cols=71 Identities=49% Similarity=0.889 Sum_probs=62.3
Q ss_pred hhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhh
Q psy1604 402 CNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQ 475 (693)
Q Consensus 402 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~ 475 (693)
.++.+.+|+++.+++....+.+..+.|+++|++++++++++..++..+......+ .++.+++++|+|...+
T Consensus 216 vdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~---~rQtlm~saTwp~~v~ 286 (519)
T KOG0331|consen 216 VDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRP---DRQTLMFSATWPKEVR 286 (519)
T ss_pred CcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCC---cccEEEEeeeccHHHH
Confidence 3567899999999999999999999999999999999999999999888776333 3389999999998875
No 339
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.93 E-value=1.3 Score=49.43 Aligned_cols=27 Identities=7% Similarity=0.274 Sum_probs=18.3
Q ss_pred CceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 347 ASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
.+++++||||+|+|.... ...+.+.+.
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LE 144 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLE 144 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHh
Confidence 467899999999886543 333444444
No 340
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.82 E-value=0.34 Score=51.04 Aligned_cols=45 Identities=29% Similarity=0.370 Sum_probs=31.1
Q ss_pred hhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHH
Q psy1604 231 AGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELV 287 (693)
Q Consensus 231 ~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 287 (693)
.+..+.+++++++||||||.. +-.++..+- ...+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~-----------~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIP-----------PQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccC-----------CCCCEEEECCCcccc
Confidence 344678999999999999984 444444331 123678888887774
No 341
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.79 E-value=0.48 Score=53.61 Aligned_cols=27 Identities=7% Similarity=0.273 Sum_probs=18.3
Q ss_pred CceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 347 ASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
.+.+++||||+|+|.... ...+.+++.
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLE 143 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLE 143 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHh
Confidence 457899999999886443 334455554
No 342
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.72 E-value=1.4 Score=46.10 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=19.8
Q ss_pred CC-EEEEccCCCChhHHHHHHHHHHhhcC
Q psy1604 236 RD-LMGCAQTGSGKTAAFLIPIMHHLLES 263 (693)
Q Consensus 236 ~~-vlv~a~TGsGKTl~~ll~il~~l~~~ 263 (693)
.+ +++.+|.|+|||.+ ++.+.+.+...
T Consensus 24 ~halL~~Gp~G~Gktt~-a~~lA~~l~~~ 51 (325)
T COG0470 24 PHALLFYGPPGVGKTTA-ALALAKELLCE 51 (325)
T ss_pred CceeeeeCCCCCCHHHH-HHHHHHHHhCC
Confidence 44 89999999999997 44455555543
No 343
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.70 E-value=1.7 Score=49.29 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=17.4
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
-+|++++.|+|||..+.+ +.+.++
T Consensus 40 A~LFtGP~GvGKTTLAri-LAkaLn 63 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRI-LAKSLN 63 (700)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 469999999999987444 344444
No 344
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.68 E-value=2.3 Score=45.90 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.5
Q ss_pred CCEEEEccCCCChhHHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll 254 (693)
+.+|+.+|.|+|||..+..
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~ 55 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARA 55 (394)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4689999999999986443
No 345
>PRK04328 hypothetical protein; Provisional
Probab=90.67 E-value=0.79 Score=46.19 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=36.1
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.|..+++.+++|+|||.-.+-.+.+.+... .++++++ +.+-..++.+.+..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~g-----------e~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG-----------EPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC-----------CcEEEEE-eeCCHHHHHHHHHHcC
Confidence 567889999999999986555555554332 2467765 4456666777776665
No 346
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.59 E-value=1.1 Score=51.11 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.6
Q ss_pred CCEEEEccCCCChhHHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll 254 (693)
+.+|++++.|+|||..+.+
T Consensus 39 Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4579999999999987444
No 347
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.53 E-value=1.9 Score=45.96 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=18.7
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcC
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLES 263 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~ 263 (693)
-.|+.+|.|+||+..+ ..+.+.++..
T Consensus 43 A~Lf~Gp~G~GK~~lA-~~~A~~Llc~ 68 (365)
T PRK07471 43 AWLIGGPQGIGKATLA-YRMARFLLAT 68 (365)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHhCC
Confidence 5899999999999864 3444555543
No 348
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.52 E-value=0.74 Score=48.39 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=30.5
Q ss_pred hhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVM 288 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~ 288 (693)
+..+.+++++++||||||.. +-.++..+-. ..+++.+=.+.||..
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~-----------~~ri~tiEd~~El~l 201 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPA-----------IERLITVEDAREIVL 201 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCC-----------CCeEEEecCCCcccc
Confidence 34678999999999999984 4455554421 236777766666643
No 349
>KOG2028|consensus
Probab=90.51 E-value=0.9 Score=46.92 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=56.8
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSM 315 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 315 (693)
..+|+.+|.|+|||..+-+ + ....+ ....+.+=+.-|.+-++.+.+.+++--
T Consensus 163 pSmIlWGppG~GKTtlArl--i----a~tsk-----~~SyrfvelSAt~a~t~dvR~ife~aq----------------- 214 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARL--I----ASTSK-----KHSYRFVELSATNAKTNDVRDIFEQAQ----------------- 214 (554)
T ss_pred CceEEecCCCCchHHHHHH--H----HhhcC-----CCceEEEEEeccccchHHHHHHHHHHH-----------------
Confidence 3789999999999984322 1 11111 122355666666666665555544321
Q ss_pred HHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCch
Q psy1604 316 HFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPE 395 (693)
Q Consensus 316 ~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~ 395 (693)
.... ....-.+|.+||+||+... .....+|...+--+++.-||-.+
T Consensus 215 ------------------~~~~-------l~krkTilFiDEiHRFNks---------QQD~fLP~VE~G~I~lIGATTEN 260 (554)
T KOG2028|consen 215 ------------------NEKS-------LTKRKTILFIDEIHRFNKS---------QQDTFLPHVENGDITLIGATTEN 260 (554)
T ss_pred ------------------HHHh-------hhcceeEEEeHHhhhhhhh---------hhhcccceeccCceEEEecccCC
Confidence 0001 1123347889999998422 12223455557778888888544
Q ss_pred hHHh
Q psy1604 396 TIQK 399 (693)
Q Consensus 396 ~~~~ 399 (693)
..+.
T Consensus 261 PSFq 264 (554)
T KOG2028|consen 261 PSFQ 264 (554)
T ss_pred Cccc
Confidence 4333
No 350
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.49 E-value=1.3 Score=46.92 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCChhHHHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll 254 (693)
++.+++++|+|+|||.....
T Consensus 206 ~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56788999999999986433
No 351
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=90.37 E-value=2.7 Score=44.70 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=64.0
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASS 314 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~ 314 (693)
.+.+.+.++.|.|||+. +-++...+... .+.++ ...+...++++.+.++. +....
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~--------~k~R~----HFh~Fm~~vh~~l~~~~-----------~~~~~ 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIK--------RKRRV----HFHEFMLDVHSRLHQLR-----------GQDDP 116 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCcc--------ccccc----cccHHHHHHHHHHHHHh-----------CCCcc
Confidence 47899999999999984 44443332221 11121 34577788888887764 11110
Q ss_pred HHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 315 MHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 315 ~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
. ..+.+.+ .....+|.|||.|-- |.+-.-.+..++..+. ..+.-+|..|.+.|
T Consensus 117 l-----------------~~va~~l------~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~---~~gvvlVaTSN~~P 169 (362)
T PF03969_consen 117 L-----------------PQVADEL------AKESRLLCFDEFQVT-DIADAMILKRLFEALF---KRGVVLVATSNRPP 169 (362)
T ss_pred H-----------------HHHHHHH------HhcCCEEEEeeeecc-chhHHHHHHHHHHHHH---HCCCEEEecCCCCh
Confidence 0 0111111 245668999999943 3332333333333321 12667888999999
Q ss_pred hhHHhh
Q psy1604 395 ETIQKK 400 (693)
Q Consensus 395 ~~~~~~ 400 (693)
.++..-
T Consensus 170 ~~Ly~~ 175 (362)
T PF03969_consen 170 EDLYKN 175 (362)
T ss_pred HHHcCC
Confidence 887653
No 352
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.24 E-value=2.9 Score=42.45 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=63.3
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEE-EEcCCH--HHHHHHHHHHHHHhcCCCeeEEEEeC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVI-ICAPTR--ELVMQIHEVACKYAYSSVLKICLHYG 310 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vL-il~Ptr--~La~Q~~~~~~~~~~~~~l~~~~~~g 310 (693)
.+..+++.+++|+|||..+..-+. .+.... .++. +-+.+. ..+.||....... ++.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~-~l~~~~----------~~v~~i~~D~~ri~~~~ql~~~~~~~----~~~------ 132 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW-QFHGKK----------KTVGFITTDHSRIGTVQQLQDYVKTI----GFE------ 132 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH-HHHHcC----------CeEEEEecCCCCHHHHHHHHHHhhhc----Cce------
Confidence 346789999999999986544332 232211 2333 333232 4555554433321 222
Q ss_pred CCChHHHHHHHhcCCcEEE-echhhHHHHHhcCCcCCCceeEEEEccchhhhh-CCchHHHHHHhccCCCCCCCCcceEE
Q psy1604 311 GASSMHFNRQLEKGCNILV-ATMGRLKDILDRGRISLASVRFVVLDEADRMLD-MGFLGDIQHVMQHSTMPDVANRQTLM 388 (693)
Q Consensus 311 g~~~~~~~~~~~~~~~IlV-~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~-~~~~~~i~~i~~~~~~~~~~~~q~ll 388 (693)
+.. .++..+.+.+..-. ...++++||+|-+=+... ......+..++... .+...++.
T Consensus 133 ----------------~~~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~----~~~~~~LV 191 (270)
T PRK06731 133 ----------------VIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQV----EPDYICLT 191 (270)
T ss_pred ----------------EEecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhh----CCCeEEEE
Confidence 222 24445544443210 124678999999876531 11222333333221 12334667
Q ss_pred eeccCc-hhHHhhhhhh
Q psy1604 389 FSATFP-ETIQKKGCNI 404 (693)
Q Consensus 389 lSAT~~-~~~~~~~~~~ 404 (693)
+|||.. +.....+..|
T Consensus 192 l~a~~~~~d~~~~~~~f 208 (270)
T PRK06731 192 LSASMKSKDMIEIITNF 208 (270)
T ss_pred EcCccCHHHHHHHHHHh
Confidence 899853 4554444444
No 353
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.23 E-value=0.8 Score=48.54 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=27.4
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTREL 286 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 286 (693)
.+..+++++|||||||.. +..++..+... ...+++.+-...++
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~~---------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINKN---------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCcC---------CCCEEEEEcCChhh
Confidence 356789999999999986 44455554322 12356666555454
No 354
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.17 E-value=1.2 Score=51.55 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=30.5
Q ss_pred echhhHHHHHhcCCcCCCceeEEEEccchhhhhC-CchHHHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 330 ATMGRLKDILDRGRISLASVRFVVLDEADRMLDM-GFLGDIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 330 ~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~-~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
.+|..+.+.++. +.+.++|+||=+=+.... .....+..+.. ...+...++.+|||..
T Consensus 249 ~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~----~~~p~e~~LVLsAt~~ 306 (767)
T PRK14723 249 KDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCG----VGRPVRRLLLLNAASH 306 (767)
T ss_pred CCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhc----cCCCCeEEEEECCCCc
Confidence 356666665552 346678888888765322 12222222222 1223456777888863
No 355
>PTZ00146 fibrillarin; Provisional
Probab=90.17 E-value=8.5 Score=39.38 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=13.9
Q ss_pred CEEEEccCCCChhHHHHHHHH
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIM 257 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il 257 (693)
+.++-.-+|+|=|...+..++
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiV 154 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLV 154 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHh
Confidence 467777788887776554433
No 356
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.12 E-value=3.8 Score=41.82 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=14.9
Q ss_pred CCEEEEccCCCChhHHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll 254 (693)
+-+++++++|+|||....-
T Consensus 73 ~vi~l~G~~G~GKTTt~ak 91 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAK 91 (272)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4677889999999986443
No 357
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.10 E-value=1.5 Score=41.81 Aligned_cols=147 Identities=13% Similarity=0.130 Sum_probs=70.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGAS 313 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~ 313 (693)
....+++..++|.|||.+++--++..+ ..+.+|+++.=.+--. -..+...+....++..... +..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~-----------g~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~~--g~~ 85 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV-----------GHGKKVGVVQFIKGAW--STGERNLLEFGGGVEFHVM--GTG 85 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH-----------HCCCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEEC--CCC
Confidence 456899999999999998666555554 3344677774433210 0112222211122222211 111
Q ss_pred hHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCc--hHHHHHHhccCCCCCCCCcceEEeec
Q psy1604 314 SMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGF--LGDIQHVMQHSTMPDVANRQTLMFSA 391 (693)
Q Consensus 314 ~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~--~~~i~~i~~~~~~~~~~~~q~lllSA 391 (693)
.. +.. ...+--.......++.... .+.-..+++|||||+=..++.++ ...+..++...+ ....+|+.--
T Consensus 86 ~~-~~~---~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp----~~~evVlTGR 156 (191)
T PRK05986 86 FT-WET---QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARP----GMQHVVITGR 156 (191)
T ss_pred Cc-ccC---CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC----CCCEEEEECC
Confidence 00 000 0000000011112222111 12335789999999999888776 334444444321 2344555555
Q ss_pred cCchhHHhhhhhh
Q psy1604 392 TFPETIQKKGCNI 404 (693)
Q Consensus 392 T~~~~~~~~~~~~ 404 (693)
..|+++...+...
T Consensus 157 ~~p~~Lie~ADlV 169 (191)
T PRK05986 157 GAPRELIEAADLV 169 (191)
T ss_pred CCCHHHHHhCchh
Confidence 5677766655443
No 358
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=90.10 E-value=0.87 Score=54.48 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=64.0
Q ss_pred CCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC-cccccCCCCCCCEEE
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA-VASRGLDIKGIRHVI 591 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~~~GiDip~v~~VI 591 (693)
.+.+++|.++|+.-|...++.+++ .++.+..+++..+..++.++++.+++|+.+|+|+|. .+...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 357899999999999998887765 356788899999999999999999999999999996 445567888888877
Q ss_pred E
Q psy1604 592 N 592 (693)
Q Consensus 592 ~ 592 (693)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 359
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.87 E-value=0.46 Score=51.62 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=30.5
Q ss_pred CHHHHhhhhhhhcCC--CEEEEccCCCChhHHHHHHHHHHhhcC
Q psy1604 222 TPIQKYAIPAGLEGR--DLMGCAQTGSGKTAAFLIPIMHHLLES 263 (693)
Q Consensus 222 ~~~Q~~ai~~il~g~--~vlv~a~TGsGKTl~~ll~il~~l~~~ 263 (693)
.+.|...+..+++.. =+++.+|||||||.. +..++..+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 566777776766543 477889999999997 77788777554
No 360
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=89.85 E-value=1.9 Score=47.91 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=15.9
Q ss_pred CCEEEEccCCCChhHHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll 254 (693)
+.+|+++|.|+|||..+.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999987544
No 361
>KOG0330|consensus
Probab=89.81 E-value=0.22 Score=51.64 Aligned_cols=215 Identities=22% Similarity=0.287 Sum_probs=124.2
Q ss_pred hhhhHHHHh-hccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeeccc
Q psy1604 409 MGRLKDILD-RGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIG 487 (693)
Q Consensus 409 ~~~l~~~l~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~ 487 (693)
|+++.+++. ...++...++++++|++++++++.|......+.+... ..++.+++++|+++...+-.. ...
T Consensus 187 PGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip----~erqt~LfsATMt~kv~kL~r-asl---- 257 (476)
T KOG0330|consen 187 PGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP----RERQTFLFSATMTKKVRKLQR-ASL---- 257 (476)
T ss_pred cHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC----ccceEEEEEeecchhhHHHHh-hcc----
Confidence 667777776 5677888999999999999999999988888877665 778999999999988753221 100
Q ss_pred ccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhC-CCceEEecCCCCHHHHHHHHHHHhc
Q psy1604 488 GASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCET-EIATTSIHGSRLQSQREQAIHDFKT 566 (693)
Q Consensus 488 ~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~-~~~v~~lhg~~~~~~R~~~~~~F~~ 566 (693)
.+. .. +....|.... ..+ .+..+|++.+..--+|...|++. +-.+.++....+..++..++=+ ..
T Consensus 258 ---~~p-~~---v~~s~ky~tv-~~l-----kQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~-~l 323 (476)
T KOG0330|consen 258 ---DNP-VK---VAVSSKYQTV-DHL-----KQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLR-NL 323 (476)
T ss_pred ---CCC-eE---Eeccchhcch-HHh-----hhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHH-hc
Confidence 000 11 1111121111 111 12467777766666677777654 4445555544445555443321 11
Q ss_pred CCCcEEEEeCccc-------ccCCCCCCCEEEEcC-------CCC--------ChhhhhhhhcccccCCCcceEEEEeCC
Q psy1604 567 KKMKVLVATAVAS-------RGLDIKGIRHVINYD-------LPQ--------EIDEYVHRIGRTGRVGNKGRATSFYDP 624 (693)
Q Consensus 567 g~~~ILVaT~v~~-------~GiDip~v~~VI~~d-------~p~--------s~~~y~Qr~GRagR~G~~G~~~~~~~~ 624 (693)
|-..+=+--++.. .-.--...+.++..| .|. =|..-.--|=|+||.++.|..-.-++
T Consensus 324 g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~It- 402 (476)
T KOG0330|consen 324 GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAIT- 402 (476)
T ss_pred CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEE-
Confidence 1111111111000 000112345555433 332 24445567889999999997777775
Q ss_pred CCchHHHHHHHHHHHHcCCCchh
Q psy1604 625 DQDGAIAKDLVRILEQAGQPVPE 647 (693)
Q Consensus 625 ~~d~~~~~~l~~~l~~~~~~vp~ 647 (693)
=-...-+..+.++-......+|+
T Consensus 403 lVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 403 LVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred EEehhhhHHHHHHHHHHhcCCCc
Confidence 45555555666666667788876
No 362
>KOG0336|consensus
Probab=89.68 E-value=0.31 Score=50.71 Aligned_cols=69 Identities=49% Similarity=0.760 Sum_probs=61.3
Q ss_pred hhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhh
Q psy1604 403 NILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQ 475 (693)
Q Consensus 403 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~ 475 (693)
.+++.+|+++.++....-+.+..+.|+++|++++++++++...+..++... .++++.++.++|+|+..+
T Consensus 345 eiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldi----RPDRqtvmTSATWP~~Vr 413 (629)
T KOG0336|consen 345 EIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDI----RPDRQTVMTSATWPEGVR 413 (629)
T ss_pred eEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhc----CCcceeeeecccCchHHH
Confidence 456889999999999999999999999999999999999999888877554 478999999999998864
No 363
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.67 E-value=0.93 Score=48.50 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=17.1
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
.+++.+|.|+|||..+.. +.+.+.
T Consensus 40 ~~L~~Gp~G~GKTtla~~-la~~l~ 63 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL-LAKSLN 63 (363)
T ss_pred EEEEecCCCCCHHHHHHH-HHHHhc
Confidence 468999999999986433 444443
No 364
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=89.60 E-value=2.5 Score=41.81 Aligned_cols=52 Identities=23% Similarity=0.190 Sum_probs=32.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
.|..+++.+++|+|||..++..+.+.+ ..+ .+++++.- .+...++.+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g----------~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-RDG----------DPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-hcC----------CeEEEEEc-cCCHHHHHHHHHHh
Confidence 567899999999999986444444433 222 24666654 34455655555544
No 365
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=89.56 E-value=1.1 Score=52.14 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=14.7
Q ss_pred CCEEEEccCCCChhHHH
Q psy1604 236 RDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ 252 (693)
.++++.+|+|+|||..+
T Consensus 53 ~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 53 GSLILYGPPGVGKTTLA 69 (725)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47899999999999853
No 366
>PRK05973 replicative DNA helicase; Provisional
Probab=89.48 E-value=0.96 Score=44.94 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHhCCCCC----------CCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCC
Q psy1604 203 AGLREILVKNLKKSNYTK----------PTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYC 272 (693)
Q Consensus 203 ~~l~~~l~~~l~~~g~~~----------p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~ 272 (693)
..|++.+-+.-.+-||.. ++|.. +..--+..|.-++|.|++|+|||...+-.+.+.+. ++
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~G-------- 92 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-SG-------- 92 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cC--------
Confidence 345666666666667763 45522 23334456778999999999999875555555442 22
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 273 AQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 273 ~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.+++|++- -+-..|+.+.+..+.
T Consensus 93 --e~vlyfSl-Ees~~~i~~R~~s~g 115 (237)
T PRK05973 93 --RTGVFFTL-EYTEQDVRDRLRALG 115 (237)
T ss_pred --CeEEEEEE-eCCHHHHHHHHHHcC
Confidence 25677754 344567777777653
No 367
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.47 E-value=0.7 Score=52.30 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=16.1
Q ss_pred CCEEEEccCCCChhHHHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIP 255 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~ 255 (693)
..+|+.+|.|+|||.++.+.
T Consensus 39 ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46789999999999975543
No 368
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=89.45 E-value=0.79 Score=47.11 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAFL 253 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~l 253 (693)
++.+++++|||+|||....
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568899999999998643
No 369
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.39 E-value=2.8 Score=44.78 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=20.9
Q ss_pred hhcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
+-.|+.+++.+|+|+|||.. +..+.+.+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL-~~~i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL-LQKIAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHH-HHHHHHhh
Confidence 34789999999999999985 33344444
No 370
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.37 E-value=1.2 Score=48.51 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=30.9
Q ss_pred chhhHHHHHhcCCcCCCceeEEEEccchhhhh-CCchHHHHHHhccCCCCCCCCcceEEeeccCc
Q psy1604 331 TMGRLKDILDRGRISLASVRFVVLDEADRMLD-MGFLGDIQHVMQHSTMPDVANRQTLMFSATFP 394 (693)
Q Consensus 331 Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~-~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~ 394 (693)
++..+...+.. +.++++||||.+-+... ......+..++... ..+....+.+|||..
T Consensus 286 ~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~---~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 286 DPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFS---GEPIDVYLVLSATTK 343 (424)
T ss_pred CHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhcc---CCCCeEEEEEECCCC
Confidence 44455555542 34679999999865321 11223444444421 112455777898864
No 371
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.31 E-value=2.2 Score=47.24 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ 252 (693)
.++.+++.++||+|||...
T Consensus 349 ~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678889999999999864
No 372
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=89.23 E-value=1.2 Score=50.66 Aligned_cols=37 Identities=30% Similarity=0.344 Sum_probs=24.4
Q ss_pred HHHHhhhhhhhc--CCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 223 PIQKYAIPAGLE--GRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 223 ~~Q~~ai~~il~--g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
+.|.+.+..++. +..+++++|||||||.. +..++..+
T Consensus 302 ~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 302 PDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 334444444433 34678999999999987 45666665
No 373
>PRK13342 recombination factor protein RarA; Reviewed
Probab=89.10 E-value=1.2 Score=48.59 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.6
Q ss_pred CCEEEEccCCCChhHHH
Q psy1604 236 RDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ 252 (693)
.++++.+|+|+|||..+
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 37899999999999863
No 374
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.04 E-value=2.1 Score=48.13 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=68.7
Q ss_pred HHHHHHHhc-cCCCcEEEEecCh----HhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-ccc
Q psy1604 507 KKLLELLRE-KDEDGVIVFVSTI----RNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-ASR 580 (693)
Q Consensus 507 ~~L~~~l~~-~~~~kvLVF~~s~----~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-~~~ 580 (693)
..++..+.. ..+.++..-++|- ++.+.+.++|...++.+..+.|.+....|+++++...+|.++|+|.|-. +..
T Consensus 299 VA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd 378 (677)
T COG1200 299 VALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD 378 (677)
T ss_pred HHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc
Confidence 334444433 5667889999994 4555566677778999999999999999999999999999999999965 466
Q ss_pred cCCCCCCCEEEE
Q psy1604 581 GLDIKGIRHVIN 592 (693)
Q Consensus 581 GiDip~v~~VI~ 592 (693)
.+++.++.+||.
T Consensus 379 ~V~F~~LgLVIi 390 (677)
T COG1200 379 KVEFHNLGLVII 390 (677)
T ss_pred ceeecceeEEEE
Confidence 888888888774
No 375
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.88 E-value=3.3 Score=47.13 Aligned_cols=28 Identities=7% Similarity=0.261 Sum_probs=19.0
Q ss_pred CCceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 346 LASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
..+.+++||||+|+|.... ...+.+++.
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LE 144 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLE 144 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHH
Confidence 3578999999999886433 344455554
No 376
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=88.88 E-value=2.2 Score=42.49 Aligned_cols=53 Identities=9% Similarity=-0.030 Sum_probs=34.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.+.-+++.+++|+|||.-....+...+. + +.+++++.-- +-..++.+.+..+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~----------g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK-Q----------GKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh-C----------CCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 4567899999999999865554444442 2 2256666553 44456666666654
No 377
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=88.78 E-value=3.2 Score=47.27 Aligned_cols=48 Identities=27% Similarity=0.284 Sum_probs=29.5
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcC---CCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEG---RDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g---~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
.+|+++--.+.+.+.|.. .+.++ +.+|+.+|.|+|||..+.+. ...+.
T Consensus 21 ~~f~dliGq~~~v~~L~~---------------~~~~gri~ha~L~~Gp~GvGKTt~Ar~l-Ak~L~ 71 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTN---------------AFETGRIAQAFMLTGVRGVGKTTTARIL-ARALN 71 (598)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHHH-HHhhC
Confidence 456666556666665543 11222 46899999999999875443 33343
No 378
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=88.75 E-value=0.85 Score=45.57 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=37.9
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.|..+++.+++|+|||..++-.+.+.+.. +.++++++ +.+-..|+.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-----------ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-----------GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 46789999999999998766656655522 22578777 4567777777777665
No 379
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=88.59 E-value=0.74 Score=43.60 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=56.8
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSM 315 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 315 (693)
+=.++.+|+.||||.. +|-.+.+.... +.++++..|...- ++. .-.+....|-.
T Consensus 5 ~l~~i~gpM~SGKT~e-Ll~r~~~~~~~----------g~~v~vfkp~iD~---------R~~---~~~V~Sr~G~~--- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEE-LLRRARRYKEA----------GMKVLVFKPAIDT---------RYG---VGKVSSRIGLS--- 58 (201)
T ss_pred EEEEEEccCcCcchHH-HHHHHHHHHHc----------CCeEEEEeccccc---------ccc---cceeeeccCCc---
Confidence 3468899999999997 44444444332 3468888885211 110 01122222211
Q ss_pred HHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 316 HFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 316 ~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
..-++|-.+..+.+.+....... ++++|.||||+-+.+ ..-..+..+..
T Consensus 59 --------~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~~-~~v~~l~~lad 107 (201)
T COG1435 59 --------SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFDE-ELVYVLNELAD 107 (201)
T ss_pred --------ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCCH-HHHHHHHHHHh
Confidence 13466667777777776543222 278999999996643 22333344443
No 380
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.41 E-value=3.9 Score=40.52 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=19.2
Q ss_pred hcCC-CEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGR-DLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~-~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..++ -+.++++.|||||...= +++..+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~R-al~~s~ 75 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRR-ALLASL 75 (269)
T ss_pred hcCCceEEEEecCCCchhHHHH-HHHHhc
Confidence 3455 67899999999999744 444443
No 381
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=88.37 E-value=0.48 Score=45.71 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=13.1
Q ss_pred EEEEccCCCChhHHHHHH
Q psy1604 238 LMGCAQTGSGKTAAFLIP 255 (693)
Q Consensus 238 vlv~a~TGsGKTl~~ll~ 255 (693)
.++++.+|||||+-++.-
T Consensus 3 ~~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEEE--TTSSHHHHHHHH
T ss_pred EEEEcCCCCcHhHHHHHH
Confidence 478999999999876665
No 382
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=88.29 E-value=1.5 Score=49.64 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=15.9
Q ss_pred CCEEEEccCCCChhHHHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIP 255 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~ 255 (693)
+-+|+++|.|+|||.++-+.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45788999999999875443
No 383
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=88.21 E-value=0.69 Score=47.66 Aligned_cols=46 Identities=24% Similarity=0.144 Sum_probs=37.5
Q ss_pred CCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcC
Q psy1604 218 YTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLES 263 (693)
Q Consensus 218 ~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~ 263 (693)
+.-.++-|..=+.++.++.-++..+|-|+|||+.+.....+.+...
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~ 171 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAG 171 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhc
Confidence 4457889999999998888888999999999987777677666544
No 384
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.20 E-value=2.5 Score=47.13 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=17.4
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
-+++.+|.|+|||..+. .+...+.
T Consensus 38 a~Lf~GppGtGKTTlA~-~lA~~l~ 61 (504)
T PRK14963 38 AYLFSGPRGVGKTTTAR-LIAMAVN 61 (504)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHh
Confidence 35999999999998744 3444444
No 385
>PRK13764 ATPase; Provisional
Probab=87.99 E-value=1.2 Score=50.37 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=31.2
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 197 IESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
..+++++++++.+++.+. ..+++++++++||||||.. +..++..+.
T Consensus 237 ~~~Le~l~l~~~l~~~l~------------------~~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 237 KLSLEDYNLSEKLKERLE------------------ERAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred CCCHHHhCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 345677777765544332 2457899999999999985 455665553
No 386
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=87.66 E-value=9.5 Score=35.82 Aligned_cols=143 Identities=15% Similarity=0.098 Sum_probs=61.2
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHH
Q psy1604 238 LMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHF 317 (693)
Q Consensus 238 vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~ 317 (693)
+.+--..|=|||.+++=-++..+ ..+.+|+|+.=.+. .....+...+....++.....--+......
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~-----------G~G~rV~ivQFlKg--~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~ 72 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA-----------GHGMRVLIVQFLKG--GRYSGELKALKKLPNVEIERFGKGFVWRMN 72 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH-----------CTT--EEEEESS----SS--HHHHHHGGGT--EEEE--TT----GG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH-----------hCCCEEEEEEEecC--CCCcCHHHHHHhCCeEEEEEcCCcccccCC
Confidence 44556688899998766666555 45568888866554 111233333322222333221111110000
Q ss_pred HHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCc--hHHHHHHhccCCCCCCCCcceEEeeccCch
Q psy1604 318 NRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGF--LGDIQHVMQHSTMPDVANRQTLMFSATFPE 395 (693)
Q Consensus 318 ~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~--~~~i~~i~~~~~~~~~~~~q~lllSAT~~~ 395 (693)
... .+ .......++... ..+.-..+++||+||+-...+.++ ...+..++...+ ....+|+.--.+|+
T Consensus 73 ~~~----~~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp----~~~evVlTGR~~~~ 141 (172)
T PF02572_consen 73 EEE----ED--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRP----ESLEVVLTGRNAPE 141 (172)
T ss_dssp GHH----HH--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-----TT-EEEEE-SS--H
T ss_pred CcH----HH--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCC----CCeEEEEECCCCCH
Confidence 000 00 001111222211 123346799999999999888876 334445554321 24455655556677
Q ss_pred hHHhhhhhh
Q psy1604 396 TIQKKGCNI 404 (693)
Q Consensus 396 ~~~~~~~~~ 404 (693)
++...+..+
T Consensus 142 ~l~e~ADlV 150 (172)
T PF02572_consen 142 ELIEAADLV 150 (172)
T ss_dssp HHHHH-SEE
T ss_pred HHHHhCCee
Confidence 766655443
No 387
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=87.65 E-value=0.43 Score=53.54 Aligned_cols=223 Identities=27% Similarity=0.377 Sum_probs=135.1
Q ss_pred hhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEE
Q psy1604 402 CNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFI 481 (693)
Q Consensus 402 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~ 481 (693)
.++++.+|+++.+++....+....++++++|+.++++++++..++..+...... +++.++||+|+++.+..-....
T Consensus 151 ~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~----~~qtllfSAT~~~~i~~l~~~~ 226 (513)
T COG0513 151 VDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP----DRQTLLFSATMPDDIRELARRY 226 (513)
T ss_pred CCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc----ccEEEEEecCCCHHHHHHHHHH
Confidence 457788999999999999999999999999999999999999999888876554 8999999999998653211100
Q ss_pred EeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChH-hHHHHHHHHhhCCCc-eEEecCCCCHHHHHH
Q psy1604 482 AVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIR-NADFIACYLCETEIA-TTSIHGSRLQSQREQ 559 (693)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~-~a~~l~~~L~~~~~~-v~~lhg~~~~~~R~~ 559 (693)
.. ++ . ...+...... .....-...++++...+ ..+.|...|...... +.++....... +.
T Consensus 227 l~------~p--~--~i~v~~~~~~------~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~--~~ 288 (513)
T COG0513 227 LN------DP--V--EIEVSVEKLE------RTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLV--EE 288 (513)
T ss_pred cc------CC--c--EEEEcccccc------ccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHH--HH
Confidence 00 00 0 1111100000 00122345688888876 777788887765544 44444432222 22
Q ss_pred HHHHHhcCCCcEEEEeCccc--------ccCCCCCCCEEEEcC-------CC--------CChhhhhhhhcccccCCCcc
Q psy1604 560 AIHDFKTKKMKVLVATAVAS--------RGLDIKGIRHVINYD-------LP--------QEIDEYVHRIGRTGRVGNKG 616 (693)
Q Consensus 560 ~~~~F~~g~~~ILVaT~v~~--------~GiDip~v~~VI~~d-------~p--------~s~~~y~Qr~GRagR~G~~G 616 (693)
+...++.-.+++..-..-+. ..+--..++++|--| .| .-+.+....+=|.||.|+.|
T Consensus 289 l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG 368 (513)
T COG0513 289 LAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG 368 (513)
T ss_pred HHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCC
Confidence 33334333233332221110 001112355566444 33 13556667788999999999
Q ss_pred eEEEEeCCCCchHHHHHHHHHHHHcCCCch
Q psy1604 617 RATSFYDPDQDGAIAKDLVRILEQAGQPVP 646 (693)
Q Consensus 617 ~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp 646 (693)
..=.-++--....-...+.++.+.....++
T Consensus 369 ~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 369 RKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 766666644443466677777776666655
No 388
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=87.48 E-value=1.1 Score=44.47 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=36.5
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhc-CCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLE-SPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~-~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.|..+++.+++|+|||.-.+-.+.+.+.+ .. ++++++- .+-..++.+.+..+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge-----------~vlyvs~-ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE-----------KVLYVSF-EEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-------------EEEEES-SS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC-----------cEEEEEe-cCCHHHHHHHHHHcC
Confidence 45789999999999998766666666654 32 5777764 455677777777654
No 389
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.44 E-value=4.7 Score=46.02 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=17.1
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
-+|++++.|+|||..+.+ +...++
T Consensus 40 a~Lf~Gp~GvGKTtlAr~-lAk~Ln 63 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRI-LAKSLN 63 (618)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhc
Confidence 469999999999987544 333443
No 390
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.31 E-value=1.5 Score=49.61 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=18.8
Q ss_pred CCceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 346 LASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
..+.+++||||+|+|.... ...+.+.+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LE 143 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVE 143 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHh
Confidence 3568899999999986543 333444444
No 391
>PRK10689 transcription-repair coupling factor; Provisional
Probab=87.27 E-value=1.8 Score=53.24 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=62.7
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC-cccccCCCCCCCEEE
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCET----EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA-VASRGLDIKGIRHVI 591 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~~~GiDip~v~~VI 591 (693)
.+.+++|.++++..|..+++.+++. ++.+..+++..+..++.++++..++|..+|+|+|. .+...+++.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999988877652 46778899999999999999999999999999996 444456777888776
Q ss_pred E
Q psy1604 592 N 592 (693)
Q Consensus 592 ~ 592 (693)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 3
No 392
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.27 E-value=0.57 Score=47.59 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=19.8
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
...|+++.+|||||||+. .-.|.+++.
T Consensus 96 ~KSNILLiGPTGsGKTlL--AqTLAk~Ln 122 (408)
T COG1219 96 SKSNILLIGPTGSGKTLL--AQTLAKILN 122 (408)
T ss_pred eeccEEEECCCCCcHHHH--HHHHHHHhC
Confidence 456899999999999984 334444444
No 393
>PTZ00293 thymidine kinase; Provisional
Probab=87.16 E-value=0.81 Score=44.37 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=25.8
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCC
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPT 283 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Pt 283 (693)
|+-.++.+|++||||.. ||-.+++.... +.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~~a----------g~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFTYS----------EKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHHHc----------CCceEEEEec
Confidence 44568899999999986 44444444333 2357888885
No 394
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.07 E-value=1.3 Score=42.42 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=24.5
Q ss_pred CCCHHHHhhhhhhh-cCCCEEEEccCCCChhHH
Q psy1604 220 KPTPIQKYAIPAGL-EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 220 ~p~~~Q~~ai~~il-~g~~vlv~a~TGsGKTl~ 251 (693)
.+++-|.+.+.... .+..++++++||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34566666666555 578999999999999985
No 395
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=87.07 E-value=0.41 Score=47.59 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=14.4
Q ss_pred EEEEccCCCChhHHHHHHHH
Q psy1604 238 LMGCAQTGSGKTAAFLIPIM 257 (693)
Q Consensus 238 vlv~a~TGsGKTl~~ll~il 257 (693)
+++.|+.|||||.. +..++
T Consensus 1 ~vv~G~pGsGKSt~-i~~~~ 19 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL-IKKLL 19 (234)
T ss_pred CEEEcCCCCCHHHH-HHHHH
Confidence 47899999999995 44444
No 396
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=86.97 E-value=4.1 Score=38.27 Aligned_cols=55 Identities=15% Similarity=0.327 Sum_probs=35.2
Q ss_pred CCceeEEEEccchhhhhCCc--hHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 346 LASVRFVVLDEADRMLDMGF--LGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~~~--~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
-.++++||+||+-..++.++ ...+..++...+ +...+|+..-..|+++...+...
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp----~~~evVlTGR~~p~~l~e~AD~V 151 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERP----GHQHVIITGRGCPQDLLELADLV 151 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC----CCCEEEEECCCCCHHHHHhCcee
Confidence 35789999999998887775 334444444321 24456666666777776665544
No 397
>PTZ00110 helicase; Provisional
Probab=86.92 E-value=9.6 Score=43.21 Aligned_cols=199 Identities=24% Similarity=0.314 Sum_probs=109.4
Q ss_pred hhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEE
Q psy1604 403 NILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIA 482 (693)
Q Consensus 403 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~ 482 (693)
.+++.+|.++..++......+..+.++++||.|.++++++...+..+.... ...++.+++++|++..+..-.....
T Consensus 255 ~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~----~~~~q~l~~SAT~p~~v~~l~~~l~ 330 (545)
T PTZ00110 255 EILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI----RPDRQTLMWSATWPKEVQSLARDLC 330 (545)
T ss_pred CEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhC----CCCCeEEEEEeCCCHHHHHHHHHHh
Confidence 345667788888887777778889999999999999998877766665443 2467889999999876532110000
Q ss_pred eecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhh---CCCceEEecCCCCHHHHHH
Q psy1604 483 VGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCE---TEIATTSIHGSRLQSQREQ 559 (693)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~---~~~~v~~lhg~~~~~~R~~ 559 (693)
. ...+. ..+.... +.....-...++++........|...|.. .+.++.++-.. ...-+.
T Consensus 331 ~------~~~v~---i~vg~~~-------l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t--~~~a~~ 392 (545)
T PTZ00110 331 K------EEPVH---VNVGSLD-------LTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVET--KKGADF 392 (545)
T ss_pred c------cCCEE---EEECCCc-------cccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecC--hHHHHH
Confidence 0 00000 0000000 00001112334555555545555555544 23445544433 333344
Q ss_pred HHHHHhcCCCcEEEEeCccc--------ccCCCCCCCEEEE-------cCCC--------CChhhhhhhhcccccCCCcc
Q psy1604 560 AIHDFKTKKMKVLVATAVAS--------RGLDIKGIRHVIN-------YDLP--------QEIDEYVHRIGRTGRVGNKG 616 (693)
Q Consensus 560 ~~~~F~~g~~~ILVaT~v~~--------~GiDip~v~~VI~-------~d~p--------~s~~~y~Qr~GRagR~G~~G 616 (693)
+.+.++.....++.-+.-.. ..+--..+.++|- +|+| .-+.+...-+-|+||.|+.|
T Consensus 393 l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 393 LTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred HHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC
Confidence 55555544445443332111 0000123445554 3344 24566778899999999999
Q ss_pred eEEEEeC
Q psy1604 617 RATSFYD 623 (693)
Q Consensus 617 ~~~~~~~ 623 (693)
..-.-++
T Consensus 473 ~~G~ai~ 479 (545)
T PTZ00110 473 AKGASYT 479 (545)
T ss_pred CCceEEE
Confidence 8766665
No 398
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.81 E-value=1.5 Score=48.53 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=14.7
Q ss_pred CEEEEccCCCChhHHHHH
Q psy1604 237 DLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll 254 (693)
.+++.+|+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999986443
No 399
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.78 E-value=2.1 Score=46.29 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCChhHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFL 253 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~l 253 (693)
.+..+.+.++||+|||....
T Consensus 190 ~g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678899999999998643
No 400
>KOG0744|consensus
Probab=86.71 E-value=4.3 Score=41.54 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=55.5
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHH-----------HHHHHHHHHHHhcCCC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTREL-----------VMQIHEVACKYAYSSV 302 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~L-----------a~Q~~~~~~~~~~~~~ 302 (693)
-++-+++.+|+|+|||.- .-++.++|.-.-... ..+ -.||=.....| +.++++.+..+....+
T Consensus 176 ~NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~----y~~-~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~ 249 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSL-CKALAQKLSIRTNDR----YYK-GQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRG 249 (423)
T ss_pred eeeEEEEeCCCCCChhHH-HHHHHHhheeeecCc----ccc-ceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCC
Confidence 356688999999999974 455555553321110 111 23444444444 4455555556655555
Q ss_pred eeEEEEeCC---------------CCh---------HHHHHHHhcCCcEEEechhhHHHHHh
Q psy1604 303 LKICLHYGG---------------ASS---------MHFNRQLEKGCNILVATMGRLKDILD 340 (693)
Q Consensus 303 l~~~~~~gg---------------~~~---------~~~~~~~~~~~~IlV~Tp~~L~~~l~ 340 (693)
.-+.+++.. .+. -.|.+++++.++|+|-|...|.+-++
T Consensus 250 ~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD 311 (423)
T KOG0744|consen 250 NLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSID 311 (423)
T ss_pred cEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHH
Confidence 555554432 111 13455566677888777766655443
No 401
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=86.70 E-value=2.9 Score=46.79 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
.+.+++.+|+|+|||+.
T Consensus 88 ~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCcEEEECCCCCCHHHH
Confidence 35799999999999985
No 402
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=86.69 E-value=4.1 Score=43.36 Aligned_cols=114 Identities=21% Similarity=0.207 Sum_probs=51.1
Q ss_pred EEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHH---HHHHHHhcCCCeeEEEE-eCCCCh
Q psy1604 239 MGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIH---EVACKYAYSSVLKICLH-YGGASS 314 (693)
Q Consensus 239 lv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~---~~~~~~~~~~~l~~~~~-~gg~~~ 314 (693)
++.++.|+|||....+.++..++..+. ...++++..+..+...+. ..+..+... .+..... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~--------~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP--------GRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKI 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS----------EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC--------CcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcE
Confidence 467899999999888877777766543 124566644444444322 223333222 1111111 000000
Q ss_pred HHHHHHHhcCCcEEEechhhH--HHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHH
Q psy1604 315 MHFNRQLEKGCNILVATMGRL--KDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQH 371 (693)
Q Consensus 315 ~~~~~~~~~~~~IlV~Tp~~L--~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~ 371 (693)
.+.++..|.+.+...- ..-+. =..++++++||+-.+.+..+...+..
T Consensus 72 -----~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~ 120 (384)
T PF03237_consen 72 -----ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRR 120 (384)
T ss_dssp -----EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHH
T ss_pred -----EecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHh
Confidence 0134555555553321 11111 15678999999887755444433333
No 403
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=86.68 E-value=6.1 Score=37.07 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.9
Q ss_pred EEEEccCCCChhHHH
Q psy1604 238 LMGCAQTGSGKTAAF 252 (693)
Q Consensus 238 vlv~a~TGsGKTl~~ 252 (693)
+++.+++|+|||...
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 578899999999874
No 404
>PF05729 NACHT: NACHT domain
Probab=86.66 E-value=4.1 Score=37.51 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=19.1
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcCC
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLESP 264 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~~ 264 (693)
-++|.|+.|+|||.. +.-+...+....
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHhcC
Confidence 478999999999986 444555554443
No 405
>KOG0298|consensus
Probab=86.65 E-value=0.93 Score=53.98 Aligned_cols=100 Identities=21% Similarity=0.198 Sum_probs=76.8
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCC
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDL 595 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~ 595 (693)
+.-.++|+|+.-....+.+...+...++.....-+ .++-...+..|++ --.+|+-+...+-|+|+-+..||+..++
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheecc
Confidence 45578999998888888887777665544332222 4555667777876 3335677888999999999999999999
Q ss_pred CCChhhhhhhhcccccCCCcceEE
Q psy1604 596 PQEIDEYVHRIGRTGRVGNKGRAT 619 (693)
Q Consensus 596 p~s~~~y~Qr~GRagR~G~~G~~~ 619 (693)
-.++..-.|.+||..|.||+--.+
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT~ 1318 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPTF 1318 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccchh
Confidence 999999999999999999875443
No 406
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=86.53 E-value=3.7 Score=39.91 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=19.4
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHH 259 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~ 259 (693)
.|+-+.+.+++|+|||...+..+.+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999998755444443
No 407
>KOG0741|consensus
Probab=86.17 E-value=5 Score=43.83 Aligned_cols=68 Identities=19% Similarity=0.104 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHhCCCCCCCHHHHhhhhh----h---hc-----CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccC
Q psy1604 203 AGLREILVKNLKKSNYTKPTPIQKYAIPA----G---LE-----GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTG 270 (693)
Q Consensus 203 ~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~----i---l~-----g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~ 270 (693)
++.+++-++.....|.-.-.+.-.+.+.. + .. -..+++.+|.|||||..+.-.++.
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~------------ 561 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS------------ 561 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh------------
Confidence 35566666666655554433333333221 1 11 136899999999999743332221
Q ss_pred CCCCCeEEEEcCC
Q psy1604 271 YCAQPEVIICAPT 283 (693)
Q Consensus 271 ~~~~~~vLil~Pt 283 (693)
...|.+=|++|.
T Consensus 562 -S~FPFvKiiSpe 573 (744)
T KOG0741|consen 562 -SDFPFVKIISPE 573 (744)
T ss_pred -cCCCeEEEeChH
Confidence 345677788884
No 408
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.17 E-value=2.8 Score=49.42 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=18.3
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..++++.+|+|+|||..+ -.+.+.+
T Consensus 203 ~~n~lL~G~pG~GKT~l~-~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA-EGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 358999999999999863 3333444
No 409
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=86.16 E-value=1.9 Score=45.53 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=38.9
Q ss_pred HHHHhCCCCCCCHHHHhhhhhhh-cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHH
Q psy1604 211 KNLKKSNYTKPTPIQKYAIPAGL-EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELV 287 (693)
Q Consensus 211 ~~l~~~g~~~p~~~Q~~ai~~il-~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 287 (693)
..+.+.|+ +++.+.+.+..+. .+.+++++++||||||.. +-.++..+ . ...+++++-.+.||.
T Consensus 155 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i-~----------~~~riv~iEd~~El~ 218 (340)
T TIGR03819 155 DELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV-A----------PDERIVLVEDAAELR 218 (340)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC-C----------CCCcEEEECCcceec
Confidence 33344444 3456666666555 457999999999999984 33333332 1 123577777777773
No 410
>KOG0341|consensus
Probab=86.11 E-value=0.27 Score=50.77 Aligned_cols=69 Identities=52% Similarity=0.822 Sum_probs=60.4
Q ss_pred hhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhh
Q psy1604 403 NILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQ 475 (693)
Q Consensus 403 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~ 475 (693)
.+.+.+|+++.+++....+++...+|+.+|+.+++.+++|..++..++.... ..++.++||+|+|..++
T Consensus 304 HivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK----~QRQTLLFSATMP~KIQ 372 (610)
T KOG0341|consen 304 HIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK----GQRQTLLFSATMPKKIQ 372 (610)
T ss_pred eEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh----hhhheeeeeccccHHHH
Confidence 3457778999999999999999999999999999999999999988875543 56899999999999875
No 411
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=86.07 E-value=3.1 Score=43.49 Aligned_cols=49 Identities=16% Similarity=0.383 Sum_probs=27.4
Q ss_pred CceeEEEEccchhhhh-CCchHHHHHHhccC--CCCCCCCcceEEeeccCch
Q psy1604 347 ASVRFVVLDEADRMLD-MGFLGDIQHVMQHS--TMPDVANRQTLMFSATFPE 395 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~-~~~~~~i~~i~~~~--~~~~~~~~q~lllSAT~~~ 395 (693)
.++++||+|=+-++.. ......+..+.... ..+..+...++.++||...
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 4678888888877642 22234444443321 2233345567888888543
No 412
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=86.00 E-value=3.6 Score=43.83 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=26.4
Q ss_pred CHHHHhhhhhhh---cCCCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 222 TPIQKYAIPAGL---EGRDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 222 ~~~Q~~ai~~il---~g~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
.+.=.++|..+. .|+..++.+|.|+|||.. +..+.+.+..
T Consensus 153 ~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~ 195 (416)
T PRK09376 153 EDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSITT 195 (416)
T ss_pred cccceeeeeeecccccCceEEEeCCCCCChhHH-HHHHHHHHHh
Confidence 334444444443 789999999999999974 3445555544
No 413
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.90 E-value=0.98 Score=46.10 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=30.2
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELV 287 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 287 (693)
..+.+++++++||||||.. +..++..+-.. ..+++++-.+.|+.
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~----------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE----------DERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT----------TSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc----------ccceEEecccccee
Confidence 4578999999999999986 45556555332 13678887776664
No 414
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=85.89 E-value=3.1 Score=44.94 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=28.5
Q ss_pred CccccCCCCHHHHHHHHhC---CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 198 ESFESAGLREILVKNLKKS---NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
.+|++++-.+...+.+... .+.++..++...+ ..-+.+++.+|+|+|||+.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~---~~p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGI---EPPKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCC---CCCCceEEECCCCCChHHH
Confidence 3456665444444444432 2333333332222 1235799999999999986
No 415
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.78 E-value=2.9 Score=49.37 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
.+.+++.+|+|+|||+.
T Consensus 487 ~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLL 503 (733)
T ss_pred CceEEEECCCCCCHHHH
Confidence 35799999999999985
No 416
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.69 E-value=3.2 Score=48.70 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCChhHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ 252 (693)
..++++.+|+|+|||..+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 468999999999999863
No 417
>PHA00729 NTP-binding motif containing protein
Probab=85.62 E-value=2.2 Score=41.91 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.9
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
++++.+++|+|||..
T Consensus 19 nIlItG~pGvGKT~L 33 (226)
T PHA00729 19 SAVIFGKQGSGKTTY 33 (226)
T ss_pred EEEEECCCCCCHHHH
Confidence 799999999999975
No 418
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.61 E-value=3.5 Score=47.17 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=17.2
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
+.+|+.+|.|+|||..+.+ +.+.+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~-lA~~l 62 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARI-LAKAV 62 (585)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHh
Confidence 3468999999999987443 33444
No 419
>KOG0742|consensus
Probab=85.57 E-value=1.5 Score=46.06 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=29.2
Q ss_pred ccccCCCCHHHHHHHHhCCCCCC-C-HHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 199 SFESAGLREILVKNLKKSNYTKP-T-PIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 199 ~f~~~~l~~~l~~~l~~~g~~~p-~-~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
.|++.-|+|.|-+.+...-+..- | .+| .--+|+++-+|+|+|||+.
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~-------apfRNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQ-------APFRNILFYGPPGTGKTMF 400 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhccccccc-------chhhheeeeCCCCCCchHH
Confidence 35666688888888765322110 0 000 0126999999999999996
No 420
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.54 E-value=1.3 Score=46.06 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=38.6
Q ss_pred CCCCCHHHHhhhh-hhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHH
Q psy1604 218 YTKPTPIQKYAIP-AGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELV 287 (693)
Q Consensus 218 ~~~p~~~Q~~ai~-~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 287 (693)
+..+.+.|..-+. .+..+++++++++||||||.. +.+++..+- ...+++.+=-|.++.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip-----------~~~rivtIEdt~E~~ 183 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIP-----------PEERIVTIEDTPELK 183 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCC-----------chhcEEEEecccccc
Confidence 3455566655544 444678999999999999985 566665442 223677776666654
No 421
>PRK04195 replication factor C large subunit; Provisional
Probab=85.52 E-value=3.5 Score=45.96 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
.+.+++.+|+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999986
No 422
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=85.51 E-value=8.3 Score=42.02 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=14.8
Q ss_pred CEEEEccCCCChhHHHHH
Q psy1604 237 DLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll 254 (693)
-+++++++|+|||....-
T Consensus 101 vi~~vG~~GsGKTTtaak 118 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGK 118 (428)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 578899999999987443
No 423
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.35 E-value=6.8 Score=44.08 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=14.8
Q ss_pred CEEEEccCCCChhHHHHH
Q psy1604 237 DLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll 254 (693)
-+|+.+|.|+|||..+.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999987544
No 424
>KOG0738|consensus
Probab=85.30 E-value=4.4 Score=42.53 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=14.7
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
+.+|+.+|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 6899999999999985
No 425
>PRK14701 reverse gyrase; Provisional
Probab=85.27 E-value=2.7 Score=53.32 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=53.4
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhC------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCET------EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV 577 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~------~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v 577 (693)
.+.++||.++++.-+..+++.|+.. ++.+..+||+++..++.++++.+++|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999998888762 466788999999999999999999999999999974
No 426
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=85.25 E-value=2.5 Score=44.06 Aligned_cols=44 Identities=20% Similarity=0.133 Sum_probs=28.4
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVM 288 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~ 288 (693)
.|+-+.+.+|+|||||..++..+.+.. .. +.+++++..-..+-.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~-~~----------g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ-KA----------GGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc----------CCcEEEEcccchhHH
Confidence 567889999999999987544444433 22 235777765544443
No 427
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=85.24 E-value=2.6 Score=41.98 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=75.2
Q ss_pred HHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCC----CcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhccc
Q psy1604 534 IACYLCETEIATTSIHGSRLQSQREQAIHDFKTKK----MKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRT 609 (693)
Q Consensus 534 l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~----~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRa 609 (693)
|...+.. ++.+..++++.+... -.|.++. ..|+|.=+.++||+.++++.+.....-+.+.+++.||.==-
T Consensus 103 l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwF 176 (239)
T PF10593_consen 103 LPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWF 176 (239)
T ss_pred HHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcc
Confidence 3334444 677888887654433 2344443 78999999999999999999999999999888888885323
Q ss_pred -ccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhccCCC
Q psy1604 610 -GRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKFGGGG 655 (693)
Q Consensus 610 -gR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~~ 655 (693)
-|.|-...|-+|.+++ +......+.+...++-+.++.++..
T Consensus 177 GYR~gY~dl~Ri~~~~~-----l~~~f~~i~~~~e~lr~~i~~~~~~ 218 (239)
T PF10593_consen 177 GYRPGYEDLCRIYMPEE-----LYDWFRHIAEAEEELREEIKEMANN 218 (239)
T ss_pred cCCcccccceEEecCHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3666778888888632 1223333444555666667766544
No 428
>PRK10867 signal recognition particle protein; Provisional
Probab=85.24 E-value=4.9 Score=43.80 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=14.6
Q ss_pred CEEEEccCCCChhHHHHH
Q psy1604 237 DLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll 254 (693)
-+++++++|+|||....-
T Consensus 102 vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 478899999999987443
No 429
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=85.23 E-value=1.7 Score=44.24 Aligned_cols=37 Identities=30% Similarity=0.303 Sum_probs=24.2
Q ss_pred HHHHhhhhhhhc--CCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 223 PIQKYAIPAGLE--GRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 223 ~~Q~~ai~~il~--g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
+.|.+.+..++. +..++++++||||||.. +..++..+
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 345544544443 34689999999999986 44555555
No 430
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=85.11 E-value=8.1 Score=40.24 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=17.0
Q ss_pred CEEEEccCCCChhHHHHHHHHHHh
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
++++.++.|+|||..+ ..+...+
T Consensus 40 ~~ll~G~~G~GKt~~~-~~l~~~l 62 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA-LALAREL 62 (319)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHH
Confidence 5899999999999863 3344444
No 431
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=85.07 E-value=3.2 Score=41.72 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=17.9
Q ss_pred hhhcCCCEEEEccCCCChhHH
Q psy1604 231 AGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 231 ~il~g~~vlv~a~TGsGKTl~ 251 (693)
.+-.|+.+++.++.|+|||..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHH
Confidence 345789999999999999973
No 432
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=84.79 E-value=3.6 Score=45.84 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=38.3
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.|.-+++.+++|+|||...+..+.+-+ ++ +-++++++ .-|-..|+...+..+.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~-~~----------ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENAC-AN----------KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HC----------CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 567899999999999986555554443 22 22578876 4677888888888764
No 433
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.76 E-value=5.9 Score=42.93 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.1
Q ss_pred CEEEEccCCCChhHHHHH
Q psy1604 237 DLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll 254 (693)
.+|+.+|.|+|||.++.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999987544
No 434
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.73 E-value=7.7 Score=41.85 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=16.2
Q ss_pred CCEEEEccCCCChhHHHHHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIM 257 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il 257 (693)
.-+++++|+|+|||.....-+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3477899999999987544333
No 435
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.59 E-value=1 Score=44.49 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=17.0
Q ss_pred CCEEEEccCCCChhHHHHHHHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHH 259 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~ 259 (693)
.=++++++|||||+.. +..++.+
T Consensus 128 GLviiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 128 GLVIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred ceEEEECCCCCCchhh-HHHHhcc
Confidence 3478899999999986 4555543
No 436
>PRK09354 recA recombinase A; Provisional
Probab=84.47 E-value=2.7 Score=44.27 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=30.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVM 288 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~ 288 (693)
.|+-+.+.+|+|||||...+..+.+.. .. +.+++++..-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~-~~----------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ-KA----------GGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc----------CCcEEEECCccchHH
Confidence 467788999999999987555554443 22 235788876655554
No 437
>KOG0732|consensus
Probab=84.47 E-value=2.2 Score=50.72 Aligned_cols=53 Identities=23% Similarity=0.150 Sum_probs=36.3
Q ss_pred CccccCCCCHHHHHHHHhCCCC-CCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 198 ESFESAGLREILVKNLKKSNYT-KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~-~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
.+|++.+....++..|+++-+. -++|-+..-+ .+..-+.+++.+|.|+|||+.
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHH
Confidence 4588888888888888887433 2333333322 223346799999999999985
No 438
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=84.22 E-value=7.3 Score=37.15 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=18.3
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
+.+|+.+|.|+|||..+ ..+...+..
T Consensus 15 ~~~L~~G~~G~gkt~~a-~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLA-LALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 45889999999999863 334444443
No 439
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=84.21 E-value=1.6 Score=47.05 Aligned_cols=49 Identities=29% Similarity=0.445 Sum_probs=32.9
Q ss_pred hhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHH
Q psy1604 230 PAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQ 289 (693)
Q Consensus 230 ~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q 289 (693)
|.-...+++++.+.||||||.+ +..++..+...+. +++|.=|.-+....
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~g~----------~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQA-IRHLLDQIRARGD----------RAIIYDPKGEFTER 58 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHTT-----------EEEEEEETTHHHHH
T ss_pred ccchhhCcEEEECCCCCCHHHH-HHHHHHHHHHcCC----------EEEEEECCchHHHH
Confidence 3444668999999999999974 6778877766532 56777777666443
No 440
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.11 E-value=4.7 Score=46.08 Aligned_cols=19 Identities=26% Similarity=0.287 Sum_probs=15.5
Q ss_pred CCEEEEccCCCChhHHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll 254 (693)
+.+|+++|.|+|||..+.+
T Consensus 39 ha~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3588999999999987544
No 441
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.10 E-value=3.8 Score=46.05 Aligned_cols=28 Identities=7% Similarity=0.240 Sum_probs=18.6
Q ss_pred CCceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 346 LASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
..+.+++||||+|+|.... ...+.+.+.
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LE 144 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLE 144 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHh
Confidence 3467899999999986433 334444444
No 442
>PRK12608 transcription termination factor Rho; Provisional
Probab=84.04 E-value=9.4 Score=40.52 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=26.5
Q ss_pred HHhhhhhhh---cCCCEEEEccCCCChhHHHHHHHHHHhhcC
Q psy1604 225 QKYAIPAGL---EGRDLMGCAQTGSGKTAAFLIPIMHHLLES 263 (693)
Q Consensus 225 Q~~ai~~il---~g~~vlv~a~TGsGKTl~~ll~il~~l~~~ 263 (693)
-.++|..+. .|+..+|.++.|+|||.. +.-+++.+..+
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTL-l~~la~~i~~~ 160 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVL-LQQIAAAVAAN 160 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHH-HHHHHHHHHhc
Confidence 334555554 789999999999999986 44455555443
No 443
>PF12846 AAA_10: AAA-like domain
Probab=83.97 E-value=1.6 Score=44.91 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=30.2
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVM 288 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~ 288 (693)
+.++++.++||+|||.... .++..+...+ ..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~g----------~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRRG----------PRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHcC----------CCEEEEcCCchHHH
Confidence 3689999999999998754 5655555443 35778777655544
No 444
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=83.96 E-value=0.37 Score=36.66 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.+..+++.+++|+|||.. +-+++.+
T Consensus 22 ~g~~tli~G~nGsGKSTl--lDAi~~~ 46 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTL--LDAIQTV 46 (62)
T ss_pred CCcEEEEECCCCCCHHHH--HHHHHHH
Confidence 345799999999999984 4444433
No 445
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=83.95 E-value=11 Score=42.21 Aligned_cols=29 Identities=10% Similarity=0.360 Sum_probs=19.2
Q ss_pred CCceeEEEEccchhhhhCCchHHHHHHhcc
Q psy1604 346 LASVRFVVLDEADRMLDMGFLGDIQHVMQH 375 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~~~~~~i~~i~~~ 375 (693)
....+++||||||+|.... ...+.+.+..
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEE 143 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEE 143 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhh
Confidence 3578999999999986433 3344444443
No 446
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=83.81 E-value=4.9 Score=40.05 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=26.2
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcC
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAP 282 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~P 282 (693)
..|.-++++|++|+|||...+-.+++.+... +.++++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~----------g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ----------GKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCceEEEeC
Confidence 3567889999999999976444444444331 225777763
No 447
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=83.71 E-value=0.76 Score=49.65 Aligned_cols=47 Identities=28% Similarity=0.349 Sum_probs=35.6
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
++++.|+||||||..+++|-+-.. + ..++|+=|.-++........++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~---~----------~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW---P----------GSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC---C----------CCEEEEccchhHHHHHHHHHHH
Confidence 578999999999999888865321 1 2589999998998776655544
No 448
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=83.53 E-value=1.8 Score=45.51 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=14.9
Q ss_pred CCEEEEccCCCChhHHH
Q psy1604 236 RDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ 252 (693)
.++++.+|+|+|||..+
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 57999999999999863
No 449
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=83.51 E-value=2.9 Score=47.25 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=17.8
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
+.+|+.||.|+|||..+.+ +...+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~-lAk~L~ 63 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI-FAKAIN 63 (605)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHhc
Confidence 4588999999999986443 334443
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=83.28 E-value=1.8 Score=41.86 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=17.2
Q ss_pred EEEEccCCCChhHHHHHHHHHHhh
Q psy1604 238 LMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 238 vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
+++++|||||||.. +..++..+.
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhh
Confidence 68999999999986 444555543
No 451
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=83.22 E-value=6.8 Score=36.78 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=29.2
Q ss_pred EEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 238 LMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 238 vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
+++.+++|||||.-+.-.+.. . +.++++++....+-..+.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~----------~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----L----------GGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----c----------CCCeEEEEccCcCCHHHHHHHHH
Confidence 578999999999864433322 1 12578887777665555555444
No 452
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=83.20 E-value=1 Score=50.02 Aligned_cols=50 Identities=32% Similarity=0.492 Sum_probs=39.0
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.++++.|+||||||..+++|.+- ..+. .+||.=|.-+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll---~~~~----------s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL---NYPG----------SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH---hccC----------CEEEEECCCcHHHHHHHHHHHCC
Confidence 57999999999999999988762 2221 47999999999887777666643
No 453
>KOG0058|consensus
Probab=83.13 E-value=2.5 Score=47.89 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=30.8
Q ss_pred CCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeecc
Q psy1604 346 LASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSAT 392 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT 392 (693)
+++-.++|+|||-.-+|......+...+.... ..++++.=|.
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~-----~~rTVlvIAH 661 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLM-----QGRTVLVIAH 661 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhh-----cCCeEEEEeh
Confidence 56788999999999999888888877776543 2255555553
No 454
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=82.75 E-value=5.2 Score=47.97 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=65.1
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-CcccccCCCCCCCEE
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVAT-AVASRGLDIKGIRHV 590 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT-~v~~~GiDip~v~~V 590 (693)
..++++.|.++|.--|+.-++.+++ ..+++..+..=.+.+++.++++..++|+++|+|.| .++..++-+.++.++
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLl 720 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLL 720 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeE
Confidence 5668899999998887776666655 46677888877889999999999999999999999 567888999999998
Q ss_pred EE
Q psy1604 591 IN 592 (693)
Q Consensus 591 I~ 592 (693)
|.
T Consensus 721 II 722 (1139)
T COG1197 721 II 722 (1139)
T ss_pred EE
Confidence 84
No 455
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=82.74 E-value=2.6 Score=42.37 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=18.6
Q ss_pred hhhHHHHHhcCCcCCCceeEEEEccchhhh
Q psy1604 332 MGRLKDILDRGRISLASVRFVVLDEADRML 361 (693)
Q Consensus 332 p~~L~~~l~~~~~~l~~~~~lVlDEah~l~ 361 (693)
|+-|..+|. +++.=+++.+||.|++.
T Consensus 91 ~gDlaaiLt----~Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 91 PGDLAAILT----NLEEGDVLFIDEIHRLS 116 (332)
T ss_pred hhhHHHHHh----cCCcCCeEEEehhhhcC
Confidence 445555554 35667899999999984
No 456
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=82.25 E-value=4.8 Score=45.62 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=17.4
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
-+|+.+|.|+|||.++.+ +...+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~-lAk~L~ 63 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA-FARCLN 63 (563)
T ss_pred EEEEECCCCCCHHHHHHH-HHHhhc
Confidence 478999999999987443 444443
No 457
>KOG1807|consensus
Probab=82.21 E-value=2 Score=48.51 Aligned_cols=71 Identities=17% Similarity=0.101 Sum_probs=52.7
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
.+-.-|..|+...+..+-.|+++|+|+|||++- +-+++.|+.+.... ...-.+|++|-|..-+.|....+-
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~vt-lkav~tLL~n~s~~----~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVT-LKAVDTLLLNSSGY----TEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred eecHHHHHHHHHHhhhhhheeecCCCCCceeeh-HHHHHHHHhccccc----ccccceeeeehhhHHHHHHHHHHH
Confidence 345569999988888888999999999999984 45666666654221 233468999999888888765543
No 458
>PRK10865 protein disaggregation chaperone; Provisional
Probab=82.06 E-value=8.2 Score=46.24 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=17.9
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.+.++.+|+|+|||... -.+...+
T Consensus 200 ~n~lL~G~pGvGKT~l~-~~la~~i 223 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV-EGLAQRI 223 (857)
T ss_pred CceEEECCCCCCHHHHH-HHHHHHh
Confidence 58999999999999864 3334444
No 459
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=82.03 E-value=1.1 Score=50.91 Aligned_cols=49 Identities=24% Similarity=0.211 Sum_probs=40.0
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
+++++.||||||||..+++|-+-.. + ..+||+=|.-|+........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~---~----------~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW---E----------DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC---C----------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 5799999999999999999987542 1 14899999999998887777664
No 460
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=81.91 E-value=3.6 Score=41.70 Aligned_cols=27 Identities=7% Similarity=-0.095 Sum_probs=20.6
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.|.-+++.+++|+|||...+-.+.+.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a 61 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA 61 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 567789999999999986555555544
No 461
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=81.89 E-value=2 Score=49.22 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=37.3
Q ss_pred CHHHHHHHHhCCCCCCCHHHHhhhhh--hhcCCCEEEEccCCCChhHHHHHHHHHHhhcC
Q psy1604 206 REILVKNLKKSNYTKPTPIQKYAIPA--GLEGRDLMGCAQTGSGKTAAFLIPIMHHLLES 263 (693)
Q Consensus 206 ~~~l~~~l~~~g~~~p~~~Q~~ai~~--il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~ 263 (693)
++.+.+.+++.+-..+ +....+|. -...+++++.+.||||||.+ +.-++..+...
T Consensus 156 ~~~l~k~lk~~~~~s~--i~I~gvPip~~~E~~H~li~GttGSGKS~~-i~~LL~~ir~R 212 (732)
T PRK13700 156 PKDVARMLKKDGKDSD--IRIGDLPIIRDSEIQNFCLHGTVGAGKSEV-IRRLANYARQR 212 (732)
T ss_pred HHHHHHHHHhcCCCCC--eeEccccCCcchhhcceEEeCCCCCCHHHH-HHHHHHHHHHc
Confidence 3567777777654433 33344444 33568999999999999996 56677776554
No 462
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=81.81 E-value=1.5 Score=48.66 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=23.3
Q ss_pred HHHHhhhhhhhcC-C-CEEEEccCCCChhHHHHHHHHHHh
Q psy1604 223 PIQKYAIPAGLEG-R-DLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 223 ~~Q~~ai~~il~g-~-~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
+-|.+.+..+... + -+++++|||||||.. +..+++.+
T Consensus 228 ~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 228 PELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 3344444444432 3 478999999999986 44556555
No 463
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=81.76 E-value=7.2 Score=46.79 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=18.1
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.+.++.+|+|+|||..+- .+...+
T Consensus 195 ~n~lL~G~pGvGKT~l~~-~la~~i 218 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE-GLAQRI 218 (852)
T ss_pred CceEEEcCCCCCHHHHHH-HHHHHH
Confidence 689999999999998643 344444
No 464
>PRK09183 transposase/IS protein; Provisional
Probab=81.69 E-value=3.3 Score=41.98 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=18.7
Q ss_pred hhhcCCCEEEEccCCCChhHHHH
Q psy1604 231 AGLEGRDLMGCAQTGSGKTAAFL 253 (693)
Q Consensus 231 ~il~g~~vlv~a~TGsGKTl~~l 253 (693)
.+.++.++++.+|+|+|||..+.
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHH
Confidence 35578899999999999997533
No 465
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.66 E-value=10 Score=43.53 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=18.0
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
..+|+.+|.|+|||..+.. +...+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~-lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI-LAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHHHHH-HHHHhc
Confidence 4679999999999987443 444443
No 466
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=81.51 E-value=1.8 Score=47.17 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=34.7
Q ss_pred hhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHH
Q psy1604 229 IPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQ 289 (693)
Q Consensus 229 i~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q 289 (693)
++.-...+++++.++||||||.. +..++..+...+ .+++|+=|..++...
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~~----------~~~vi~D~kg~~~~~ 85 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRARG----------DRAIIYDPNGGFVSK 85 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhcC----------CCEEEEeCCcchhHh
Confidence 34444568999999999999985 445555554432 257888888776543
No 467
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=81.37 E-value=2.2 Score=44.54 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=17.3
Q ss_pred hhcCCCEEEEccCCCChhHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~ 251 (693)
+..+.+++++++||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 34678999999999999984
No 468
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=81.27 E-value=4.1 Score=47.42 Aligned_cols=71 Identities=21% Similarity=0.150 Sum_probs=53.9
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.+++-|++++... ...++|.|..|||||.+..--+.+.+....- ....+|.++=|+..|.++.+.+.+...
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v-------~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGV-------DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCc-------ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999999776 5578999999999999855555554443321 222589999999999999988888753
No 469
>KOG0347|consensus
Probab=81.21 E-value=2.5 Score=46.11 Aligned_cols=127 Identities=27% Similarity=0.371 Sum_probs=86.6
Q ss_pred hhhhhchhhhHHHHhhccc---cccceeEEEechhhhhhhcCcccchhHHhhccc-CCccccccceeecccCchhhhcce
Q psy1604 403 NILVATMGRLKDILDRGRI---SLASVRFVVLDEADRMLDMGFLGDIQHVMQHST-MPDVANRQTLMFSATFPETIQKNY 478 (693)
Q Consensus 403 ~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~~~~l~~~~ 478 (693)
.+.+.+|+|+..++..... .+..+.++++|+.+++.+.+....+..++.+.. ......++.+.||+|+.-.+....
T Consensus 315 ~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~ 394 (731)
T KOG0347|consen 315 DIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPL 394 (731)
T ss_pred CEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChh
Confidence 4456778888887776655 356788999999999999999988888877665 455677899999999765543211
Q ss_pred EEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhh
Q psy1604 479 IFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCE 540 (693)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~ 540 (693)
... -...........|++.|++.+.-....++|-..+....+..|.+.+..
T Consensus 395 ~~~-----------~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~ 445 (731)
T KOG0347|consen 395 SSS-----------RKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIE 445 (731)
T ss_pred HHh-----------hhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhc
Confidence 100 000001123456777777777766666777777778888877776643
No 470
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=80.95 E-value=5.8 Score=39.06 Aligned_cols=46 Identities=22% Similarity=0.118 Sum_probs=27.1
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTR 284 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr 284 (693)
.|+-+.+.+++|+|||..++..+...+...... ....+++++..-.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~-----g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELG-----GLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccC-----CCcceEEEEecCC
Confidence 457789999999999986554444333221100 1123677776643
No 471
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=80.91 E-value=4.7 Score=44.43 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=52.2
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGAS 313 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~ 313 (693)
.|.-+++.+++|+|||...+. ++..+... +.+++++..- +-..|+...+.++.... .-..+...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq-~a~~~a~~----------g~kvlYvs~E-Es~~qi~~ra~rlg~~~--~~l~~~~e-- 156 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQ-VACQLAKN----------QMKVLYVSGE-ESLQQIKMRAIRLGLPE--PNLYVLSE-- 156 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHH-HHHHHHhc----------CCcEEEEECc-CCHHHHHHHHHHcCCCh--HHeEEcCC--
Confidence 567789999999999986443 33333322 1257888754 55667766666553111 00000000
Q ss_pred hHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhh
Q psy1604 314 SMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRML 361 (693)
Q Consensus 314 ~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~ 361 (693)
.+.+.+...++. .+.++||||....+.
T Consensus 157 ----------------~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 157 ----------------TNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred ----------------CCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 123444444432 356799999999875
No 472
>KOG1806|consensus
Probab=80.79 E-value=2.8 Score=48.98 Aligned_cols=72 Identities=25% Similarity=0.300 Sum_probs=55.3
Q ss_pred CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 217 NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
++...+|-|.+++..-+.-..+++.+|+|+|||-.+ .-++.-+..+ ...++++|++.+..-.+|..+.+.+
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~a-vqil~~lyhn--------~p~qrTlivthsnqaln~lfeKi~~ 805 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVA-VQILSVLYHN--------SPNQRTLIVTHSNQALNQLFEKIMA 805 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchh-hhhhhhhhhc--------CCCcceEEEEecccchhHHHHHHHh
Confidence 455678899999988888889999999999999763 3344444443 3456899999998888888777666
Q ss_pred H
Q psy1604 297 Y 297 (693)
Q Consensus 297 ~ 297 (693)
.
T Consensus 806 ~ 806 (1320)
T KOG1806|consen 806 L 806 (1320)
T ss_pred c
Confidence 4
No 473
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=80.66 E-value=5.1 Score=45.29 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=22.6
Q ss_pred CCceeEEEEccchhhhhCCchHHHHHHhcc
Q psy1604 346 LASVRFVVLDEADRMLDMGFLGDIQHVMQH 375 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~~~~~~i~~i~~~ 375 (693)
+++-+++|+||+-.-+|......+...+..
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 567789999999988777666666666553
No 474
>PHA00012 I assembly protein
Probab=80.62 E-value=6.6 Score=40.59 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHHHHHHHHhh
Q psy1604 238 LMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 238 vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
.++.+..|+|||+.++.-++..+.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 578999999999987776666553
No 475
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=80.55 E-value=8.3 Score=38.46 Aligned_cols=45 Identities=16% Similarity=0.019 Sum_probs=24.9
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcCCCCc-ccCCCCCCeEEEEc
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLESPGEL-VTGYCAQPEVIICA 281 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~-~~~~~~~~~vLil~ 281 (693)
-.++.++.|+|||...+-.+++...-.+... ........+|||++
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 3689999999999875544443321111000 00012345788887
No 476
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=80.34 E-value=13 Score=38.82 Aligned_cols=59 Identities=19% Similarity=0.384 Sum_probs=32.7
Q ss_pred EEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeecc
Q psy1604 327 ILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSAT 392 (693)
Q Consensus 327 IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT 392 (693)
|-|-....+.+.+..... ....+++|||+||.|... -...+.+++.. |+ +..+++.|..
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEE---Pp--~~~fILi~~~ 162 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEE---PG--NGTLILIAPS 162 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhC---CC--CCeEEEEECC
Confidence 333344445555554432 357899999999998533 24444555543 33 3345555543
No 477
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=80.33 E-value=7.4 Score=46.55 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=23.3
Q ss_pred hhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccC
Q psy1604 333 GRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHS 376 (693)
Q Consensus 333 ~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~ 376 (693)
+.|...+++ ...++|+|||++.+. ......+..++..-
T Consensus 658 g~L~~~v~~-----~p~svvllDEieka~-~~v~~~Llq~ld~g 695 (852)
T TIGR03345 658 GVLTEAVRR-----KPYSVVLLDEVEKAH-PDVLELFYQVFDKG 695 (852)
T ss_pred chHHHHHHh-----CCCcEEEEechhhcC-HHHHHHHHHHhhcc
Confidence 345555553 346799999999764 34455555555543
No 478
>KOG2227|consensus
Probab=80.19 E-value=8.2 Score=41.65 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=18.1
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
....-|++.+|+|||.. +.-++..+
T Consensus 175 ~gSlYVsG~PGtgkt~~-l~rvl~~~ 199 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTAL-LSRVLDSL 199 (529)
T ss_pred CcceEeeCCCCcchHHH-HHHHHHhh
Confidence 35789999999999986 33344443
No 479
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=80.18 E-value=1.7 Score=45.12 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=14.3
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
.++++.+|+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4689999999999985
No 480
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=79.68 E-value=12 Score=38.97 Aligned_cols=58 Identities=12% Similarity=-0.023 Sum_probs=32.8
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHH-HHHHHHHHHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTREL-VMQIHEVACKY 297 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~L-a~Q~~~~~~~~ 297 (693)
|.-+.+.+++|+|||...+..++...+..... ..+.+++++.---.+ ..++.+.+.++
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~g-----g~~~~vvYIdtE~~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMG-----GGNGKVAYIDTEGTFRPDRIRAIAERF 154 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhc-----CCCCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 35678999999999976554444332221100 123478888644322 45555555554
No 481
>COG1485 Predicted ATPase [General function prediction only]
Probab=79.61 E-value=14 Score=38.54 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=63.3
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSM 315 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 315 (693)
+.+-+.++.|.|||. ++-++-+.+....+ .-++...-+..+++.+.++... .
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~~~k------------~R~HFh~FM~~vH~~l~~l~g~-----------~--- 117 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPGERK------------RRLHFHRFMARVHQRLHTLQGQ-----------T--- 117 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCcccc------------ccccHHHHHHHHHHHHHHHcCC-----------C---
Confidence 678999999999998 45554443332211 1245567788888888776411 1
Q ss_pred HHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCch
Q psy1604 316 HFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPE 395 (693)
Q Consensus 316 ~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~ 395 (693)
|.+ +....+ ...+.++|.|||.|- .|.+=.-.+..++..+. . .+..++..|.|.|+
T Consensus 118 ----------dpl---~~iA~~-------~~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf-~--~GV~lvaTSN~~P~ 173 (367)
T COG1485 118 ----------DPL---PPIADE-------LAAETRVLCFDEFEV-TDIADAMILGRLLEALF-A--RGVVLVATSNTAPD 173 (367)
T ss_pred ----------Ccc---HHHHHH-------HHhcCCEEEeeeeee-cChHHHHHHHHHHHHHH-H--CCcEEEEeCCCChH
Confidence 000 001111 134667899999983 23221122222222211 1 26788999999998
Q ss_pred hHHh
Q psy1604 396 TIQK 399 (693)
Q Consensus 396 ~~~~ 399 (693)
.+..
T Consensus 174 ~LY~ 177 (367)
T COG1485 174 NLYK 177 (367)
T ss_pred Hhcc
Confidence 7655
No 482
>PRK06904 replicative DNA helicase; Validated
Probab=79.45 E-value=18 Score=40.15 Aligned_cols=118 Identities=12% Similarity=0.075 Sum_probs=58.4
Q ss_pred hhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEE-eC
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLH-YG 310 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~-~g 310 (693)
+..|.=+++.|.||.|||.-+ +-+...+... .+..++|.+. -.-..|+...+...... +....+ .|
T Consensus 218 l~~G~LiiIaarPg~GKTafa-lnia~~~a~~---------~g~~Vl~fSl-EMs~~ql~~Rlla~~s~--v~~~~i~~g 284 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFA-MNLCENAAMA---------SEKPVLVFSL-EMPAEQIMMRMLASLSR--VDQTKIRTG 284 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHH-HHHHHHHHHh---------cCCeEEEEec-cCCHHHHHHHHHHhhCC--CCHHHhccC
Confidence 334566788999999999854 4444333221 1224666644 35566666554433211 111111 23
Q ss_pred -CCChHHHHH------HHhcCCcEEEe-----chhhHHHHHhcCCcCCCceeEEEEccchhhhh
Q psy1604 311 -GASSMHFNR------QLEKGCNILVA-----TMGRLKDILDRGRISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 311 -g~~~~~~~~------~~~~~~~IlV~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~ 362 (693)
.....++.+ .+.....+.|- |+..+....++-......+++||||=.+.|..
T Consensus 285 ~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 285 QNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 233333322 12223446663 34444433322111123578999999987753
No 483
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=79.35 E-value=12 Score=36.06 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=51.0
Q ss_pred CCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-----ccc-cCCCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-----ASR-GLDIKG 586 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-----~~~-GiDip~ 586 (693)
...++||.++++..+...+..+.. .++.+..++|+.+..+....+. +...|+|+|.- +.. -.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 456799999999998887776644 3677888999887766544332 56789999952 222 256677
Q ss_pred CCEEEE
Q psy1604 587 IRHVIN 592 (693)
Q Consensus 587 v~~VI~ 592 (693)
++++|.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 888764
No 484
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.35 E-value=11 Score=43.16 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=28.6
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHH
Q psy1604 197 IESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ 252 (693)
..+++++-.++..++.+... ++. .......++-+++.+|+|+|||..+
T Consensus 80 P~~ldel~~~~~ki~~l~~~-------l~~-~~~~~~~~~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETW-------LKA-QVLENAPKRILLITGPSGCGKSTTI 127 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHH-------HHh-cccccCCCcEEEEECCCCCCHHHHH
Confidence 35677777777776665432 000 0001122345899999999999853
No 485
>CHL00095 clpC Clp protease ATP binding subunit
Probab=79.33 E-value=13 Score=44.44 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAFL 253 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~l 253 (693)
.+++++.+|+|+|||..+-
T Consensus 200 ~~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAE 218 (821)
T ss_pred cCCeEEECCCCCCHHHHHH
Confidence 3689999999999998743
No 486
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=79.19 E-value=3.5 Score=50.96 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=43.8
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
.+++++|.|..|||||.+...-+++.++...+ ..-.++|||+.|+.-+..+...+..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~------~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGP------LDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCC------CChhHeeeeeccHHHHHHHHHHHHH
Confidence 46799999999999999977777777776521 1233799999999888877766654
No 487
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=79.09 E-value=7.3 Score=37.17 Aligned_cols=136 Identities=22% Similarity=0.312 Sum_probs=70.6
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc-CCCeeE--EEEeC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY-SSVLKI--CLHYG 310 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~-~~~l~~--~~~~g 310 (693)
.|+-.-+.+|.|.||+. ++.+..+|+....+... -..+-+--.|+.+||..+. .++.-.. ...+.+ .+-+|
T Consensus 26 ~g~iTs~IGPNGAGKST--LLS~~sRL~~~d~G~i~---i~g~~~~~~~s~~LAk~lS-ILkQ~N~i~~rlTV~dLv~FG 99 (252)
T COG4604 26 KGGITSIIGPNGAGKST--LLSMMSRLLKKDSGEIT---IDGLELTSTPSKELAKKLS-ILKQENHINSRLTVRDLVGFG 99 (252)
T ss_pred CCceeEEECCCCccHHH--HHHHHHHhccccCceEE---EeeeecccCChHHHHHHHH-HHHhhchhhheeEHHHHhhcC
Confidence 56778899999999998 78888888876543211 0112355578889987542 2222100 000111 11122
Q ss_pred ------CCChHHHHHHHhcCCcEEEe--chhhHHHHHhcC-----C---cCCCceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 311 ------GASSMHFNRQLEKGCNILVA--TMGRLKDILDRG-----R---ISLASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 311 ------g~~~~~~~~~~~~~~~IlV~--Tp~~L~~~l~~~-----~---~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
|....+....+..--+.+=- --.+.++-|.-+ . +-.++-+||.+||-=.-+|+.+.-.+.++++
T Consensus 100 RfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lr 179 (252)
T COG4604 100 RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179 (252)
T ss_pred CCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHH
Confidence 22222222222110011000 112333333211 1 2356789999999988888887777777776
Q ss_pred c
Q psy1604 375 H 375 (693)
Q Consensus 375 ~ 375 (693)
+
T Consensus 180 r 180 (252)
T COG4604 180 R 180 (252)
T ss_pred H
Confidence 5
No 488
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.04 E-value=5.7 Score=44.13 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=54.4
Q ss_pred CCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC
Q psy1604 518 EDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA 576 (693)
Q Consensus 518 ~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~ 576 (693)
.+.+||.+++++-+......|...++.+..++++.+..++..++.....++.+|+++|+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46789999999999999999999999999999999999999999999999999999996
No 489
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=78.97 E-value=3.1 Score=47.55 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=23.7
Q ss_pred CCceeEEEEccchhhhhCCchHHHHHHhcc
Q psy1604 346 LASVRFVVLDEADRMLDMGFLGDIQHVMQH 375 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~~~~~~i~~i~~~ 375 (693)
+.+-.++|+|||..-+|......+...+..
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~ 510 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKK 510 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHH
Confidence 456689999999998888777777776653
No 490
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=78.85 E-value=4.8 Score=40.69 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=49.6
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHH-HHHHHHhcCCCeeEEEEeCCCCh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIH-EVACKYAYSSVLKICLHYGGASS 314 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~-~~~~~~~~~~~l~~~~~~gg~~~ 314 (693)
.-+=++++.|+|||...+-.++...+..... ....+++++.-....-.+-. +.++++. ...
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~-----g~~~~vvyidTe~~f~~~Rl~~i~~~~~-------------~~~ 100 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIG-----GLGGKVVYIDTEGTFSPERLQQIAERFG-------------LDP 100 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTT-----SSSSEEEEEESSSSS-HHHHHHHHHHTT-------------S-H
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccc-----cCCCceEEEeCCCCCCHHHHHHHhhccc-------------ccc
Confidence 3445899999999965444334333322111 23457888865443322221 2222221 011
Q ss_pred HHHHHHHhcCCcEEEechhhHHHHHhcC--CcCCCceeEEEEccchhhh
Q psy1604 315 MHFNRQLEKGCNILVATMGRLKDILDRG--RISLASVRFVVLDEADRML 361 (693)
Q Consensus 315 ~~~~~~~~~~~~IlV~Tp~~L~~~l~~~--~~~l~~~~~lVlDEah~l~ 361 (693)
...+.+=.-+-+.+...+..++..- .+.-.++++||||-+-.+.
T Consensus 101 ---~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalf 146 (256)
T PF08423_consen 101 ---EEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALF 146 (256)
T ss_dssp ---HHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHH
T ss_pred ---chhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHH
Confidence 1112110111122445555554321 1112479999999987664
No 491
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.64 E-value=7.5 Score=43.23 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.4
Q ss_pred CEEEEccCCCChhHHHHH
Q psy1604 237 DLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll 254 (693)
-+++.+|.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999986444
No 492
>KOG1513|consensus
Probab=78.50 E-value=2.1 Score=48.47 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=89.3
Q ss_pred CCCCCCHHHHhhhhhhhc--------C--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHH
Q psy1604 217 NYTKPTPIQKYAIPAGLE--------G--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTREL 286 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~--------g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 286 (693)
.-..+...|.+++-...+ | -.+|+-...|.||-....--|++..++. +.++|-+.-+..|
T Consensus 261 ~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG----------RKrAlW~SVSsDL 330 (1300)
T KOG1513|consen 261 DSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG----------RKRALWFSVSSDL 330 (1300)
T ss_pred cccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc----------cceeEEEEecccc
Confidence 334677888888765543 2 2467776677777544333455655544 3368888888788
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEe----CCCChHHHHHHHhcCCcEEEechhhHHHHHhc--CCc--CC--------Cce-
Q psy1604 287 VMQIHEVACKYAYSSVLKICLHY----GGASSMHFNRQLEKGCNILVATMGRLKDILDR--GRI--SL--------ASV- 349 (693)
Q Consensus 287 a~Q~~~~~~~~~~~~~l~~~~~~----gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~--~~~--~l--------~~~- 349 (693)
--.-.+.++.... +++.+..+. +..+.++. . .-.--|+++|+-.|.--... ++. .+ .++
T Consensus 331 KfDAERDL~DigA-~~I~V~alnK~KYakIss~en-~--n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~fe 406 (1300)
T KOG1513|consen 331 KFDAERDLRDIGA-TGIAVHALNKFKYAKISSKEN-T--NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFE 406 (1300)
T ss_pred ccchhhchhhcCC-CCccceehhhccccccccccc-C--CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccc
Confidence 7766666666543 334444331 11111100 0 11236999999877643221 000 01 122
Q ss_pred eEEEEccchhhhhCC---------chHHHHHHhccCCCCCCCCcceEEeeccCchh
Q psy1604 350 RFVVLDEADRMLDMG---------FLGDIQHVMQHSTMPDVANRQTLMFSATFPET 396 (693)
Q Consensus 350 ~~lVlDEah~l~~~~---------~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~ 396 (693)
.+|||||||+..+.. ....+..+-+.+ ++.+++.-|||=..+
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~L-----P~ARVVYASATGAsE 457 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKL-----PNARVVYASATGASE 457 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhC-----CCceEEEeeccCCCC
Confidence 589999999876511 233333333332 378899999995433
No 493
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=78.36 E-value=6.9 Score=38.78 Aligned_cols=25 Identities=24% Similarity=0.098 Sum_probs=18.8
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMH 258 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~ 258 (693)
.|.-+.+.+++|+|||...+..++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4577899999999999865444443
No 494
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=78.31 E-value=6 Score=45.46 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=37.8
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHH--HHHHHHHHHHHHhcC
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRE--LVMQIHEVACKYAYS 300 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~--La~Q~~~~~~~~~~~ 300 (693)
..++++.++||+|||..+. .++.+.++.+ ..++++=|-.. |...+...+++.+..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~-~l~~q~i~~g----------~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAE-LLITQDIRRG----------DVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCcEEEECCCCCCHHHHHH-HHHHHHHHcC----------CeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 4789999999999998754 4444444432 24677777654 777777777776543
No 495
>PHA00350 putative assembly protein
Probab=78.24 E-value=7.2 Score=41.84 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=16.6
Q ss_pred EEEEccCCCChhHHHHHH-HHHHh
Q psy1604 238 LMGCAQTGSGKTAAFLIP-IMHHL 260 (693)
Q Consensus 238 vlv~a~TGsGKTl~~ll~-il~~l 260 (693)
.++.+..|||||+.++-- ++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 478899999999886653 44333
No 496
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=78.02 E-value=14 Score=38.82 Aligned_cols=28 Identities=11% Similarity=0.310 Sum_probs=18.5
Q ss_pred CCceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 346 LASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
....+++||||+|+|.... ...+.+.+.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LE 135 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLE 135 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhc
Confidence 3567899999999985432 334444444
No 497
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=77.73 E-value=13 Score=40.78 Aligned_cols=54 Identities=15% Similarity=-0.012 Sum_probs=31.2
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
..|.-+++.|++|+|||...+--+.+.....+ ..+++++. -.-..|+...+...
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g----------~~vl~~Sl-Em~~~~i~~R~~~~ 246 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEG----------KPVAFFSL-EMSAEQLAMRMLSS 246 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCC----------CeEEEEeC-cCCHHHHHHHHHHH
Confidence 34567889999999999764433333333222 24666644 34455555555443
No 498
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=77.65 E-value=14 Score=40.52 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=35.4
Q ss_pred CCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 218 YTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 218 ~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
+....+-=.+.+.-+..|.-+++.|++|+|||...+--+.+.....+ ..+++++. -.-..|+...+
T Consensus 177 i~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g----------~~v~~fSl-Em~~~~l~~Rl 242 (421)
T TIGR03600 177 LSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREG----------KPVLFFSL-EMSAEQLGERL 242 (421)
T ss_pred eeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCC----------CcEEEEEC-CCCHHHHHHHH
Confidence 33333333333443445677889999999999864443333332322 24677652 23344544443
No 499
>KOG0342|consensus
Probab=77.63 E-value=1.9 Score=46.26 Aligned_cols=199 Identities=25% Similarity=0.359 Sum_probs=114.2
Q ss_pred hhhhhhhchhhhHHHHhhcc-ccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceE
Q psy1604 401 GCNILVATMGRLKDILDRGR-ISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYI 479 (693)
Q Consensus 401 ~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~ 479 (693)
...+++.+|+++.+++.... +.+....++++|++++++++++..++..+..... ..++.++|++|.++..++...
T Consensus 205 ~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp----k~rqt~LFSAT~~~kV~~l~~ 280 (543)
T KOG0342|consen 205 GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILP----KQRQTLLFSATQPSKVKDLAR 280 (543)
T ss_pred cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhcc----ccceeeEeeCCCcHHHHHHHH
Confidence 34556778899988887654 4556678999999999999999999988887655 788999999999888753221
Q ss_pred EEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhC-C-CceEEec-CCCCHHH
Q psy1604 480 FIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCET-E-IATTSIH-GSRLQSQ 556 (693)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~-~-~~v~~lh-g~~~~~~ 556 (693)
.. ... ...+..+....+... ...-.+.-|.+++....-.+..+|+++ + +++.++- ..|+..-
T Consensus 281 ~~-L~~--------d~~~v~~~d~~~~~T------he~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~ 345 (543)
T KOG0342|consen 281 GA-LKR--------DPVFVNVDDGGERET------HERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKF 345 (543)
T ss_pred Hh-hcC--------CceEeecCCCCCcch------hhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHH
Confidence 11 000 111111111111110 011223455667766677777777654 2 5554443 4444444
Q ss_pred HHHHHHHHhcCCCcEEEE---------eCc------ccccCCCCCCCEEE--EcCCCC--------Chhhhhhhhccccc
Q psy1604 557 REQAIHDFKTKKMKVLVA---------TAV------ASRGLDIKGIRHVI--NYDLPQ--------EIDEYVHRIGRTGR 611 (693)
Q Consensus 557 R~~~~~~F~~g~~~ILVa---------T~v------~~~GiDip~v~~VI--~~d~p~--------s~~~y~Qr~GRagR 611 (693)
-..+++. -+++|+.- |.+ ++.||=+ ++-|. -+|.|. -+++-.|-|=|.||
T Consensus 346 ~~~lL~~---~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~--cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGR 420 (543)
T KOG0342|consen 346 HAELLNY---IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILV--CTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGR 420 (543)
T ss_pred HHHHHhh---cCCchhhhhcCCcccccchHHHHHhhcccceEE--ecchhhccCCCCCceEEEEeCCCCCHHHHHHHhcc
Confidence 4444431 12222211 111 1223222 00011 255663 56777899999999
Q ss_pred CCCcceEEEEeC
Q psy1604 612 VGNKGRATSFYD 623 (693)
Q Consensus 612 ~G~~G~~~~~~~ 623 (693)
.|+.|.-=-=+.
T Consensus 421 TaR~gk~G~alL 432 (543)
T KOG0342|consen 421 TAREGKEGKALL 432 (543)
T ss_pred ccccCCCceEEE
Confidence 999887655554
No 500
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.49 E-value=11 Score=43.20 Aligned_cols=28 Identities=7% Similarity=0.310 Sum_probs=18.8
Q ss_pred CCceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 346 LASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
+...+++||||+|.|.... ...+.+.+.
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LE 146 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLE 146 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHh
Confidence 4578999999999985432 334444444
Done!