Query psy1604
Match_columns 693
No_of_seqs 445 out of 3269
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 19:20:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.3E-69 7.8E-74 591.9 49.5 428 149-652 7-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.7E-58 5.7E-63 504.5 45.5 400 186-656 3-413 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.6E-55 5.5E-60 479.8 38.9 375 190-647 29-404 (410)
4 3eiq_A Eukaryotic initiation f 100.0 1.2E-53 4E-58 465.6 36.4 376 193-651 35-412 (414)
5 1s2m_A Putative ATP-dependent 100.0 5.8E-53 2E-57 458.1 38.7 372 196-651 19-390 (400)
6 1xti_A Probable ATP-dependent 100.0 4.4E-53 1.5E-57 457.5 37.4 371 198-650 8-382 (391)
7 3fht_A ATP-dependent RNA helic 100.0 1.8E-51 6.3E-56 447.9 38.5 371 191-646 18-400 (412)
8 3pey_A ATP-dependent RNA helic 100.0 3E-51 1E-55 443.3 37.9 358 196-639 3-370 (395)
9 1hv8_A Putative ATP-dependent 100.0 2.5E-50 8.4E-55 431.7 42.1 357 198-644 6-363 (367)
10 1fuu_A Yeast initiation factor 100.0 2.1E-52 7.2E-57 452.5 21.6 374 194-651 17-391 (394)
11 3fmp_B ATP-dependent RNA helic 100.0 2.9E-52 1E-56 463.3 22.7 367 195-646 89-467 (479)
12 3i5x_A ATP-dependent RNA helic 100.0 5.8E-50 2E-54 453.9 40.4 362 205-637 79-460 (563)
13 3sqw_A ATP-dependent RNA helic 100.0 3.9E-50 1.3E-54 455.9 38.2 361 205-636 28-408 (579)
14 2z0m_A 337AA long hypothetical 100.0 1.5E-48 5.1E-53 412.9 36.0 335 205-639 1-335 (337)
15 3fho_A ATP-dependent RNA helic 100.0 6E-49 2E-53 438.3 20.3 369 194-648 115-493 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 4.7E-47 1.6E-51 427.1 33.3 330 202-625 25-374 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 8.5E-47 2.9E-51 421.0 30.8 335 198-625 2-343 (523)
18 3oiy_A Reverse gyrase helicase 100.0 1.6E-46 5.6E-51 409.2 28.0 331 208-639 9-376 (414)
19 2ykg_A Probable ATP-dependent 100.0 1.8E-44 6E-49 419.4 27.0 406 210-625 3-516 (696)
20 4a2p_A RIG-I, retinoic acid in 100.0 4.3E-44 1.5E-48 405.4 27.3 380 217-626 4-509 (556)
21 3tbk_A RIG-I helicase domain; 100.0 5E-43 1.7E-47 396.4 31.7 377 219-625 3-507 (555)
22 3l9o_A ATP-dependent RNA helic 100.0 6E-44 2.1E-48 426.2 25.0 386 197-629 161-601 (1108)
23 1tf5_A Preprotein translocase 100.0 8.4E-43 2.9E-47 392.0 32.1 382 215-627 79-547 (844)
24 2va8_A SSO2462, SKI2-type heli 100.0 1.6E-42 5.3E-47 403.4 32.8 352 198-626 8-409 (715)
25 4a2q_A RIG-I, retinoic acid in 100.0 7.9E-43 2.7E-47 409.6 28.5 381 215-625 243-749 (797)
26 2zj8_A DNA helicase, putative 100.0 2E-42 6.9E-47 402.3 29.5 343 199-626 2-388 (720)
27 2p6r_A Afuhel308 helicase; pro 100.0 1.2E-42 4.2E-47 403.0 21.7 346 199-625 2-388 (702)
28 1wp9_A ATP-dependent RNA helic 100.0 3.3E-41 1.1E-45 374.5 31.9 358 220-626 9-476 (494)
29 4a2w_A RIG-I, retinoic acid in 100.0 7.3E-42 2.5E-46 405.5 26.9 387 215-625 243-749 (936)
30 4ddu_A Reverse gyrase; topoiso 100.0 8.7E-42 3E-46 407.5 26.9 330 209-639 67-503 (1104)
31 2xgj_A ATP-dependent RNA helic 100.0 1.3E-40 4.4E-45 394.3 34.4 366 214-628 81-502 (1010)
32 2fsf_A Preprotein translocase 100.0 2.2E-41 7.6E-46 379.2 25.2 381 216-627 71-585 (853)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 3.9E-41 1.3E-45 402.4 24.1 329 210-640 47-468 (1054)
34 4gl2_A Interferon-induced heli 100.0 3.3E-41 1.1E-45 392.2 21.0 377 219-626 6-519 (699)
35 1nkt_A Preprotein translocase 100.0 1.3E-39 4.3E-44 365.1 30.6 381 216-627 108-619 (922)
36 4a4z_A Antiviral helicase SKI2 100.0 7.2E-39 2.5E-43 379.4 30.7 360 216-623 36-490 (997)
37 1gm5_A RECG; helicase, replica 100.0 1.8E-39 6.3E-44 372.7 22.9 317 207-624 356-696 (780)
38 2whx_A Serine protease/ntpase/ 100.0 6.5E-40 2.2E-44 370.1 13.1 327 203-649 155-504 (618)
39 2jlq_A Serine protease subunit 100.0 4.6E-39 1.6E-43 352.7 18.9 313 217-649 1-337 (451)
40 4f92_B U5 small nuclear ribonu 100.0 3.6E-38 1.2E-42 388.9 26.1 337 217-627 76-475 (1724)
41 2eyq_A TRCF, transcription-rep 100.0 8.6E-37 2.9E-41 366.9 37.4 322 204-625 587-922 (1151)
42 2oca_A DAR protein, ATP-depend 100.0 5.1E-38 1.7E-42 351.6 24.0 334 218-623 111-453 (510)
43 4f92_B U5 small nuclear ribonu 100.0 4.6E-37 1.6E-41 379.1 28.3 341 204-625 910-1308(1724)
44 1yks_A Genome polyprotein [con 100.0 8.9E-39 3E-43 348.9 9.3 292 231-649 4-325 (440)
45 2fwr_A DNA repair protein RAD2 100.0 6.1E-37 2.1E-41 339.4 23.7 346 220-623 93-452 (472)
46 2wv9_A Flavivirin protease NS2 100.0 2.7E-38 9.2E-43 359.0 10.5 311 220-649 215-559 (673)
47 3o8b_A HCV NS3 protease/helica 100.0 3.4E-37 1.1E-41 344.4 17.1 279 220-627 217-516 (666)
48 2z83_A Helicase/nucleoside tri 100.0 6.6E-37 2.2E-41 336.2 16.3 273 229-625 15-313 (459)
49 2xau_A PRE-mRNA-splicing facto 100.0 2.9E-36 1E-40 348.6 19.9 333 194-624 68-442 (773)
50 1wrb_A DJVLGB; RNA helicase, D 100.0 3.5E-35 1.2E-39 297.5 22.3 227 178-404 1-230 (253)
51 3fe2_A Probable ATP-dependent 100.0 3.4E-34 1.2E-38 288.1 25.0 214 184-404 15-228 (242)
52 2v6i_A RNA helicase; membrane, 100.0 3.2E-35 1.1E-39 320.2 18.5 271 234-623 1-289 (431)
53 3h1t_A Type I site-specific re 100.0 1.7E-34 5.9E-39 328.4 20.7 343 219-623 177-556 (590)
54 3dmq_A RNA polymerase-associat 100.0 1.1E-34 3.9E-39 344.2 18.9 400 219-641 152-628 (968)
55 1z63_A Helicase of the SNF2/RA 100.0 2.1E-33 7.3E-38 313.3 26.1 388 219-650 36-475 (500)
56 3iuy_A Probable ATP-dependent 100.0 1.3E-32 4.6E-37 273.9 21.7 208 190-404 11-219 (228)
57 3rc3_A ATP-dependent RNA helic 100.0 2E-32 6.9E-37 309.7 25.3 280 225-623 145-443 (677)
58 1z3i_X Similar to RAD54-like; 100.0 3.6E-31 1.2E-35 302.3 33.6 383 220-621 55-522 (644)
59 3mwy_W Chromo domain-containin 100.0 7.1E-32 2.4E-36 315.8 27.7 403 219-650 235-706 (800)
60 2oxc_A Probable ATP-dependent 100.0 6.1E-32 2.1E-36 269.4 23.0 203 189-404 15-219 (230)
61 3fmo_B ATP-dependent RNA helic 100.0 5.9E-32 2E-36 279.9 22.8 196 194-404 88-288 (300)
62 3bor_A Human initiation factor 100.0 3.2E-32 1.1E-36 272.7 19.8 202 191-404 23-225 (237)
63 3ber_A Probable ATP-dependent 100.0 8.1E-32 2.8E-36 271.6 22.8 199 194-404 39-238 (249)
64 1vec_A ATP-dependent RNA helic 100.0 1.5E-31 5E-36 262.0 23.1 195 198-404 3-198 (206)
65 1q0u_A Bstdead; DEAD protein, 100.0 4E-32 1.4E-36 268.7 18.8 196 197-404 3-202 (219)
66 2pl3_A Probable ATP-dependent 100.0 3.9E-31 1.3E-35 264.8 24.3 202 194-404 21-223 (236)
67 3ly5_A ATP-dependent RNA helic 100.0 1.9E-31 6.5E-36 271.0 21.5 199 198-404 52-253 (262)
68 1qde_A EIF4A, translation init 100.0 2.3E-31 7.7E-36 264.3 21.6 200 192-404 8-207 (224)
69 2gxq_A Heat resistant RNA depe 100.0 4.4E-31 1.5E-35 258.7 23.3 195 199-404 2-196 (207)
70 3dkp_A Probable ATP-dependent 100.0 9.2E-32 3.1E-36 271.0 17.6 210 185-404 12-231 (245)
71 3jux_A Protein translocase sub 100.0 3.2E-30 1.1E-34 282.9 31.1 372 217-627 73-589 (822)
72 1t6n_A Probable ATP-dependent 100.0 1.1E-30 3.8E-35 258.5 22.0 198 195-404 11-211 (220)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.5E-29 5.3E-34 297.7 24.7 336 220-623 271-707 (1038)
74 2p6n_A ATP-dependent RNA helic 100.0 3.6E-29 1.2E-33 240.8 19.6 179 476-655 13-191 (191)
75 2jgn_A DBX, DDX3, ATP-dependen 100.0 1.3E-27 4.3E-32 229.0 18.0 166 488-654 15-181 (185)
76 2ipc_A Preprotein translocase 99.9 8E-26 2.7E-30 252.6 30.8 130 216-361 76-215 (997)
77 1c4o_A DNA nucleotide excision 99.9 6.3E-26 2.1E-30 258.6 29.5 121 504-625 423-550 (664)
78 1t5i_A C_terminal domain of A 99.9 2.6E-27 8.8E-32 224.3 14.6 161 491-651 4-164 (172)
79 2hjv_A ATP-dependent RNA helic 99.9 2.1E-26 7.3E-31 216.2 18.0 152 488-640 5-156 (163)
80 1fuk_A Eukaryotic initiation f 99.9 2.8E-26 9.5E-31 215.9 16.5 159 492-651 3-162 (165)
81 2d7d_A Uvrabc system protein B 99.9 6.4E-25 2.2E-29 250.2 28.9 122 504-626 429-557 (661)
82 2rb4_A ATP-dependent RNA helic 99.9 1.6E-25 5.6E-30 212.8 17.3 154 490-644 5-165 (175)
83 3eaq_A Heat resistant RNA depe 99.9 4.8E-25 1.6E-29 216.1 16.4 146 494-640 7-152 (212)
84 3i32_A Heat resistant RNA depe 99.9 2.4E-24 8.3E-29 221.0 17.0 143 493-636 3-145 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 2.3E-25 7.7E-30 210.7 0.0 148 493-641 4-152 (170)
86 3b6e_A Interferon-induced heli 99.9 1.3E-23 4.4E-28 206.7 8.9 172 215-392 28-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 2.5E-21 8.7E-26 216.3 17.3 103 516-624 382-520 (540)
88 1rif_A DAR protein, DNA helica 99.8 9.7E-21 3.3E-25 194.4 12.6 155 219-397 112-266 (282)
89 3crv_A XPD/RAD3 related DNA he 99.8 9.1E-19 3.1E-23 196.4 29.7 129 220-362 3-187 (551)
90 3llm_A ATP-dependent RNA helic 99.8 6.2E-21 2.1E-25 190.2 10.7 173 206-397 47-222 (235)
91 1z5z_A Helicase of the SNF2/RA 99.8 8.8E-19 3E-23 177.5 13.5 138 501-641 93-237 (271)
92 2fz4_A DNA repair protein RAD2 99.8 3.6E-18 1.2E-22 170.0 14.3 139 219-396 92-231 (237)
93 4a15_A XPD helicase, ATP-depen 99.7 2.8E-16 9.6E-21 177.5 23.3 103 517-623 447-582 (620)
94 2k1p_A Zinc finger RAN-binding 98.8 1.9E-09 6.5E-14 69.5 3.1 31 102-132 1-32 (33)
95 2lk0_A RNA-binding protein 5; 98.8 2.3E-09 8E-14 68.5 1.8 30 103-132 1-31 (32)
96 1n0z_A ZNF265; zinc finger, RN 98.7 1.5E-08 5.3E-13 70.2 4.3 34 100-133 7-43 (45)
97 1w36_D RECD, exodeoxyribonucle 98.6 6E-08 2E-12 109.4 8.5 144 222-390 151-296 (608)
98 2gk6_A Regulator of nonsense t 98.1 2.7E-05 9.2E-10 88.1 14.0 70 218-297 178-247 (624)
99 2xzl_A ATP-dependent helicase 97.9 3.8E-05 1.3E-09 88.9 12.2 71 217-297 357-427 (802)
100 2wjy_A Regulator of nonsense t 97.9 5.9E-05 2E-09 87.2 13.7 71 217-297 353-423 (800)
101 4b3f_X DNA-binding protein smu 97.9 2.7E-05 9.2E-10 88.7 10.6 68 219-297 188-256 (646)
102 3e1s_A Exodeoxyribonuclease V, 97.9 7.1E-05 2.4E-09 83.4 12.7 64 220-294 189-252 (574)
103 3hgt_A HDA1 complex subunit 3; 97.8 0.00011 3.7E-09 74.4 12.2 118 503-625 108-237 (328)
104 3upu_A ATP-dependent DNA helic 97.8 3.7E-05 1.3E-09 83.7 8.2 70 215-294 20-94 (459)
105 2o0j_A Terminase, DNA packagin 97.0 0.0029 1E-07 66.3 11.2 70 220-298 163-232 (385)
106 3cpe_A Terminase, DNA packagin 96.5 0.014 4.9E-07 65.3 12.9 72 220-300 163-234 (592)
107 3gj8_B Nuclear pore complex pr 96.5 0.00045 1.5E-08 56.4 0.0 32 103-134 4-36 (92)
108 2ebq_A Nuclear pore complex pr 96.2 0.0038 1.3E-07 43.1 3.4 36 99-134 3-39 (47)
109 3lfu_A DNA helicase II; SF1 he 96.2 0.01 3.6E-07 67.3 9.3 71 219-298 8-78 (647)
110 3vkw_A Replicase large subunit 96.0 0.0097 3.3E-07 63.1 6.9 86 235-360 161-246 (446)
111 2orw_A Thymidine kinase; TMTK, 95.8 0.0044 1.5E-07 58.1 3.2 39 234-283 2-40 (184)
112 3ec2_A DNA replication protein 95.7 0.021 7E-07 53.0 7.4 26 234-260 37-62 (180)
113 3gj8_B Nuclear pore complex pr 95.6 0.0042 1.4E-07 50.6 1.9 30 103-132 61-91 (92)
114 3u4q_A ATP-dependent helicase/ 95.6 0.027 9.2E-07 68.7 9.6 108 219-339 9-116 (1232)
115 2j9r_A Thymidine kinase; TK1, 95.4 0.022 7.4E-07 54.2 6.3 39 235-284 28-66 (214)
116 1pjr_A PCRA; DNA repair, DNA r 95.3 0.036 1.2E-06 63.6 9.2 71 219-298 10-80 (724)
117 1uaa_A REP helicase, protein ( 95.3 0.022 7.7E-07 64.9 7.4 70 220-298 2-71 (673)
118 1xx6_A Thymidine kinase; NESG, 95.3 0.018 6.2E-07 54.1 5.5 39 234-283 7-45 (191)
119 1l8q_A Chromosomal replication 94.7 0.088 3E-06 53.9 9.3 27 235-262 37-63 (324)
120 2zpa_A Uncharacterized protein 94.7 0.069 2.4E-06 59.6 8.9 113 220-394 175-289 (671)
121 2orv_A Thymidine kinase; TP4A 94.7 0.082 2.8E-06 50.7 8.1 40 234-284 18-57 (234)
122 1a5t_A Delta prime, HOLB; zinc 94.7 0.14 4.8E-06 52.7 10.6 41 221-262 3-50 (334)
123 2b8t_A Thymidine kinase; deoxy 94.7 0.018 6E-07 55.5 3.5 91 234-360 11-101 (223)
124 3gj5_B Nuclear pore complex pr 94.6 0.014 4.9E-07 37.3 1.8 30 103-132 3-33 (34)
125 1w4r_A Thymidine kinase; type 94.6 0.1 3.4E-06 48.8 8.2 39 234-283 19-57 (195)
126 2kjq_A DNAA-related protein; s 94.4 0.019 6.5E-07 51.6 2.9 18 234-251 35-52 (149)
127 2ebr_A Nuclear pore complex pr 94.3 0.056 1.9E-06 37.4 4.3 31 104-134 8-39 (47)
128 3te6_A Regulatory protein SIR3 94.2 0.058 2E-06 54.9 6.3 28 234-262 44-71 (318)
129 1d2n_A N-ethylmaleimide-sensit 94.0 0.35 1.2E-05 47.9 11.7 17 236-252 65-81 (272)
130 2v1u_A Cell division control p 93.7 0.27 9.2E-06 51.2 10.7 26 234-260 43-68 (387)
131 3gj3_B Nuclear pore complex pr 93.6 0.032 1.1E-06 35.5 1.9 29 104-132 4-33 (33)
132 3e2i_A Thymidine kinase; Zn-bi 93.4 0.062 2.1E-06 51.0 4.4 40 234-284 27-66 (219)
133 2z4s_A Chromosomal replication 93.2 0.18 6.2E-06 54.0 8.4 26 235-261 130-155 (440)
134 2w58_A DNAI, primosome compone 93.0 0.22 7.6E-06 46.7 7.9 25 236-261 55-79 (202)
135 3h4m_A Proteasome-activating n 93.0 0.058 2E-06 54.0 3.8 51 198-251 14-67 (285)
136 2qby_B CDC6 homolog 3, cell di 92.9 0.27 9.3E-06 51.3 9.1 25 235-260 45-69 (384)
137 2chg_A Replication factor C sm 92.7 0.65 2.2E-05 43.7 10.8 16 236-251 39-54 (226)
138 1jbk_A CLPB protein; beta barr 92.7 0.86 2.9E-05 41.6 11.4 27 235-262 43-69 (195)
139 2d9g_A YY1-associated factor 2 92.5 0.2 6.9E-06 35.7 5.0 31 103-133 7-38 (53)
140 2p65_A Hypothetical protein PF 92.5 0.83 2.8E-05 41.6 10.9 26 235-261 43-68 (187)
141 3bos_A Putative DNA replicatio 92.2 0.2 6.7E-06 48.3 6.3 26 234-260 51-76 (242)
142 1gm5_A RECG; helicase, replica 92.0 0.32 1.1E-05 55.8 8.7 76 517-592 416-496 (780)
143 3kl4_A SRP54, signal recogniti 91.5 0.57 2E-05 49.6 9.4 47 347-397 178-227 (433)
144 3u61_B DNA polymerase accessor 91.1 0.85 2.9E-05 46.3 10.1 28 347-374 104-131 (324)
145 1g5t_A COB(I)alamin adenosyltr 91.1 0.93 3.2E-05 42.3 9.3 54 347-404 119-174 (196)
146 1xwi_A SKD1 protein; VPS4B, AA 91.0 0.88 3E-05 46.3 10.0 50 198-251 9-61 (322)
147 2qz4_A Paraplegin; AAA+, SPG7, 90.9 1.4 4.8E-05 42.9 11.2 18 234-251 38-55 (262)
148 1fnn_A CDC6P, cell division co 90.8 0.64 2.2E-05 48.4 9.0 23 237-260 46-68 (389)
149 3eie_A Vacuolar protein sortin 90.6 0.29 9.9E-06 49.9 5.9 51 198-251 15-67 (322)
150 2qby_A CDC6 homolog 1, cell di 90.2 0.91 3.1E-05 47.0 9.6 25 235-260 45-69 (386)
151 2ebv_A Nuclear pore complex pr 90.2 0.41 1.4E-05 34.5 4.6 31 102-132 26-57 (57)
152 3pfi_A Holliday junction ATP-d 90.2 2.5 8.4E-05 43.0 12.7 16 236-251 56-71 (338)
153 2gno_A DNA polymerase III, gam 89.9 1.1 3.6E-05 45.3 9.3 28 346-374 80-107 (305)
154 1sxj_E Activator 1 40 kDa subu 89.7 1.9 6.4E-05 44.2 11.4 41 347-392 133-173 (354)
155 3oiy_A Reverse gyrase helicase 89.3 0.81 2.8E-05 48.3 8.4 77 516-592 62-145 (414)
156 2zan_A Vacuolar protein sortin 88.9 1.3 4.5E-05 47.2 9.7 51 197-251 130-183 (444)
157 1iqp_A RFCS; clamp loader, ext 88.1 2.1 7.1E-05 43.2 10.2 15 237-251 48-62 (327)
158 2hjv_A ATP-dependent RNA helic 87.9 1.9 6.4E-05 38.8 8.7 72 276-357 37-112 (163)
159 2dr3_A UPF0273 protein PH0284; 87.8 1.1 3.7E-05 43.2 7.6 53 233-297 21-73 (247)
160 2db3_A ATP-dependent RNA helic 87.7 3.6 0.00012 43.6 12.3 199 403-623 181-402 (434)
161 2rb4_A ATP-dependent RNA helic 86.7 3.3 0.00011 37.6 9.7 70 275-354 35-108 (175)
162 2p6n_A ATP-dependent RNA helic 86.7 4.8 0.00016 37.2 11.0 71 276-356 56-130 (191)
163 1njg_A DNA polymerase III subu 86.4 3.7 0.00013 38.8 10.5 25 236-261 46-70 (250)
164 1sxj_D Activator 1 41 kDa subu 85.7 1.3 4.4E-05 45.4 7.1 16 236-251 59-74 (353)
165 2z43_A DNA repair and recombin 85.6 2.1 7.1E-05 43.5 8.5 59 234-297 106-165 (324)
166 1fuk_A Eukaryotic initiation f 85.1 3.5 0.00012 37.0 9.0 72 275-356 31-106 (165)
167 3vfd_A Spastin; ATPase, microt 84.6 0.56 1.9E-05 49.2 3.8 53 197-252 111-165 (389)
168 3hjh_A Transcription-repair-co 84.3 3 0.0001 44.9 9.3 76 506-594 371-446 (483)
169 1t5i_A C_terminal domain of A 84.2 2.8 9.6E-05 38.0 7.9 72 275-356 32-107 (172)
170 3pvs_A Replication-associated 84.1 1.4 4.9E-05 47.0 6.7 16 236-251 51-66 (447)
171 3gj7_B Nuclear pore complex pr 84.1 0.42 1.4E-05 39.0 1.9 31 102-132 67-98 (98)
172 1nj3_A NPL4; NZF domain, rubre 83.9 0.78 2.7E-05 28.6 2.7 25 106-130 5-30 (31)
173 2l8b_A Protein TRAI, DNA helic 83.5 0.8 2.7E-05 41.9 3.7 59 222-290 36-96 (189)
174 4ddu_A Reverse gyrase; topoiso 83.3 3.1 0.0001 49.8 9.7 76 516-592 119-202 (1104)
175 2crc_A Ubiquitin conjugating e 82.8 1.5 5.1E-05 31.0 4.0 28 106-133 9-37 (52)
176 2eyq_A TRCF, transcription-rep 82.7 2.8 9.7E-05 50.4 9.2 77 516-592 650-731 (1151)
177 2r6a_A DNAB helicase, replicat 82.5 3.2 0.00011 44.3 8.8 27 232-258 200-226 (454)
178 2jgn_A DBX, DDX3, ATP-dependen 82.3 4.7 0.00016 37.0 8.7 71 275-355 47-121 (185)
179 1t6n_A Probable ATP-dependent 82.2 6.1 0.00021 37.1 9.8 72 518-592 82-164 (220)
180 3m6a_A ATP-dependent protease 82.0 2.2 7.4E-05 46.9 7.3 18 234-251 107-124 (543)
181 1hqc_A RUVB; extended AAA-ATPa 82.0 1.6 5.4E-05 44.1 5.8 17 235-251 38-54 (324)
182 3eaq_A Heat resistant RNA depe 81.4 5.2 0.00018 37.6 8.9 69 276-354 33-105 (212)
183 1w5s_A Origin recognition comp 81.4 1.5 5.1E-05 46.0 5.6 25 235-260 50-76 (412)
184 3co5_A Putative two-component 81.2 1.1 3.7E-05 39.4 3.7 20 232-251 24-43 (143)
185 1sxj_B Activator 1 37 kDa subu 81.2 2.8 9.6E-05 42.1 7.4 15 237-251 44-58 (323)
186 2fna_A Conserved hypothetical 81.1 25 0.00085 35.3 14.7 23 236-259 31-53 (357)
187 3dm5_A SRP54, signal recogniti 80.9 3.6 0.00012 43.6 8.1 25 236-261 101-125 (443)
188 3n70_A Transport activator; si 80.8 1.2 4.2E-05 39.1 3.9 19 233-251 22-40 (145)
189 1v5w_A DMC1, meiotic recombina 80.4 4.2 0.00014 41.6 8.4 59 234-297 121-180 (343)
190 1n0w_A DNA repair protein RAD5 80.3 7 0.00024 37.2 9.6 22 233-254 22-43 (243)
191 3ber_A Probable ATP-dependent 80.0 8.4 0.00029 37.2 10.1 73 516-592 109-192 (249)
192 1oyw_A RECQ helicase, ATP-depe 79.9 3.6 0.00012 44.9 8.0 59 518-576 65-123 (523)
193 1jr3_A DNA polymerase III subu 79.6 11 0.00036 38.7 11.4 23 237-260 40-62 (373)
194 4b4t_M 26S protease regulatory 79.6 1.4 4.9E-05 46.6 4.5 54 195-251 175-231 (434)
195 3a9j_C Mitogen-activated prote 78.8 1.2 3.9E-05 28.5 2.2 26 106-131 7-33 (34)
196 2i1q_A DNA repair and recombin 78.8 3.3 0.00011 41.9 6.9 64 234-297 97-166 (322)
197 2c6a_A Ubiquitin-protein ligas 78.7 1.1 3.6E-05 30.4 2.0 26 106-131 12-38 (46)
198 2zr9_A Protein RECA, recombina 78.5 1.6 5.5E-05 44.9 4.4 24 233-256 59-82 (349)
199 2v1x_A ATP-dependent DNA helic 77.7 3.4 0.00012 45.8 7.1 59 518-576 84-144 (591)
200 3cmu_A Protein RECA, recombina 77.3 2.1 7.3E-05 53.7 5.7 41 234-285 1426-1466(2050)
201 2oxc_A Probable ATP-dependent 76.8 5.5 0.00019 37.8 7.6 72 516-592 90-172 (230)
202 3fe2_A Probable ATP-dependent 76.8 7.9 0.00027 37.0 8.7 72 517-592 101-182 (242)
203 4a1f_A DNAB helicase, replicat 76.6 3.8 0.00013 41.8 6.5 50 233-294 44-93 (338)
204 3io5_A Recombination and repai 76.4 6.3 0.00022 39.6 7.9 92 234-361 28-124 (333)
205 2q6t_A DNAB replication FORK h 76.3 7.1 0.00024 41.5 8.9 117 233-362 198-324 (444)
206 3jvv_A Twitching mobility prot 76.1 3.3 0.00011 42.7 6.0 26 234-260 122-147 (356)
207 1e9r_A Conjugal transfer prote 76.1 2.7 9.1E-05 44.7 5.5 44 234-288 52-95 (437)
208 1qvr_A CLPB protein; coiled co 76.0 6.2 0.00021 45.9 9.0 26 235-261 191-216 (854)
209 3hr8_A Protein RECA; alpha and 75.3 2.5 8.4E-05 43.5 4.7 42 234-286 60-101 (356)
210 2eyu_A Twitching motility prot 74.6 2.9 0.0001 40.9 4.9 20 232-251 22-41 (261)
211 4dpv_Z Protein (parvovirus coa 74.3 0.84 2.9E-05 47.5 0.9 38 73-110 9-47 (584)
212 2oap_1 GSPE-2, type II secreti 74.0 2.5 8.6E-05 45.9 4.7 29 223-251 247-276 (511)
213 4a74_A DNA repair and recombin 73.6 14 0.00048 34.6 9.5 20 232-251 22-41 (231)
214 1xp8_A RECA protein, recombina 73.5 3.4 0.00012 42.7 5.3 39 234-283 73-111 (366)
215 1wrb_A DJVLGB; RNA helicase, D 72.9 3.1 0.00011 40.2 4.7 71 404-474 153-223 (253)
216 3b85_A Phosphate starvation-in 72.9 3.5 0.00012 38.8 4.9 32 220-251 7-38 (208)
217 2qgz_A Helicase loader, putati 72.9 4.8 0.00016 40.5 6.1 26 235-261 152-177 (308)
218 3pxi_A Negative regulator of g 71.8 2.4 8.1E-05 48.7 4.0 104 237-396 523-632 (758)
219 3i32_A Heat resistant RNA depe 71.7 9.7 0.00033 38.0 8.1 69 276-354 30-102 (300)
220 2i4i_A ATP-dependent RNA helic 71.7 23 0.0008 36.6 11.6 71 274-354 276-350 (417)
221 1vec_A ATP-dependent RNA helic 70.5 13 0.00045 34.2 8.4 72 517-592 70-152 (206)
222 1p9r_A General secretion pathw 70.4 5.4 0.00018 42.0 6.0 26 234-260 166-191 (418)
223 2gxq_A Heat resistant RNA depe 70.4 13 0.00046 34.1 8.4 72 517-592 71-150 (207)
224 3i5x_A ATP-dependent RNA helic 70.0 35 0.0012 37.1 12.9 77 274-357 339-419 (563)
225 3iuy_A Probable ATP-dependent 69.7 11 0.00038 35.5 7.8 72 517-592 93-173 (228)
226 3bor_A Human initiation factor 69.7 8.2 0.00028 36.8 6.9 73 517-592 97-179 (237)
227 4b4t_J 26S protease regulatory 69.4 3.3 0.00011 43.2 4.1 53 196-251 143-198 (405)
228 2zts_A Putative uncharacterize 69.0 4.3 0.00015 38.9 4.7 53 234-297 29-81 (251)
229 1xti_A Probable ATP-dependent 68.7 14 0.00049 37.8 9.1 73 517-592 75-158 (391)
230 1k3v_A Capsid protein VP2; ico 67.6 1.5 5.3E-05 47.0 1.1 26 85-110 23-48 (579)
231 3b08_B Ranbp-type and C3HC4-ty 67.5 2.6 8.9E-05 31.1 2.0 28 106-133 7-35 (64)
232 1hv8_A Putative ATP-dependent 67.2 17 0.0006 36.6 9.2 72 275-356 239-314 (367)
233 3syl_A Protein CBBX; photosynt 66.4 7 0.00024 38.9 5.8 25 235-260 67-91 (309)
234 3sqw_A ATP-dependent RNA helic 66.1 46 0.0016 36.4 12.9 77 274-357 288-368 (579)
235 3cf0_A Transitional endoplasmi 65.4 2.8 9.5E-05 42.0 2.5 51 198-251 12-65 (301)
236 3ly5_A ATP-dependent RNA helic 64.8 30 0.001 33.4 9.9 72 517-592 125-207 (262)
237 3pey_A ATP-dependent RNA helic 64.8 32 0.0011 35.0 10.8 75 274-358 243-321 (395)
238 4ag6_A VIRB4 ATPase, type IV s 64.4 6.6 0.00023 40.9 5.3 43 233-286 33-75 (392)
239 2gza_A Type IV secretion syste 64.0 3.5 0.00012 42.6 2.9 28 231-260 171-198 (361)
240 2d7d_A Uvrabc system protein B 63.8 41 0.0014 37.6 12.0 77 274-360 445-525 (661)
241 1wp9_A ATP-dependent RNA helic 63.7 19 0.00066 37.8 9.1 96 244-358 340-447 (494)
242 1dsq_A Nucleic acid binding pr 63.6 4.7 0.00016 23.8 2.2 17 121-137 3-19 (26)
243 3uk6_A RUVB-like 2; hexameric 63.3 9.9 0.00034 38.9 6.4 25 235-260 70-94 (368)
244 3fht_A ATP-dependent RNA helic 63.0 23 0.00078 36.5 9.3 71 275-355 267-341 (412)
245 4b4t_H 26S protease regulatory 62.8 10 0.00036 40.1 6.3 54 195-251 203-259 (467)
246 2l82_A Designed protein OR32; 62.0 33 0.0011 27.7 7.6 50 521-570 5-54 (162)
247 1kgd_A CASK, peripheral plasma 61.6 5 0.00017 36.5 3.3 18 234-251 4-21 (180)
248 2yjt_D ATP-dependent RNA helic 65.6 1.7 5.8E-05 39.4 0.0 71 275-355 31-105 (170)
249 4b4t_L 26S protease subunit RP 61.4 3.7 0.00013 43.4 2.6 53 196-251 176-231 (437)
250 2bjv_A PSP operon transcriptio 61.3 5.7 0.0002 38.6 3.9 18 234-251 28-45 (265)
251 1lvg_A Guanylate kinase, GMP k 60.9 5.7 0.0002 36.8 3.6 26 234-261 3-28 (198)
252 1qde_A EIF4A, translation init 60.6 11 0.00036 35.5 5.6 72 516-592 80-161 (224)
253 2cr8_A MDM4 protein; ZF-ranbp 60.5 8.7 0.0003 26.5 3.3 27 105-131 9-36 (53)
254 1a6b_B Momulv, zinc finger pro 60.1 15 0.00053 24.2 4.5 20 119-138 9-28 (40)
255 4b4t_I 26S protease regulatory 60.0 6.9 0.00024 41.1 4.3 53 196-251 177-232 (437)
256 1ixz_A ATP-dependent metallopr 60.0 6 0.00021 38.2 3.8 50 197-251 12-65 (254)
257 1zu4_A FTSY; GTPase, signal re 59.8 30 0.001 34.7 9.0 17 235-251 105-121 (320)
258 3iij_A Coilin-interacting nucl 59.5 7 0.00024 35.3 3.9 19 233-251 9-27 (180)
259 2pl3_A Probable ATP-dependent 59.0 23 0.0008 33.3 7.8 71 517-592 96-177 (236)
260 1w36_B RECB, exodeoxyribonucle 58.9 16 0.00053 44.2 7.8 61 237-297 18-79 (1180)
261 4b4t_K 26S protease regulatory 58.9 4.7 0.00016 42.5 2.8 53 196-251 167-222 (428)
262 1s2m_A Putative ATP-dependent 58.4 31 0.0011 35.4 9.3 72 275-356 259-334 (400)
263 1ofh_A ATP-dependent HSL prote 57.9 17 0.00059 35.8 6.9 17 235-251 50-66 (310)
264 1u0j_A DNA replication protein 57.8 15 0.00052 35.8 6.1 44 207-253 73-122 (267)
265 2j0s_A ATP-dependent RNA helic 57.6 32 0.0011 35.5 9.2 70 276-355 278-351 (410)
266 2ewv_A Twitching motility prot 57.6 5.5 0.00019 41.3 3.1 20 232-251 133-152 (372)
267 2v6i_A RNA helicase; membrane, 57.4 15 0.0005 38.8 6.5 53 276-332 173-225 (431)
268 2w0m_A SSO2452; RECA, SSPF, un 57.4 12 0.00041 35.1 5.4 20 232-251 20-39 (235)
269 2pt7_A CAG-ALFA; ATPase, prote 57.4 4.1 0.00014 41.5 2.0 27 232-260 168-194 (330)
270 3nwn_A Kinesin-like protein KI 57.0 6.1 0.00021 40.5 3.3 25 228-252 96-122 (359)
271 3bh0_A DNAB-like replicative h 57.0 18 0.00061 36.3 6.8 53 232-296 65-117 (315)
272 3hws_A ATP-dependent CLP prote 56.6 7.3 0.00025 40.0 3.9 18 234-251 50-67 (363)
273 2x8a_A Nuclear valosin-contain 56.3 3.5 0.00012 40.7 1.3 52 197-251 6-60 (274)
274 3nbx_X ATPase RAVA; AAA+ ATPas 56.1 5.1 0.00017 43.3 2.6 26 226-251 32-57 (500)
275 2ffh_A Protein (FFH); SRP54, s 56.1 36 0.0012 35.7 9.1 17 235-251 98-114 (425)
276 3vaa_A Shikimate kinase, SK; s 55.8 7.8 0.00027 35.8 3.6 18 234-251 24-41 (199)
277 1z6g_A Guanylate kinase; struc 55.1 8.1 0.00028 36.4 3.6 28 232-261 20-47 (218)
278 1gku_B Reverse gyrase, TOP-RG; 54.8 20 0.00067 42.7 7.6 74 517-592 98-181 (1054)
279 1f9v_A Kinesin-like protein KA 54.7 8.3 0.00028 39.4 3.8 25 228-252 76-102 (347)
280 1q0u_A Bstdead; DEAD protein, 54.6 11 0.00037 35.3 4.4 67 404-474 129-195 (219)
281 1ojl_A Transcriptional regulat 54.4 8 0.00027 38.7 3.6 18 234-251 24-41 (304)
282 1iy2_A ATP-dependent metallopr 54.3 8.4 0.00029 37.8 3.8 16 236-251 74-89 (278)
283 1qhx_A CPT, protein (chloramph 54.2 6 0.00021 35.6 2.5 17 235-251 3-19 (178)
284 3tr0_A Guanylate kinase, GMP k 54.0 8.2 0.00028 35.6 3.4 18 234-251 6-23 (205)
285 2r44_A Uncharacterized protein 53.9 4.6 0.00016 40.9 1.7 22 230-251 41-62 (331)
286 2qmh_A HPR kinase/phosphorylas 53.9 6.9 0.00023 36.5 2.7 18 234-251 33-50 (205)
287 3ng9_A Capsid protein; beta ba 53.9 4.3 0.00015 44.7 1.5 11 100-110 220-230 (736)
288 2c9o_A RUVB-like 1; hexameric 53.9 17 0.0006 38.5 6.4 19 234-252 62-80 (456)
289 1bg2_A Kinesin; motor protein, 53.8 7.7 0.00026 39.2 3.3 24 229-252 70-95 (325)
290 2j41_A Guanylate kinase; GMP, 53.8 7.4 0.00025 36.0 3.1 19 233-251 4-22 (207)
291 1cl4_A Protein (GAG polyprotei 53.7 12 0.00043 27.0 3.6 34 104-137 9-47 (60)
292 1vma_A Cell division protein F 53.6 19 0.00066 35.9 6.3 17 235-251 104-120 (306)
293 3exa_A TRNA delta(2)-isopenten 53.5 6.3 0.00021 39.6 2.6 16 236-251 4-19 (322)
294 3a8t_A Adenylate isopentenyltr 53.4 6.7 0.00023 39.8 2.8 16 236-251 41-56 (339)
295 3d8b_A Fidgetin-like protein 1 53.2 25 0.00085 35.9 7.3 52 197-251 80-133 (357)
296 1yks_A Genome polyprotein [con 53.1 16 0.00054 38.7 5.9 68 275-353 178-245 (440)
297 3lda_A DNA repair protein RAD5 53.1 20 0.00069 37.3 6.5 19 235-253 178-196 (400)
298 3t0q_A AGR253WP; kinesin, alph 52.8 8.4 0.00029 39.4 3.5 25 228-252 77-103 (349)
299 3dc4_A Kinesin-like protein NO 52.6 7.3 0.00025 39.7 3.0 24 229-252 87-112 (344)
300 2oca_A DAR protein, ATP-depend 52.5 45 0.0015 35.6 9.6 74 276-358 349-426 (510)
301 3a00_A Guanylate kinase, GMP k 52.3 9.6 0.00033 34.7 3.6 23 236-260 2-24 (186)
302 1zp6_A Hypothetical protein AT 52.2 5.5 0.00019 36.4 1.9 20 232-251 6-25 (191)
303 3ntt_A Capsid protein; gene th 52.2 4.1 0.00014 44.7 1.1 9 102-110 212-220 (724)
304 1znw_A Guanylate kinase, GMP k 52.1 8.9 0.0003 35.7 3.4 28 231-260 16-43 (207)
305 2a51_A Nucleocapsid protein; s 52.1 11 0.00037 24.6 2.8 28 105-135 9-36 (39)
306 1v8k_A Kinesin-like protein KI 52.0 7.9 0.00027 40.4 3.2 24 229-252 147-172 (410)
307 2h58_A Kinesin-like protein KI 51.7 8.7 0.0003 38.9 3.3 25 228-252 72-98 (330)
308 3b6u_A Kinesin-like protein KI 51.6 8.5 0.00029 39.7 3.3 24 229-252 94-119 (372)
309 2vvg_A Kinesin-2; motor protei 51.5 8.7 0.0003 39.2 3.3 23 230-252 83-107 (350)
310 3trf_A Shikimate kinase, SK; a 51.5 10 0.00034 34.4 3.6 18 235-252 5-22 (185)
311 2j37_W Signal recognition part 51.3 45 0.0015 35.8 9.1 25 236-261 102-126 (504)
312 3fmo_B ATP-dependent RNA helic 51.3 15 0.0005 36.6 5.0 68 403-474 212-281 (300)
313 1goj_A Kinesin, kinesin heavy 51.2 9 0.00031 39.3 3.4 24 229-252 73-98 (355)
314 2zfi_A Kinesin-like protein KI 51.2 8.8 0.0003 39.5 3.3 24 229-252 82-107 (366)
315 3foz_A TRNA delta(2)-isopenten 51.1 8.6 0.00029 38.5 3.1 22 237-259 12-33 (316)
316 1fuu_A Yeast initiation factor 51.0 43 0.0015 34.1 8.8 71 517-592 88-168 (394)
317 1kag_A SKI, shikimate kinase I 51.0 11 0.00037 33.7 3.6 17 235-251 4-20 (173)
318 1t5c_A CENP-E protein, centrom 51.0 8.8 0.0003 39.2 3.3 24 229-252 70-95 (349)
319 3b9p_A CG5977-PA, isoform A; A 50.8 6.6 0.00023 38.9 2.3 51 198-251 18-70 (297)
320 2y65_A Kinesin, kinesin heavy 50.8 9 0.00031 39.4 3.3 24 229-252 77-102 (365)
321 2nr8_A Kinesin-like protein KI 50.8 8.9 0.00031 39.3 3.3 25 228-252 95-121 (358)
322 3tau_A Guanylate kinase, GMP k 50.6 9.1 0.00031 35.7 3.2 18 234-251 7-24 (208)
323 3lre_A Kinesin-like protein KI 50.5 9.3 0.00032 39.1 3.4 24 229-252 98-123 (355)
324 4a14_A Kinesin, kinesin-like p 50.5 9.2 0.00031 39.0 3.3 24 229-252 76-101 (344)
325 3t15_A Ribulose bisphosphate c 50.5 9.3 0.00032 37.9 3.3 16 236-251 37-52 (293)
326 2xau_A PRE-mRNA-splicing facto 50.4 51 0.0017 37.6 9.9 74 275-354 304-393 (773)
327 2px0_A Flagellar biosynthesis 50.3 13 0.00044 37.0 4.3 18 234-251 104-121 (296)
328 2ius_A DNA translocase FTSK; n 50.2 21 0.0007 38.5 6.2 24 234-258 166-189 (512)
329 3gbj_A KIF13B protein; kinesin 50.1 9.2 0.00032 39.1 3.3 25 228-252 84-110 (354)
330 3gk5_A Uncharacterized rhodane 50.1 22 0.00076 29.0 5.2 37 516-552 53-89 (108)
331 3lw7_A Adenylate kinase relate 50.1 7.2 0.00025 34.7 2.3 15 237-251 3-17 (179)
332 4etp_A Kinesin-like protein KA 50.0 8.9 0.00031 40.0 3.2 25 228-252 132-158 (403)
333 1x88_A Kinesin-like protein KI 49.8 8.6 0.00029 39.5 3.0 25 228-252 80-106 (359)
334 2qor_A Guanylate kinase; phosp 49.8 8.1 0.00028 35.9 2.6 19 233-251 10-28 (204)
335 1kht_A Adenylate kinase; phosp 49.5 7.6 0.00026 35.3 2.4 17 235-251 3-19 (192)
336 1rj9_A FTSY, signal recognitio 49.5 16 0.00056 36.4 5.0 27 234-262 101-127 (304)
337 3u4q_B ATP-dependent helicase/ 49.3 14 0.00047 44.6 5.2 39 239-285 5-43 (1166)
338 1lv7_A FTSH; alpha/beta domain 49.0 10 0.00035 36.5 3.4 17 235-251 45-61 (257)
339 3bfn_A Kinesin-like protein KI 49.0 9 0.00031 39.7 3.0 23 230-252 92-116 (388)
340 3c8u_A Fructokinase; YP_612366 49.0 9.7 0.00033 35.5 3.1 26 234-261 21-46 (208)
341 1nlf_A Regulatory protein REPA 48.9 38 0.0013 32.9 7.6 25 230-254 25-49 (279)
342 2v9p_A Replication protein E1; 48.9 11 0.00037 37.7 3.5 27 233-261 124-150 (305)
343 2heh_A KIF2C protein; kinesin, 48.9 9.2 0.00031 39.6 3.0 24 229-252 127-152 (387)
344 2wbe_C Bipolar kinesin KRP-130 48.9 9 0.00031 39.5 3.0 24 229-252 93-118 (373)
345 1y63_A LMAJ004144AAA protein; 48.4 8.4 0.00029 35.1 2.5 18 234-251 9-26 (184)
346 3tbk_A RIG-I helicase domain; 48.4 22 0.00074 38.5 6.2 71 518-592 52-133 (555)
347 2ehv_A Hypothetical protein PH 48.2 15 0.00052 34.9 4.5 21 232-252 27-47 (251)
348 1u94_A RECA protein, recombina 47.9 15 0.0005 37.7 4.4 39 234-283 62-100 (356)
349 2qp9_X Vacuolar protein sortin 47.8 12 0.00041 38.3 3.8 17 235-251 84-100 (355)
350 3ney_A 55 kDa erythrocyte memb 47.8 11 0.00038 35.0 3.2 19 233-251 17-35 (197)
351 2ze6_A Isopentenyl transferase 47.8 12 0.00039 36.3 3.5 15 237-251 3-17 (253)
352 1c4o_A DNA nucleotide excision 47.5 95 0.0032 34.6 11.4 76 275-360 440-519 (664)
353 2rep_A Kinesin-like protein KI 47.5 11 0.00036 39.0 3.3 25 228-252 107-133 (376)
354 2r8r_A Sensor protein; KDPD, P 47.5 16 0.00056 34.6 4.3 26 237-263 8-33 (228)
355 3cob_A Kinesin heavy chain-lik 47.4 9 0.00031 39.4 2.7 25 228-252 71-97 (369)
356 2r2a_A Uncharacterized protein 47.4 6.7 0.00023 36.5 1.6 18 237-254 7-24 (199)
357 4a2p_A RIG-I, retinoic acid in 47.2 27 0.00092 37.7 6.8 71 518-592 55-136 (556)
358 2owm_A Nckin3-434, related to 47.1 11 0.00037 39.9 3.3 24 229-252 129-154 (443)
359 4a2q_A RIG-I, retinoic acid in 46.5 34 0.0012 39.2 7.8 71 518-592 296-377 (797)
360 3u06_A Protein claret segregat 46.4 10 0.00036 39.6 3.0 25 228-252 130-156 (412)
361 4eun_A Thermoresistant glucoki 46.4 13 0.00046 34.2 3.6 18 234-251 28-45 (200)
362 1ye8_A Protein THEP1, hypothet 46.3 13 0.00044 33.8 3.3 15 237-251 2-16 (178)
363 1ry6_A Internal kinesin; kines 46.3 10 0.00035 38.9 2.9 19 234-252 82-102 (360)
364 1tue_A Replication protein E1; 46.1 11 0.00037 35.4 2.7 52 206-260 27-82 (212)
365 4gp7_A Metallophosphoesterase; 45.6 8 0.00027 34.8 1.8 20 233-252 7-26 (171)
366 1s96_A Guanylate kinase, GMP k 45.4 13 0.00045 35.1 3.3 19 233-251 14-32 (219)
367 3cf2_A TER ATPase, transitiona 45.3 20 0.00069 40.9 5.4 53 196-251 472-527 (806)
368 3cmw_A Protein RECA, recombina 45.1 16 0.00056 45.3 4.8 91 235-362 1431-1523(1706)
369 1nc8_A Nucleocapsid protein; H 45.0 11 0.00038 22.8 1.8 17 120-136 6-22 (29)
370 2iut_A DNA translocase FTSK; n 44.8 27 0.00092 38.1 6.0 26 235-261 214-239 (574)
371 1knq_A Gluconate kinase; ALFA/ 44.8 13 0.00045 33.2 3.2 18 234-251 7-24 (175)
372 1ex7_A Guanylate kinase; subst 44.7 11 0.00039 34.6 2.7 16 236-251 2-17 (186)
373 1ly1_A Polynucleotide kinase; 44.5 10 0.00034 34.0 2.3 15 237-251 4-18 (181)
374 1um8_A ATP-dependent CLP prote 44.4 14 0.00049 37.9 3.8 17 235-251 72-88 (376)
375 2cvh_A DNA repair and recombin 44.3 13 0.00043 34.7 3.1 21 233-253 18-38 (220)
376 3d3q_A TRNA delta(2)-isopenten 44.1 13 0.00045 37.7 3.3 16 237-252 9-24 (340)
377 3b9q_A Chloroplast SRP recepto 44.1 16 0.00053 36.5 3.8 18 234-251 99-116 (302)
378 1m7g_A Adenylylsulfate kinase; 44.1 15 0.00051 34.2 3.5 29 222-251 13-41 (211)
379 2i3b_A HCR-ntpase, human cance 44.1 16 0.00055 33.5 3.7 29 346-374 103-133 (189)
380 1sxj_C Activator 1 40 kDa subu 43.9 38 0.0013 34.1 6.9 28 347-375 109-136 (340)
381 3crm_A TRNA delta(2)-isopenten 43.9 13 0.00044 37.5 3.1 16 237-252 7-22 (323)
382 3bgw_A DNAB-like replicative h 43.8 19 0.00065 38.1 4.7 51 233-295 195-245 (444)
383 3kb2_A SPBC2 prophage-derived 43.7 10 0.00035 33.6 2.2 15 237-251 3-17 (173)
384 3kta_A Chromosome segregation 43.7 14 0.00049 33.2 3.2 15 237-251 28-42 (182)
385 3eph_A TRNA isopentenyltransfe 43.6 14 0.00047 38.5 3.3 23 237-260 4-26 (409)
386 2qt1_A Nicotinamide riboside k 43.5 10 0.00034 35.2 2.2 23 229-251 15-37 (207)
387 1htw_A HI0065; nucleotide-bind 43.5 14 0.00047 32.9 3.0 27 233-261 31-57 (158)
388 3uie_A Adenylyl-sulfate kinase 43.0 14 0.00049 33.9 3.2 19 233-251 23-41 (200)
389 3dkp_A Probable ATP-dependent 43.0 13 0.00045 35.4 3.0 67 405-474 153-224 (245)
390 1u6p_A GAG polyprotein; MLV, A 42.6 21 0.00071 25.6 3.2 21 118-138 21-41 (56)
391 2chq_A Replication factor C sm 42.6 44 0.0015 32.9 7.0 49 198-260 14-62 (319)
392 2r2a_A Uncharacterized protein 42.6 16 0.00053 34.0 3.3 43 349-392 88-132 (199)
393 2r62_A Cell division protease 42.3 9.4 0.00032 37.0 1.9 17 235-251 44-60 (268)
394 3cm0_A Adenylate kinase; ATP-b 42.1 9 0.00031 34.7 1.6 19 234-252 3-21 (186)
395 1f2t_A RAD50 ABC-ATPase; DNA d 42.0 17 0.00059 31.8 3.4 15 237-251 25-39 (149)
396 3asz_A Uridine kinase; cytidin 41.9 16 0.00053 33.9 3.3 25 234-260 5-29 (211)
397 3tif_A Uncharacterized ABC tra 41.7 13 0.00046 35.4 2.8 26 233-260 29-54 (235)
398 3nwj_A ATSK2; P loop, shikimat 41.4 18 0.00061 35.0 3.6 19 233-251 46-64 (250)
399 3g5j_A Putative ATP/GTP bindin 41.4 30 0.001 29.1 4.8 35 519-553 90-125 (134)
400 1sky_E F1-ATPase, F1-ATP synth 41.2 1.5E+02 0.005 31.4 10.9 23 229-251 145-167 (473)
401 3ts2_A Protein LIN-28 homolog 41.2 11 0.00039 33.1 2.0 30 105-136 106-135 (148)
402 4fcw_A Chaperone protein CLPB; 41.0 16 0.00056 36.1 3.5 16 236-251 48-63 (311)
403 1zuh_A Shikimate kinase; alpha 41.0 12 0.00041 33.2 2.2 17 236-252 8-24 (168)
404 2wv9_A Flavivirin protease NS2 40.9 28 0.00095 39.1 5.6 69 274-353 410-478 (673)
405 1tev_A UMP-CMP kinase; ploop, 40.9 11 0.00038 34.2 2.0 18 235-252 3-20 (196)
406 3f9v_A Minichromosome maintena 40.7 15 0.00051 40.6 3.4 15 237-251 329-343 (595)
407 1cr0_A DNA primase/helicase; R 40.6 29 0.001 34.1 5.3 21 232-252 32-52 (296)
408 3foj_A Uncharacterized protein 40.0 22 0.00074 28.5 3.5 36 517-552 55-90 (100)
409 2lci_A Protein OR36; structura 39.9 1.3E+02 0.0045 23.4 11.1 68 508-575 41-108 (134)
410 1in4_A RUVB, holliday junction 39.8 18 0.00062 36.5 3.6 16 236-251 52-67 (334)
411 3eiq_A Eukaryotic initiation f 39.7 71 0.0024 32.7 8.4 73 517-592 107-189 (414)
412 2cqf_A RNA-binding protein LIN 39.5 47 0.0016 24.2 4.9 31 104-136 15-45 (63)
413 1nij_A Hypothetical protein YJ 39.5 25 0.00084 35.3 4.5 15 237-251 6-20 (318)
414 3lnc_A Guanylate kinase, GMP k 39.5 10 0.00036 35.9 1.6 20 232-251 24-43 (231)
415 3tqc_A Pantothenate kinase; bi 39.1 39 0.0013 33.9 5.9 24 237-262 94-117 (321)
416 2cbz_A Multidrug resistance-as 39.1 15 0.00053 35.0 2.8 26 233-260 29-54 (237)
417 2og2_A Putative signal recogni 39.0 20 0.00069 36.7 3.8 17 235-251 157-173 (359)
418 1xjc_A MOBB protein homolog; s 39.0 23 0.00079 31.9 3.7 25 237-262 6-30 (169)
419 2c95_A Adenylate kinase 1; tra 38.7 15 0.0005 33.5 2.5 18 234-251 8-25 (196)
420 1sxj_A Activator 1 95 kDa subu 38.6 22 0.00077 38.4 4.3 16 236-251 78-93 (516)
421 3ice_A Transcription terminati 38.5 22 0.00076 36.8 3.9 20 232-251 171-190 (422)
422 2rhm_A Putative kinase; P-loop 38.4 13 0.00044 33.7 2.1 17 235-251 5-21 (193)
423 2v54_A DTMP kinase, thymidylat 38.4 14 0.00049 33.9 2.4 18 234-251 3-20 (204)
424 3eme_A Rhodanese-like domain p 38.1 21 0.00072 28.8 3.1 36 517-552 55-90 (103)
425 1sgw_A Putative ABC transporte 38.1 18 0.00061 34.0 3.0 27 232-260 32-58 (214)
426 1via_A Shikimate kinase; struc 38.0 16 0.00053 32.8 2.5 15 237-251 6-20 (175)
427 3t61_A Gluconokinase; PSI-biol 38.0 14 0.00049 34.0 2.3 16 236-251 19-34 (202)
428 2jlq_A Serine protease subunit 37.9 34 0.0012 36.1 5.5 67 276-353 190-256 (451)
429 3e70_C DPA, signal recognition 37.3 23 0.00078 35.8 3.9 18 234-251 128-145 (328)
430 1wv9_A Rhodanese homolog TT165 37.3 26 0.00088 27.6 3.5 35 519-553 54-88 (94)
431 2bdt_A BH3686; alpha-beta prot 37.2 15 0.00052 33.3 2.3 16 236-251 3-18 (189)
432 1g8p_A Magnesium-chelatase 38 37.2 11 0.00036 38.3 1.4 17 235-251 45-61 (350)
433 4akg_A Glutathione S-transfera 36.8 30 0.001 45.2 5.5 48 205-253 890-941 (2695)
434 2cdn_A Adenylate kinase; phosp 36.6 16 0.00054 33.6 2.3 17 235-251 20-36 (201)
435 2pze_A Cystic fibrosis transme 36.5 18 0.0006 34.4 2.7 26 233-260 32-57 (229)
436 1gvn_B Zeta; postsegregational 36.4 15 0.0005 36.4 2.2 17 235-251 33-49 (287)
437 2ghi_A Transport protein; mult 36.3 18 0.00062 35.1 2.8 26 233-260 44-69 (260)
438 2ysa_A Retinoblastoma-binding 36.2 15 0.00052 26.2 1.6 18 120-137 7-24 (55)
439 3vkg_A Dynein heavy chain, cyt 36.1 50 0.0017 43.7 7.4 77 205-290 873-953 (3245)
440 1e6c_A Shikimate kinase; phosp 36.0 18 0.0006 32.2 2.5 16 236-251 3-18 (173)
441 2ihx_A Nucleocapsid (NC) prote 35.9 24 0.00081 25.6 2.7 33 104-136 12-46 (61)
442 2iyv_A Shikimate kinase, SK; t 35.8 19 0.00064 32.5 2.7 17 236-252 3-19 (184)
443 2yhs_A FTSY, cell division pro 35.8 24 0.00081 37.8 3.8 17 235-251 293-309 (503)
444 2ff7_A Alpha-hemolysin translo 35.8 18 0.00062 34.8 2.7 26 233-260 33-58 (247)
445 3ipz_A Monothiol glutaredoxin- 35.7 1.7E+02 0.0058 23.6 8.5 47 517-563 16-68 (109)
446 1nks_A Adenylate kinase; therm 35.7 23 0.0008 31.9 3.4 15 237-251 3-17 (194)
447 2pez_A Bifunctional 3'-phospho 35.6 23 0.00077 31.8 3.2 18 234-251 4-21 (179)
448 2pcj_A ABC transporter, lipopr 35.5 18 0.00063 34.2 2.6 26 233-260 28-53 (224)
449 3gfo_A Cobalt import ATP-bindi 35.5 19 0.00063 35.4 2.7 25 233-259 32-56 (275)
450 4gl2_A Interferon-induced heli 35.3 8.5 0.00029 43.4 0.3 71 518-592 56-142 (699)
451 3pxg_A Negative regulator of g 35.3 26 0.00089 37.3 4.1 27 234-261 200-226 (468)
452 2bwj_A Adenylate kinase 5; pho 35.2 16 0.00054 33.4 2.1 18 234-251 11-28 (199)
453 3hu3_A Transitional endoplasmi 35.1 15 0.00053 39.4 2.2 18 234-251 237-254 (489)
454 2plr_A DTMP kinase, probable t 35.1 16 0.00054 33.7 2.1 18 234-251 3-20 (213)
455 3fb4_A Adenylate kinase; psych 35.0 17 0.00058 33.8 2.3 16 237-252 2-17 (216)
456 1tf5_A Preprotein translocase 34.9 85 0.0029 35.8 8.2 71 516-592 122-209 (844)
457 3iwh_A Rhodanese-like domain p 34.9 26 0.0009 28.4 3.2 36 517-552 55-90 (103)
458 1mv5_A LMRA, multidrug resista 34.7 18 0.0006 34.7 2.4 26 233-260 26-51 (243)
459 1aky_A Adenylate kinase; ATP:A 34.6 18 0.00063 33.8 2.5 18 235-252 4-21 (220)
460 2f1r_A Molybdopterin-guanine d 34.5 13 0.00044 33.6 1.3 15 237-251 4-18 (171)
461 3dl0_A Adenylate kinase; phosp 34.5 16 0.00056 33.9 2.1 16 237-252 2-17 (216)
462 3nh6_A ATP-binding cassette SU 34.3 9.9 0.00034 38.1 0.5 26 233-260 78-103 (306)
463 3k1j_A LON protease, ATP-depen 34.2 26 0.0009 38.7 4.0 29 231-261 56-84 (604)
464 3umf_A Adenylate kinase; rossm 34.1 21 0.00073 33.6 2.8 20 234-253 28-47 (217)
465 1g6h_A High-affinity branched- 34.1 20 0.00068 34.7 2.7 25 232-258 30-54 (257)
466 1qf9_A UMP/CMP kinase, protein 34.0 18 0.00061 32.7 2.3 16 237-252 8-23 (194)
467 4g1u_C Hemin import ATP-bindin 34.0 20 0.00068 35.0 2.7 26 233-260 35-60 (266)
468 2whx_A Serine protease/ntpase/ 33.9 56 0.0019 36.1 6.6 69 274-353 355-423 (618)
469 1z5z_A Helicase of the SNF2/RA 33.9 97 0.0033 30.0 7.7 95 244-357 93-192 (271)
470 1g41_A Heat shock protein HSLU 33.8 18 0.00063 38.1 2.5 17 235-251 50-66 (444)
471 1ji0_A ABC transporter; ATP bi 33.8 21 0.0007 34.2 2.7 26 233-260 30-55 (240)
472 1zd8_A GTP:AMP phosphotransfer 33.8 18 0.00061 34.1 2.2 17 235-251 7-23 (227)
473 1c9k_A COBU, adenosylcobinamid 33.7 29 0.001 31.5 3.6 14 238-251 2-15 (180)
474 2jtq_A Phage shock protein E; 33.7 72 0.0025 24.3 5.5 36 516-552 39-75 (85)
475 1ak2_A Adenylate kinase isoenz 33.7 28 0.00095 32.9 3.6 18 235-252 16-33 (233)
476 2ec7_A GAG polyprotein (PR55GA 33.3 29 0.00099 23.9 2.7 13 121-133 28-40 (49)
477 1vpl_A ABC transporter, ATP-bi 33.2 22 0.00074 34.5 2.8 26 233-260 39-64 (256)
478 2ixe_A Antigen peptide transpo 33.1 22 0.00074 34.8 2.8 27 232-260 42-68 (271)
479 2olj_A Amino acid ABC transpor 33.1 22 0.00075 34.6 2.8 26 233-260 48-73 (263)
480 1cke_A CK, MSSA, protein (cyti 33.1 27 0.00091 32.6 3.4 16 236-251 6-21 (227)
481 1b0u_A Histidine permease; ABC 33.1 22 0.00074 34.6 2.8 26 233-260 30-55 (262)
482 2yvu_A Probable adenylyl-sulfa 33.0 27 0.00091 31.5 3.3 18 234-251 12-29 (186)
483 1zak_A Adenylate kinase; ATP:A 33.0 31 0.0011 32.2 3.8 17 236-252 6-22 (222)
484 2fsf_A Preprotein translocase 32.8 85 0.0029 35.8 7.8 71 516-592 113-200 (853)
485 2zu0_C Probable ATP-dependent 32.7 22 0.00076 34.6 2.8 27 232-260 43-69 (267)
486 3auy_A DNA double-strand break 32.6 25 0.00086 36.1 3.3 16 236-251 26-41 (371)
487 2fz4_A DNA repair protein RAD2 32.5 1.1E+02 0.0037 28.8 7.7 59 504-576 120-179 (237)
488 2qi9_C Vitamin B12 import ATP- 32.5 22 0.00076 34.2 2.7 24 233-258 24-47 (249)
489 3aez_A Pantothenate kinase; tr 32.5 25 0.00084 35.2 3.1 28 233-262 88-115 (312)
490 2d2e_A SUFC protein; ABC-ATPas 32.4 22 0.00076 34.2 2.7 25 233-259 27-51 (250)
491 1q57_A DNA primase/helicase; d 32.4 26 0.0009 37.6 3.6 52 232-294 239-290 (503)
492 2ce7_A Cell division protein F 32.2 19 0.00063 38.6 2.3 16 236-251 50-65 (476)
493 3hix_A ALR3790 protein; rhodan 32.1 37 0.0013 27.4 3.7 36 517-552 51-87 (106)
494 2yz2_A Putative ABC transporte 32.1 23 0.00079 34.5 2.8 26 233-260 31-56 (266)
495 1ukz_A Uridylate kinase; trans 32.1 20 0.0007 32.8 2.3 17 236-252 16-32 (203)
496 2pt5_A Shikimate kinase, SK; a 32.1 21 0.0007 31.5 2.3 15 238-252 3-17 (168)
497 1nkt_A Preprotein translocase 32.0 1.2E+02 0.0041 34.8 8.8 63 508-576 142-208 (922)
498 2ihy_A ABC transporter, ATP-bi 32.0 23 0.00077 34.9 2.7 24 232-257 44-67 (279)
499 2jaq_A Deoxyguanosine kinase; 31.9 30 0.001 31.5 3.4 22 238-260 3-24 (205)
500 3qks_A DNA double-strand break 31.9 29 0.001 32.1 3.4 22 238-261 26-47 (203)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.3e-69 Score=591.87 Aligned_cols=428 Identities=58% Similarity=0.944 Sum_probs=384.0
Q ss_pred CCCCCCCCCCCCCcccccccccCcccccccCCCccceeeecCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhh
Q psy1604 149 PAKPPLYIPKDVDQSEDNLFSSGIQTGINFSGWENVEVKVSGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYA 228 (693)
Q Consensus 149 ~~~~~~y~p~~~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~a 228 (693)
...+.+|+|++++++|.++|+....++++|++++++.+++++.+.|.++.+|++++|++.++++|+++||.+|||+|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~a 86 (434)
T 2db3_A 7 EFPGEFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCS 86 (434)
T ss_dssp ------CCCCCCCCCHHHHTSCCCCCCTTGGGGGGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHH
T ss_pred CCCCCCCcCCCCchhHHHHhhcCcccccChhhhcCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHH
Confidence 35678999999988888999888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEE
Q psy1604 229 IPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLH 308 (693)
Q Consensus 229 i~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~ 308 (693)
++.+++++|++++|+||||||++|++|+++++...+... ...++++|||+|||+|+.|+++.+.++....++++..+
T Consensus 87 i~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~---~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~ 163 (434)
T 2db3_A 87 IPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHEL---ELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIV 163 (434)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCC---CTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEE
T ss_pred HHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhccccc---ccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEE
Confidence 999999999999999999999999999999998765321 13467899999999999999999999998888999999
Q ss_pred eCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEE
Q psy1604 309 YGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLM 388 (693)
Q Consensus 309 ~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~ll 388 (693)
+|+.....+...+..+++|+|+||++|.+++.+..+.+.++++|||||||+|++++|...+..++....++ ..+|+++
T Consensus 164 ~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~--~~~q~l~ 241 (434)
T 2db3_A 164 YGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR--PEHQTLM 241 (434)
T ss_dssp CTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC--SSCEEEE
T ss_pred ECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC--CCceEEE
Confidence 99999888888888899999999999999999888889999999999999999999999999998875433 4789999
Q ss_pred eeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecc
Q psy1604 389 FSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSA 468 (693)
Q Consensus 389 lSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (693)
||||+|..+..++..+
T Consensus 242 ~SAT~~~~~~~~~~~~---------------------------------------------------------------- 257 (434)
T 2db3_A 242 FSATFPEEIQRMAGEF---------------------------------------------------------------- 257 (434)
T ss_dssp EESCCCHHHHHHHHTT----------------------------------------------------------------
T ss_pred EeccCCHHHHHHHHHh----------------------------------------------------------------
Confidence 9999998877665444
Q ss_pred cCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEe
Q psy1604 469 TFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSI 548 (693)
Q Consensus 469 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~l 548 (693)
+ .++..+..+.......++.+.+..+....|...|.+++..... ++||||++++.++.+++.|.+.++.+..+
T Consensus 258 -----l-~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~l 330 (434)
T 2db3_A 258 -----L-KNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSI 330 (434)
T ss_dssp -----C-SSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred -----c-cCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEE
Confidence 1 2444555555555667778888888888999999999987654 49999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCch
Q psy1604 549 HGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDG 628 (693)
Q Consensus 549 hg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~ 628 (693)
||++++.+|++++++|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+||+||.|+.|.|++|++++++.
T Consensus 331 hg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~ 410 (434)
T 2db3_A 331 HGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDR 410 (434)
T ss_dssp STTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCG
T ss_pred eCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred HHHHHHHHHHHHcCCCchhHHhcc
Q psy1604 629 AIAKDLVRILEQAGQPVPEFLKFG 652 (693)
Q Consensus 629 ~~~~~l~~~l~~~~~~vp~~l~~~ 652 (693)
.++.++.+.|..+.+++|+||.++
T Consensus 411 ~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 411 AIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GGHHHHHHHHHHTTCCCCGGGC--
T ss_pred HHHHHHHHHHHHcCCCCCHHHHhC
Confidence 999999999999999999999764
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-58 Score=504.45 Aligned_cols=400 Identities=48% Similarity=0.760 Sum_probs=345.0
Q ss_pred eeecCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCC
Q psy1604 186 VKVSGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPG 265 (693)
Q Consensus 186 v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~ 265 (693)
+.+.+.+.|.++.+|++++|++.+.++|...||..|+|+|.++++.+++++++++++|||||||++|++|+++.+...+.
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999998876432
Q ss_pred C----------cccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH
Q psy1604 266 E----------LVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL 335 (693)
Q Consensus 266 ~----------~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L 335 (693)
. ........+++||++||++|+.|+++.+.++....++++..++|+.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 000112346899999999999999999999998888999999999988888888888899999999999
Q ss_pred HHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHH
Q psy1604 336 KDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDI 415 (693)
Q Consensus 336 ~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~ 415 (693)
.+++....+.+.++++||+||||++.+++|...+..++.....+.....|++++|||++..+..+...++
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~---------- 232 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL---------- 232 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC----------
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc----------
Confidence 9999988888999999999999999999999999999987656655678999999999887665443330
Q ss_pred HhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeE
Q psy1604 416 LDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQ 495 (693)
Q Consensus 416 l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~ 495 (693)
..+..+...........+.+
T Consensus 233 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~~ 252 (417)
T 2i4i_A 233 ------------------------------------------------------------DEYIFLAVGRVGSTSENITQ 252 (417)
T ss_dssp ------------------------------------------------------------SSCEEEEEC----CCSSEEE
T ss_pred ------------------------------------------------------------CCCEEEEeCCCCCCccCceE
Confidence 11222222222333445566
Q ss_pred EEEEccchhHHHHHHHHHhcc-CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy1604 496 TILEVPKQQKKKKLLELLREK-DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVA 574 (693)
Q Consensus 496 ~~~~~~~~~k~~~L~~~l~~~-~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVa 574 (693)
.+..+....|...+.++++.. ...++||||++++.++.+++.|.+.++.+..+||++++.+|.++++.|++|+.+||||
T Consensus 253 ~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlva 332 (417)
T 2i4i_A 253 KVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 332 (417)
T ss_dssp EEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEE
T ss_pred EEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 666777788889999998875 5778999999999999999999999999999999999999999999999999999999
Q ss_pred eCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhccCC
Q psy1604 575 TAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKFGGG 654 (693)
Q Consensus 575 T~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~~~ 654 (693)
|+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++ .+....+.+.+.+....+++|+||..++.
T Consensus 333 T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 411 (417)
T 2i4i_A 333 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVPSWLENMAY 411 (417)
T ss_dssp CHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECG-GGGGGHHHHHHHHHHTTCCCCHHHHHHHT
T ss_pred CChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEcc-ccHHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999985 56778899999999999999999999876
Q ss_pred CC
Q psy1604 655 GG 656 (693)
Q Consensus 655 ~~ 656 (693)
..
T Consensus 412 ~~ 413 (417)
T 2i4i_A 412 EH 413 (417)
T ss_dssp CS
T ss_pred hh
Confidence 54
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.6e-55 Score=479.83 Aligned_cols=375 Identities=30% Similarity=0.466 Sum_probs=316.8
Q ss_pred CCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCccc
Q psy1604 190 GDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVT 269 (693)
Q Consensus 190 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~ 269 (693)
....+.+..+|++++|++.++++|...||.+|+|+|+++++.+++++++++++|||+|||++|++|+++.+...
T Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------ 102 (410)
T 2j0s_A 29 TSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------ 102 (410)
T ss_dssp CCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT------
T ss_pred CCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc------
Confidence 33445567789999999999999999999999999999999999999999999999999999999999877432
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCce
Q psy1604 270 GYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASV 349 (693)
Q Consensus 270 ~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~ 349 (693)
..++++||++||++|+.|+++.+.++....++.+..++|+.....+...+..+++|+|+||++|.+++.+..+.+.++
T Consensus 103 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~ 180 (410)
T 2j0s_A 103 --VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAI 180 (410)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred --cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhhe
Confidence 234589999999999999999999999888899999999998888888888889999999999999999888888999
Q ss_pred eEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEE
Q psy1604 350 RFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFV 429 (693)
Q Consensus 350 ~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 429 (693)
++||+||||++.+.++...+..++.... ...|++++|||++..+..+...++
T Consensus 181 ~~vViDEah~~~~~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~------------------------ 232 (410)
T 2j0s_A 181 KMLVLDEADEMLNKGFKEQIYDVYRYLP----PATQVVLISATLPHEILEMTNKFM------------------------ 232 (410)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHTTSC----TTCEEEEEESCCCHHHHTTGGGTC------------------------
T ss_pred eEEEEccHHHHHhhhhHHHHHHHHHhCc----cCceEEEEEcCCCHHHHHHHHHHc------------------------
Confidence 9999999999999999999888886532 468999999999887655443331
Q ss_pred EechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccc-hhHHHH
Q psy1604 430 VLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPK-QQKKKK 508 (693)
Q Consensus 430 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~ 508 (693)
..+..+...........+.+.+..... ..|...
T Consensus 233 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 233 ----------------------------------------------TDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp ----------------------------------------------SSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHH
T ss_pred ----------------------------------------------CCCEEEEecCccccCCCceEEEEEeCcHHhHHHH
Confidence 000111111111122233344444443 348888
Q ss_pred HHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCC
Q psy1604 509 LLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIR 588 (693)
Q Consensus 509 L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~ 588 (693)
+.+++......++||||++++.++.+++.|.+.++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|+++
T Consensus 267 l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 346 (410)
T 2j0s_A 267 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVS 346 (410)
T ss_dssp HHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEE
T ss_pred HHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCC
Confidence 88888887778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchh
Q psy1604 589 HVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPE 647 (693)
Q Consensus 589 ~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~ 647 (693)
+||+||+|+++..|+||+||+||.|++|.|++|+++ .+...++.+.+.+.....++|.
T Consensus 347 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 347 LIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEG-GGHHHHHHHHHHTTCCCEECCS
T ss_pred EEEEECCCCCHHHHHHhcccccCCCCceEEEEEecH-HHHHHHHHHHHHhCCCceeccc
Confidence 999999999999999999999999999999999985 4667777777777665555543
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.2e-53 Score=465.61 Aligned_cols=376 Identities=28% Similarity=0.456 Sum_probs=302.3
Q ss_pred CCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCC
Q psy1604 193 PPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYC 272 (693)
Q Consensus 193 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~ 272 (693)
.+....+|+++++++.+++.|++.||..|+++|+++++.+++++++++++|||+|||++|++|+++.+....
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-------- 106 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL-------- 106 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS--------
T ss_pred ccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC--------
Confidence 345567899999999999999999999999999999999999999999999999999999999998875532
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHh-cCCcEEEechhhHHHHHhcCCcCCCceeE
Q psy1604 273 AQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLE-KGCNILVATMGRLKDILDRGRISLASVRF 351 (693)
Q Consensus 273 ~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~-~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 351 (693)
.+.++||++||++|+.|+.+.+.++....+..+...+|+.........+. ..++|+|+||++|.+.+.+..+.+.++++
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~ 186 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKM 186 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCE
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcE
Confidence 34579999999999999999999998888888888899887776665555 67899999999999999988888899999
Q ss_pred EEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEe
Q psy1604 352 VVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVL 431 (693)
Q Consensus 352 lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 431 (693)
||+||||++.+.++...+..++.... .+.|+++||||++.........++
T Consensus 187 vViDEah~~~~~~~~~~~~~~~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~-------------------------- 236 (414)
T 3eiq_A 187 FVLDEADEMLSRGFKDQIYDIFQKLN----SNTQVVLLSATMPSDVLEVTKKFM-------------------------- 236 (414)
T ss_dssp EEECSHHHHHHTTTHHHHHHHHTTSC----TTCEEEEECSCCCHHHHHHHTTTC--------------------------
T ss_pred EEEECHHHhhccCcHHHHHHHHHhCC----CCCeEEEEEEecCHHHHHHHHHHc--------------------------
Confidence 99999999999999999998887643 478999999999887665544331
Q ss_pred chhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEcc-chhHHHHHH
Q psy1604 432 DEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVP-KQQKKKKLL 510 (693)
Q Consensus 432 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~L~ 510 (693)
.....+...........+.+.+.... ...|...+.
T Consensus 237 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 272 (414)
T 3eiq_A 237 --------------------------------------------RDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC 272 (414)
T ss_dssp --------------------------------------------SSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHH
T ss_pred --------------------------------------------CCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHH
Confidence 00011111111112222333333333 345888899
Q ss_pred HHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEE
Q psy1604 511 ELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHV 590 (693)
Q Consensus 511 ~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~V 590 (693)
+++.....+++||||++++.++.+++.|.+.++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++|
T Consensus 273 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 273 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhc
Q psy1604 591 INYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKF 651 (693)
Q Consensus 591 I~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~ 651 (693)
|+||+|++...|+||+||+||.|++|.|++|+++. +...++.+.+.+.....++|..+.+
T Consensus 353 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE-DKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp EESSCCSSTHHHHHHSCCC-------CEEEEECST-HHHHHHHHHHHTTCCCEECCC----
T ss_pred EEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHH-HHHHHHHHHHHHcCCccccChhhhh
Confidence 99999999999999999999999999999999854 6777888888888888888877654
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.8e-53 Score=458.07 Aligned_cols=372 Identities=28% Similarity=0.447 Sum_probs=311.6
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCC
Q psy1604 196 PIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQP 275 (693)
Q Consensus 196 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~ 275 (693)
...+|++++|++.+.++|.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+.
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--------~~~~ 90 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--------LNKI 90 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--------SCSC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc--------cCCc
Confidence 45679999999999999999999999999999999999999999999999999999999999887543 2345
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEc
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLD 355 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlD 355 (693)
++||++||++|+.|+++.+.++....++++...+|+.....+...+...++|+|+||++|.+++.+....+.++++||+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 79999999999999999999998888889999999988777666677789999999999999998877788999999999
Q ss_pred cchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhh
Q psy1604 356 EADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 435 (693)
Q Consensus 356 Eah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~ 435 (693)
|||++.+.++...+..++.... ...|+++||||++..+.......+.. ...
T Consensus 171 EaH~~~~~~~~~~~~~i~~~~~----~~~~~i~lSAT~~~~~~~~~~~~~~~-----------------~~~-------- 221 (400)
T 1s2m_A 171 EADKMLSRDFKTIIEQILSFLP----PTHQSLLFSATFPLTVKEFMVKHLHK-----------------PYE-------- 221 (400)
T ss_dssp SHHHHSSHHHHHHHHHHHTTSC----SSCEEEEEESCCCHHHHHHHHHHCSS-----------------CEE--------
T ss_pred CchHhhhhchHHHHHHHHHhCC----cCceEEEEEecCCHHHHHHHHHHcCC-----------------CeE--------
Confidence 9999998888888888776532 36799999999987765543322000 000
Q ss_pred hhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc
Q psy1604 436 RMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE 515 (693)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~ 515 (693)
+.. ........+.+.+.......|...+..++..
T Consensus 222 ---------------------------------------------~~~-~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~ 255 (400)
T 1s2m_A 222 ---------------------------------------------INL-MEELTLKGITQYYAFVEERQKLHCLNTLFSK 255 (400)
T ss_dssp ---------------------------------------------ESC-CSSCBCTTEEEEEEECCGGGHHHHHHHHHHH
T ss_pred ---------------------------------------------EEe-ccccccCCceeEEEEechhhHHHHHHHHHhh
Confidence 000 0001112233444455667788888888888
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCC
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDL 595 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~ 595 (693)
...+++||||+++..++.+++.|++.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+
T Consensus 256 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 256 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhc
Q psy1604 596 PQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKF 651 (693)
Q Consensus 596 p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~ 651 (693)
|+++..|+||+||+||.|++|.|++|++++ +...++.+.+.+....+++|.++.+
T Consensus 336 p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 336 PKTAETYLHRIGRSGRFGHLGLAINLINWN-DRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp CSSHHHHHHHHCBSSCTTCCEEEEEEECGG-GHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred CCCHHHHHHhcchhcCCCCCceEEEEeccc-hHHHHHHHHHHhCCCcccccccccc
Confidence 999999999999999999999999999865 5566777777776666666665443
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.4e-53 Score=457.46 Aligned_cols=371 Identities=27% Similarity=0.458 Sum_probs=309.8
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV 277 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v 277 (693)
.+|++++|++.+.+.|.++||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~~~ 79 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQVSV 79 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--------TTCCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--------CCCeeE
Confidence 468999999999999999999999999999999999999999999999999999999999887543 234589
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCC-CeeEEEEeCCCChHHHHHHHhc-CCcEEEechhhHHHHHhcCCcCCCceeEEEEc
Q psy1604 278 IICAPTRELVMQIHEVACKYAYSS-VLKICLHYGGASSMHFNRQLEK-GCNILVATMGRLKDILDRGRISLASVRFVVLD 355 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlD 355 (693)
||++||++|+.||.+.+.++.... ++++..++|+.....+...+.. .++|+|+||++|.+++......+.++++||+|
T Consensus 80 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViD 159 (391)
T 1xti_A 80 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 159 (391)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEe
Confidence 999999999999999999997654 7889999999887766666554 47999999999999998888888999999999
Q ss_pred cchhhhhC-CchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechh
Q psy1604 356 EADRMLDM-GFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEA 434 (693)
Q Consensus 356 Eah~l~~~-~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~ 434 (693)
|||++.+. ++...+..++.... ...|++++|||++..+......++. ..
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~------------------~~-------- 209 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTP----HEKQVMMFSATLSKEIRPVCRKFMQ------------------DP-------- 209 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSC----SSSEEEEEESSCCSTHHHHHHHHCS------------------SC--------
T ss_pred CHHHHhhccchHHHHHHHHhhCC----CCceEEEEEeeCCHHHHHHHHHHcC------------------CC--------
Confidence 99999874 66677777765432 3789999999998876554333310 00
Q ss_pred hhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeec-ccccccceeEEEEEccchhHHHHHHHHH
Q psy1604 435 DRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGI-IGGASTDVVQTILEVPKQQKKKKLLELL 513 (693)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~L~~~l 513 (693)
..+.... .......+.+.+.......|...+.+++
T Consensus 210 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 245 (391)
T 1xti_A 210 --------------------------------------------MEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL 245 (391)
T ss_dssp --------------------------------------------EEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHH
T ss_pred --------------------------------------------eEEEecCccccCcccceEEEEEcCchhHHHHHHHHH
Confidence 0000000 0011123344455566778888899999
Q ss_pred hccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEc
Q psy1604 514 REKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINY 593 (693)
Q Consensus 514 ~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~ 593 (693)
.....+++||||+++..++.+++.|.+.++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+|
T Consensus 246 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 246 DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp HHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEES
T ss_pred HhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHh
Q psy1604 594 DLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLK 650 (693)
Q Consensus 594 d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~ 650 (693)
++|+++..|+||+||+||.|++|.|++|+++.++..+.+.+.+.+....+++|..++
T Consensus 326 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (391)
T 1xti_A 326 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 382 (391)
T ss_dssp SCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCC
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcccc
Confidence 999999999999999999999999999999777777788888877766666665543
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.8e-51 Score=447.87 Aligned_cols=371 Identities=26% Similarity=0.406 Sum_probs=301.8
Q ss_pred CCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcc
Q psy1604 191 DNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELV 268 (693)
Q Consensus 191 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~ 268 (693)
..++.++.+|++++|++.+++.|.+.||..|+|+|.++++.++++ +++++++|||+|||++|++|+++.+....
T Consensus 18 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~---- 93 (412)
T 3fht_A 18 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---- 93 (412)
T ss_dssp TSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS----
T ss_pred CCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC----
Confidence 344566789999999999999999999999999999999999987 99999999999999999999999875542
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcC-CCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhc-CCcCC
Q psy1604 269 TGYCAQPEVIICAPTRELVMQIHEVACKYAYS-SVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDR-GRISL 346 (693)
Q Consensus 269 ~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~-~~~~l 346 (693)
.++++||++||++|+.|+++.+.++... ..+.+....++...... ....++|+|+||++|.+++.+ ..+.+
T Consensus 94 ----~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~ 166 (412)
T 3fht_A 94 ----KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDP 166 (412)
T ss_dssp ----CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCG
T ss_pred ----CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcCh
Confidence 3458999999999999999999998754 35777777776654322 234679999999999999865 55678
Q ss_pred CceeEEEEccchhhhh-CCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccc
Q psy1604 347 ASVRFVVLDEADRMLD-MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLAS 425 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~-~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 425 (693)
.++++||+||||++.+ .++...+..++.... .+.|++++|||++..+..+...++ .
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~------------------~- 223 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLP----RNCQMLLFSATFEDSVWKFAQKVV------------------P- 223 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC----TTCEEEEEESCCCHHHHHHHHHHS------------------S-
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC----CCceEEEEEeecCHHHHHHHHHhc------------------C-
Confidence 8999999999999987 567777776665532 368999999999887665544331 0
Q ss_pred eeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEcc-chh
Q psy1604 426 VRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVP-KQQ 504 (693)
Q Consensus 426 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 504 (693)
....+...........+.+.+.... ...
T Consensus 224 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 224 ---------------------------------------------------DPNVIKLKREEETLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp ---------------------------------------------------SCEEECCCGGGSSCTTEEEEEEECSSHHH
T ss_pred ---------------------------------------------------CCeEEeeccccccccCceEEEEEcCChHH
Confidence 0001111111112222333333333 356
Q ss_pred HHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCC
Q psy1604 505 KKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDI 584 (693)
Q Consensus 505 k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDi 584 (693)
+...+.+++.....+++||||+++..++.+++.|.+.++.+..+||+|++.+|.++++.|++|+.+|||||+++++|+|+
T Consensus 253 ~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 332 (412)
T 3fht_A 253 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV 332 (412)
T ss_dssp HHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCC
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCc
Confidence 78888888888788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCC------ChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCch
Q psy1604 585 KGIRHVINYDLPQ------EIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVP 646 (693)
Q Consensus 585 p~v~~VI~~d~p~------s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp 646 (693)
|++++||+||+|+ +..+|+||+||+||.|+.|.|++|+++.++...++.+.+.+......++
T Consensus 333 p~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 333 EQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp TTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred cCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 9999999999994 6789999999999999999999999977667788888888766655544
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3e-51 Score=443.30 Aligned_cols=358 Identities=30% Similarity=0.448 Sum_probs=295.0
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCC
Q psy1604 196 PIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCA 273 (693)
Q Consensus 196 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~ 273 (693)
...+|++++|++.+++.|.+.||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+.... .
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~ 74 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED--------A 74 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC--------C
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC--------C
Confidence 4578999999999999999999999999999999999988 99999999999999999999998875442 3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEE
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVV 353 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lV 353 (693)
++++||++||++|+.|+++.+.++.....+.+...+++..... ...+++|+|+||++|.+.+.+....+.++++||
T Consensus 75 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 150 (395)
T 3pey_A 75 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFV 150 (395)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEE
Confidence 4589999999999999999999998888888888877654322 234689999999999999988888899999999
Q ss_pred Eccchhhhh-CCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEec
Q psy1604 354 LDEADRMLD-MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLD 432 (693)
Q Consensus 354 lDEah~l~~-~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d 432 (693)
+||||++.+ .++...+..+..... ...|++++|||+++.+......+..
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~-------------------------- 200 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLP----KDTQLVLFSATFADAVRQYAKKIVP-------------------------- 200 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSC----TTCEEEEEESCCCHHHHHHHHHHSC--------------------------
T ss_pred EEChhhhcCccccHHHHHHHHHhCC----CCcEEEEEEecCCHHHHHHHHHhCC--------------------------
Confidence 999999988 567777766665532 3679999999998876655433310
Q ss_pred hhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEc-cchhHHHHHHH
Q psy1604 433 EADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEV-PKQQKKKKLLE 511 (693)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~L~~ 511 (693)
....+...........+.+.+... ....+...+..
T Consensus 201 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (395)
T 3pey_A 201 --------------------------------------------NANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTE 236 (395)
T ss_dssp --------------------------------------------SCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred --------------------------------------------CCeEEEccccccccccccEEEEEcCchHHHHHHHHH
Confidence 000000000111112223333333 34567777888
Q ss_pred HHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEE
Q psy1604 512 LLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVI 591 (693)
Q Consensus 512 ~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI 591 (693)
++.....+++||||+++..++.+++.|++.++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||
T Consensus 237 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi 316 (395)
T 3pey_A 237 LYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVV 316 (395)
T ss_dssp HHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEE
T ss_pred HHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEE
Confidence 88877888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCC------ChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHH
Q psy1604 592 NYDLPQ------EIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILE 639 (693)
Q Consensus 592 ~~d~p~------s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~ 639 (693)
+||+|+ |+..|+||+||+||.|++|.|++|+.+.++..+.+.+.+.+.
T Consensus 317 ~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 317 NYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp ESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred EcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 999999 999999999999999999999999987666666666666554
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.5e-50 Score=431.70 Aligned_cols=357 Identities=35% Similarity=0.574 Sum_probs=301.7
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcC-CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCe
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEG-RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPE 276 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g-~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~ 276 (693)
.+|++++|++.+.+.|++.||.+|+|+|+++++.++++ +++++++|||+|||++|++|++..+... .+.+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---------~~~~ 76 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGIE 76 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSCC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---------CCCc
Confidence 56999999999999999999999999999999999988 7999999999999999999999876542 2457
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEcc
Q psy1604 277 VIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 356 (693)
Q Consensus 277 vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 356 (693)
+||++|+++|+.|+.+.+.++.....+.+...+|+.........+. +++|+|+||++|.+.+......+.++++||+||
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDE 155 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeC
Confidence 9999999999999999999998888888999999887766555444 689999999999999988878889999999999
Q ss_pred chhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 357 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
||++.+.++...+..++.... ...+++++|||++.........++
T Consensus 156 ah~~~~~~~~~~~~~~~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~------------------------------- 200 (367)
T 1hv8_A 156 ADEMLNMGFIKDVEKILNACN----KDKRILLFSATMPREILNLAKKYM------------------------------- 200 (367)
T ss_dssp HHHHHTTTTHHHHHHHHHTSC----SSCEEEEECSSCCHHHHHHHHHHC-------------------------------
T ss_pred chHhhhhchHHHHHHHHHhCC----CCceEEEEeeccCHHHHHHHHHHc-------------------------------
Confidence 999999999888888876532 467999999999876554433220
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK 516 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 516 (693)
..+..+.. ....++.+.+.......+...+.+++. .
T Consensus 201 ---------------------------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~-~ 236 (367)
T 1hv8_A 201 ---------------------------------------GDYSFIKA----KINANIEQSYVEVNENERFEALCRLLK-N 236 (367)
T ss_dssp ---------------------------------------CSEEEEEC----CSSSSSEEEEEECCGGGHHHHHHHHHC-S
T ss_pred ---------------------------------------CCCeEEEe----cCCCCceEEEEEeChHHHHHHHHHHHh-c
Confidence 00111100 011233444555667788888888887 4
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLP 596 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p 596 (693)
...++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 316 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLP 316 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCC
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCC
Q psy1604 597 QEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQP 644 (693)
Q Consensus 597 ~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~ 644 (693)
+|+.+|+||+||+||.|++|.|++++++. +....+.+.+.++..-.+
T Consensus 317 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 317 QNPESYMHRIGRTGRAGKKGKAISIINRR-EYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp SCHHHHHHHSTTTCCSSSCCEEEEEECTT-SHHHHHHHHHHHTCCCCC
T ss_pred CCHHHhhhcccccccCCCccEEEEEEcHH-HHHHHHHHHHHhCCCCce
Confidence 99999999999999999999999999854 666667777766544333
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.1e-52 Score=452.51 Aligned_cols=374 Identities=28% Similarity=0.470 Sum_probs=172.6
Q ss_pred CCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCC
Q psy1604 194 PRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCA 273 (693)
Q Consensus 194 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~ 273 (693)
..+..+|++++|++.+.+.+...||.+|+|+|+++++.+++++++++++|||+|||++|++|+++.+... ..
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--------~~ 88 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--------VK 88 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT--------CC
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc--------CC
Confidence 3456779999999999999999999999999999999999999999999999999999999999887543 23
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEE
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVV 353 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lV 353 (693)
++++||++||++|+.|+++.+.++....++++..++|+.........+. +++|+|+||++|.+.+.+....+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 4589999999999999999999998888889999999887766555444 689999999999999988888889999999
Q ss_pred EccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEech
Q psy1604 354 LDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 433 (693)
Q Consensus 354 lDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~ 433 (693)
+||||++.+.++...+..++.... +..|++++|||++..+......++. ...... ...
T Consensus 168 iDEah~~~~~~~~~~~~~~~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~~-----------------~~~~~~-~~~ 225 (394)
T 1fuu_A 168 LDEADEMLSSGFKEQIYQIFTLLP----PTTQVVLLSATMPNDVLEVTTKFMR-----------------NPVRIL-VKK 225 (394)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSC----TTCEEEEECSSCCHHHHHHHHHHCC-----------------SCEEEE-ECC
T ss_pred EEChHHhhCCCcHHHHHHHHHhCC----CCceEEEEEEecCHHHHHHHHHhcC-----------------CCeEEE-ecC
Confidence 999999999999998888876643 3679999999998866554333310 000000 000
Q ss_pred hhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccc-hhHHHHHHHH
Q psy1604 434 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPK-QQKKKKLLEL 512 (693)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~~ 512 (693)
.......+.+.+..... ..+...+.++
T Consensus 226 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (394)
T 1fuu_A 226 ----------------------------------------------------DELTLEGIKQFYVNVEEEEYKYECLTDL 253 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------ccccCCCceEEEEEcCchhhHHHHHHHH
Confidence 00000011111111111 2245556666
Q ss_pred HhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEE
Q psy1604 513 LREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVIN 592 (693)
Q Consensus 513 l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~ 592 (693)
+.....+++||||++++.++.+++.|++.++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 254 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~ 333 (394)
T 1fuu_A 254 YDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN 333 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE
Confidence 66666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHhc
Q psy1604 593 YDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLKF 651 (693)
Q Consensus 593 ~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~~ 651 (693)
+++|+++..|+||+||+||.|++|.|++|++++ +...++.+.+.+......+|..+.+
T Consensus 334 ~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ 391 (394)
T 1fuu_A 334 YDLPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDIAT 391 (394)
T ss_dssp -----------------------------------------------------------
T ss_pred eCCCCCHHHHHHHcCcccCCCCCceEEEEEchh-HHHHHHHHHHHhCCcccccCcchhh
Confidence 999999999999999999999999999999855 5667788888888777777766544
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.9e-52 Score=463.26 Aligned_cols=367 Identities=26% Similarity=0.402 Sum_probs=161.8
Q ss_pred CCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCC
Q psy1604 195 RPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYC 272 (693)
Q Consensus 195 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~ 272 (693)
.++.+|++++|++.+++.|..+||.+|+|+|.++++.++++ ++++++||||||||++|++|+++.+... .
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~--------~ 160 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--------N 160 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--------S
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--------C
Confidence 45778999999999999999999999999999999999987 8999999999999999999999877543 2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhcC-CCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhc-CCcCCCcee
Q psy1604 273 AQPEVIICAPTRELVMQIHEVACKYAYS-SVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDR-GRISLASVR 350 (693)
Q Consensus 273 ~~~~vLil~Ptr~La~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~-~~~~l~~~~ 350 (693)
..+++|||+||++|+.|+++.+.++... ..+.+....++...... ....++|+|+||++|.+++.+ ..+.+.+++
T Consensus 161 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 237 (479)
T 3fmp_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 237 (479)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCC
T ss_pred CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCC
Confidence 3458999999999999999999988754 35677777776543322 134679999999999999965 456789999
Q ss_pred EEEEccchhhhh-CCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEE
Q psy1604 351 FVVLDEADRMLD-MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFV 429 (693)
Q Consensus 351 ~lVlDEah~l~~-~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 429 (693)
+|||||||++.+ .++...+..++.... ...|++++|||++..+..++..++ .....+
T Consensus 238 ~iViDEah~~~~~~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~~------------------~~~~~i 295 (479)
T 3fmp_B 238 VFVLDEADVMIATQGHQDQSIRIQRMLP----RNCQMLLFSATFEDSVWKFAQKVV------------------PDPNVI 295 (479)
T ss_dssp EEEECCHHHHHTSTTHHHHHHHHHTTSC----TTSEEEEEESCCCHHHHHHHHHHS------------------SSEEEE
T ss_pred EEEEECHHHHhhcCCcHHHHHHHHhhCC----ccceEEEEeCCCCHHHHHHHHHHc------------------CCCeEE
Confidence 999999999987 566666666665432 478999999999987766554431 011111
Q ss_pred EechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEcc-chhHHHH
Q psy1604 430 VLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVP-KQQKKKK 508 (693)
Q Consensus 430 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~ 508 (693)
. ..........+.+.+..+. ...+...
T Consensus 296 ~----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (479)
T 3fmp_B 296 K----------------------------------------------------LKREEETLDTIKQYYVLCSSRDEKFQA 323 (479)
T ss_dssp E----------------------------------------------------EC-------------------------
T ss_pred e----------------------------------------------------ccccccCcCCceEEEEEeCCHHHHHHH
Confidence 1 1111111111222222222 2356666
Q ss_pred HHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCC
Q psy1604 509 LLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIR 588 (693)
Q Consensus 509 L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~ 588 (693)
+..++......++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 324 l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~ 403 (479)
T 3fmp_B 324 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCC
Confidence 77777766778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC------ChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCch
Q psy1604 589 HVINYDLPQ------EIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVP 646 (693)
Q Consensus 589 ~VI~~d~p~------s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp 646 (693)
+||+||+|. +...|+||+||+||.|+.|.|++|+++.++..+++.+.+.+......++
T Consensus 404 ~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 404 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred EEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 999999994 6789999999999999999999999987777888888888776655554
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5.8e-50 Score=453.95 Aligned_cols=362 Identities=29% Similarity=0.455 Sum_probs=282.5
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhhhhhhh--cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcC
Q psy1604 205 LREILVKNLKKSNYTKPTPIQKYAIPAGL--EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAP 282 (693)
Q Consensus 205 l~~~l~~~l~~~g~~~p~~~Q~~ai~~il--~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~P 282 (693)
|++.+++.|.+.||.+|+|+|.++++.++ .+++++++||||||||++|++|+++.+....... ...+++|||+|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~----~~~~~~lil~P 154 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS----QYMVKAVIVAP 154 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS----TTSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccc----cCCeeEEEEcC
Confidence 99999999999999999999999999999 6789999999999999999999999998765321 23568999999
Q ss_pred CHHHHHHHHHHHHHHhc----CCCeeEEEEeCCCChHHHHHHH-hcCCcEEEechhhHHHHHhcC-CcCCCceeEEEEcc
Q psy1604 283 TRELVMQIHEVACKYAY----SSVLKICLHYGGASSMHFNRQL-EKGCNILVATMGRLKDILDRG-RISLASVRFVVLDE 356 (693)
Q Consensus 283 tr~La~Q~~~~~~~~~~----~~~l~~~~~~gg~~~~~~~~~~-~~~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~lVlDE 356 (693)
|++|+.|+++.+.++.. .....+..++|+.........+ ..+++|+|+||++|.+++.+. ...+.++++|||||
T Consensus 155 tr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 234 (563)
T 3i5x_A 155 TRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE 234 (563)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEET
T ss_pred cHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeC
Confidence 99999999999998743 2345677888888766655555 458999999999999988764 33578899999999
Q ss_pred chhhhhCCchHHHHHHhccCC---CCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEech
Q psy1604 357 ADRMLDMGFLGDIQHVMQHST---MPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 433 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~---~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~ 433 (693)
||++++++|...+..++.... .......|+++||||+++.+..+...++. ......++.
T Consensus 235 ah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~------------------~~~~~~~~~ 296 (563)
T 3i5x_A 235 ADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN------------------KKECLFLDT 296 (563)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCC------------------SSEEEEEES
T ss_pred HHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcC------------------CCceEEEec
Confidence 999999999999888765421 12234779999999999877665544410 000000000
Q ss_pred hhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccc-hhH----HHH
Q psy1604 434 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPK-QQK----KKK 508 (693)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k----~~~ 508 (693)
. ..........+.+.+..... ..+ ...
T Consensus 297 ~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (563)
T 3i5x_A 297 V------------------------------------------------DKNEPEAHERIDQSVVISEKFANSIFAAVEH 328 (563)
T ss_dssp S------------------------------------------------CSSSCSSCTTEEEEEEEESSTTHHHHHHHHH
T ss_pred c------------------------------------------------CCCCccccccCceEEEECchhHhhHHHHHHH
Confidence 0 00000111122222222222 122 233
Q ss_pred HHHHHhc-cCCCcEEEEecChHhHHHHHHHHhhC---CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCC
Q psy1604 509 LLELLRE-KDEDGVIVFVSTIRNADFIACYLCET---EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDI 584 (693)
Q Consensus 509 L~~~l~~-~~~~kvLVF~~s~~~a~~l~~~L~~~---~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDi 584 (693)
+...+.. ....++||||+++..++.++..|++. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+
T Consensus 329 l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi 408 (563)
T 3i5x_A 329 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF 408 (563)
T ss_dssp HHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCC
T ss_pred HHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCc
Confidence 3333433 56779999999999999999999876 8999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHH
Q psy1604 585 KGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRI 637 (693)
Q Consensus 585 p~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~ 637 (693)
|++++||+||+|.++..|+||+|||||.|+.|.|++|+.+. +..+++.+.+.
T Consensus 409 p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-e~~~~~~l~~~ 460 (563)
T 3i5x_A 409 PNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKD-ELPFVRELEDA 460 (563)
T ss_dssp TTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG-GHHHHHHHHHH
T ss_pred ccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchh-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999854 55555555544
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.9e-50 Score=455.86 Aligned_cols=361 Identities=29% Similarity=0.456 Sum_probs=282.7
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhhhhhhh--cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcC
Q psy1604 205 LREILVKNLKKSNYTKPTPIQKYAIPAGL--EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAP 282 (693)
Q Consensus 205 l~~~l~~~l~~~g~~~p~~~Q~~ai~~il--~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~P 282 (693)
|++.+++.|..+||..|+|+|.++++.++ .+++++++||||+|||++|++|+++.+....... ...+++|||+|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~----~~~~~~lvl~P 103 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS----QYMVKAVIVAP 103 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS----TTSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccc----cCCCeEEEEcc
Confidence 99999999999999999999999999999 7889999999999999999999999988764321 33568999999
Q ss_pred CHHHHHHHHHHHHHHhc----CCCeeEEEEeCCCChHHHHHHHh-cCCcEEEechhhHHHHHhcC-CcCCCceeEEEEcc
Q psy1604 283 TRELVMQIHEVACKYAY----SSVLKICLHYGGASSMHFNRQLE-KGCNILVATMGRLKDILDRG-RISLASVRFVVLDE 356 (693)
Q Consensus 283 tr~La~Q~~~~~~~~~~----~~~l~~~~~~gg~~~~~~~~~~~-~~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~lVlDE 356 (693)
|++|+.|+++.+.++.. ...+.+..++|+.........+. .+++|+|+||++|.+++.+. ...+..+++|||||
T Consensus 104 tr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDE 183 (579)
T 3sqw_A 104 TRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE 183 (579)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEET
T ss_pred hHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEC
Confidence 99999999999998752 24467788888887766665553 47999999999999988764 34678899999999
Q ss_pred chhhhhCCchHHHHHHhccCC---CCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEech
Q psy1604 357 ADRMLDMGFLGDIQHVMQHST---MPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 433 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~---~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~ 433 (693)
||+|++++|...+..++.... .......|+++||||+++.+..+...++. ......++.
T Consensus 184 ah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~------------------~~~~~~~~~ 245 (579)
T 3sqw_A 184 ADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN------------------KKECLFLDT 245 (579)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCC------------------SSEEEEEES
T ss_pred hHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcC------------------CCceEEEee
Confidence 999999999999888775431 11223679999999999877665544410 000000000
Q ss_pred hhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccc-h----hHHHH
Q psy1604 434 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPK-Q----QKKKK 508 (693)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~k~~~ 508 (693)
. ..........+.+.+..... . .....
T Consensus 246 ~------------------------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 277 (579)
T 3sqw_A 246 V------------------------------------------------DKNEPEAHERIDQSVVISEKFANSIFAAVEH 277 (579)
T ss_dssp S------------------------------------------------CSSSCSSCTTEEEEEEEESSTTHHHHHHHHH
T ss_pred c------------------------------------------------CccccccccccceEEEEecchhhhHHHHHHH
Confidence 0 00000111122222222222 1 22233
Q ss_pred HHHHHhc-cCCCcEEEEecChHhHHHHHHHHhhC---CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCC
Q psy1604 509 LLELLRE-KDEDGVIVFVSTIRNADFIACYLCET---EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDI 584 (693)
Q Consensus 509 L~~~l~~-~~~~kvLVF~~s~~~a~~l~~~L~~~---~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDi 584 (693)
+...+.. ....++||||+++..++.++..|.+. ++.+..+||+|++.+|.++++.|++|+.+|||||+++++|||+
T Consensus 278 l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDi 357 (579)
T 3sqw_A 278 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF 357 (579)
T ss_dssp HHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCC
T ss_pred HHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCc
Confidence 3444443 55779999999999999999999876 8999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHH
Q psy1604 585 KGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVR 636 (693)
Q Consensus 585 p~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~ 636 (693)
|++++||+||+|.++..|+||+||+||.|+.|.|++|+.+. +..+++.+.+
T Consensus 358 p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-e~~~~~~l~~ 408 (579)
T 3sqw_A 358 PNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKD-ELPFVRELED 408 (579)
T ss_dssp TTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG-GHHHHHHHHH
T ss_pred ccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEccc-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999864 4455555543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-48 Score=412.91 Aligned_cols=335 Identities=33% Similarity=0.526 Sum_probs=273.7
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCH
Q psy1604 205 LREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTR 284 (693)
Q Consensus 205 l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr 284 (693)
|++.+.+.|+++||.+|+|+|+++++.+++++++++++|||+|||++|++|+++. +.++||++|++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~~ 66 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPTR 66 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSSH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCCH
Confidence 5789999999999999999999999999999999999999999999999998863 23689999999
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCC
Q psy1604 285 ELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG 364 (693)
Q Consensus 285 ~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~ 364 (693)
+|+.|+++.+.++....++++..++|+.....+...+. .++|+|+||++|.+.+....+.+.++++||+||||++.+++
T Consensus 67 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~ 145 (337)
T 2z0m_A 67 ELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG 145 (337)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc
Confidence 99999999999998888889999999888766655544 48999999999999998887788999999999999999999
Q ss_pred chHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCccc
Q psy1604 365 FLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLG 444 (693)
Q Consensus 365 ~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 444 (693)
+...+..++.... ...+++++|||++.........++. .+...
T Consensus 146 ~~~~~~~~~~~~~----~~~~~~~~SAT~~~~~~~~~~~~~~------------------~~~~~--------------- 188 (337)
T 2z0m_A 146 FIDDIKIILAQTS----NRKITGLFSATIPEEIRKVVKDFIT------------------NYEEI--------------- 188 (337)
T ss_dssp CHHHHHHHHHHCT----TCSEEEEEESCCCHHHHHHHHHHSC------------------SCEEE---------------
T ss_pred cHHHHHHHHhhCC----cccEEEEEeCcCCHHHHHHHHHhcC------------------Cceee---------------
Confidence 9988888876533 3678899999998876554433310 00000
Q ss_pred chhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEE
Q psy1604 445 DIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVF 524 (693)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF 524 (693)
.. .....++.+.+....... ....+.+......++|||
T Consensus 189 -------------------------------------~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvf 226 (337)
T 2z0m_A 189 -------------------------------------EA---CIGLANVEHKFVHVKDDW--RSKVQALRENKDKGVIVF 226 (337)
T ss_dssp -------------------------------------EC---SGGGGGEEEEEEECSSSS--HHHHHHHHTCCCSSEEEE
T ss_pred -------------------------------------ec---ccccCCceEEEEEeChHH--HHHHHHHHhCCCCcEEEE
Confidence 00 000111122222222221 223356666778899999
Q ss_pred ecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhh
Q psy1604 525 VSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVH 604 (693)
Q Consensus 525 ~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Q 604 (693)
|++++.++.+++.|. .+..+||+++..+|.+++++|++|+.+|||||+++++|+|+|++++||+|++|+|+..|+|
T Consensus 227 ~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q 302 (337)
T 2z0m_A 227 VRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIH 302 (337)
T ss_dssp CSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHH
T ss_pred EcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhH
Confidence 999999999999886 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCcceEEEEeCCCCchHHHHHHHHHHH
Q psy1604 605 RIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILE 639 (693)
Q Consensus 605 r~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~ 639 (693)
|+||+||.|++|.|++|+. .+....+.+.+.+.
T Consensus 303 ~~GR~gR~g~~g~~~~~~~--~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 303 RIGRTGRMGRKGEAITFIL--NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHTTBCGGGCCEEEEEEES--SCHHHHHHHC----
T ss_pred hcCccccCCCCceEEEEEe--CcHHHHHHHHHHhc
Confidence 9999999999999999998 46667777776654
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6e-49 Score=438.34 Aligned_cols=369 Identities=25% Similarity=0.382 Sum_probs=249.8
Q ss_pred CCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCC
Q psy1604 194 PRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGY 271 (693)
Q Consensus 194 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~ 271 (693)
|..+..|...++++.+.+.+.+.|+..|+++|.++++.++++ +++++++|||||||++|++++++.+....
T Consensus 115 p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~------- 187 (508)
T 3fho_A 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV------- 187 (508)
T ss_dssp ------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC-------
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC-------
Confidence 445556777889999999999999999999999999999998 99999999999999999999999885542
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeE
Q psy1604 272 CAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRF 351 (693)
Q Consensus 272 ~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 351 (693)
.++++||++|+++|+.|+++.+.++.....+.+...+++.... .....++|+|+||++|.+.+.+..+.+.++++
T Consensus 188 -~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~l 262 (508)
T 3fho_A 188 -PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKV 262 (508)
T ss_dssp -CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred -CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCE
Confidence 3458999999999999999999999877666666555544322 22347899999999999999888888999999
Q ss_pred EEEccchhhhh-CCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEE
Q psy1604 352 VVLDEADRMLD-MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVV 430 (693)
Q Consensus 352 lVlDEah~l~~-~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 430 (693)
||+||||++.+ .++...+..++.... ...|++++|||+++.+..+...+.. ....
T Consensus 263 IIiDEaH~~~~~~~~~~~~~~i~~~~~----~~~~~i~lSAT~~~~~~~~~~~~~~------------------~~~~-- 318 (508)
T 3fho_A 263 FVLDEADNMLDQQGLGDQSMRIKHLLP----RNTQIVLFSATFSERVEKYAERFAP------------------NANE-- 318 (508)
T ss_dssp EEECCHHHHTTC--CHHHHHHHHHHSC----TTCEEEEEESCCSTHHHHHHHHHST------------------TCEE--
T ss_pred EEEechhhhcccCCcHHHHHHHHHhCC----cCCeEEEEeCCCCHHHHHHHHHhcC------------------CCeE--
Confidence 99999999987 577777777776533 3679999999998776655443310 0000
Q ss_pred echhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEc-cchhHHHHH
Q psy1604 431 LDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEV-PKQQKKKKL 509 (693)
Q Consensus 431 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~L 509 (693)
+...........+.+.+... ....+...+
T Consensus 319 --------------------------------------------------i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 348 (508)
T 3fho_A 319 --------------------------------------------------IRLKTEELSVEGIKQLYMDCQSEEHKYNVL 348 (508)
T ss_dssp --------------------------------------------------ECCCCCC----CCCCEEEEC--CHHHHHHH
T ss_pred --------------------------------------------------EEeccccCCcccceEEEEECCchHHHHHHH
Confidence 00000000111122222222 345677778
Q ss_pred HHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCE
Q psy1604 510 LELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRH 589 (693)
Q Consensus 510 ~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~ 589 (693)
.+++.....+++||||+++..++.++..|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 349 ~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~ 428 (508)
T 3fho_A 349 VELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNL 428 (508)
T ss_dssp HHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCE
T ss_pred HHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCE
Confidence 88888778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC------CChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhH
Q psy1604 590 VINYDLP------QEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEF 648 (693)
Q Consensus 590 VI~~d~p------~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~ 648 (693)
||++|+| .++..|+||+||+||.|++|.|++|+.+.++...++.+.+.+......+|..
T Consensus 429 VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 429 VVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp EEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred EEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 9999999 8899999999999999999999999998778788888888887776666654
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.7e-47 Score=427.11 Aligned_cols=330 Identities=15% Similarity=0.251 Sum_probs=260.2
Q ss_pred cCCCCHHHHHHHHh-CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEE
Q psy1604 202 SAGLREILVKNLKK-SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIIC 280 (693)
Q Consensus 202 ~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil 280 (693)
++++++.+.+.|++ +||..|+|+|.++++.+++++|+++.+|||+|||++|++|++. ...++|||
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~--------------~~g~~lVi 90 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC--------------SDGFTLVI 90 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT--------------SSSEEEEE
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH--------------cCCcEEEE
Confidence 46788999999998 6999999999999999999999999999999999999999974 12379999
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH------hcCCcEEEechhhHH------HHHhcCCcCCCc
Q psy1604 281 APTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL------EKGCNILVATMGRLK------DILDRGRISLAS 348 (693)
Q Consensus 281 ~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~------~~~~~IlV~Tp~~L~------~~l~~~~~~l~~ 348 (693)
+|+++|+.|+.+.+.++ ++.+..+.++.......... ...++|+|+||++|. +.+.. ...+.+
T Consensus 91 sP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~ 165 (591)
T 2v1x_A 91 CPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARR 165 (591)
T ss_dssp CSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTC
T ss_pred eCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccC
Confidence 99999999999999987 46777888887765543332 347899999999874 22332 335678
Q ss_pred eeEEEEccchhhhhCC--chHHHHHH--hccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhcccccc
Q psy1604 349 VRFVVLDEADRMLDMG--FLGDIQHV--MQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLA 424 (693)
Q Consensus 349 ~~~lVlDEah~l~~~~--~~~~i~~i--~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 424 (693)
+++|||||||++.+++ |.+.+..+ +... .++.++++||||++..+......++ .. .
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~----~~~~~ii~lSAT~~~~v~~~i~~~l-----------~~-----~ 225 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ----FPNASLIGLTATATNHVLTDAQKIL-----------CI-----E 225 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH----CTTSEEEEEESSCCHHHHHHHHHHT-----------TC-----C
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHh----CCCCcEEEEecCCCHHHHHHHHHHh-----------CC-----C
Confidence 9999999999999887 66665442 2111 1367899999999877654433321 00 0
Q ss_pred ceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEc--cc
Q psy1604 425 SVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEV--PK 502 (693)
Q Consensus 425 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 502 (693)
... .+... . ..+++...+... ..
T Consensus 226 ~~~-------------------------------------~~~~~----~--------------~r~nl~~~v~~~~~~~ 250 (591)
T 2v1x_A 226 KCF-------------------------------------TFTAS----F--------------NRPNLYYEVRQKPSNT 250 (591)
T ss_dssp SCE-------------------------------------EEECC----C--------------CCTTEEEEEEECCSSH
T ss_pred CcE-------------------------------------EEecC----C--------------CCcccEEEEEeCCCcH
Confidence 000 00000 0 001111111111 12
Q ss_pred hhHHHHHHHHHhc-cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCccccc
Q psy1604 503 QQKKKKLLELLRE-KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRG 581 (693)
Q Consensus 503 ~~k~~~L~~~l~~-~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~G 581 (693)
..+...|.+++.. ....++||||++++.++.++..|...++.+..+||+|++.+|.+++++|++|+.+|||||+++++|
T Consensus 251 ~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~G 330 (591)
T 2v1x_A 251 EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMG 330 (591)
T ss_dssp HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTT
T ss_pred HHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcC
Confidence 4566778888865 367889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 582 LDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 582 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
||+|++++||+|++|+|++.|+||+|||||.|++|.|++||.+.
T Consensus 331 ID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 331 IDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp CCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred CCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChH
Confidence 99999999999999999999999999999999999999999854
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=8.5e-47 Score=420.96 Aligned_cols=335 Identities=19% Similarity=0.250 Sum_probs=263.3
Q ss_pred CccccCCCCHHHHHHHHh-CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCe
Q psy1604 198 ESFESAGLREILVKNLKK-SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPE 276 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~ 276 (693)
.+|++++|++.+.+.|++ +||..|+|+|.++++.+++++|+++++|||+|||++|++|++.. ..+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------------~g~ 67 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------------NGL 67 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------------SSE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------------CCC
Confidence 468899999999999998 89999999999999999999999999999999999999998842 136
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHH----HHhcCCcEEEechhhHHHHHhcCCcCCCceeEE
Q psy1604 277 VIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNR----QLEKGCNILVATMGRLKDILDRGRISLASVRFV 352 (693)
Q Consensus 277 vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~----~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~l 352 (693)
+||++|+++|+.|+.+.+.++ ++.+..+.++........ ......+|+|+||++|........+...++++|
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred EEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 899999999999999999886 467777777776554332 223468999999999953211112345789999
Q ss_pred EEccchhhhhCC--chHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEE
Q psy1604 353 VLDEADRMLDMG--FLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVV 430 (693)
Q Consensus 353 VlDEah~l~~~~--~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 430 (693)
||||||++.+++ |.+.+..+.... ...++.+++++|||++.......... +. + ....
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~--~~~~~~~~i~lSAT~~~~~~~~i~~~-----------l~---~--~~~~--- 202 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLR--QRFPTLPFMALTATADDTTRQDIVRL-----------LG---L--NDPL--- 202 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHH--HHCTTSCEEEEESCCCHHHHHHHHHH-----------HT---C--CSCE---
T ss_pred EEeCccccCcCCCccHHHHHHHHHHH--HhCCCCCEEEEeCCCCHHHHHHHHHH-----------hC---C--CCCe---
Confidence 999999999887 555555443211 11136789999999987654321111 00 0 0000
Q ss_pred echhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHH
Q psy1604 431 LDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLL 510 (693)
Q Consensus 431 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~ 510 (693)
+.. . ....+++. +.......+...+.
T Consensus 203 ------------------------------------------------~~~--~--~~~r~~l~--~~v~~~~~~~~~l~ 228 (523)
T 1oyw_A 203 ------------------------------------------------IQI--S--SFDRPNIR--YMLMEKFKPLDQLM 228 (523)
T ss_dssp ------------------------------------------------EEE--C--CCCCTTEE--EEEEECSSHHHHHH
T ss_pred ------------------------------------------------EEe--C--CCCCCceE--EEEEeCCCHHHHHH
Confidence 000 0 00001111 11122345677888
Q ss_pred HHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEE
Q psy1604 511 ELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHV 590 (693)
Q Consensus 511 ~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~V 590 (693)
+++......++||||++++.++.+++.|+..++.+..+||+|++.+|.++++.|++|+.+|||||+++++|||+|++++|
T Consensus 229 ~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~V 308 (523)
T 1oyw_A 229 RYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV 308 (523)
T ss_dssp HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEE
T ss_pred HHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEE
Confidence 88887778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 591 INYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 591 I~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
|+|++|+|++.|+||+||+||.|++|.|++|+++.
T Consensus 309 I~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~ 343 (523)
T 1oyw_A 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (523)
T ss_dssp EESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred EEECCCCCHHHHHHHhccccCCCCCceEEEEeCHH
Confidence 99999999999999999999999999999999854
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.6e-46 Score=409.23 Aligned_cols=331 Identities=24% Similarity=0.317 Sum_probs=256.1
Q ss_pred HHHHHHHhC-CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHH
Q psy1604 208 ILVKNLKKS-NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTREL 286 (693)
Q Consensus 208 ~l~~~l~~~-g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 286 (693)
.+.+.+++. +| +|+|+|.++++.+++++++++++|||||||++|+++++..+ ..++++||++||++|
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-----------~~~~~~lil~Pt~~L 76 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-----------RKGKKSALVFPTVTL 76 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-----------TTTCCEEEEESSHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-----------cCCCEEEEEECCHHH
Confidence 445555553 55 89999999999999999999999999999999999988766 224579999999999
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEeCCCCh---HHHHHHHhcC-CcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhh
Q psy1604 287 VMQIHEVACKYAYSSVLKICLHYGGASS---MHFNRQLEKG-CNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 287 a~Q~~~~~~~~~~~~~l~~~~~~gg~~~---~~~~~~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~ 362 (693)
+.|+++.+.++.. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||++.+
T Consensus 77 ~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~ 153 (414)
T 3oiy_A 77 VKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLK 153 (414)
T ss_dssp HHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHH
T ss_pred HHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhh
Confidence 9999999999887 78899999999887 3344445555 99999999999888774 5677999999999987653
Q ss_pred -----------CCchHH-HHHHhccC-------CCCCCCCcceEEeecc-CchhHHhhhhhhhhhchhhhHHHHhhcccc
Q psy1604 363 -----------MGFLGD-IQHVMQHS-------TMPDVANRQTLMFSAT-FPETIQKKGCNILVATMGRLKDILDRGRIS 422 (693)
Q Consensus 363 -----------~~~~~~-i~~i~~~~-------~~~~~~~~q~lllSAT-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 422 (693)
.+|... +..++... .++.....|++++||| +|..+....... .+. +
T Consensus 154 ~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~----------~~~---~- 219 (414)
T 3oiy_A 154 ASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRD----------LLN---F- 219 (414)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHH----------HHS---C-
T ss_pred ccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHH----------hhc---c-
Confidence 677777 66666532 2333357899999999 555433211100 000 0
Q ss_pred ccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccc
Q psy1604 423 LASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPK 502 (693)
Q Consensus 423 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (693)
..........++.+.+...
T Consensus 220 -----------------------------------------------------------~~~~~~~~~~~i~~~~~~~-- 238 (414)
T 3oiy_A 220 -----------------------------------------------------------TVGRLVSVARNITHVRISS-- 238 (414)
T ss_dssp -----------------------------------------------------------CSSCCCCCCCSEEEEEESS--
T ss_pred -----------------------------------------------------------CcCccccccccchheeecc--
Confidence 0000001112222333222
Q ss_pred hhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceE-EecCCCCHHHHHHHHHHHhcCCCcEEEE----eCc
Q psy1604 503 QQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATT-SIHGSRLQSQREQAIHDFKTKKMKVLVA----TAV 577 (693)
Q Consensus 503 ~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~-~lhg~~~~~~R~~~~~~F~~g~~~ILVa----T~v 577 (693)
.+...|.++++. .+.++||||+++..++.++..|+..++.+. .+||+ +|+ ++.|++|+.+|||| |++
T Consensus 239 -~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~ 310 (414)
T 3oiy_A 239 -RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGK 310 (414)
T ss_dssp -CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCC
T ss_pred -CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCch
Confidence 355566666666 347899999999999999999999999998 89985 444 99999999999999 999
Q ss_pred ccccCCCCC-CCEEEEcCCC--CChhhhhhhhcccccCC----CcceEEEEeCCCCchHHHHHHHHHHH
Q psy1604 578 ASRGLDIKG-IRHVINYDLP--QEIDEYVHRIGRTGRVG----NKGRATSFYDPDQDGAIAKDLVRILE 639 (693)
Q Consensus 578 ~~~GiDip~-v~~VI~~d~p--~s~~~y~Qr~GRagR~G----~~G~~~~~~~~~~d~~~~~~l~~~l~ 639 (693)
+++|||+|+ +++||+||+| .++.+|+||+||+||.| ++|.+++|+ ++....+.+.+.+.
T Consensus 311 ~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~---~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 311 LTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 376 (414)
T ss_dssp CCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred hhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE---ccHHHHHHHHHHhc
Confidence 999999999 9999999999 99999999999999998 589999999 35667777888777
No 19
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.8e-44 Score=419.44 Aligned_cols=406 Identities=18% Similarity=0.197 Sum_probs=227.0
Q ss_pred HHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHH
Q psy1604 210 VKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQ 289 (693)
Q Consensus 210 ~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q 289 (693)
...+..+||..|+|+|.++++.+++++++++++|||+|||++|++|+++.+...+. ..+.++|||+||++|+.|
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~lvl~Pt~~L~~Q 76 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ------GQKGKVVFFANQIPVYEQ 76 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT------TCCCCEEEECSSHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc------CCCCeEEEEECCHHHHHH
Confidence 34567789999999999999999999999999999999999999999998876542 223579999999999999
Q ss_pred HHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCc-CCCceeEEEEccchhhhhCCchHH
Q psy1604 290 IHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRI-SLASVRFVVLDEADRMLDMGFLGD 368 (693)
Q Consensus 290 ~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~-~l~~~~~lVlDEah~l~~~~~~~~ 368 (693)
|.+.+.++....++++..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+...+..
T Consensus 77 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~ 156 (696)
T 2ykg_A 77 NKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNM 156 (696)
T ss_dssp HHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHH
T ss_pred HHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHH
Confidence 9999999987778999999998876666666667899999999999999998776 789999999999999876653333
Q ss_pred HHH-Hhcc-CCCCCCCCcceEEeeccCch-------h-HHhhhhhhh------hhchhhhHHHHhhccccccceeEEEec
Q psy1604 369 IQH-VMQH-STMPDVANRQTLMFSATFPE-------T-IQKKGCNIL------VATMGRLKDILDRGRISLASVRFVVLD 432 (693)
Q Consensus 369 i~~-i~~~-~~~~~~~~~q~lllSAT~~~-------~-~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~d 432 (693)
+.. .+.. ......+..++++||||+.. . +..+..... ..........+... .......+....
T Consensus 157 i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~-~~~p~~~~~~~~ 235 (696)
T 2ykg_A 157 IMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQV-VYKPQKFFRKVE 235 (696)
T ss_dssp HHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHH-SCCCEEEEEECC
T ss_pred HHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhh-cCCCceeEEecC
Confidence 321 1111 11112246799999999862 1 111110000 00000000000000 000000000000
Q ss_pred hhhh-hhhcCcc---cchhHHhhcccCCccccccceeecccCchhhh-------c-------------------------
Q psy1604 433 EADR-MLDMGFL---GDIQHVMQHSTMPDVANRQTLMFSATFPETIQ-------K------------------------- 476 (693)
Q Consensus 433 ~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~-------~------------------------- 476 (693)
.... .+...+. ........ ....................... .
T Consensus 236 ~~~~~~fs~~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (696)
T 2ykg_A 236 SRISDKFKYIIAQLMRDTESLAK-RICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTS 314 (696)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHH-HHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHH-HHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Confidence 0000 0000000 00000000 00000000000000000000000 0
Q ss_pred ------ceEEEEeec----------------ccccccceeEEEEE----------------ccchhHHHHHHHHHhcc--
Q psy1604 477 ------NYIFIAVGI----------------IGGASTDVVQTILE----------------VPKQQKKKKLLELLREK-- 516 (693)
Q Consensus 477 ------~~~~~~~~~----------------~~~~~~~~~~~~~~----------------~~~~~k~~~L~~~l~~~-- 516 (693)
..+.+.... .......+.+.+.. .....|...|.+++...
T Consensus 315 ~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~ 394 (696)
T 2ykg_A 315 HLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYH 394 (696)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 000000000 00000000000000 01346777888887764
Q ss_pred --CCCcEEEEecChHhHHHHHHHHhhCC----CceEEe--------cCCCCHHHHHHHHHHHhc-CCCcEEEEeCccccc
Q psy1604 517 --DEDGVIVFVSTIRNADFIACYLCETE----IATTSI--------HGSRLQSQREQAIHDFKT-KKMKVLVATAVASRG 581 (693)
Q Consensus 517 --~~~kvLVF~~s~~~a~~l~~~L~~~~----~~v~~l--------hg~~~~~~R~~~~~~F~~-g~~~ILVaT~v~~~G 581 (693)
...++||||+++..++.+++.|...+ +.+..+ |++|++.+|.+++++|++ |+.+|||||+++++|
T Consensus 395 ~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~G 474 (696)
T 2ykg_A 395 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 474 (696)
T ss_dssp TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC
T ss_pred cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcC
Confidence 67899999999999999999999987 788888 569999999999999998 999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 582 LDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 582 iDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
||+|++++||+||+|+|+.+|+||+|| ||. +.|.|++++...
T Consensus 475 iDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~ 516 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNA 516 (696)
T ss_dssp ---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCH
T ss_pred CcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCC
Confidence 999999999999999999999999999 998 889999999743
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.3e-44 Score=405.36 Aligned_cols=380 Identities=18% Similarity=0.194 Sum_probs=208.5
Q ss_pred CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 217 NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
+..+|+|+|.++++.+++++++++++|||+|||++|++|+++.+...+. ..++++|||+||++|+.||.+.+.+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc------cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999998876542 2356899999999999999999999
Q ss_pred HhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCc-CCCceeEEEEccchhhhhCCchHHHHHH-hc
Q psy1604 297 YAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRI-SLASVRFVVLDEADRMLDMGFLGDIQHV-MQ 374 (693)
Q Consensus 297 ~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~-~l~~~~~lVlDEah~l~~~~~~~~i~~i-~~ 374 (693)
+....++++..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.+++..+... +.
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 157 (556)
T 4a2p_A 78 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 157 (556)
T ss_dssp HHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHH
T ss_pred HhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHH
Confidence 987778899999999877766666777899999999999999998877 7899999999999999887755444322 21
Q ss_pred cCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhccc
Q psy1604 375 HSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHST 454 (693)
Q Consensus 375 ~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 454 (693)
.......+..++++||||++..-......++ .....+...+....+ ....... ..........
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~-~~i~~l~~~l~~~~~-------~~~~~~~--------~~~~~~~~~~- 220 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNAKNIEETI-EHICSLCSYLDIQAI-------STVRENI--------QELQRFMNKP- 220 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTCSSHHHHH-HHHHHHHHHHTCSEE-------ECCCTTH--------HHHHHHTCCC-
T ss_pred hhhcccCCCCeEEEEeCCcccCchhhHHHHH-HHHHHHHHhcCCeEe-------cchhcch--------HHHHhcCCCC-
Confidence 1111112467999999998532111000000 000011111110000 0000000 0000000000
Q ss_pred CCccccccceeecccCch---------------hhhcce-----EEEEeeccccc-------------------------
Q psy1604 455 MPDVANRQTLMFSATFPE---------------TIQKNY-----IFIAVGIIGGA------------------------- 489 (693)
Q Consensus 455 ~~~~~~~~~~~~~~t~~~---------------~l~~~~-----~~~~~~~~~~~------------------------- 489 (693)
...........++ .+...+ ........+..
T Consensus 221 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (556)
T 4a2p_A 221 -----EIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEES 295 (556)
T ss_dssp -----CEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHH
T ss_pred -----ceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhH
Confidence 0000000000000 000000 00000000000
Q ss_pred -------------------------------ccceeEE-------------------------------EEEccchhHHH
Q psy1604 490 -------------------------------STDVVQT-------------------------------ILEVPKQQKKK 507 (693)
Q Consensus 490 -------------------------------~~~~~~~-------------------------------~~~~~~~~k~~ 507 (693)
...+... ........|..
T Consensus 296 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~ 375 (556)
T 4a2p_A 296 RICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLE 375 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHH
Confidence 0000000 00001245777
Q ss_pred HHHHHHhc----cCCCcEEEEecChHhHHHHHHHHhhC------------CCceEEecCCCCHHHHHHHHHHHhc-CCCc
Q psy1604 508 KLLELLRE----KDEDGVIVFVSTIRNADFIACYLCET------------EIATTSIHGSRLQSQREQAIHDFKT-KKMK 570 (693)
Q Consensus 508 ~L~~~l~~----~~~~kvLVF~~s~~~a~~l~~~L~~~------------~~~v~~lhg~~~~~~R~~~~~~F~~-g~~~ 570 (693)
.|.+++.. ....++||||+++..++.+++.|.+. |.....+||+|++.+|.+++++|++ |+++
T Consensus 376 ~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~ 455 (556)
T 4a2p_A 376 ELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 455 (556)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CC
T ss_pred HHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE
Confidence 77777764 56789999999999999999999875 4556677888999999999999999 9999
Q ss_pred EEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCC
Q psy1604 571 VLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQ 626 (693)
Q Consensus 571 ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~ 626 (693)
|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. ++|.+++|+++.+
T Consensus 456 vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 456 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp EEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHH
T ss_pred EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 99999999999999999999999999999999999999 999 8999999998643
No 21
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5e-43 Score=396.37 Aligned_cols=377 Identities=21% Similarity=0.235 Sum_probs=233.7
Q ss_pred CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 219 TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.+|+|+|.++++.+++++++++++|||+|||++|++|+++.+...+. ..++++|||+||++|+.||.+.+.++.
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC------GQKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------CCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 37999999999999999999999999999999999999998877542 235689999999999999999999998
Q ss_pred cCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCc-CCCceeEEEEccchhhhhCCchHHHH-HHhcc-
Q psy1604 299 YSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRI-SLASVRFVVLDEADRMLDMGFLGDIQ-HVMQH- 375 (693)
Q Consensus 299 ~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~-~l~~~~~lVlDEah~l~~~~~~~~i~-~i~~~- 375 (693)
...++++..++|+.........+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+.+..+. ..+..
T Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 156 (555)
T 3tbk_A 77 ERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHK 156 (555)
T ss_dssp HTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhh
Confidence 8888999999999877766666777899999999999999988777 78899999999999998776444332 22221
Q ss_pred CCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccC
Q psy1604 376 STMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTM 455 (693)
Q Consensus 376 ~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 455 (693)
......+..++++||||++.......... ......+...+....+. ........+ .....
T Consensus 157 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~-------~~~~~~~~l--------~~~~~---- 216 (555)
T 3tbk_A 157 LGESRDPLPQVVGLTASVGVGDAKTAEEA-MQHICKLCAALDASVIA-------TVRDNVAEL--------EQVVY---- 216 (555)
T ss_dssp TSSCCSCCCEEEEEESCCCCTTCCSHHHH-HHHHHHHHHHTTCSEEE-------CCCSCHHHH--------HTTCC----
T ss_pred hccccCCCCeEEEEecCcccCccccHHHH-HHHHHHHHHhcCCeeee-------ccccCHHHH--------HhhcC----
Confidence 11222346799999999854211100000 00000111111100000 000000000 00000
Q ss_pred CccccccceeecccCchhhh--------------cceEE-------EEeecccc--------------------------
Q psy1604 456 PDVANRQTLMFSATFPETIQ--------------KNYIF-------IAVGIIGG-------------------------- 488 (693)
Q Consensus 456 ~~~~~~~~~~~~~t~~~~l~--------------~~~~~-------~~~~~~~~-------------------------- 488 (693)
.+...........++.+. ...+. ......+.
T Consensus 217 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (555)
T 3tbk_A 217 --KPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEES 294 (555)
T ss_dssp --CCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHH
T ss_pred --CCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHH
Confidence 000000000000000000 00000 00000000
Q ss_pred -------------------------------------cccceeE-EE-----------------------EEccchhHHH
Q psy1604 489 -------------------------------------ASTDVVQ-TI-----------------------LEVPKQQKKK 507 (693)
Q Consensus 489 -------------------------------------~~~~~~~-~~-----------------------~~~~~~~k~~ 507 (693)
....... .+ .......|..
T Consensus 295 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 374 (555)
T 3tbk_A 295 RVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLR 374 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHH
Confidence 0000000 00 0001245677
Q ss_pred HHHHHHhc----cCCCcEEEEecChHhHHHHHHHHhhCC------------CceEEecCCCCHHHHHHHHHHHhc-CCCc
Q psy1604 508 KLLELLRE----KDEDGVIVFVSTIRNADFIACYLCETE------------IATTSIHGSRLQSQREQAIHDFKT-KKMK 570 (693)
Q Consensus 508 ~L~~~l~~----~~~~kvLVF~~s~~~a~~l~~~L~~~~------------~~v~~lhg~~~~~~R~~~~~~F~~-g~~~ 570 (693)
.|.+++.. ....++||||+++..++.++..|...+ .....+||+|++.+|.+++++|++ |+++
T Consensus 375 ~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~ 454 (555)
T 3tbk_A 375 DLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN 454 (555)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS
T ss_pred HHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee
Confidence 77777765 467899999999999999999998763 344556679999999999999999 9999
Q ss_pred EEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 571 VLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 571 ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. +.|.+++|+++.
T Consensus 455 vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 507 (555)
T 3tbk_A 455 ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSA 507 (555)
T ss_dssp EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCH
T ss_pred EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCC
Confidence 99999999999999999999999999999999999999 999 999999999854
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-44 Score=426.22 Aligned_cols=386 Identities=19% Similarity=0.173 Sum_probs=260.1
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCe
Q psy1604 197 IESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPE 276 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~ 276 (693)
...|..+++++.+...+....+..|+|+|.++++.++++++++++||||||||++|++|++..+.. +.+
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----------g~r 229 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQR 229 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-----------TCE
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-----------CCe
Confidence 346777778777777777777778999999999999999999999999999999999999988733 348
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEcc
Q psy1604 277 VIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 356 (693)
Q Consensus 277 vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 356 (693)
+||++||++|+.|+++.+.++.. .+..++|+... ...++|+|+||++|.+++.++...+.++++|||||
T Consensus 230 vlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDE 298 (1108)
T 3l9o_A 230 VIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDE 298 (1108)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhh
Confidence 99999999999999999999864 46667777653 34689999999999999988877788999999999
Q ss_pred chhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 357 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
||++.++++...+..++.... ...|+++||||+|+... +. .++.... .........+....
T Consensus 299 aH~l~d~~rg~~~e~ii~~l~----~~~qvl~lSATipn~~e-~a------------~~l~~~~--~~~~~vi~~~~rp~ 359 (1108)
T 3l9o_A 299 VHYMRDKERGVVWEETIILLP----DKVRYVFLSATIPNAME-FA------------EWICKIH--SQPCHIVYTNFRPT 359 (1108)
T ss_dssp GGGTTSHHHHHHHHHHHHHSC----TTSEEEEEECSCSSCHH-HH------------HHHHHHT--CSCEEEEEECCCSS
T ss_pred hhhccccchHHHHHHHHHhcC----CCceEEEEcCCCCCHHH-HH------------HHHHhhc--CCCeEEEecCCCcc
Confidence 999999999888888887643 47899999999876422 11 1111000 00000000000000
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeec-ccccccceeEEE-----EEccchhHHHHHH
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGI-IGGASTDVVQTI-----LEVPKQQKKKKLL 510 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~k~~~L~ 510 (693)
-+...+... .........+.........+...+ .......... ............ .......++..++
T Consensus 360 pl~~~~~~~-----~~~~~~~~vd~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li 433 (1108)
T 3l9o_A 360 PLQHYLFPA-----HGDGIYLVVDEKSTFREENFQKAM-ASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIV 433 (1108)
T ss_dssp CEEEEEEET-----TSSCCEEEEETTTEECHHHHHHHH-TTC-----------------------------CHHHHHHHH
T ss_pred cceEEEeec-----CCcceeeeeccccchhhhhHHHHH-HHHHhhhcccccccccccccccccccccccccchhHHHHHH
Confidence 000000000 000000000000000000000000 0000000000 000000000000 0000134555666
Q ss_pred HHHhccCCCcEEEEecChHhHHHHHHHHhhCCCc---------------------------------------eEEecCC
Q psy1604 511 ELLREKDEDGVIVFVSTIRNADFIACYLCETEIA---------------------------------------TTSIHGS 551 (693)
Q Consensus 511 ~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~---------------------------------------v~~lhg~ 551 (693)
..+......++||||+++..|+.++..|...++. +..+||+
T Consensus 434 ~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~ 513 (1108)
T 3l9o_A 434 KMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSG 513 (1108)
T ss_dssp HHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSC
T ss_pred HHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCC
Confidence 6666677789999999999999999998653322 7899999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCC--------ChhhhhhhhcccccCC--CcceEEEE
Q psy1604 552 RLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQ--------EIDEYVHRIGRTGRVG--NKGRATSF 621 (693)
Q Consensus 552 ~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~--------s~~~y~Qr~GRagR~G--~~G~~~~~ 621 (693)
|++.+|+.+++.|++|.++|||||+++++|||+|++++||+++.|+ |+.+|+||+|||||.| ..|.|+++
T Consensus 514 l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill 593 (1108)
T 3l9o_A 514 LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 593 (1108)
T ss_dssp SCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEE
Confidence 9999999999999999999999999999999999999999877643 6777999999999999 68999999
Q ss_pred eCCCCchH
Q psy1604 622 YDPDQDGA 629 (693)
Q Consensus 622 ~~~~~d~~ 629 (693)
+.+..+..
T Consensus 594 ~~~~~~~~ 601 (1108)
T 3l9o_A 594 IDEKMEPQ 601 (1108)
T ss_dssp ECCCCCHH
T ss_pred ecCCcCHH
Confidence 98765443
No 23
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=8.4e-43 Score=391.96 Aligned_cols=382 Identities=18% Similarity=0.184 Sum_probs=262.8
Q ss_pred hCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 215 KSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 215 ~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
..|| +|||+|..++|.+++|+ ++.++||+|||++|++|++...+. ++.++||+||++||.|+++++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-----------g~~vlVltptreLA~qd~e~~ 144 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-----------GKGVHVVTVNEYLASRDAEQM 144 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHH
Confidence 4799 99999999999999998 999999999999999999855432 236999999999999999999
Q ss_pred HHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcC------CcCCCceeEEEEccchhhh-hCC--
Q psy1604 295 CKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRG------RISLASVRFVVLDEADRML-DMG-- 364 (693)
Q Consensus 295 ~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEah~l~-~~~-- 364 (693)
..+....++++.+++||.+...+ ....+++|+|+||++| .++|... .+.+..+.++||||||+|+ +++
T Consensus 145 ~~l~~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~t 222 (844)
T 1tf5_A 145 GKIFEFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEART 222 (844)
T ss_dssp HHHHHHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTC
T ss_pred HHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcccc
Confidence 99998889999999999876543 3345799999999999 6776543 3567889999999999998 664
Q ss_pred -------------chHHHHHHhccCCC-----CCCCCcceE-----------------EeeccCchhHHhhhhhhhhhch
Q psy1604 365 -------------FLGDIQHVMQHSTM-----PDVANRQTL-----------------MFSATFPETIQKKGCNILVATM 409 (693)
Q Consensus 365 -------------~~~~i~~i~~~~~~-----~~~~~~q~l-----------------llSAT~~~~~~~~~~~~~~~~~ 409 (693)
|+..+..++..+.. .....+|++ ++|||++.....+.
T Consensus 223 plIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~-------- 294 (844)
T 1tf5_A 223 PLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHIN-------- 294 (844)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHH--------
T ss_pred chhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHH--------
Confidence 66788888876431 012367777 88999764332221
Q ss_pred hhhHHHHhhccccccceeE-------EEechhhhhh--hcCcccchhHHhh-cccCCcccccc----------------c
Q psy1604 410 GRLKDILDRGRISLASVRF-------VVLDEADRML--DMGFLGDIQHVMQ-HSTMPDVANRQ----------------T 463 (693)
Q Consensus 410 ~~l~~~l~~~~~~~~~~~~-------~~~d~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~----------------~ 463 (693)
..+....+...+..+ ..+|+.-... ...+..-+...+. .....-..... .
T Consensus 295 ----~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl 370 (844)
T 1tf5_A 295 ----QALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKL 370 (844)
T ss_dssp ----HHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEE
T ss_pred ----HHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhh
Confidence 111111111111222 2222211100 0001111111100 00000000000 0
Q ss_pred eeecccCch---hhhcceEEEEeecccccccce---eEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHH
Q psy1604 464 LMFSATFPE---TIQKNYIFIAVGIIGGASTDV---VQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIA 535 (693)
Q Consensus 464 ~~~~~t~~~---~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~ 535 (693)
.-.+.|... .+...|-. .+-......+.. .+.+.......|...|.+.+.. ....++||||+|++.++.|+
T Consensus 371 ~GmTGTa~te~~e~~~iY~l-~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls 449 (844)
T 1tf5_A 371 AGMTGTAKTEEEEFRNIYNM-QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELIS 449 (844)
T ss_dssp EEEESCCGGGHHHHHHHHCC-CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHH
T ss_pred ccCCcccchhHHHHHHHhCC-ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence 001111111 11111110 000011111111 1224456778899999888865 35678999999999999999
Q ss_pred HHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCC--------CCCEEEEcCCCCChhhhhhhhc
Q psy1604 536 CYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIK--------GIRHVINYDLPQEIDEYVHRIG 607 (693)
Q Consensus 536 ~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip--------~v~~VI~~d~p~s~~~y~Qr~G 607 (693)
..|...|+++..+||++.+.+|..+.+.|+.| .|+|||++++||+||+ ++.+||+|++|.|...|+||+|
T Consensus 450 ~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~G 527 (844)
T 1tf5_A 450 KLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRG 527 (844)
T ss_dssp HHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHT
T ss_pred HHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcC
Confidence 99999999999999999888887777667665 6999999999999999 7889999999999999999999
Q ss_pred ccccCCCcceEEEEeCCCCc
Q psy1604 608 RTGRVGNKGRATSFYDPDQD 627 (693)
Q Consensus 608 RagR~G~~G~~~~~~~~~~d 627 (693)
||||.|.+|.+++|++++++
T Consensus 528 RTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 528 RSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TSSGGGCCEEEEEEEETTSS
T ss_pred ccccCCCCCeEEEEecHHHH
Confidence 99999999999999997764
No 24
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-42 Score=403.38 Aligned_cols=352 Identities=22% Similarity=0.255 Sum_probs=260.5
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhh-hhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCe
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPA-GLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPE 276 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~-il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~ 276 (693)
.+|++++|++.+.+.+++.||.+|+|+|.++++. +.+++++++++|||||||++|.+++++.+... +.+
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~ 77 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----------GGK 77 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----------CCe
Confidence 4689999999999999999999999999999999 77899999999999999999999999887643 247
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEcc
Q psy1604 277 VIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 356 (693)
Q Consensus 277 vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 356 (693)
++|++|+++|+.|+++.++++.. .++++...+|+...... ....++|+|+||++|..++.+....++++++||+||
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDE 153 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECS
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEec
Confidence 99999999999999999965543 46788888887665432 123689999999999999988766689999999999
Q ss_pred chhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 357 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
||.+.+..+...+..++.... +.|+++||||+++. ..++. ++....+.. ..+
T Consensus 154 ~H~l~~~~~~~~l~~i~~~~~-----~~~ii~lSATl~n~-~~~~~------------~l~~~~~~~-~~r--------- 205 (715)
T 2va8_A 154 LHYLNDPERGPVVESVTIRAK-----RRNLLALSATISNY-KQIAK------------WLGAEPVAT-NWR--------- 205 (715)
T ss_dssp GGGGGCTTTHHHHHHHHHHHH-----TSEEEEEESCCTTH-HHHHH------------HHTCEEEEC-CCC---------
T ss_pred hhhcCCcccchHHHHHHHhcc-----cCcEEEEcCCCCCH-HHHHH------------HhCCCccCC-CCC---------
Confidence 999988888888888776543 68999999998752 22222 111100000 000
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK 516 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 516 (693)
..+-........ .....+.+.. .+....... ....+...+.+.+.
T Consensus 206 --------------------~~~l~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~-- 250 (715)
T 2va8_A 206 --------------------PVPLIEGVIYPE-----RKKKEYNVIF-------KDNTTKKVH-GDDAIIAYTLDSLS-- 250 (715)
T ss_dssp --------------------SSCEEEEEEEEC-----SSTTEEEEEE-------TTSCEEEEE-SSSHHHHHHHHHHT--
T ss_pred --------------------CCCceEEEEecC-----Ccccceeeec-------Ccchhhhcc-cchHHHHHHHHHHh--
Confidence 000000000000 0000000000 000000010 12344555555554
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCC------------------------------------CceEEecCCCCHHHHHHH
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETE------------------------------------IATTSIHGSRLQSQREQA 560 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~------------------------------------~~v~~lhg~~~~~~R~~~ 560 (693)
.++++||||++++.++.++..|.+.. ..+..+||+|++.+|..+
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 56899999999999999999997642 248999999999999999
Q ss_pred HHHHhcCCCcEEEEeCcccccCCCCCCCEEEE----cC-------CCCChhhhhhhhcccccCC--CcceEEEEeCCCC
Q psy1604 561 IHDFKTKKMKVLVATAVASRGLDIKGIRHVIN----YD-------LPQEIDEYVHRIGRTGRVG--NKGRATSFYDPDQ 626 (693)
Q Consensus 561 ~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~----~d-------~p~s~~~y~Qr~GRagR~G--~~G~~~~~~~~~~ 626 (693)
++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.| ..|.|++++++.+
T Consensus 331 ~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 331 EEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999999999999999999999999 99 8999999999999999998 4799999997543
No 25
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.9e-43 Score=409.64 Aligned_cols=381 Identities=18% Similarity=0.191 Sum_probs=215.4
Q ss_pred hCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 215 KSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 215 ~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
.+|+..|+|+|.++++.+++++++++++|||+|||++|++|+++.+...+. ..++++|||+||++|+.||.+.+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~Lvl~Pt~~L~~Q~~~~~ 316 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVF 316 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHH
Confidence 347889999999999999999999999999999999999999998876532 23568999999999999999999
Q ss_pred HHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCc-CCCceeEEEEccchhhhhCCchHHHHH-H
Q psy1604 295 CKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRI-SLASVRFVVLDEADRMLDMGFLGDIQH-V 372 (693)
Q Consensus 295 ~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~-~l~~~~~lVlDEah~l~~~~~~~~i~~-i 372 (693)
.++....++++..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.+.+..+.. .
T Consensus 317 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~ 396 (797)
T 4a2q_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRY 396 (797)
T ss_dssp HHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHH
T ss_pred HHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHH
Confidence 99987778999999999877776677778899999999999999988777 788999999999999987765444332 2
Q ss_pred hccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhc
Q psy1604 373 MQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQH 452 (693)
Q Consensus 373 ~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 452 (693)
+........+..++++||||+...-..-.... ......+...+....+. ...... .........
T Consensus 397 ~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~-~~~i~~l~~~L~~~~i~-------~~~~~~--------~~l~~~~~~ 460 (797)
T 4a2q_A 397 LEQKFNSASQLPQILGLTASVGVGNAKNIEET-IEHICSLCSYLDIQAIS-------TVRENI--------QELQRFMNK 460 (797)
T ss_dssp HHHHHTTCCCCCEEEEEESCCCCTTCCSHHHH-HHHHHHHHHHHTCSEEE-------CCCTTH--------HHHHHHSCC
T ss_pred HHHhhccCCCCCeEEEEcCCccccccccHHHH-HHHHHHHHHhcCCcEEe-------cccccH--------HHHHHhcCC
Confidence 22111112346799999999853110000000 00000111111100000 000000 000000000
Q ss_pred ccCCccccccceeecccCchh--------------hhcceEE------EEeecccc-------------------ccc--
Q psy1604 453 STMPDVANRQTLMFSATFPET--------------IQKNYIF------IAVGIIGG-------------------AST-- 491 (693)
Q Consensus 453 ~~~~~~~~~~~~~~~~t~~~~--------------l~~~~~~------~~~~~~~~-------------------~~~-- 491 (693)
.. ..........++. +...++. ......+. ...
T Consensus 461 ~~------~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (797)
T 4a2q_A 461 PE------IDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEE 534 (797)
T ss_dssp CC------CEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHH
T ss_pred Cc------eEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccch
Confidence 00 0000000000000 0000000 00000000 000
Q ss_pred -----------------------------------ceeEE-------------------------------EEEccchhH
Q psy1604 492 -----------------------------------DVVQT-------------------------------ILEVPKQQK 505 (693)
Q Consensus 492 -----------------------------------~~~~~-------------------------------~~~~~~~~k 505 (693)
.+.+. ........|
T Consensus 535 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K 614 (797)
T 4a2q_A 535 ESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPK 614 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChH
Confidence 00000 000012457
Q ss_pred HHHHHHHHhc----cCCCcEEEEecChHhHHHHHHHHhhC------------CCceEEecCCCCHHHHHHHHHHHhc-CC
Q psy1604 506 KKKLLELLRE----KDEDGVIVFVSTIRNADFIACYLCET------------EIATTSIHGSRLQSQREQAIHDFKT-KK 568 (693)
Q Consensus 506 ~~~L~~~l~~----~~~~kvLVF~~s~~~a~~l~~~L~~~------------~~~v~~lhg~~~~~~R~~~~~~F~~-g~ 568 (693)
...|.++|.. ....++||||+++..++.++++|++. |.....+||+|++.+|.+++++|++ |.
T Consensus 615 ~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~ 694 (797)
T 4a2q_A 615 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD 694 (797)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------C
T ss_pred HHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCC
Confidence 7777777764 56789999999999999999999873 4566778999999999999999999 99
Q ss_pred CcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 569 MKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 569 ~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
++|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. ++|.|++|+++.
T Consensus 695 ~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~ 749 (797)
T 4a2q_A 695 NRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (797)
T ss_dssp CSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCH
T ss_pred ceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCC
Confidence 9999999999999999999999999999999999999999 999 899999999854
No 26
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2e-42 Score=402.26 Aligned_cols=343 Identities=20% Similarity=0.257 Sum_probs=262.9
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhh-hhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE
Q psy1604 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPA-GLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV 277 (693)
Q Consensus 199 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~-il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v 277 (693)
+|++++|++.+.+.+++.||.+|+|+|.++++. +.+++++++++|||||||++|.+++++.+... +.++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~~ 71 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----------GGKA 71 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----------CSEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----------CCEE
Confidence 488999999999999999999999999999998 88999999999999999999999999888643 2479
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccc
Q psy1604 278 IICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEA 357 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEa 357 (693)
||++|+++|+.|+++.++++.. .++++..++|+...... ....++|+|+||++|..++.+....++++++||+|||
T Consensus 72 l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 72 VYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEI 147 (720)
T ss_dssp EEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETG
T ss_pred EEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECC
Confidence 9999999999999999976643 36788888887654432 2346899999999999998887666889999999999
Q ss_pred hhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhh
Q psy1604 358 DRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRM 437 (693)
Q Consensus 358 h~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~ 437 (693)
|++.+..+...+..++.... .+.|+++||||+++. ..+...+ ....+.. ..+
T Consensus 148 H~l~~~~r~~~~~~ll~~l~----~~~~ii~lSATl~n~-~~~~~~l------------~~~~~~~-~~r---------- 199 (720)
T 2zj8_A 148 HLIGSRDRGATLEVILAHML----GKAQIIGLSATIGNP-EELAEWL------------NAELIVS-DWR---------- 199 (720)
T ss_dssp GGGGCTTTHHHHHHHHHHHB----TTBEEEEEECCCSCH-HHHHHHT------------TEEEEEC-CCC----------
T ss_pred cccCCCcccHHHHHHHHHhh----cCCeEEEEcCCcCCH-HHHHHHh------------CCcccCC-CCC----------
Confidence 99998888888888876543 268999999998752 2222111 1000000 000
Q ss_pred hhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccC
Q psy1604 438 LDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKD 517 (693)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~ 517 (693)
..+....... ...+.. .+... . ....+...+.+.+. .
T Consensus 200 -------------------p~~l~~~~~~---------~~~~~~---------~~~~~--~--~~~~~~~~~~~~~~--~ 236 (720)
T 2zj8_A 200 -------------------PVKLRRGVFY---------QGFVTW---------EDGSI--D--RFSSWEELVYDAIR--K 236 (720)
T ss_dssp -------------------SSEEEEEEEE---------TTEEEE---------TTSCE--E--ECSSTTHHHHHHHH--T
T ss_pred -------------------CCcceEEEEe---------CCeeec---------cccch--h--hhhHHHHHHHHHHh--C
Confidence 0000000000 000000 00000 0 01233445555554 4
Q ss_pred CCcEEEEecChHhHHHHHHHHhhC---------------------------------CCceEEecCCCCHHHHHHHHHHH
Q psy1604 518 EDGVIVFVSTIRNADFIACYLCET---------------------------------EIATTSIHGSRLQSQREQAIHDF 564 (693)
Q Consensus 518 ~~kvLVF~~s~~~a~~l~~~L~~~---------------------------------~~~v~~lhg~~~~~~R~~~~~~F 564 (693)
++++||||++++.++.++..|.+. ...+..+||+|++.+|..+++.|
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 688999999999999999988653 12489999999999999999999
Q ss_pred hcCCCcEEEEeCcccccCCCCCCCEEEE----cC----CCCChhhhhhhhcccccCC--CcceEEEEeCCCC
Q psy1604 565 KTKKMKVLVATAVASRGLDIKGIRHVIN----YD----LPQEIDEYVHRIGRTGRVG--NKGRATSFYDPDQ 626 (693)
Q Consensus 565 ~~g~~~ILVaT~v~~~GiDip~v~~VI~----~d----~p~s~~~y~Qr~GRagR~G--~~G~~~~~~~~~~ 626 (693)
++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 317 ~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 317 RKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp HTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred HCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999999999999999998 77 5899999999999999998 5799999998654
No 27
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.2e-42 Score=402.99 Aligned_cols=346 Identities=21% Similarity=0.256 Sum_probs=257.1
Q ss_pred ccccCC--CCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCe
Q psy1604 199 SFESAG--LREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPE 276 (693)
Q Consensus 199 ~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~ 276 (693)
+|++++ |++.+.+.+++.||.+|+|+|.++++.+++++++++++|||||||++|.+++++.+.. +.+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~ 70 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----------GGK 70 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----------TCC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----------CCc
Confidence 467777 8999999999999999999999999999999999999999999999999999988753 237
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEcc
Q psy1604 277 VIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 356 (693)
Q Consensus 277 vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 356 (693)
+||++|+++|+.|+++.++++. ..++++...+|+...... ....++|+|+||++|..++.+....++++++||+||
T Consensus 71 ~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE 146 (702)
T 2p6r_A 71 SLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDE 146 (702)
T ss_dssp EEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETT
T ss_pred EEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEee
Confidence 9999999999999999996554 347888888887654432 123689999999999999988766688999999999
Q ss_pred chhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 357 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
||.+.+.++...+..++..... ..++.|+++||||+++ ...++..+ .... +..+.
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~-~~~~~~ii~lSATl~n-~~~~~~~l------------~~~~--------~~~~~--- 201 (702)
T 2p6r_A 147 IHLLDSEKRGATLEILVTKMRR-MNKALRVIGLSATAPN-VTEIAEWL------------DADY--------YVSDW--- 201 (702)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHH-HCTTCEEEEEECCCTT-HHHHHHHT------------TCEE--------EECCC---
T ss_pred eeecCCCCcccHHHHHHHHHHh-cCcCceEEEECCCcCC-HHHHHHHh------------CCCc--------ccCCC---
Confidence 9999988888777776654321 1237899999999875 22222211 1000 00000
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhcc
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREK 516 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 516 (693)
...+...... ....+..... ...... ...+...+.+.+.
T Consensus 202 -------------------r~~~l~~~~~---------~~~~~~~~~~--------~~~~~~---~~~~~~~~~~~~~-- 240 (702)
T 2p6r_A 202 -------------------RPVPLVEGVL---------CEGTLELFDG--------AFSTSR---RVKFEELVEECVA-- 240 (702)
T ss_dssp -------------------CSSCEEEEEE---------CSSEEEEEET--------TEEEEE---ECCHHHHHHHHHH--
T ss_pred -------------------CCccceEEEe---------eCCeeeccCc--------chhhhh---hhhHHHHHHHHHh--
Confidence 0000000000 0000000000 000000 0114455555554
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhC------------------------------CCceEEecCCCCHHHHHHHHHHHhc
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCET------------------------------EIATTSIHGSRLQSQREQAIHDFKT 566 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~------------------------------~~~v~~lhg~~~~~~R~~~~~~F~~ 566 (693)
..+++||||++++.++.++..|.+. +..+..+||+|++.+|..+++.|++
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 5688999999999999999988652 1357889999999999999999999
Q ss_pred CCCcEEEEeCcccccCCCCCCCEEEE----cC---CCCChhhhhhhhcccccCC--CcceEEEEeCCC
Q psy1604 567 KKMKVLVATAVASRGLDIKGIRHVIN----YD---LPQEIDEYVHRIGRTGRVG--NKGRATSFYDPD 625 (693)
Q Consensus 567 g~~~ILVaT~v~~~GiDip~v~~VI~----~d---~p~s~~~y~Qr~GRagR~G--~~G~~~~~~~~~ 625 (693)
|.++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.| ..|.|++++...
T Consensus 321 g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 388 (702)
T 2p6r_A 321 GNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 388 (702)
T ss_dssp TSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred CCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCc
Confidence 99999999999999999999999998 76 7899999999999999998 479999999854
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.3e-41 Score=374.52 Aligned_cols=358 Identities=24% Similarity=0.249 Sum_probs=251.2
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.|+|+|.++++.++++ ++++++|||+|||++++++++..+... +.++||++|+++|+.||.+++.++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~----------~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY----------GGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHS----------CSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcC----------CCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 7999999999999998 999999999999999999998877521 34799999999999999999999975
Q ss_pred CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCC
Q psy1604 300 SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMP 379 (693)
Q Consensus 300 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~ 379 (693)
....++..++|+....... .....++|+|+||+.|.+.+....+.+.++++|||||||++.+...+..+...+....
T Consensus 78 ~~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~-- 154 (494)
T 1wp9_A 78 LPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA-- 154 (494)
T ss_dssp SCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC--
T ss_pred cchhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC--
Confidence 5556888888887765443 3445689999999999999988878889999999999999987655555555443321
Q ss_pred CCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccc
Q psy1604 380 DVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVA 459 (693)
Q Consensus 380 ~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (693)
...++++||||+......+...+ ..+. .. .+. ...... ....... .
T Consensus 155 --~~~~~l~lTaTp~~~~~~~~~l~---------~~l~---~~--~~~--~~~~~~--------~~~~~~~--------~ 200 (494)
T 1wp9_A 155 --KNPLVIGLTASPGSTPEKIMEVI---------NNLG---IE--HIE--YRSENS--------PDVRPYV--------K 200 (494)
T ss_dssp --SSCCEEEEESCSCSSHHHHHHHH---------HHTT---CC--EEE--ECCTTS--------TTTGGGC--------C
T ss_pred --CCCeEEEEecCCCCCcHHHHHHH---------HhcC---hh--eee--ccCCCc--------HHHHHhc--------C
Confidence 36789999999874322221111 0000 00 000 000000 0000000 0
Q ss_pred cccceeecccCchhhhc-------------------ceEE-----EEe--------------ecc-cc------------
Q psy1604 460 NRQTLMFSATFPETIQK-------------------NYIF-----IAV--------------GII-GG------------ 488 (693)
Q Consensus 460 ~~~~~~~~~t~~~~l~~-------------------~~~~-----~~~--------------~~~-~~------------ 488 (693)
..........++..... .+.. +.. ... ..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (494)
T 1wp9_A 201 GIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMAL 280 (494)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHH
T ss_pred CCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHH
Confidence 00000111111111000 0000 000 000 00
Q ss_pred ------------c----------------------------ccceeEEE-------EEccchhHHHHHHHHHhc----cC
Q psy1604 489 ------------A----------------------------STDVVQTI-------LEVPKQQKKKKLLELLRE----KD 517 (693)
Q Consensus 489 ------------~----------------------------~~~~~~~~-------~~~~~~~k~~~L~~~l~~----~~ 517 (693)
. ...+.+.. .......|...|.+++.. ..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 360 (494)
T 1wp9_A 281 KLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQ 360 (494)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCC
Confidence 0 00000000 000234577777887776 57
Q ss_pred CCcEEEEecChHhHHHHHHHHhhCCCceEEecC--------CCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCE
Q psy1604 518 EDGVIVFVSTIRNADFIACYLCETEIATTSIHG--------SRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRH 589 (693)
Q Consensus 518 ~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg--------~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~ 589 (693)
..++||||+++..++.+++.|...++.+..+|| +++..+|.+++++|++|+.+|||||+++++|||+|++++
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~ 440 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDL 440 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCE
T ss_pred CCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCE
Confidence 889999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCC
Q psy1604 590 VINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQ 626 (693)
Q Consensus 590 VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~ 626 (693)
||+||+|+|+..|+||+||+||.|+ |.++.|++++.
T Consensus 441 Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 441 VVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp EEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred EEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 9999999999999999999999998 99999998653
No 29
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=7.3e-42 Score=405.50 Aligned_cols=387 Identities=18% Similarity=0.207 Sum_probs=214.9
Q ss_pred hCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 215 KSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 215 ~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
..++..|+|+|.++++.+++++++++++|||+|||++|++|+++.+...+. ..+.++|||+||++|+.||++.+
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~------~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS------SCCCCEEEECSSHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHH
Confidence 347889999999999999999999999999999999999999987765432 22557999999999999999999
Q ss_pred HHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCc-CCCceeEEEEccchhhhhCCchHHHHH-H
Q psy1604 295 CKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRI-SLASVRFVVLDEADRMLDMGFLGDIQH-V 372 (693)
Q Consensus 295 ~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~-~l~~~~~lVlDEah~l~~~~~~~~i~~-i 372 (693)
.++....++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++...+.+..+.. +
T Consensus 317 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~ 396 (936)
T 4a2w_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRY 396 (936)
T ss_dssp HHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHH
Confidence 99988778999999999877666666667899999999999999988776 788999999999999987754443332 2
Q ss_pred hccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhc
Q psy1604 373 MQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQH 452 (693)
Q Consensus 373 ~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 452 (693)
+........+..++++||||+...-....... ......+...+....+. ...... .........
T Consensus 397 ~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~-~~~i~~L~~~L~~~~i~-------~~~~~~--------~~l~~~~~~ 460 (936)
T 4a2w_A 397 LEQKFNSASQLPQILGLTASVGVGNAKNIEET-IEHICSLCSYLDIQAIS-------TVRENI--------QELQRFMNK 460 (936)
T ss_dssp HHHHHTTCSCCCEEEEEESCCCCTTCCSHHHH-HHHHHHHHHHHTCSEEE-------CCCSSH--------HHHHHHSCC
T ss_pred HHHhhccCCCcCeEEEecCCcccccchhHHHH-HHHHHHHHHhcCCceee-------cccccH--------HHHHHhccC
Confidence 22111112346799999999853110000000 00000111111110000 000000 000000000
Q ss_pred ccCC--ccccccceeecccCc---hh---hhcceEE------EEeecccc-------------------cc---------
Q psy1604 453 STMP--DVANRQTLMFSATFP---ET---IQKNYIF------IAVGIIGG-------------------AS--------- 490 (693)
Q Consensus 453 ~~~~--~~~~~~~~~~~~t~~---~~---l~~~~~~------~~~~~~~~-------------------~~--------- 490 (693)
.... ....+..-.+...+. .. +....+. ......+. ..
T Consensus 461 p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~ 540 (936)
T 4a2w_A 461 PEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICR 540 (936)
T ss_dssp CCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHH
T ss_pred CcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 0000 000000000000000 00 0000000 00000000 00
Q ss_pred ----------------------------cceeEEE-------------------------------EEccchhHHHHHHH
Q psy1604 491 ----------------------------TDVVQTI-------------------------------LEVPKQQKKKKLLE 511 (693)
Q Consensus 491 ----------------------------~~~~~~~-------------------------------~~~~~~~k~~~L~~ 511 (693)
..+.+.+ .......|...|.+
T Consensus 541 ~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~ 620 (936)
T 4a2w_A 541 ALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVC 620 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 0000000 00012456777777
Q ss_pred HHhc----cCCCcEEEEecChHhHHHHHHHHhhC------------CCceEEecCCCCHHHHHHHHHHHhc-CCCcEEEE
Q psy1604 512 LLRE----KDEDGVIVFVSTIRNADFIACYLCET------------EIATTSIHGSRLQSQREQAIHDFKT-KKMKVLVA 574 (693)
Q Consensus 512 ~l~~----~~~~kvLVF~~s~~~a~~l~~~L~~~------------~~~v~~lhg~~~~~~R~~~~~~F~~-g~~~ILVa 574 (693)
+|.. ....++||||++++.++.|+++|.+. |.....+||+|++.+|.+++++|++ |+++||||
T Consensus 621 lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVa 700 (936)
T 4a2w_A 621 ILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIA 700 (936)
T ss_dssp HHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEE
T ss_pred HHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEE
Confidence 7765 45789999999999999999999876 5556677899999999999999999 99999999
Q ss_pred eCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 575 TAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 575 T~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
|+++++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.+++|++..
T Consensus 701 T~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~ 749 (936)
T 4a2w_A 701 TSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (936)
T ss_dssp ECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCH
T ss_pred eCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCC
Confidence 9999999999999999999999999999999999 999 899999999754
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=8.7e-42 Score=407.50 Aligned_cols=330 Identities=24% Similarity=0.322 Sum_probs=253.8
Q ss_pred HHHHHH-hCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHH
Q psy1604 209 LVKNLK-KSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELV 287 (693)
Q Consensus 209 l~~~l~-~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La 287 (693)
+.+.++ ..|| +|+|+|.++++.+++++|++++||||||||++|+++++..+. .++++|||+||++|+
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-----------~~~~~Lil~PtreLa 134 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLV 134 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-----------cCCeEEEEechHHHH
Confidence 334443 3677 699999999999999999999999999999988888887662 245799999999999
Q ss_pred HHHHHHHHHHhcCCCeeEEEEeCCCCh---HHHHHHHhcC-CcEEEechhhHHHHHhcCCcCCCceeEEEEccchhh---
Q psy1604 288 MQIHEVACKYAYSSVLKICLHYGGASS---MHFNRQLEKG-CNILVATMGRLKDILDRGRISLASVRFVVLDEADRM--- 360 (693)
Q Consensus 288 ~Q~~~~~~~~~~~~~l~~~~~~gg~~~---~~~~~~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l--- 360 (693)
.|+++.+.++. ..++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++
T Consensus 135 ~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~ 211 (1104)
T 4ddu_A 135 KQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKA 211 (1104)
T ss_dssp HHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTS
T ss_pred HHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccc
Confidence 99999999987 678899999999887 4455556555 99999999999888774 66789999999999754
Q ss_pred -------hh-CCchHH-HHHHhccC-------CCCCCCCcceEEeecc-CchhHHhhhhhhhhhchhhhHHHHhhccccc
Q psy1604 361 -------LD-MGFLGD-IQHVMQHS-------TMPDVANRQTLMFSAT-FPETIQKKGCNILVATMGRLKDILDRGRISL 423 (693)
Q Consensus 361 -------~~-~~~~~~-i~~i~~~~-------~~~~~~~~q~lllSAT-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 423 (693)
++ ++|... +..++... .++.....|+++|||| .|..+....... .+.
T Consensus 212 ~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~----------~l~------ 275 (1104)
T 4ddu_A 212 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRD----------LLN------ 275 (1104)
T ss_dssp SHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHH----------HTC------
T ss_pred cccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhc----------cee------
Confidence 45 788877 67776532 1222357899999999 455433211000 000
Q ss_pred cceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccch
Q psy1604 424 ASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQ 503 (693)
Q Consensus 424 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (693)
+.+........++.+.+...
T Consensus 276 ---------------------------------------------------------i~v~~~~~~~~~i~~~~~~~--- 295 (1104)
T 4ddu_A 276 ---------------------------------------------------------FTVGRLVSVARNITHVRISS--- 295 (1104)
T ss_dssp ---------------------------------------------------------CCCCBCCCCCCCEEEEEESC---
T ss_pred ---------------------------------------------------------EEeccCCCCcCCceeEEEec---
Confidence 00000011122233333333
Q ss_pred hHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceE-EecCCCCHHHHHHHHHHHhcCCCcEEEE----eCcc
Q psy1604 504 QKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATT-SIHGSRLQSQREQAIHDFKTKKMKVLVA----TAVA 578 (693)
Q Consensus 504 ~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~-~lhg~~~~~~R~~~~~~F~~g~~~ILVa----T~v~ 578 (693)
.|...|.+++.. .++++||||+++..++.++..|+..++.+. .+||+ |.+ +++|++|+.+|||| |+++
T Consensus 296 ~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdvl 368 (1104)
T 4ddu_A 296 RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKL 368 (1104)
T ss_dssp CCHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHH
T ss_pred CHHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCee
Confidence 355666666666 348999999999999999999999999998 99993 555 99999999999999 9999
Q ss_pred cccCCCCC-CCEEEEcCCCC------------------------------------------------------------
Q psy1604 579 SRGLDIKG-IRHVINYDLPQ------------------------------------------------------------ 597 (693)
Q Consensus 579 ~~GiDip~-v~~VI~~d~p~------------------------------------------------------------ 597 (693)
++|||||+ |++|||||+|.
T Consensus 369 arGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l 448 (1104)
T 4ddu_A 369 TRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGV 448 (1104)
T ss_dssp CCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSS
T ss_pred EecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceE
Confidence 99999999 99999999998
Q ss_pred ------------ChhhhhhhhcccccCCC----cceEEEEeCCCCchHHHHHHHHHHH
Q psy1604 598 ------------EIDEYVHRIGRTGRVGN----KGRATSFYDPDQDGAIAKDLVRILE 639 (693)
Q Consensus 598 ------------s~~~y~Qr~GRagR~G~----~G~~~~~~~~~~d~~~~~~l~~~l~ 639 (693)
+..+|+||+|||||.|. +|.+++|+ +|....+.|.+.++
T Consensus 449 ~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~---~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 449 VVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 503 (1104)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred EecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE---ecHHHHHHHHHHHh
Confidence 77899999999999764 45666666 36677788888776
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=394.28 Aligned_cols=366 Identities=20% Similarity=0.201 Sum_probs=248.2
Q ss_pred HhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHH
Q psy1604 214 KKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293 (693)
Q Consensus 214 ~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 293 (693)
..++|. |+|+|.++++.+++++++++++|||||||++|.++++..+.. +.++||++||++|+.|+++.
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-----------g~rvL~l~PtkaLa~Q~~~~ 148 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYRE 148 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-----------CCeEEEECChHHHHHHHHHH
Confidence 345664 999999999999999999999999999999999999887732 34899999999999999999
Q ss_pred HHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHh
Q psy1604 294 ACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVM 373 (693)
Q Consensus 294 ~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~ 373 (693)
+.++.. .+..++|+.... ..++|+|+||++|.+++.++...+.++++|||||||++.++++...+..++
T Consensus 149 l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il 217 (1010)
T 2xgj_A 149 LLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETI 217 (1010)
T ss_dssp HHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHH
Confidence 998764 566777776532 357999999999999988877788999999999999999998888888887
Q ss_pred ccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcc
Q psy1604 374 QHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHS 453 (693)
Q Consensus 374 ~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 453 (693)
.... ...|+++||||+++... ++. ++.... .........+....-+...+... ...
T Consensus 218 ~~l~----~~~~il~LSATi~n~~e-~a~------------~l~~~~--~~~~~vi~~~~rp~pl~~~~~~~-----~~~ 273 (1010)
T 2xgj_A 218 ILLP----DKVRYVFLSATIPNAME-FAE------------WICKIH--SQPCHIVYTNFRPTPLQHYLFPA-----HGD 273 (1010)
T ss_dssp HHSC----TTCEEEEEECCCTTHHH-HHH------------HHHHHH--TSCEEEEEECCCSSCEEEEEEET-----TSS
T ss_pred HhcC----CCCeEEEEcCCCCCHHH-HHH------------HHHhhc--CCCeEEEecCCCcccceEEEEec-----CCc
Confidence 6542 47899999999976422 111 111000 00000000000000000000000 000
Q ss_pred cCCccccccceeecccCchhhhcceEEEEeeccccc--ccceeEEEEEc-----cchhHHHHHHHHHhccCCCcEEEEec
Q psy1604 454 TMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGA--STDVVQTILEV-----PKQQKKKKLLELLREKDEDGVIVFVS 526 (693)
Q Consensus 454 ~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~k~~~L~~~l~~~~~~kvLVF~~ 526 (693)
......+.........+...+. .+....+..... ........... .....+..++..+......++||||+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~ 351 (1010)
T 2xgj_A 274 GIYLVVDEKSTFREENFQKAMA--SISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSF 351 (1010)
T ss_dssp CCEEEECTTCCBCHHHHHHHHH--TCC------------------------------CHHHHHHHHHHHHTCCSEEEEES
T ss_pred ceeeeeccccccchHHHHHHHH--HHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEEC
Confidence 0000000000000000000000 000000000000 00000000000 00334555666666667779999999
Q ss_pred ChHhHHHHHHHHhhCCCc---------------------------------------eEEecCCCCHHHHHHHHHHHhcC
Q psy1604 527 TIRNADFIACYLCETEIA---------------------------------------TTSIHGSRLQSQREQAIHDFKTK 567 (693)
Q Consensus 527 s~~~a~~l~~~L~~~~~~---------------------------------------v~~lhg~~~~~~R~~~~~~F~~g 567 (693)
++..|+.++..|...++. +..+||+|++.+|+.+++.|++|
T Consensus 352 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G 431 (1010)
T 2xgj_A 352 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG 431 (1010)
T ss_dssp SHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcC
Confidence 999999999999765432 78899999999999999999999
Q ss_pred CCcEEEEeCcccccCCCCCCCEEEE----cCC----CCChhhhhhhhcccccCCC--cceEEEEeCCCCch
Q psy1604 568 KMKVLVATAVASRGLDIKGIRHVIN----YDL----PQEIDEYVHRIGRTGRVGN--KGRATSFYDPDQDG 628 (693)
Q Consensus 568 ~~~ILVaT~v~~~GiDip~v~~VI~----~d~----p~s~~~y~Qr~GRagR~G~--~G~~~~~~~~~~d~ 628 (693)
.++|||||+++++|||+|++++||+ ||. |.|+.+|+||+|||||.|+ .|.|++|+++..+.
T Consensus 432 ~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~ 502 (1010)
T 2xgj_A 432 FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 502 (1010)
T ss_dssp CCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCH
T ss_pred CCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCH
Confidence 9999999999999999999999999 999 8999999999999999997 59999999866443
No 32
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.2e-41 Score=379.17 Aligned_cols=381 Identities=16% Similarity=0.184 Sum_probs=236.1
Q ss_pred CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 216 SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 216 ~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
.|. +|+|+|..+++.+++|+ ++.++||+|||++|++|++...+. ++.++||+||++||.|+++++.
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-----------g~~vlVltPTreLA~Q~~e~~~ 136 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAENNR 136 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-----------SSCCEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 354 89999999999999998 999999999999999999865532 2368999999999999999999
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcCC------cCCCceeEEEEccchhhh-hCC---
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRGR------ISLASVRFVVLDEADRML-DMG--- 364 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~l~-~~~--- 364 (693)
.+....++++.+++||.+.. .+....+++|+|+||++| .++|..+. +.++++.++||||||+|+ +.+
T Consensus 137 ~l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tp 214 (853)
T 2fsf_A 137 PLFEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTP 214 (853)
T ss_dssp HHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCE
T ss_pred HHHHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccc
Confidence 99988899999999998764 334455799999999999 78887542 567889999999999999 543
Q ss_pred ------------chHHHHHHhccCCCC----------------CCCCcceE------------------------Eeecc
Q psy1604 365 ------------FLGDIQHVMQHSTMP----------------DVANRQTL------------------------MFSAT 392 (693)
Q Consensus 365 ------------~~~~i~~i~~~~~~~----------------~~~~~q~l------------------------llSAT 392 (693)
|+..+..++..+... ....+|++ ++|||
T Consensus 215 LIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat 294 (853)
T 2fsf_A 215 LIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPA 294 (853)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred ccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcc
Confidence 566677776654210 01244543 66777
Q ss_pred CchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEE-------echhh-hhhh-cCcccchhHHhh-cccC---Cccc
Q psy1604 393 FPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVV-------LDEAD-RMLD-MGFLGDIQHVMQ-HSTM---PDVA 459 (693)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-------~d~~~-~~~~-~~~~~~~~~~~~-~~~~---~~~~ 459 (693)
.+.....+. ..+....+...+..|++ +|+.. ++.. ..+..-+...+. .... ....
T Consensus 295 ~~~~~~~i~------------~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~ 362 (853)
T 2fsf_A 295 NIMLMHHVT------------AALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQ 362 (853)
T ss_dssp --------------------------------------------------------------------------CCCCCE
T ss_pred cchHHHHHH------------HHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccccc
Confidence 543222110 00000011111111211 11100 0000 000000000000 0000 0000
Q ss_pred cccc-------------eeecccC---chhhhcceEEEEeecccccccce---eEEEEEccchhHHHHHHHHHhc--cCC
Q psy1604 460 NRQT-------------LMFSATF---PETIQKNYIFIAVGIIGGASTDV---VQTILEVPKQQKKKKLLELLRE--KDE 518 (693)
Q Consensus 460 ~~~~-------------~~~~~t~---~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~L~~~l~~--~~~ 518 (693)
.... .-.+.|. ...+.+.|-. .+-......+.. .+.+.......|...+.+.+.. ..+
T Consensus 363 tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l-~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~g 441 (853)
T 2fsf_A 363 TLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKL-DTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKG 441 (853)
T ss_dssp EEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCC-EEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred ccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCC-cEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCC
Confidence 0000 0001111 0111111111 111111111111 1224556778899999988865 456
Q ss_pred CcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCC-----------
Q psy1604 519 DGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGI----------- 587 (693)
Q Consensus 519 ~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v----------- 587 (693)
.++||||+|+..++.|+..|+..|+++.++||++.+.++..+.++|+.| .|+|||++++||+||+..
T Consensus 442 qpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~ 519 (853)
T 2fsf_A 442 QPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALE 519 (853)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCS
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcc
Confidence 7899999999999999999999999999999999888888888999988 699999999999999874
Q ss_pred --------------------------CEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCc
Q psy1604 588 --------------------------RHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQD 627 (693)
Q Consensus 588 --------------------------~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d 627 (693)
.+||+|++|.|...|.||+||+||.|.+|.++.|++.+++
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 520 NPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred cchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999987654
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.9e-41 Score=402.39 Aligned_cols=329 Identities=20% Similarity=0.267 Sum_probs=248.2
Q ss_pred HHHHH-hCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHH
Q psy1604 210 VKNLK-KSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVM 288 (693)
Q Consensus 210 ~~~l~-~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~ 288 (693)
.+.+. .+||. | |+|.++++.+++++|+++++|||||||+ |++|++..+... ++++|||+||++|+.
T Consensus 47 ~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~----------~~~~lil~PtreLa~ 113 (1054)
T 1gku_B 47 VEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK----------GKRCYVIFPTSLLVI 113 (1054)
T ss_dssp HHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT----------SCCEEEEESCHHHHH
T ss_pred HHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc----------CCeEEEEeccHHHHH
Confidence 34444 47999 9 9999999999999999999999999998 899999887643 347999999999999
Q ss_pred HHHHHHHHHhcCCCe----eEEEEeCCCChHHHH---HHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhh
Q psy1604 289 QIHEVACKYAYSSVL----KICLHYGGASSMHFN---RQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRML 361 (693)
Q Consensus 289 Q~~~~~~~~~~~~~l----~~~~~~gg~~~~~~~---~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~ 361 (693)
|+++.+.++....++ ++..++|+.+...+. ..+.. ++|+|+||++|.+++.+ +.++++|||||||+|+
T Consensus 114 Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 114 QAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhh
Confidence 999999999887777 889999998876642 33445 99999999999997764 6789999999999998
Q ss_pred hCCchHHHHHHhccCCCC-------CCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechh
Q psy1604 362 DMGFLGDIQHVMQHSTMP-------DVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEA 434 (693)
Q Consensus 362 ~~~~~~~i~~i~~~~~~~-------~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~ 434 (693)
+ +...+..++...... .....|++++|||++.. ..+...+.. .... +.
T Consensus 189 ~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~-------~~~~---i~------------ 243 (1054)
T 1gku_B 189 K--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFR-------QLLN---FD------------ 243 (1054)
T ss_dssp T--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHH-------HHHC---CC------------
T ss_pred h--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhh-------cceE---EE------------
Confidence 8 456666666543210 12367899999999876 433322210 0000 00
Q ss_pred hhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHh
Q psy1604 435 DRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLR 514 (693)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~ 514 (693)
+........++.+.+. ...|...|.++++
T Consensus 244 ------------------------------------------------v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~ 272 (1054)
T 1gku_B 244 ------------------------------------------------IGSSRITVRNVEDVAV---NDESISTLSSILE 272 (1054)
T ss_dssp ------------------------------------------------CSCCEECCCCEEEEEE---SCCCTTTTHHHHT
T ss_pred ------------------------------------------------ccCcccCcCCceEEEe---chhHHHHHHHHHh
Confidence 0000001111222222 2345556666776
Q ss_pred ccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEE----eCcccccCCCCCC-CE
Q psy1604 515 EKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVA----TAVASRGLDIKGI-RH 589 (693)
Q Consensus 515 ~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVa----T~v~~~GiDip~v-~~ 589 (693)
.. +.++||||++++.++.+++.|+.. +.+..+||++ .++++.|++|+.+|||| |+++++|||+|+| ++
T Consensus 273 ~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~ 345 (1054)
T 1gku_B 273 KL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRF 345 (1054)
T ss_dssp TS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCE
T ss_pred hc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccE
Confidence 54 578999999999999999999988 9999999998 47889999999999999 8999999999996 99
Q ss_pred EEEcCCC-----------------------------------------------------------------------CC
Q psy1604 590 VINYDLP-----------------------------------------------------------------------QE 598 (693)
Q Consensus 590 VI~~d~p-----------------------------------------------------------------------~s 598 (693)
||+||+| .+
T Consensus 346 VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 425 (1054)
T 1gku_B 346 AVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPD 425 (1054)
T ss_dssp EEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEEC
T ss_pred EEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCc
Confidence 9999999 78
Q ss_pred hhhhhhhhcccccCCCcc--eEEEEeCCCCchHHHHHHHHHHHH
Q psy1604 599 IDEYVHRIGRTGRVGNKG--RATSFYDPDQDGAIAKDLVRILEQ 640 (693)
Q Consensus 599 ~~~y~Qr~GRagR~G~~G--~~~~~~~~~~d~~~~~~l~~~l~~ 640 (693)
..+|+||+|||||.|+.| .+++|+..+ +......+.+.++.
T Consensus 426 ~~~yiQr~GRagR~g~~g~~~g~~~~~~~-d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 426 LRTYIQGSGRTSRLFAGGLTKGASFLLED-DSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHHHTTCCEETTEECCEEEEEECS-CHHHHHHHHHHHHT
T ss_pred HHHHhhhhchhhhccCCCCceEEEEEEec-CHHHHHHHHHHHhh
Confidence 999999999999988775 477777644 56677777777764
No 34
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.3e-41 Score=392.15 Aligned_cols=377 Identities=21% Similarity=0.260 Sum_probs=229.8
Q ss_pred CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHH-HHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQI-HEVACKY 297 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~-~~~~~~~ 297 (693)
..|+|+|.++++.+++++++++++|||+|||++|++|+++.+...... ....++|||+|+++|+.|| .+++.++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----TCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999887654211 1235799999999999999 9999998
Q ss_pred hcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHH------hcCCcCCCceeEEEEccchhhhhCCchHHHHH
Q psy1604 298 AYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDIL------DRGRISLASVRFVVLDEADRMLDMGFLGDIQH 371 (693)
Q Consensus 298 ~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l------~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~ 371 (693)
... .+++..++|+.........+...++|+|+||++|.+.+ ....+.+.++++|||||||++....++..+..
T Consensus 81 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~ 159 (699)
T 4gl2_A 81 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 159 (699)
T ss_dssp HTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHH
T ss_pred cCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHH
Confidence 765 47888899988766666666778999999999999988 44456788999999999999876554444333
Q ss_pred Hh-ccC---------CCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcC
Q psy1604 372 VM-QHS---------TMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG 441 (693)
Q Consensus 372 i~-~~~---------~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~ 441 (693)
.+ ... .....+..++++||||+........... ......+...+....+.... . ...
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~-~~~i~~l~~~l~~~~i~~~~-----~-~~~------ 226 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKA-EEHILKLCANLDAFTIKTVK-----E-NLD------ 226 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHH-HHHHHHHHHHHTCSCCCCCC-----T-THH------
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHH-HHHHHHHHhhcCCCEEEeec-----C-chH------
Confidence 22 110 0111135789999999875311000000 00000011111110000000 0 000
Q ss_pred cccchhHHhhcccCCccccccceeecccCc-----------hhhhcceEEEEeecccc----------------------
Q psy1604 442 FLGDIQHVMQHSTMPDVANRQTLMFSATFP-----------ETIQKNYIFIAVGIIGG---------------------- 488 (693)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~-----------~~l~~~~~~~~~~~~~~---------------------- 488 (693)
........ +............ ..+...+........+.
T Consensus 227 ---~l~~~~~~------p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 297 (699)
T 4gl2_A 227 ---QLKNQIQE------PCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKE 297 (699)
T ss_dssp ---HHHHHSCC------CEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTT
T ss_pred ---HHhhhcCC------CceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhh
Confidence 00000000 0000000000000 00000000000000000
Q ss_pred -----------------------------------------c-ccceeEEEEEcc-------------------------
Q psy1604 489 -----------------------------------------A-STDVVQTILEVP------------------------- 501 (693)
Q Consensus 489 -----------------------------------------~-~~~~~~~~~~~~------------------------- 501 (693)
. ............
T Consensus 298 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 377 (699)
T 4gl2_A 298 RVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPE 377 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCC
Confidence 0 000000000000
Q ss_pred -chhHHHHHHHHHhc----cC-CCcEEEEecChHhHHHHHHHHhhC------CCceEEecCC--------CCHHHHHHHH
Q psy1604 502 -KQQKKKKLLELLRE----KD-EDGVIVFVSTIRNADFIACYLCET------EIATTSIHGS--------RLQSQREQAI 561 (693)
Q Consensus 502 -~~~k~~~L~~~l~~----~~-~~kvLVF~~s~~~a~~l~~~L~~~------~~~v~~lhg~--------~~~~~R~~~~ 561 (693)
...|...|.++|.. .. ..++||||++++.++.+++.|.+. ++.+..+||+ |++.+|.+++
T Consensus 378 ~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~ 457 (699)
T 4gl2_A 378 YENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVI 457 (699)
T ss_dssp ----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHH
Confidence 11222233333332 34 789999999999999999999987 8999999999 9999999999
Q ss_pred HHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCC
Q psy1604 562 HDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQ 626 (693)
Q Consensus 562 ~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~ 626 (693)
++|++|+.+|||||+++++|||+|++++||+||+|+|+..|+||+||+||.| .+++++.+.+
T Consensus 458 ~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~~ 519 (699)
T 4gl2_A 458 SKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAHSG 519 (699)
T ss_dssp HHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEESS
T ss_pred HHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999976654 5555554433
No 35
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.3e-39 Score=365.14 Aligned_cols=381 Identities=15% Similarity=0.194 Sum_probs=262.7
Q ss_pred CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 216 SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 216 ~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
.|+ +|+++|..+++.+++|+ |+.++||+|||++|.+|++...+. +..++||+||++||.|.++++.
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----------g~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-----------GNGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-----------TSCEEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-----------CCCeEEEeCCHHHHHHHHHHHH
Confidence 588 99999999999999998 999999999999999999755543 2369999999999999999999
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcC------CcCCCceeEEEEccchhhh-hC----
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRG------RISLASVRFVVLDEADRML-DM---- 363 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~------~~~l~~~~~lVlDEah~l~-~~---- 363 (693)
.+....++++.+++||.+... +....+++|+|+||++| .++|..+ .+.+..+.++||||||+|+ |.
T Consensus 174 ~l~~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartP 251 (922)
T 1nkt_A 174 RVHRFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTP 251 (922)
T ss_dssp HHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSC
T ss_pred HHHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccc
Confidence 999889999999999987543 33444699999999999 7888654 3567889999999999998 43
Q ss_pred -----------CchHHHHHHhccCCCC-----CCCCcceE-----------------EeeccCchhHHhhhhhhhhhchh
Q psy1604 364 -----------GFLGDIQHVMQHSTMP-----DVANRQTL-----------------MFSATFPETIQKKGCNILVATMG 410 (693)
Q Consensus 364 -----------~~~~~i~~i~~~~~~~-----~~~~~q~l-----------------llSAT~~~~~~~~~~~~~~~~~~ 410 (693)
+|+..+..++..+... ....+|++ ++|||.+.....+.
T Consensus 252 LiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~--------- 322 (922)
T 1nkt_A 252 LIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLN--------- 322 (922)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHH---------
T ss_pred eeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHH---------
Confidence 4778888888775310 01467888 88999765332221
Q ss_pred hhHHHHhhccccccceeE-------EEechhh-hhhh-cCcccchhHHhh-cccCCccccc----------------cce
Q psy1604 411 RLKDILDRGRISLASVRF-------VVLDEAD-RMLD-MGFLGDIQHVMQ-HSTMPDVANR----------------QTL 464 (693)
Q Consensus 411 ~l~~~l~~~~~~~~~~~~-------~~~d~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~~~----------------~~~ 464 (693)
..+....+...+..| +.+|+.. ++.. ..+..-+...+. .....-.... ...
T Consensus 323 ---~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~ 399 (922)
T 1nkt_A 323 ---NALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLA 399 (922)
T ss_dssp ---HHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEE
T ss_pred ---HHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhh
Confidence 111111111111222 2222210 0000 001111111110 0000000000 000
Q ss_pred eecccCch---hhhcceEEEEeecccccccce---eEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHH
Q psy1604 465 MFSATFPE---TIQKNYIFIAVGIIGGASTDV---VQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIAC 536 (693)
Q Consensus 465 ~~~~t~~~---~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~ 536 (693)
-.+.|... .+.+.|-. .+-......+.. .+.+.......|...+.+.+.. ..+.++||||+|++.++.|+.
T Consensus 400 GMTGTa~te~~Ef~~iY~l-~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~ 478 (922)
T 1nkt_A 400 GMTGTAQTEAAELHEIYKL-GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSR 478 (922)
T ss_dssp EEESCCGGGHHHHHHHHCC-EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred ccccCchhHHHHHHHHhCC-CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 01111111 11111111 111111111111 1224456677899988888865 356789999999999999999
Q ss_pred HHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCC-----------------------------
Q psy1604 537 YLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGI----------------------------- 587 (693)
Q Consensus 537 ~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v----------------------------- 587 (693)
.|++.|+++.++||++.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 479 ~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (922)
T 1nkt_A 479 QFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAW 556 (922)
T ss_dssp HHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHH
T ss_pred HHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHH
Confidence 9999999999999998888888888888887 699999999999999875
Q ss_pred -----------------------CEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCc
Q psy1604 588 -----------------------RHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQD 627 (693)
Q Consensus 588 -----------------------~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d 627 (693)
.+||+|++|.|...|.||+||+||.|.+|.++.|++.+++
T Consensus 557 ~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 557 HSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999987643
No 36
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=7.2e-39 Score=379.39 Aligned_cols=360 Identities=21% Similarity=0.218 Sum_probs=244.2
Q ss_pred CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 216 SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 216 ~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
++| .|+++|.++++.+++++++++++|||||||++|+++++..+. .+.++||++|+++|+.|+++.+.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-----------~g~~vlvl~PtraLa~Q~~~~l~ 103 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----------NMTKTIYTSPIKALSNQKFRDFK 103 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-----------TTCEEEEEESCGGGHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-----------cCCeEEEEeCCHHHHHHHHHHHH
Confidence 355 589999999999999999999999999999999998887653 23479999999999999999999
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhcc
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQH 375 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~ 375 (693)
++.. ++++..++|+.... ..++|+|+||++|.+.+......+.++++|||||||++.++++...+..++..
T Consensus 104 ~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~ 174 (997)
T 4a4z_A 104 ETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM 174 (997)
T ss_dssp TTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH
T ss_pred HHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHh
Confidence 8653 56788888876532 35799999999999999887777899999999999999999999888888876
Q ss_pred CCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccC
Q psy1604 376 STMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTM 455 (693)
Q Consensus 376 ~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 455 (693)
.. +..++++||||+++.. .++..+ .... ......+..+....-+. ..+......
T Consensus 175 l~----~~v~iIlLSAT~~n~~-ef~~~l------------~~~~--~~~~~vi~~~~r~~pl~-------~~v~~~~~~ 228 (997)
T 4a4z_A 175 LP----QHVKFILLSATVPNTY-EFANWI------------GRTK--QKNIYVISTPKRPVPLE-------INIWAKKEL 228 (997)
T ss_dssp SC----TTCEEEEEECCCTTHH-HHHHHH------------HHHH--TCCEEEEECSSCSSCEE-------EEEEETTEE
T ss_pred cc----cCCCEEEEcCCCCChH-HHHHHH------------hccc--CCceEEEecCCCCccce-------EEEecCCcc
Confidence 43 4789999999987643 222211 1100 00000000000000000 000000000
Q ss_pred CccccccceeecccCch---hhhcceEE-E-------Eeec-----------c----------------------cccc-
Q psy1604 456 PDVANRQTLMFSATFPE---TIQKNYIF-I-------AVGI-----------I----------------------GGAS- 490 (693)
Q Consensus 456 ~~~~~~~~~~~~~t~~~---~l~~~~~~-~-------~~~~-----------~----------------------~~~~- 490 (693)
..............+.. .+...... . ..+. . ....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~ 308 (997)
T 4a4z_A 229 IPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGS 308 (997)
T ss_dssp EEEECTTCCBCHHHHHHHHHHHC---------------------------------------------------------
T ss_pred hhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000000000000000 00000000 0 0000 0 0000
Q ss_pred cceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCC---------------------------
Q psy1604 491 TDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEI--------------------------- 543 (693)
Q Consensus 491 ~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~--------------------------- 543 (693)
..............+...+++.+......++||||+++..|+.++..|...++
T Consensus 309 ~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l 388 (997)
T 4a4z_A 309 NKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDL 388 (997)
T ss_dssp --------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTC
T ss_pred cccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcc
Confidence 00000111123456677888888888888999999999999999999977655
Q ss_pred ------------ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCC---------Chhhh
Q psy1604 544 ------------ATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQ---------EIDEY 602 (693)
Q Consensus 544 ------------~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~---------s~~~y 602 (693)
.+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|+ ..||+++.|+ |+.+|
T Consensus 389 ~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y 467 (997)
T 4a4z_A 389 PQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEF 467 (997)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHH
T ss_pred hhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHH
Confidence 4789999999999999999999999999999999999999999 6666666655 99999
Q ss_pred hhhhcccccCC--CcceEEEEeC
Q psy1604 603 VHRIGRTGRVG--NKGRATSFYD 623 (693)
Q Consensus 603 ~Qr~GRagR~G--~~G~~~~~~~ 623 (693)
+||+|||||.| ..|.|++++.
T Consensus 468 ~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 468 TQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHGGGCCTTTCSSEEEEEECC
T ss_pred hHHhcccccCCCCcceEEEEecC
Confidence 99999999998 5677777773
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-39 Score=372.72 Aligned_cols=317 Identities=18% Similarity=0.243 Sum_probs=235.1
Q ss_pred HHHHHHHHhCCCCCCCHHHHhhhhhhhcC------CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEE
Q psy1604 207 EILVKNLKKSNYTKPTPIQKYAIPAGLEG------RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIIC 280 (693)
Q Consensus 207 ~~l~~~l~~~g~~~p~~~Q~~ai~~il~g------~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil 280 (693)
+.+.+.+...+| .||++|+++++.++++ .+++++++||||||++|++|++..+.. +.+++|+
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-----------g~qvlvl 423 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----------GFQTAFM 423 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----------TSCEEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCeEEEE
Confidence 455555678899 9999999999999865 599999999999999999999988743 2479999
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHH---Hhc-CCcEEEechhhHHHHHhcCCcCCCceeEEEEcc
Q psy1604 281 APTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQ---LEK-GCNILVATMGRLKDILDRGRISLASVRFVVLDE 356 (693)
Q Consensus 281 ~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~---~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 356 (693)
+||++|+.|+++.+.++....++++..++|+......... +.. .++|+|+||+.+.+ .+.+.++++||+||
T Consensus 424 aPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 424 VPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDE 498 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEES
T ss_pred eCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecc
Confidence 9999999999999999988788999999999876654333 233 59999999998854 45688999999999
Q ss_pred chhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 357 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
+|++.... ...+ .......++++||||+.+........ .......+++
T Consensus 499 aHr~g~~q-----r~~l----~~~~~~~~vL~mSATp~p~tl~~~~~--------------------g~~~~s~i~~--- 546 (780)
T 1gm5_A 499 QHRFGVKQ-----REAL----MNKGKMVDTLVMSATPIPRSMALAFY--------------------GDLDVTVIDE--- 546 (780)
T ss_dssp CCCC----------CCC----CSSSSCCCEEEEESSCCCHHHHHHHT--------------------CCSSCEEECC---
T ss_pred cchhhHHH-----HHHH----HHhCCCCCEEEEeCCCCHHHHHHHHh--------------------CCcceeeeec---
Confidence 99863221 1111 11224689999999975543221100 0000000000
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhc-
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLRE- 515 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~- 515 (693)
.+.. ...+... .....+...+.+.+..
T Consensus 547 ---------------------------------~p~~----------------r~~i~~~---~~~~~~~~~l~~~i~~~ 574 (780)
T 1gm5_A 547 ---------------------------------MPPG----------------RKEVQTM---LVPMDRVNEVYEFVRQE 574 (780)
T ss_dssp ---------------------------------CCSS----------------CCCCEEC---CCCSSTHHHHHHHHHHH
T ss_pred ---------------------------------cCCC----------------CcceEEE---EeccchHHHHHHHHHHH
Confidence 0000 0000000 0112233444455543
Q ss_pred -cCCCcEEEEecCh--------HhHHHHHHHHhh---CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCC
Q psy1604 516 -KDEDGVIVFVSTI--------RNADFIACYLCE---TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLD 583 (693)
Q Consensus 516 -~~~~kvLVF~~s~--------~~a~~l~~~L~~---~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiD 583 (693)
..+.+++|||++. ..++.+++.|.+ .++.+..+||+|++.+|++++++|++|+.+|||||+++++|+|
T Consensus 575 l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GID 654 (780)
T 1gm5_A 575 VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGID 654 (780)
T ss_dssp TTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSC
T ss_pred HhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCcccc
Confidence 4567899999965 457888888987 4678999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCC-ChhhhhhhhcccccCCCcceEEEEeCC
Q psy1604 584 IKGIRHVINYDLPQ-EIDEYVHRIGRTGRVGNKGRATSFYDP 624 (693)
Q Consensus 584 ip~v~~VI~~d~p~-s~~~y~Qr~GRagR~G~~G~~~~~~~~ 624 (693)
+|++++||+++.|+ +.+.|.||+||+||.|++|.|++++.+
T Consensus 655 iP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 655 VPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp CTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 99999999999996 789999999999999999999999984
No 38
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=6.5e-40 Score=370.07 Aligned_cols=327 Identities=16% Similarity=0.124 Sum_probs=236.1
Q ss_pred CCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcC
Q psy1604 203 AGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAP 282 (693)
Q Consensus 203 ~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~P 282 (693)
+.+++.+.+.|... ...++|+|+.+++.+++++++++++|||||||++|++|+++.+... ++++||++|
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~----------~~~vLvl~P 223 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR----------RLRTLILAP 223 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEES
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCeEEEEcC
Confidence 33455555544433 4788999998999999999999999999999999999999988753 247999999
Q ss_pred CHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhh
Q psy1604 283 TRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 283 tr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~ 362 (693)
||+|+.|+++.+..+ .+. ..+.. .. .....+..+.++|.+.+...+... ..+.++++|||||||++ +
T Consensus 224 treLa~Qi~~~l~~~------~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~ 290 (618)
T 2whx_A 224 TRVVAAEMEEALRGL------PIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-D 290 (618)
T ss_dssp SHHHHHHHHHHTTTS------CEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-S
T ss_pred hHHHHHHHHHHhcCC------cee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-C
Confidence 999999999887632 222 11111 00 011224567788888887766554 35889999999999998 6
Q ss_pred CCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCc
Q psy1604 363 MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGF 442 (693)
Q Consensus 363 ~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~ 442 (693)
.++...+..++.... ..+.|+++||||++..+..+.... .
T Consensus 291 ~~~~~~~~~i~~~l~---~~~~q~il~SAT~~~~~~~~~~~~---------------------~---------------- 330 (618)
T 2whx_A 291 PCSVAARGYISTRVE---MGEAAAIFMTATPPGSTDPFPQSN---------------------S---------------- 330 (618)
T ss_dssp HHHHHHHHHHHHHHH---HTSCEEEEECSSCTTCCCSSCCCS---------------------S----------------
T ss_pred ccHHHHHHHHHHHhc---ccCccEEEEECCCchhhhhhhccC---------------------C----------------
Confidence 667767766665431 137899999999977543221100 0
Q ss_pred ccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEE
Q psy1604 443 LGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVI 522 (693)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvL 522 (693)
..+.+.... +. .+...++..+.. ..+++|
T Consensus 331 ----------------------------------~~~~v~~~~---------------~~-~~~~~ll~~l~~-~~~~~L 359 (618)
T 2whx_A 331 ----------------------------------PIEDIEREI---------------PE-RSWNTGFDWITD-YQGKTV 359 (618)
T ss_dssp ----------------------------------CEEEEECCC---------------CS-SCCSSSCHHHHH-CCSCEE
T ss_pred ----------------------------------ceeeecccC---------------CH-HHHHHHHHHHHh-CCCCEE
Confidence 000000000 00 000111222222 366899
Q ss_pred EEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEE------------
Q psy1604 523 VFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHV------------ 590 (693)
Q Consensus 523 VF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~V------------ 590 (693)
|||++++.++.+++.|++.++.+..+||+ +|.++++.|++|+.+|||||+++++||||| +++|
T Consensus 360 VF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~ 434 (618)
T 2whx_A 360 WFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVIL 434 (618)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEE
T ss_pred EEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceec
Confidence 99999999999999999999999999985 788899999999999999999999999997 9988
Q ss_pred --------EEcCCCCChhhhhhhhcccccCCC-cceEEEEeC--CCCchHHHHHHHHHHHHcCCCchhHH
Q psy1604 591 --------INYDLPQEIDEYVHRIGRTGRVGN-KGRATSFYD--PDQDGAIAKDLVRILEQAGQPVPEFL 649 (693)
Q Consensus 591 --------I~~d~p~s~~~y~Qr~GRagR~G~-~G~~~~~~~--~~~d~~~~~~l~~~l~~~~~~vp~~l 649 (693)
|+|+.|.+.++|+||+||+||.|. +|.|++|++ ..++...++.+.+.+......+|+.+
T Consensus 435 ~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~~ 504 (618)
T 2whx_A 435 TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 504 (618)
T ss_dssp CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred ccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcch
Confidence 777889999999999999999965 999999997 23456677778777777667766543
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.6e-39 Score=352.74 Aligned_cols=313 Identities=17% Similarity=0.187 Sum_probs=222.3
Q ss_pred CCCCCCHHHHhhhhhhhcCCCE-EEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 217 NYTKPTPIQKYAIPAGLEGRDL-MGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~g~~v-lv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
|+.+|+|+|+ ++|.+++++++ ++++|||||||++|++|++..+... ++++||++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR----------RLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc----------CCcEEEECCCHHHHHHHHHHhc
Confidence 6789999985 79999998887 8999999999999999999887653 2479999999999999999875
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhcc
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQH 375 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~ 375 (693)
. +.+......... ....+..|.++|++.+.+.+.+. ..+.++++|||||||++ +..+...+..+...
T Consensus 70 g------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 70 G------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp T------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred C------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 2 222211111100 11235679999999998877654 45789999999999987 33333333223221
Q ss_pred CCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccC
Q psy1604 376 STMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTM 455 (693)
Q Consensus 376 ~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 455 (693)
. ..++.|+++||||++......... ........
T Consensus 137 ~---~~~~~~~i~~SAT~~~~~~~~~~~---------------------~~~~~~~~----------------------- 169 (451)
T 2jlq_A 137 V---EMGEAAAIFMTATPPGSTDPFPQS---------------------NSPIEDIE----------------------- 169 (451)
T ss_dssp H---HTTSCEEEEECSSCTTCCCSSCCC---------------------SSCEEEEE-----------------------
T ss_pred h---cCCCceEEEEccCCCccchhhhcC---------------------CCceEecC-----------------------
Confidence 1 113689999999997643221100 00000000
Q ss_pred CccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHH
Q psy1604 456 PDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIA 535 (693)
Q Consensus 456 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~ 535 (693)
...+. ..+ . .+.+.+.. ..+++||||++++.++.++
T Consensus 170 ------------~~~p~---~~~------------------------~----~~~~~l~~-~~~~~lVF~~s~~~a~~l~ 205 (451)
T 2jlq_A 170 ------------REIPE---RSW------------------------N----TGFDWITD-YQGKTVWFVPSIKAGNDIA 205 (451)
T ss_dssp ------------CCCCS---SCC------------------------S----SSCHHHHH-CCSCEEEECSSHHHHHHHH
T ss_pred ------------ccCCc---hhh------------------------H----HHHHHHHh-CCCCEEEEcCCHHHHHHHH
Confidence 00000 000 0 01122222 3568999999999999999
Q ss_pred HHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcC--------------------C
Q psy1604 536 CYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYD--------------------L 595 (693)
Q Consensus 536 ~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d--------------------~ 595 (693)
+.|++.++.+..+|+++. +++++.|++|+.+|||||+++++|||||+ ++||+|| .
T Consensus 206 ~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~ 280 (451)
T 2jlq_A 206 NCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPI 280 (451)
T ss_dssp HHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEE
T ss_pred HHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccc
Confidence 999999999999999753 57899999999999999999999999999 9999999 9
Q ss_pred CCChhhhhhhhcccccCCC-cceEEEEeCCCC--chHHHHHHHHHHHHcCCCchhHH
Q psy1604 596 PQEIDEYVHRIGRTGRVGN-KGRATSFYDPDQ--DGAIAKDLVRILEQAGQPVPEFL 649 (693)
Q Consensus 596 p~s~~~y~Qr~GRagR~G~-~G~~~~~~~~~~--d~~~~~~l~~~l~~~~~~vp~~l 649 (693)
|.+.++|+||+||+||.|+ +|.|++|+..++ ...+.......+.....++|+++
T Consensus 281 p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 281 PVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred cCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 9999999999999999998 899988875322 22222223444555677777765
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.6e-38 Score=388.93 Aligned_cols=337 Identities=20% Similarity=0.220 Sum_probs=240.9
Q ss_pred CCCCCCHHHHhhhhhhh-cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 217 NYTKPTPIQKYAIPAGL-EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il-~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
||++|+++|.++++.++ +++|++++||||||||++|.+++++.+.+...........+.++||++|+++|+.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 89999999999999887 57899999999999999999999999986543222222456799999999999999999999
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC--cCCCceeEEEEccchhhhhCCchHHHHHHh
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR--ISLASVRFVVLDEADRMLDMGFLGDIQHVM 373 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~--~~l~~~~~lVlDEah~l~~~~~~~~i~~i~ 373 (693)
+.....++++..++|+...... ....++|+|+||+++..++.+.. ..++++++|||||+|.+.+ ..+..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8888888999999998765432 23568999999999866665432 2368899999999997765 5666666554
Q ss_pred ccCC---CCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHh
Q psy1604 374 QHST---MPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVM 450 (693)
Q Consensus 374 ~~~~---~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 450 (693)
.+.. .......|+|+||||+|+. ..++. |+..... ......+.
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~------------wL~~~~~----~~~~~~~~----------------- 277 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPNY-EDVAT------------FLRVDPA----KGLFYFDN----------------- 277 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTTH-HHHHH------------HTTCCHH----HHEEECCG-----------------
T ss_pred HHHHHHHHhCCCCCcEEEEecccCCH-HHHHH------------HhCCCCC----CCeEEECC-----------------
Confidence 3211 0012367999999999752 22222 2211000 00000000
Q ss_pred hcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccc---hh----HHHHHHHHHhc-cCCCcEE
Q psy1604 451 QHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPK---QQ----KKKKLLELLRE-KDEDGVI 522 (693)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----k~~~L~~~l~~-~~~~kvL 522 (693)
..+...+ .+.+..... .. ....+.+.+.+ ...+++|
T Consensus 278 ----------------------~~RPvpL--------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~L 321 (1724)
T 4f92_B 278 ----------------------SFRPVPL--------------EQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL 321 (1724)
T ss_dssp ----------------------GGCSSCE--------------EEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEE
T ss_pred ----------------------CCccCcc--------------EEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 0000000 000000000 01 11222333333 4567899
Q ss_pred EEecChHhHHHHHHHHhhC-------------------------------------CCceEEecCCCCHHHHHHHHHHHh
Q psy1604 523 VFVSTIRNADFIACYLCET-------------------------------------EIATTSIHGSRLQSQREQAIHDFK 565 (693)
Q Consensus 523 VF~~s~~~a~~l~~~L~~~-------------------------------------~~~v~~lhg~~~~~~R~~~~~~F~ 565 (693)
|||++++.|+.+++.|.+. ...+.++||+|++.+|..+++.|+
T Consensus 322 VF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~ 401 (1724)
T 4f92_B 322 VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA 401 (1724)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHH
Confidence 9999999999888877431 234789999999999999999999
Q ss_pred cCCCcEEEEeCcccccCCCCCCCEEEE----cCC------CCChhhhhhhhcccccCCC--cceEEEEeCCCCc
Q psy1604 566 TKKMKVLVATAVASRGLDIKGIRHVIN----YDL------PQEIDEYVHRIGRTGRVGN--KGRATSFYDPDQD 627 (693)
Q Consensus 566 ~g~~~ILVaT~v~~~GiDip~v~~VI~----~d~------p~s~~~y~Qr~GRagR~G~--~G~~~~~~~~~~d 627 (693)
+|.++|||||+++++|||+|..++||. |+. |.++.+|.||+|||||.|. .|.++++..+++.
T Consensus 402 ~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 402 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGEL 475 (1724)
T ss_dssp TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTC
T ss_pred CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhH
Confidence 999999999999999999999999985 543 4689999999999999874 6899998876544
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=8.6e-37 Score=366.87 Aligned_cols=322 Identities=19% Similarity=0.174 Sum_probs=238.1
Q ss_pred CCCHHHHHHHH-hCCCCCCCHHHHhhhhhhhc----CC--CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCe
Q psy1604 204 GLREILVKNLK-KSNYTKPTPIQKYAIPAGLE----GR--DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPE 276 (693)
Q Consensus 204 ~l~~~l~~~l~-~~g~~~p~~~Q~~ai~~il~----g~--~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~ 276 (693)
.+++...+.+. .++|. |||+|.++++.+++ ++ +++++++||+|||++|+++++..+. .+.+
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-----------~g~~ 654 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-----------NHKQ 654 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-----------TTCE
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-----------hCCe
Confidence 34555555554 45664 79999999999986 55 8999999999999999998887653 2348
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHH---Hhc-CCcEEEechhhHHHHHhcCCcCCCceeEE
Q psy1604 277 VIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQ---LEK-GCNILVATMGRLKDILDRGRISLASVRFV 352 (693)
Q Consensus 277 vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~---~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~l 352 (693)
++|++||++|+.|+++.+.++....++++..+.+.......... +.. .++|+|+||+.|. ..+.+.++++|
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lv 729 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLL 729 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceE
Confidence 99999999999999999998877777888888877665544333 333 5999999998663 34678999999
Q ss_pred EEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEec
Q psy1604 353 VLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLD 432 (693)
Q Consensus 353 VlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d 432 (693)
||||||++.. ....++.... .+.++++||||+++.........+ .... .+.
T Consensus 730 IiDEaH~~g~-----~~~~~l~~l~----~~~~vl~lSATp~p~~l~~~~~~~------------------~~~~--~i~ 780 (1151)
T 2eyq_A 730 IVDEEHRFGV-----RHKERIKAMR----ANVDILTLTATPIPRTLNMAMSGM------------------RDLS--IIA 780 (1151)
T ss_dssp EEESGGGSCH-----HHHHHHHHHH----TTSEEEEEESSCCCHHHHHHHTTT------------------SEEE--ECC
T ss_pred EEechHhcCh-----HHHHHHHHhc----CCCCEEEEcCCCChhhHHHHHhcC------------------CCce--EEe
Confidence 9999999632 2233332211 367899999998654332211110 0000 000
Q ss_pred hhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHH
Q psy1604 433 EADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLEL 512 (693)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~ 512 (693)
+ .......+...+...........+...
T Consensus 781 ------------------------------------~----------------~~~~r~~i~~~~~~~~~~~i~~~il~~ 808 (1151)
T 2eyq_A 781 ------------------------------------T----------------PPARRLAVKTFVREYDSMVVREAILRE 808 (1151)
T ss_dssp ------------------------------------C----------------CCCBCBCEEEEEEECCHHHHHHHHHHH
T ss_pred ------------------------------------c----------------CCCCccccEEEEecCCHHHHHHHHHHH
Confidence 0 000001111222222222222333333
Q ss_pred HhccCCCcEEEEecChHhHHHHHHHHhhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEE
Q psy1604 513 LREKDEDGVIVFVSTIRNADFIACYLCET--EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHV 590 (693)
Q Consensus 513 l~~~~~~kvLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~V 590 (693)
+ ..+++++|||++++.++.+++.|++. +..+..+||+|++.+|++++++|++|+.+|||||+++++|||+|++++|
T Consensus 809 l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~V 886 (1151)
T 2eyq_A 809 I--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 886 (1151)
T ss_dssp H--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEE
T ss_pred H--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEE
Confidence 3 35688999999999999999999887 7889999999999999999999999999999999999999999999999
Q ss_pred EEcCC-CCChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 591 INYDL-PQEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 591 I~~d~-p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
|+++. ++++.+|.||+||+||.|++|.|++++.++
T Consensus 887 Ii~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 887 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99998 579999999999999999999999998753
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.1e-38 Score=351.59 Aligned_cols=334 Identities=16% Similarity=0.157 Sum_probs=232.7
Q ss_pred CCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 218 YTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 218 ~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
...|+|+|.++++.++++++++++++||+|||++|+++++..+... +.++|||+||++|+.||.+.+.++
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC----------SSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC----------CCeEEEEECcHHHHHHHHHHHHHh
Confidence 3489999999999999999999999999999999999888776532 237999999999999999999998
Q ss_pred hcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCC
Q psy1604 298 AYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHST 377 (693)
Q Consensus 298 ~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~ 377 (693)
.......+..++++.....+ ....++|+|+||+.|.. .....+.++++|||||||++.. ..+..++....
T Consensus 181 ~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~ 250 (510)
T 2oca_A 181 RLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLN 250 (510)
T ss_dssp TSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCT
T ss_pred hcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcc
Confidence 77667788888887665443 45678999999997654 2335578899999999999875 34556655431
Q ss_pred CCCCCCcceEEeeccCchhHHhhhhhhhhhchh----hhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcc
Q psy1604 378 MPDVANRQTLMFSATFPETIQKKGCNILVATMG----RLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHS 453 (693)
Q Consensus 378 ~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 453 (693)
...++++||||++..............+. .....+....+....+......
T Consensus 251 ----~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------------- 305 (510)
T 2oca_A 251 ----NCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLR--------------------- 305 (510)
T ss_dssp ----TCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEE---------------------
T ss_pred ----cCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeec---------------------
Confidence 36789999999976532211111000000 0000000000000000000000
Q ss_pred cCCccccccceeecccCchhhhcceEEEEeecccccccceeEEE-EEccchhHHHHHHHHHhcc---CCCcEEEEecChH
Q psy1604 454 TMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTI-LEVPKQQKKKKLLELLREK---DEDGVIVFVSTIR 529 (693)
Q Consensus 454 ~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~L~~~l~~~---~~~kvLVF~~s~~ 529 (693)
.+..... ......+.+.+ .......+...+.+++... ...++|||++ ..
T Consensus 306 ----------------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~ 358 (510)
T 2oca_A 306 ----------------YPDEFTT----------KLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VS 358 (510)
T ss_dssp ----------------CCHHHHH----------HHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HH
T ss_pred ----------------CChHHhc----------cccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HH
Confidence 0000000 00000000000 0011223444555555442 4455666666 89
Q ss_pred hHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEe-CcccccCCCCCCCEEEEcCCCCChhhhhhhhcc
Q psy1604 530 NADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVAT-AVASRGLDIKGIRHVINYDLPQEIDEYVHRIGR 608 (693)
Q Consensus 530 ~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT-~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GR 608 (693)
+++.+++.|.+.+..+..+||++++.+|+++++.|++|+.+||||| +++++|+|+|++++||++++|+++..|+||+||
T Consensus 359 ~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR 438 (510)
T 2oca_A 359 HGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGR 438 (510)
T ss_dssp HHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhc
Confidence 9999999999988899999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEeC
Q psy1604 609 TGRVGNKGRATSFYD 623 (693)
Q Consensus 609 agR~G~~G~~~~~~~ 623 (693)
+||.|+.+.++++++
T Consensus 439 ~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 439 VLRKHGSKTIATVWD 453 (510)
T ss_dssp HHTTTCCCCCCEEEE
T ss_pred ccccCCCCceEEEEE
Confidence 999998875555555
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.6e-37 Score=379.06 Aligned_cols=341 Identities=17% Similarity=0.196 Sum_probs=244.9
Q ss_pred CCCHHHHHHHHhCCCCCCCHHHHhhhhhhhc-CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcC
Q psy1604 204 GLREILVKNLKKSNYTKPTPIQKYAIPAGLE-GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAP 282 (693)
Q Consensus 204 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~-g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~P 282 (693)
.|.+...+.+...+|..++|+|.++++.++. ++|++++||||||||++|.+|+++.+...+ +.++||++|
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~---------~~kavyi~P 980 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS---------EGRCVYITP 980 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---------TCCEEEECS
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC---------CCEEEEEcC
Confidence 4567778888888999999999999999975 578999999999999999999999998754 237999999
Q ss_pred CHHHHHHHHHHHHH-HhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC--cCCCceeEEEEccchh
Q psy1604 283 TRELVMQIHEVACK-YAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR--ISLASVRFVVLDEADR 359 (693)
Q Consensus 283 tr~La~Q~~~~~~~-~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~--~~l~~~~~lVlDEah~ 359 (693)
+++|+.|+++.+.+ |....++++..++|+...+. .....++|+|+||+++..++++.. ..++++++||+||+|.
T Consensus 981 ~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~---~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~ 1057 (1724)
T 4f92_B 981 MEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHL 1057 (1724)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH---HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGG
T ss_pred hHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcch---hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhh
Confidence 99999999999865 56667888988888765332 233468999999999988776533 3467899999999998
Q ss_pred hhhCCchHHHHHHhccCC---CCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 360 MLDMGFLGDIQHVMQHST---MPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 360 l~~~~~~~~i~~i~~~~~---~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
+.+ ..+..++.++.... .....+.|+++||||+++. .. +..|+....... ....
T Consensus 1058 l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~d------------la~WL~~~~~~~-----~~~~---- 1114 (1724)
T 4f92_B 1058 IGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KD------------VAHWLGCSATST-----FNFH---- 1114 (1724)
T ss_dssp GGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HH------------HHHHHTCCSTTE-----EECC----
T ss_pred cCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HH------------HHHHhCCCCCCe-----EEeC----
Confidence 876 45665555543321 1112478999999998752 22 233332111000 0000
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccch----hHHHHHHHH
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQ----QKKKKLLEL 512 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~k~~~L~~~ 512 (693)
...+...+...+. .+...... .....+...
T Consensus 1115 -----------------------------------~~~RPvpL~~~i~-----------~~~~~~~~~~~~~~~~~~~~~ 1148 (1724)
T 4f92_B 1115 -----------------------------------PNVRPVPLELHIQ-----------GFNISHTQTRLLSMAKPVYHA 1148 (1724)
T ss_dssp -----------------------------------GGGCSSCEEEEEE-----------EECCCSHHHHHHTTHHHHHHH
T ss_pred -----------------------------------CCCCCCCeEEEEE-----------eccCCCchhhhhhhcchHHHH
Confidence 0000000100000 00000001 111223333
Q ss_pred Hh-ccCCCcEEEEecChHhHHHHHHHHhhC----------------------------------CCceEEecCCCCHHHH
Q psy1604 513 LR-EKDEDGVIVFVSTIRNADFIACYLCET----------------------------------EIATTSIHGSRLQSQR 557 (693)
Q Consensus 513 l~-~~~~~kvLVF~~s~~~a~~l~~~L~~~----------------------------------~~~v~~lhg~~~~~~R 557 (693)
+. ....+++||||+++..|+.++..|... ...+..+|++|++.+|
T Consensus 1149 i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R 1228 (1724)
T 4f92_B 1149 ITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMER 1228 (1724)
T ss_dssp HHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHH
T ss_pred HHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHH
Confidence 33 356788999999999999888766321 2348899999999999
Q ss_pred HHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEE----cC------CCCChhhhhhhhcccccCCC--cceEEEEeCCC
Q psy1604 558 EQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVIN----YD------LPQEIDEYVHRIGRTGRVGN--KGRATSFYDPD 625 (693)
Q Consensus 558 ~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~----~d------~p~s~~~y~Qr~GRagR~G~--~G~~~~~~~~~ 625 (693)
..+++.|++|.++|||||+++++|||+|+..+||. || .|.++.+|+||+|||||.|. .|.|++++.+.
T Consensus 1229 ~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1229 RLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp HHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred HHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 99999999999999999999999999999998883 32 36789999999999999997 68999998754
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=8.9e-39 Score=348.86 Aligned_cols=292 Identities=17% Similarity=0.201 Sum_probs=201.6
Q ss_pred hhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeC
Q psy1604 231 AGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYG 310 (693)
Q Consensus 231 ~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~g 310 (693)
.+++++++++++|||||||++|++|+++.+... ++++||++||++|+.|+++.+..+. +....+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----------~~~~lil~Ptr~La~Q~~~~l~~~~------v~~~~~ 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR----------RLRTLVLAPTRVVLSEMKEAFHGLD------VKFHTQ 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTTTSC------EEEESS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----------CCeEEEEcchHHHHHHHHHHHhcCC------eEEecc
Confidence 467899999999999999999999999987654 2479999999999999999887542 221111
Q ss_pred CCChHHHHHHHhcCCcEEEechhhHHHHHhc--------CCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCC
Q psy1604 311 GASSMHFNRQLEKGCNILVATMGRLKDILDR--------GRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVA 382 (693)
Q Consensus 311 g~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~--------~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~ 382 (693)
... .++||+++.+++.. ....+.++++||+||||++ +.++...+..+..... ..
T Consensus 68 ~~~--------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~---~~ 129 (440)
T 1yks_A 68 AFS--------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR---AN 129 (440)
T ss_dssp CCC--------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH---TT
T ss_pred cce--------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc---cC
Confidence 100 26666655433222 1234789999999999998 3333222222221111 13
Q ss_pred CcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCcccccc
Q psy1604 383 NRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQ 462 (693)
Q Consensus 383 ~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (693)
+.|+++||||++..+..+....
T Consensus 130 ~~~~l~~SAT~~~~~~~~~~~~---------------------------------------------------------- 151 (440)
T 1yks_A 130 ESATILMTATPPGTSDEFPHSN---------------------------------------------------------- 151 (440)
T ss_dssp SCEEEEECSSCTTCCCSSCCCS----------------------------------------------------------
T ss_pred CceEEEEeCCCCchhhhhhhcC----------------------------------------------------------
Confidence 6899999999976543221110
Q ss_pred ceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCC
Q psy1604 463 TLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETE 542 (693)
Q Consensus 463 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~ 542 (693)
.....+.. . .+...+ ..++..+.. ..+++||||++++.++.+++.|++.+
T Consensus 152 -------------~~~~~~~~-~--------------~~~~~~-~~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~ 201 (440)
T 1yks_A 152 -------------GEIEDVQT-D--------------IPSEPW-NTGHDWILA-DKRPTAWFLPSIRAANVMAASLRKAG 201 (440)
T ss_dssp -------------SCEEEEEC-C--------------CCSSCC-SSSCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTT
T ss_pred -------------CCeeEeee-c--------------cChHHH-HHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 00000000 0 000000 001122222 25789999999999999999999999
Q ss_pred CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEE-------------------cCCCCChhhhh
Q psy1604 543 IATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVIN-------------------YDLPQEIDEYV 603 (693)
Q Consensus 543 ~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~-------------------~d~p~s~~~y~ 603 (693)
+++..+|| .+|+++++.|++|+.+|||||+++++|||+| +++||+ |+.|.+.++|+
T Consensus 202 ~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~ 276 (440)
T 1yks_A 202 KSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAA 276 (440)
T ss_dssp CCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred CCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHH
Confidence 99999999 3688999999999999999999999999999 999996 88999999999
Q ss_pred hhhcccccC-CCcceEEEEeC--CCCchHHHHHHHHHHHHcCCCchhHH
Q psy1604 604 HRIGRTGRV-GNKGRATSFYD--PDQDGAIAKDLVRILEQAGQPVPEFL 649 (693)
Q Consensus 604 Qr~GRagR~-G~~G~~~~~~~--~~~d~~~~~~l~~~l~~~~~~vp~~l 649 (693)
||+||+||. |++|.|++|+. ..++...++.+.+.+..+..++|..+
T Consensus 277 Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~ 325 (440)
T 1yks_A 277 QRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGM 325 (440)
T ss_dssp HHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGC
T ss_pred HhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccccc
Confidence 999999998 68999999973 34566777888888888888887654
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=6.1e-37 Score=339.40 Aligned_cols=346 Identities=16% Similarity=0.155 Sum_probs=223.9
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.|+|+|.++++.++++++++++++||+|||++|++++... +.++|||+|+++|+.||.+.+.+|
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------------~~~~Lvl~P~~~L~~Q~~~~~~~~-- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF-- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------------CSCEEEEESSHHHHHHHHHHGGGG--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEECCHHHHHHHHHHHHhC--
Confidence 7999999999999999999999999999999999988753 236999999999999999999985
Q ss_pred CCCee-EEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCC
Q psy1604 300 SSVLK-ICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTM 378 (693)
Q Consensus 300 ~~~l~-~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~ 378 (693)
++. +..++|+... ..+|+|+||+.+...+.. ...++++|||||||++.+..+.. ++...
T Consensus 157 --~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-- 216 (472)
T 2fwr_A 157 --GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-- 216 (472)
T ss_dssp --CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC--
T ss_pred --CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc--
Confidence 456 7777666542 479999999999876642 12458999999999998877654 33222
Q ss_pred CCCCCcceEEeeccCchhHHhh--hhhhhhh--chhhhHHHHhhccccccceeEEEec--hhhhhhhcCcccchhHHhhc
Q psy1604 379 PDVANRQTLMFSATFPETIQKK--GCNILVA--TMGRLKDILDRGRISLASVRFVVLD--EADRMLDMGFLGDIQHVMQH 452 (693)
Q Consensus 379 ~~~~~~q~lllSAT~~~~~~~~--~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~ 452 (693)
...+++++|||+...-... ...+.-. ........ ....+....+..+..+ ............. +..
T Consensus 217 ---~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 288 (472)
T 2fwr_A 217 ---IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSL-AGKHLAKYTIKRIFVPLAEDERVEYEKREKV----YKQ 288 (472)
T ss_dssp ---CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHH-TSCCCCSEEECCEEECCCHHHHHHTTTTTHH----HHS
T ss_pred ---CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHH-hcCcCCCeEEEEEEcCCCHHHHHHHHHHHHH----HHH
Confidence 2568999999986321110 0000000 00011111 1111111111111111 1111000000000 000
Q ss_pred ccCCccccccceeecccCchhhhcceEEEEeecccccccce----eEEEEEccchhHHHHHHHHHhccCCCcEEEEecCh
Q psy1604 453 STMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDV----VQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTI 528 (693)
Q Consensus 453 ~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~ 528 (693)
.. . ...+.+ .....+.. ++...... ....... ...........|...|.+++......++||||+++
T Consensus 289 ~l-~----~~~~~~--~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~ 359 (472)
T 2fwr_A 289 FL-R----ARGITL--RRAEDFNK-IVMASGYD-ERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHN 359 (472)
T ss_dssp CS-S----SCCCTT--TCCSSSTT-TTTTTCCS-SSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCH
T ss_pred HH-H----hcCccc--cchhhHHH-HHHHhccC-HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCH
Confidence 00 0 000000 00000000 00000000 0000000 00000122456788888888887889999999999
Q ss_pred HhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcc
Q psy1604 529 RNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGR 608 (693)
Q Consensus 529 ~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GR 608 (693)
+.++.+++.|. +..+||+++..+|++++++|++|+.+|||||+++++|+|+|++++||++|.|+|+..|+||+||
T Consensus 360 ~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR 434 (472)
T 2fwr_A 360 ELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGR 434 (472)
T ss_dssp HHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhh
Confidence 99999999984 5679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCc-ceEEE--EeC
Q psy1604 609 TGRVGNK-GRATS--FYD 623 (693)
Q Consensus 609 agR~G~~-G~~~~--~~~ 623 (693)
+||.|+. +.+++ |++
T Consensus 435 ~~R~g~~k~~~~i~~lv~ 452 (472)
T 2fwr_A 435 ILRPSKGKKEAVLYELIS 452 (472)
T ss_dssp SBCCCTTTCCEEEEEEEE
T ss_pred ccCCCCCCceEEEEEEEe
Confidence 9999964 44444 454
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.7e-38 Score=358.97 Aligned_cols=311 Identities=15% Similarity=0.171 Sum_probs=214.9
Q ss_pred CCCHHHH-----hhhhhhh------cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHH
Q psy1604 220 KPTPIQK-----YAIPAGL------EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVM 288 (693)
Q Consensus 220 ~p~~~Q~-----~ai~~il------~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~ 288 (693)
+|+++|+ ++|+.++ +++++++++|||||||++|++|+++.+... ++++||++||++|+.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~----------~~~~lilaPTr~La~ 284 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK----------RLRTAVLAPTRVVAA 284 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCcEEEEccHHHHHH
Confidence 8999999 9999988 899999999999999999999999887653 247999999999999
Q ss_pred HHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHH
Q psy1604 289 QIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGD 368 (693)
Q Consensus 289 Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~ 368 (693)
|+++.+..+. +. ...+... .....+.-+-+.+.+.+.+.+... ..+.++++|||||||++ +..+...
T Consensus 285 Q~~~~l~~~~----i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~ 351 (673)
T 2wv9_A 285 EMAEALRGLP----VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAA 351 (673)
T ss_dssp HHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHH
T ss_pred HHHHHHhcCC----ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHH
Confidence 9999887542 11 1100000 000111223444555554444433 46889999999999998 2211122
Q ss_pred HHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhH
Q psy1604 369 IQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQH 448 (693)
Q Consensus 369 i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 448 (693)
+..+..... ....|+++||||++..+..+....
T Consensus 352 ~~~l~~~~~---~~~~~vl~~SAT~~~~i~~~~~~~-------------------------------------------- 384 (673)
T 2wv9_A 352 RGYIATRVE---AGEAAAIFMTATPPGTSDPFPDTN-------------------------------------------- 384 (673)
T ss_dssp HHHHHHHHH---TTSCEEEEECSSCTTCCCSSCCCS--------------------------------------------
T ss_pred HHHHHHhcc---ccCCcEEEEcCCCChhhhhhcccC--------------------------------------------
Confidence 222222110 136899999999976543221100
Q ss_pred HhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecCh
Q psy1604 449 VMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTI 528 (693)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~ 528 (693)
.....+.. . .... +...++..+.. ..+++||||+++
T Consensus 385 ---------------------------~~i~~v~~-~--------------~~~~-~~~~~l~~l~~-~~~~~lVF~~s~ 420 (673)
T 2wv9_A 385 ---------------------------SPVHDVSS-E--------------IPDR-AWSSGFEWITD-YAGKTVWFVASV 420 (673)
T ss_dssp ---------------------------SCEEEEEC-C--------------CCSS-CCSSCCHHHHS-CCSCEEEECSSH
T ss_pred ---------------------------CceEEEee-e--------------cCHH-HHHHHHHHHHh-CCCCEEEEECCH
Confidence 00000000 0 0000 00011122222 467899999999
Q ss_pred HhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEE----------------
Q psy1604 529 RNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVIN---------------- 592 (693)
Q Consensus 529 ~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~---------------- 592 (693)
+.++.+++.|++.++.+..+||+ +|+++++.|++|+.+|||||+++++|||+| +++||+
T Consensus 421 ~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r 495 (673)
T 2wv9_A 421 KMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGR 495 (673)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCE
T ss_pred HHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeeccccc
Confidence 99999999999999999999994 788999999999999999999999999999 999998
Q ss_pred ----cCCCCChhhhhhhhcccccC-CCcceEEEEeC--CCCchHHHHHHHHHHHHcCCCchhHH
Q psy1604 593 ----YDLPQEIDEYVHRIGRTGRV-GNKGRATSFYD--PDQDGAIAKDLVRILEQAGQPVPEFL 649 (693)
Q Consensus 593 ----~d~p~s~~~y~Qr~GRagR~-G~~G~~~~~~~--~~~d~~~~~~l~~~l~~~~~~vp~~l 649 (693)
||+|.+.++|+||+||+||. |+.|.|++|+. ...+..+++.+...+.-...++++.+
T Consensus 496 ~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~~g~ 559 (673)
T 2wv9_A 496 VILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLPNGL 559 (673)
T ss_dssp EEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBTTTB
T ss_pred ceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCCchh
Confidence 67899999999999999999 79999999973 34555666667666655555555443
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.4e-37 Score=344.38 Aligned_cols=279 Identities=20% Similarity=0.212 Sum_probs=208.1
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.++++|+++++.+.++++++++||||||||++|++++++. +.++||++|||+|+.|+++.+.+...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------g~~vLVl~PTReLA~Qia~~l~~~~g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------GYKVLVLNPSVAATLGFGAYMSKAHG 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------------TCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------------CCeEEEEcchHHHHHHHHHHHHHHhC
Confidence 5667787778788789999999999999999999988751 23799999999999999998876643
Q ss_pred CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCC
Q psy1604 300 SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMP 379 (693)
Q Consensus 300 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~ 379 (693)
..+...+|+.. ...+++|+|+||++| +.+..+.++++++|||||||. ++.++...+..++....
T Consensus 283 ---~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~-- 346 (666)
T 3o8b_A 283 ---IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAE-- 346 (666)
T ss_dssp ---CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTT--
T ss_pred ---CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhh--
Confidence 34455566543 345789999999998 456667788999999999964 46777777777777643
Q ss_pred CCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccc
Q psy1604 380 DVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVA 459 (693)
Q Consensus 380 ~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (693)
......+++||||++..+... ......+.+.
T Consensus 347 ~~~~~llil~SAT~~~~i~~~----------------------~p~i~~v~~~--------------------------- 377 (666)
T 3o8b_A 347 TAGARLVVLATATPPGSVTVP----------------------HPNIEEVALS--------------------------- 377 (666)
T ss_dssp TTTCSEEEEEESSCTTCCCCC----------------------CTTEEEEECB---------------------------
T ss_pred hcCCceEEEECCCCCcccccC----------------------CcceEEEeec---------------------------
Confidence 212334778899987631100 0000000000
Q ss_pred cccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHh
Q psy1604 460 NRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLC 539 (693)
Q Consensus 460 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~ 539 (693)
. ...+ . ....... +.....+++||||++++.++.+++.|+
T Consensus 378 --------------~-~~~i---------------~---~~~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~ 417 (666)
T 3o8b_A 378 --------------N-TGEI---------------P---FYGKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLS 417 (666)
T ss_dssp --------------S-CSSE---------------E---ETTEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHH
T ss_pred --------------c-cchh---------------H---HHHhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHH
Confidence 0 0000 0 0000000 122357899999999999999999999
Q ss_pred hCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEE----------EcC-----------CCCC
Q psy1604 540 ETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVI----------NYD-----------LPQE 598 (693)
Q Consensus 540 ~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI----------~~d-----------~p~s 598 (693)
+.++.+..+||+|++.+ |+++..+|||||+++++||||+ +++|| ||| +|.+
T Consensus 418 ~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s 489 (666)
T 3o8b_A 418 GLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQD 489 (666)
T ss_dssp TTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECB
T ss_pred hCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCC
Confidence 99999999999999875 4556679999999999999997 99988 677 8999
Q ss_pred hhhhhhhhcccccCCCcceEEEEeCCCCc
Q psy1604 599 IDEYVHRIGRTGRVGNKGRATSFYDPDQD 627 (693)
Q Consensus 599 ~~~y~Qr~GRagR~G~~G~~~~~~~~~~d 627 (693)
.++|+||+||+|| |++|. +.|+++.+.
T Consensus 490 ~~syiQRiGRtGR-g~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 490 AVSRSQRRGRTGR-GRRGI-YRFVTPGER 516 (666)
T ss_dssp HHHHHHHHTTBCS-SSCEE-EEESCCCCB
T ss_pred HHHHHHHhccCCC-CCCCE-EEEEecchh
Confidence 9999999999999 99999 999987654
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=6.6e-37 Score=336.16 Aligned_cols=273 Identities=17% Similarity=0.180 Sum_probs=195.2
Q ss_pred hhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEE
Q psy1604 229 IPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLH 308 (693)
Q Consensus 229 i~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~ 308 (693)
...+.+++++++++|||||||++|++|+++.+... ++++||++|||+|+.|+++.+..+ .+...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~ 78 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----------RLRTAVLAPTRVVAAEMAEALRGL------PVRYQ 78 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEECSHHHHHHHHHHTTTS------CEEEC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----------CCcEEEECchHHHHHHHHHHhcCc------eEeEE
Confidence 45566789999999999999999999999988653 247999999999999999988622 22211
Q ss_pred eCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchh-----hhhCCchHHHHHHhccCCCCCCCC
Q psy1604 309 YGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADR-----MLDMGFLGDIQHVMQHSTMPDVAN 383 (693)
Q Consensus 309 ~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~-----l~~~~~~~~i~~i~~~~~~~~~~~ 383 (693)
.+... .....+..+.++|.+.+...+... ..+.++++|||||||+ ++..++...... ..+
T Consensus 79 ~~~~~-----~~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~---------~~~ 143 (459)
T 2z83_A 79 TSAVQ-----REHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKVE---------LGE 143 (459)
T ss_dssp C-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH---------TTS
T ss_pred ecccc-----cCCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHhc---------cCC
Confidence 11110 011234567788999887766554 4578999999999998 444443322211 137
Q ss_pred cceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccc
Q psy1604 384 RQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQT 463 (693)
Q Consensus 384 ~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (693)
.|+++||||++..+..+....
T Consensus 144 ~~~il~SAT~~~~~~~~~~~~----------------------------------------------------------- 164 (459)
T 2z83_A 144 AAAIFMTATPPGTTDPFPDSN----------------------------------------------------------- 164 (459)
T ss_dssp CEEEEECSSCTTCCCSSCCCS-----------------------------------------------------------
T ss_pred ccEEEEEcCCCcchhhhccCC-----------------------------------------------------------
Confidence 899999999986533221100
Q ss_pred eeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCC
Q psy1604 464 LMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEI 543 (693)
Q Consensus 464 ~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~ 543 (693)
.++........ . .+...+..++.. ..+++||||+++..++.+++.|+..++
T Consensus 165 -------------~pi~~~~~~~~--~-------------~~~~~~~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~ 215 (459)
T 2z83_A 165 -------------APIHDLQDEIP--D-------------RAWSSGYEWITE-YAGKTVWFVASVKMGNEIAMCLQRAGK 215 (459)
T ss_dssp -------------SCEEEEECCCC--S-------------SCCSSCCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred -------------CCeEEecccCC--c-------------chhHHHHHHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCC
Confidence 00000000000 0 000001122222 267899999999999999999999999
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEE--------------------cCCCCChhhhh
Q psy1604 544 ATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVIN--------------------YDLPQEIDEYV 603 (693)
Q Consensus 544 ~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~--------------------~d~p~s~~~y~ 603 (693)
.+..+|++ +|.++++.|++|+.+|||||+++++|||||+ ++||+ |+.|.|.++|+
T Consensus 216 ~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~ 290 (459)
T 2z83_A 216 KVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAA 290 (459)
T ss_dssp CEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHH
T ss_pred cEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHH
Confidence 99999995 6788999999999999999999999999999 99999 77999999999
Q ss_pred hhhcccccCCC-cceEEEEeCCC
Q psy1604 604 HRIGRTGRVGN-KGRATSFYDPD 625 (693)
Q Consensus 604 Qr~GRagR~G~-~G~~~~~~~~~ 625 (693)
||+||+||.|+ +|.|++|+.+.
T Consensus 291 QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 291 QRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHTTSSCCTTCCCEEEEECSCC
T ss_pred HhccccCCCCCCCCeEEEEEccc
Confidence 99999999997 99999999864
No 49
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.9e-36 Score=348.64 Aligned_cols=333 Identities=18% Similarity=0.223 Sum_probs=237.5
Q ss_pred CCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhc-CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCC
Q psy1604 194 PRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLE-GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYC 272 (693)
Q Consensus 194 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~-g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~ 272 (693)
+.++.+|.++++++.+.+.+...+ ..|++.|+++++.++. ++++++++|||||||+ ++|++-....... .
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~------~ 138 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPH------L 138 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGG------G
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcccc------C
Confidence 356778999999999999999888 7899999999988875 5689999999999999 4555522111100 1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhcC-CCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeE
Q psy1604 273 AQPEVIICAPTRELVMQIHEVACKYAYS-SVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRF 351 (693)
Q Consensus 273 ~~~~vLil~Ptr~La~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 351 (693)
.+.+++|++|+++|+.|+.+.+...... .+..+....... .......+|+++||+++.+.+... ..+.++++
T Consensus 139 ~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~------~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~ 211 (773)
T 2xau_A 139 ENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE------NKTSNKTILKYMTDGMLLREAMED-HDLSRYSC 211 (773)
T ss_dssp GTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE------EECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEE
T ss_pred CCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccc------cccCCCCCEEEECHHHHHHHHhhC-ccccCCCE
Confidence 2457999999999999999877655321 111121111100 011246799999999999877654 35889999
Q ss_pred EEEccchh-hhhCCc-hHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEE
Q psy1604 352 VVLDEADR-MLDMGF-LGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFV 429 (693)
Q Consensus 352 lVlDEah~-l~~~~~-~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 429 (693)
|||||+|. +++..+ ...+..+.... ++.++++||||++.+ .+...+ .. ...+
T Consensus 212 lIlDEah~R~ld~d~~~~~l~~l~~~~-----~~~~iIl~SAT~~~~--~l~~~~------------~~-------~~vi 265 (773)
T 2xau_A 212 IILDEAHERTLATDILMGLLKQVVKRR-----PDLKIIIMSATLDAE--KFQRYF------------ND-------APLL 265 (773)
T ss_dssp EEECSGGGCCHHHHHHHHHHHHHHHHC-----TTCEEEEEESCSCCH--HHHHHT------------TS-------CCEE
T ss_pred EEecCccccccchHHHHHHHHHHHHhC-----CCceEEEEeccccHH--HHHHHh------------cC-------CCcc
Confidence 99999995 555332 22333333321 368999999998532 111111 00 0000
Q ss_pred EechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccch----hH
Q psy1604 430 VLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQ----QK 505 (693)
Q Consensus 430 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~k 505 (693)
... .....+.+.+...... ..
T Consensus 266 ~v~-------------------------------------------------------gr~~pv~~~~~~~~~~~~~~~~ 290 (773)
T 2xau_A 266 AVP-------------------------------------------------------GRTYPVELYYTPEFQRDYLDSA 290 (773)
T ss_dssp ECC-------------------------------------------------------CCCCCEEEECCSSCCSCHHHHH
T ss_pred ccc-------------------------------------------------------CcccceEEEEecCCchhHHHHH
Confidence 000 0000011111111111 23
Q ss_pred HHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhh-----------CCCceEEecCCCCHHHHHHHHHHHh-----cCCC
Q psy1604 506 KKKLLELLREKDEDGVIVFVSTIRNADFIACYLCE-----------TEIATTSIHGSRLQSQREQAIHDFK-----TKKM 569 (693)
Q Consensus 506 ~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~-----------~~~~v~~lhg~~~~~~R~~~~~~F~-----~g~~ 569 (693)
+..+.+++.....+++||||+++..++.+++.|.+ .++.+..+||+|++.+|.++++.|+ +|..
T Consensus 291 l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~ 370 (773)
T 2xau_A 291 IRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGR 370 (773)
T ss_dssp HHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCE
T ss_pred HHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCce
Confidence 34455555555788999999999999999999975 5788999999999999999999999 9999
Q ss_pred cEEEEeCcccccCCCCCCCEEEEcCC------------------CCChhhhhhhhcccccCCCcceEEEEeCC
Q psy1604 570 KVLVATAVASRGLDIKGIRHVINYDL------------------PQEIDEYVHRIGRTGRVGNKGRATSFYDP 624 (693)
Q Consensus 570 ~ILVaT~v~~~GiDip~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~G~~G~~~~~~~~ 624 (693)
+|||||+++++|||||++++||++++ |.|.++|+||+|||||. ++|.|+.|+++
T Consensus 371 kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~ 442 (773)
T 2xau_A 371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 442 (773)
T ss_dssp EEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCH
T ss_pred EEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecH
Confidence 99999999999999999999999888 88999999999999999 89999999974
No 50
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.5e-35 Score=297.47 Aligned_cols=227 Identities=47% Similarity=0.762 Sum_probs=197.5
Q ss_pred cCCCccceeeecCCCCCC--CCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHH
Q psy1604 178 FSGWENVEVKVSGDNPPR--PIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIP 255 (693)
Q Consensus 178 f~~~~~~~v~~~~~~~~~--~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~ 255 (693)
|+.++++.+.+.+...|. ++.+|++++|++.++++|...||..|+|+|.++++.+++++++++++|||||||++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~ 80 (253)
T 1wrb_A 1 FDKYDSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIP 80 (253)
T ss_dssp --CCCCCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CcchhhCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHH
Confidence 567788888888888877 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcc-cCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhh
Q psy1604 256 IMHHLLESPGELV-TGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGR 334 (693)
Q Consensus 256 il~~l~~~~~~~~-~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~ 334 (693)
+++.+........ .....++++||++||++|+.|+++.+.++....++.+..++|+.....+...+..+++|+|+||++
T Consensus 81 ~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~ 160 (253)
T 1wrb_A 81 IINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGR 160 (253)
T ss_dssp HHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHH
T ss_pred HHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHH
Confidence 9999876542110 001335689999999999999999999998888889999999988887777788889999999999
Q ss_pred HHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 335 LKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 335 L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
|.+++.+..+.+.++++||+||||++.+++|...+..++.....+...+.|+++||||+++.+..++..+
T Consensus 161 l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~ 230 (253)
T 1wrb_A 161 LVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADF 230 (253)
T ss_dssp HHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHH
T ss_pred HHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHH
Confidence 9999998888899999999999999999999999999998655554457899999999999888776665
No 51
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.4e-34 Score=288.10 Aligned_cols=214 Identities=40% Similarity=0.641 Sum_probs=193.7
Q ss_pred ceeeecCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcC
Q psy1604 184 VEVKVSGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLES 263 (693)
Q Consensus 184 ~~v~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~ 263 (693)
..+.+.+.+.|.++.+|.+++|++.+++.+.+.||.+|+|+|.++++.+++++++++++|||||||++|++|++..+...
T Consensus 15 ~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~ 94 (242)
T 3fe2_A 15 KEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 94 (242)
T ss_dssp HTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTS
T ss_pred CceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC
Q psy1604 264 PGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR 343 (693)
Q Consensus 264 ~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~ 343 (693)
+... ...++++||++||++|+.|+++.++++....++++..++|+.....+...+..+++|+|+||++|.+++.+..
T Consensus 95 ~~~~---~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 171 (242)
T 3fe2_A 95 PFLE---RGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK 171 (242)
T ss_dssp CCCC---TTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTS
T ss_pred cccc---cCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC
Confidence 4211 1346789999999999999999999998888899999999999888888888899999999999999999888
Q ss_pred cCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 344 ISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 344 ~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
..+.++++||+||||++.+++|...+..++.... ++.|+++||||+|+.+..++..+
T Consensus 172 ~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~----~~~q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 172 TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR----PDRQTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC----SSCEEEEEESCCCHHHHHHHHHH
T ss_pred CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC----ccceEEEEEeecCHHHHHHHHHH
Confidence 8899999999999999999999999999987643 47899999999999988877666
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.2e-35 Score=320.17 Aligned_cols=271 Identities=16% Similarity=0.160 Sum_probs=190.3
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGAS 313 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~ 313 (693)
+++++++++|||||||++|++|+++.+... ++++||++||++|+.|+++.+. ++.+....+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~----------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~ 64 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK----------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQ 64 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcc
Confidence 368999999999999999999999777643 2479999999999999988775 234443333211
Q ss_pred hHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccC
Q psy1604 314 SMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATF 393 (693)
Q Consensus 314 ~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~ 393 (693)
.....+..+.+.|.+.+.+.+.. ...+.++++|||||+|++ +..+......+.... .....|+++||||+
T Consensus 65 -----~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~---~~~~~~~l~~SAT~ 134 (431)
T 2v6i_A 65 -----SERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRV---SMGDAGAIFMTATP 134 (431)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHH---HTTSCEEEEEESSC
T ss_pred -----ccCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHh---hCCCCcEEEEeCCC
Confidence 11123456778899988776665 456889999999999997 333333333333221 11378999999999
Q ss_pred chhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchh
Q psy1604 394 PETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPET 473 (693)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 473 (693)
+..+..+....
T Consensus 135 ~~~~~~~~~~~--------------------------------------------------------------------- 145 (431)
T 2v6i_A 135 PGTTEAFPPSN--------------------------------------------------------------------- 145 (431)
T ss_dssp TTCCCSSCCCS---------------------------------------------------------------------
T ss_pred CcchhhhcCCC---------------------------------------------------------------------
Confidence 86432211000
Q ss_pred hhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCC
Q psy1604 474 IQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRL 553 (693)
Q Consensus 474 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~ 553 (693)
.....+.. .. + ..+...+++.+... .+++||||++++.++.+++.|++.++.+..+||+
T Consensus 146 --~~i~~~~~-~~--------------~-~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~-- 204 (431)
T 2v6i_A 146 --SPIIDEET-RI--------------P-DKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK-- 204 (431)
T ss_dssp --SCCEEEEC-CC--------------C-SSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT--
T ss_pred --Cceeeccc-cC--------------C-HHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc--
Confidence 00000000 00 0 00011122333333 5689999999999999999999999999999997
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCE-----------------EEEcCCCCChhhhhhhhcccccCCC-c
Q psy1604 554 QSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRH-----------------VINYDLPQEIDEYVHRIGRTGRVGN-K 615 (693)
Q Consensus 554 ~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~-----------------VI~~d~p~s~~~y~Qr~GRagR~G~-~ 615 (693)
+|++++++|++|+.+|||||+++++|||+| +.+ ||+++.|.+.++|+||+||+||.|. .
T Consensus 205 --~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 281 (431)
T 2v6i_A 205 --TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKL 281 (431)
T ss_dssp --THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred --cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCC
Confidence 578899999999999999999999999999 655 6788999999999999999999985 4
Q ss_pred ceEEEEeC
Q psy1604 616 GRATSFYD 623 (693)
Q Consensus 616 G~~~~~~~ 623 (693)
|.+++|..
T Consensus 282 ~~~~~~~~ 289 (431)
T 2v6i_A 282 GDIYAYSG 289 (431)
T ss_dssp CCEEEECS
T ss_pred CeEEEEcC
Confidence 55555553
No 53
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.7e-34 Score=328.39 Aligned_cols=343 Identities=15% Similarity=0.180 Sum_probs=190.9
Q ss_pred CCCCHHHHhhhhhhhc----C-CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHH-H
Q psy1604 219 TKPTPIQKYAIPAGLE----G-RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIH-E 292 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~----g-~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~-~ 292 (693)
..|+|+|.++++.+++ + ++++++++||||||++++ +++..++....... .....+++|||+||++|+.|+. +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~~~~-~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARWNRT-GDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTCCSS-CSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhcccccc-cccCCCeEEEEeCCHHHHHHHHHH
Confidence 3799999999999875 4 679999999999999954 45555554431100 0024568999999999999999 7
Q ss_pred HHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhc----CCcCCCceeEEEEccchhhhhCCchHH
Q psy1604 293 VACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDR----GRISLASVRFVVLDEADRMLDMGFLGD 368 (693)
Q Consensus 293 ~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~----~~~~l~~~~~lVlDEah~l~~~~~~~~ 368 (693)
.+..+.. .+..+.++ ......+|+|+||++|...+.. ..+....+++||+||||++.... ...
T Consensus 255 ~~~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~ 321 (590)
T 3h1t_A 255 TFTPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSN 321 (590)
T ss_dssp CCTTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------
T ss_pred HHHhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHH
Confidence 7776642 22222222 2345689999999999887642 23456779999999999997642 123
Q ss_pred HHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhhh--hhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccch
Q psy1604 369 IQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNIL--VATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDI 446 (693)
Q Consensus 369 i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 446 (693)
+..++.... ..++++||||+..........++ ......+...+....+....+.....+.... +
T Consensus 322 ~~~il~~~~-----~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~----~----- 387 (590)
T 3h1t_A 322 WREILEYFE-----PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAA----G----- 387 (590)
T ss_dssp CHHHHHHST-----TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------
T ss_pred HHHHHHhCC-----cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecc----c-----
Confidence 344444322 46899999998643221111110 0000011111111111100000000000000 0
Q ss_pred hHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccc-------hhHHH----HHHHHHhc
Q psy1604 447 QHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPK-------QQKKK----KLLELLRE 515 (693)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~k~~----~L~~~l~~ 515 (693)
. .............+......... ..+.. .+.+.+..
T Consensus 388 ---------------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~ 435 (590)
T 3h1t_A 388 ---------------------------W-----RPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKR 435 (590)
T ss_dssp -----------------------------------------------------CCSHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ---------------------------c-----ccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHh
Confidence 0 00000000000000000000000 11222 23334443
Q ss_pred -cCCCcEEEEecChHhHHHHHHHHhhCCCc--------eEEecCCCCHHHHHHHHHHHhcCCCc---EEEEeCcccccCC
Q psy1604 516 -KDEDGVIVFVSTIRNADFIACYLCETEIA--------TTSIHGSRLQSQREQAIHDFKTKKMK---VLVATAVASRGLD 583 (693)
Q Consensus 516 -~~~~kvLVF~~s~~~a~~l~~~L~~~~~~--------v~~lhg~~~~~~R~~~~~~F~~g~~~---ILVaT~v~~~GiD 583 (693)
...+++||||+++.+|+.+++.|.+.+.. +..+||+++. +|++++++|++|+.+ |||||+++++|+|
T Consensus 436 ~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiD 514 (590)
T 3h1t_A 436 TDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVD 514 (590)
T ss_dssp HCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCC
T ss_pred cCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCcc
Confidence 34579999999999999999999775432 6788998753 799999999998766 8899999999999
Q ss_pred CCCCCEEEEcCCCCChhhhhhhhcccccCCC--cceEEEEeC
Q psy1604 584 IKGIRHVINYDLPQEIDEYVHRIGRTGRVGN--KGRATSFYD 623 (693)
Q Consensus 584 ip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~--~G~~~~~~~ 623 (693)
+|++++||++++|+|+..|+||+||++|.+. ....+++++
T Consensus 515 ip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 515 APTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp CTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred chheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 9999999999999999999999999999875 334444444
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.1e-34 Score=344.21 Aligned_cols=400 Identities=17% Similarity=0.164 Sum_probs=235.1
Q ss_pred CCCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
..|+|||.+++..++.. .++|++++||+|||++++..+...+.... ..++|||||+ .|+.||.+++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~---------~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA---------AERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS---------CCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC---------CCeEEEEeCH-HHHHHHHHHHHH
Confidence 37999999999988864 58999999999999998776665554322 2369999999 999999999977
Q ss_pred HhcCCCeeEEEEeCCCChHHHHH---HHhcCCcEEEechhhHHHHHhc-CCcCCCceeEEEEccchhhhhCCch-----H
Q psy1604 297 YAYSSVLKICLHYGGASSMHFNR---QLEKGCNILVATMGRLKDILDR-GRISLASVRFVVLDEADRMLDMGFL-----G 367 (693)
Q Consensus 297 ~~~~~~l~~~~~~gg~~~~~~~~---~~~~~~~IlV~Tp~~L~~~l~~-~~~~l~~~~~lVlDEah~l~~~~~~-----~ 367 (693)
+. ++.+..+.++.. ..... ......+|+|+|++.+...... ..+...++++|||||||++.+.+.. .
T Consensus 222 ~f---~l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~ 297 (968)
T 3dmq_A 222 RF---NLRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQ 297 (968)
T ss_dssp HS---CCCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHH
T ss_pred Hh---CCCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHH
Confidence 64 344444333211 11111 1123579999999988642211 1133457899999999999765432 2
Q ss_pred HHHHHhccCCCCCCCCcceEEeeccCch-hHHhhhhhhhhhchhh------h----------HHHHhhccccccceeEEE
Q psy1604 368 DIQHVMQHSTMPDVANRQTLMFSATFPE-TIQKKGCNILVATMGR------L----------KDILDRGRISLASVRFVV 430 (693)
Q Consensus 368 ~i~~i~~~~~~~~~~~~q~lllSAT~~~-~~~~~~~~~~~~~~~~------l----------~~~l~~~~~~~~~~~~~~ 430 (693)
.+..+.. ...++++||||+-. ....+...+-...+.. + ...+... ..........
T Consensus 298 ~l~~L~~-------~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l-~~~~~~~~~~ 369 (968)
T 3dmq_A 298 AIEQLAE-------HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAML-LAGNKLSNDE 369 (968)
T ss_dssp HHHHHHT-------TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTT-TTSCCCCGGG
T ss_pred HHHHHhh-------cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHH-hccCCCCHHH
Confidence 2333322 24579999999832 2222111111001110 0 0000000 0000000000
Q ss_pred echhhhhhhcC----cc---------------cchhHHhhc------------ccCCccccccceeecccCchhhhcceE
Q psy1604 431 LDEADRMLDMG----FL---------------GDIQHVMQH------------STMPDVANRQTLMFSATFPETIQKNYI 479 (693)
Q Consensus 431 ~d~~~~~~~~~----~~---------------~~~~~~~~~------------~~~~~~~~~~~~~~~~t~~~~l~~~~~ 479 (693)
.......+... +. ..+...... ......+.+........++......|.
T Consensus 370 ~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~ 449 (968)
T 3dmq_A 370 LNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIK 449 (968)
T ss_dssp TTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHH
Confidence 00000000000 00 000000000 000000000000000000000000000
Q ss_pred EEEe-ec-------------cccccccee-EEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhh-CCC
Q psy1604 480 FIAV-GI-------------IGGASTDVV-QTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCE-TEI 543 (693)
Q Consensus 480 ~~~~-~~-------------~~~~~~~~~-~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~-~~~ 543 (693)
.... .. .......+. ..........|...|.+++......++||||+++..++.++..|.. .++
T Consensus 450 ~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~ 529 (968)
T 3dmq_A 450 VSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGI 529 (968)
T ss_dssp HHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCC
T ss_pred HHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCC
Confidence 0000 00 000000000 0001123457889999999888889999999999999999999985 599
Q ss_pred ceEEecCCCCHHHHHHHHHHHhcCC--CcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEE
Q psy1604 544 ATTSIHGSRLQSQREQAIHDFKTKK--MKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSF 621 (693)
Q Consensus 544 ~v~~lhg~~~~~~R~~~~~~F~~g~--~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~ 621 (693)
++..+||+|++.+|++++++|++|+ ++|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.+.++++
T Consensus 530 ~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~ 609 (968)
T 3dmq_A 530 RAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIH 609 (968)
T ss_dssp CEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEE
T ss_pred cEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEE
Confidence 9999999999999999999999998 99999999999999999999999999999999999999999999999977776
Q ss_pred eCCCCchHHHHHHHHHHHHc
Q psy1604 622 YDPDQDGAIAKDLVRILEQA 641 (693)
Q Consensus 622 ~~~~~d~~~~~~l~~~l~~~ 641 (693)
+... .......+.+.+.++
T Consensus 610 ~~~~-~~t~ee~i~~~~~~k 628 (968)
T 3dmq_A 610 VPYL-EKTAQSVLVRWYHEG 628 (968)
T ss_dssp EEEE-TTSHHHHHHHHHHHT
T ss_pred EecC-CChHHHHHHHHHHhC
Confidence 5432 233444455555433
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.1e-33 Score=313.28 Aligned_cols=388 Identities=13% Similarity=0.174 Sum_probs=234.3
Q ss_pred CCCCHHHHhhhhhhh----cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGL----EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il----~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
..|+|||.+++..+. .+++++++++||+|||++++. ++..+.... ...++|||||+ +|+.||.+++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~~--------~~~~~LIv~P~-~l~~qw~~e~ 105 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKEN--------ELTPSLVICPL-SVLKNWEEEL 105 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHTT--------CCSSEEEEECS-TTHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhcC--------CCCCEEEEccH-HHHHHHHHHH
Confidence 379999999998774 578999999999999999654 444444332 23479999995 6999999999
Q ss_pred HHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 295 CKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 295 ~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
.+|.. .+++..+.|+... ......+|+|+||+++.+... +....+++||+||||++.+.. ......+.
T Consensus 106 ~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~ 173 (500)
T 1z63_A 106 SKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVK 173 (500)
T ss_dssp HHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHH
T ss_pred HHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHH
Confidence 99974 3566665555422 123457999999999976433 334578999999999997554 22333333
Q ss_pred cCCCCCCCCcceEEeeccCch-hHHhhhhhhhhhch-------------------------hhhHHHHhhccc-------
Q psy1604 375 HSTMPDVANRQTLMFSATFPE-TIQKKGCNILVATM-------------------------GRLKDILDRGRI------- 421 (693)
Q Consensus 375 ~~~~~~~~~~q~lllSAT~~~-~~~~~~~~~~~~~~-------------------------~~l~~~l~~~~~------- 421 (693)
.. ...+++++|||+.. ....+...+-...+ ..+...+....+
T Consensus 174 ~l-----~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~ 248 (500)
T 1z63_A 174 EL-----KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDK 248 (500)
T ss_dssp TS-----CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCH
T ss_pred hh-----ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeeccccc
Confidence 32 24678999999832 22222111100000 111111111000
Q ss_pred ----cccce--eEEEe--chhhhhhhcCcccchhHHhhccc-CCccccccceeecccCchhhhcceEEEEeecccccccc
Q psy1604 422 ----SLASV--RFVVL--DEADRMLDMGFLGDIQHVMQHST-MPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTD 492 (693)
Q Consensus 422 ----~~~~~--~~~~~--d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~ 492 (693)
.+... ..+.. ............ ........ ......... .+.. ...+++.. ..+.
T Consensus 249 ~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~---~~~~~~~~~~~~~~~~~~-~~~~--l~~lr~~~----------~~p~ 312 (500)
T 1z63_A 249 AIINDLPDKIETNVYCNLTPEQAAMYKAEV---ENLFNNIDSVTGIKRKGM-ILST--LLKLKQIV----------DHPA 312 (500)
T ss_dssp HHHTTSCSEEEEEEEECCCHHHHHHHHHHH---HHHTTTTTTCCTHHHHHH-HHHH--HHHHHHHT----------TCTH
T ss_pred chhhcCCCCeEEEEEcCCCHHHHHHHHHHH---HHHHHHHHhhhcccchHH-HHHH--HHHHHHHh----------CCHH
Confidence 00010 01111 111100000000 00000000 000000000 0000 00000000 0000
Q ss_pred e-eEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhC-CCceEEecCCCCHHHHHHHHHHHhcC-
Q psy1604 493 V-VQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCET-EIATTSIHGSRLQSQREQAIHDFKTK- 567 (693)
Q Consensus 493 ~-~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~-~~~v~~lhg~~~~~~R~~~~~~F~~g- 567 (693)
+ ...........|...+.+++.. ..+.++||||+++..++.+...|... ++.+..+||++++.+|++++++|+++
T Consensus 313 l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~ 392 (500)
T 1z63_A 313 LLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNP 392 (500)
T ss_dssp HHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCT
T ss_pred HhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCC
Confidence 0 0000012345788888888876 36789999999999999999999875 89999999999999999999999998
Q ss_pred CCc-EEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCch
Q psy1604 568 KMK-VLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVP 646 (693)
Q Consensus 568 ~~~-ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp 646 (693)
..+ +|++|+++++|+|++.+++||+||+|||+..|.||+||++|.|+...+.++..-. ...+...+.+.+..+..-..
T Consensus 393 ~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~-~~tiee~i~~~~~~K~~l~~ 471 (500)
T 1z63_A 393 SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS-VGTLEEKIDQLLAFKRSLFK 471 (500)
T ss_dssp TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEE-TTSHHHHTHHHHTTCSSSSS
T ss_pred CCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEe-CCCHHHHHHHHHHHHHHHHH
Confidence 455 7999999999999999999999999999999999999999999988775443211 23455666677666555544
Q ss_pred hHHh
Q psy1604 647 EFLK 650 (693)
Q Consensus 647 ~~l~ 650 (693)
..+.
T Consensus 472 ~~~~ 475 (500)
T 1z63_A 472 DIIS 475 (500)
T ss_dssp SGGG
T ss_pred HHhh
Confidence 4443
No 56
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=273.93 Aligned_cols=208 Identities=35% Similarity=0.533 Sum_probs=175.6
Q ss_pred CCCCCCCCCcccc-CCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcc
Q psy1604 190 GDNPPRPIESFES-AGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELV 268 (693)
Q Consensus 190 ~~~~~~~~~~f~~-~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~ 268 (693)
+...|.|..+|++ +++++.++++|.+.||.+|+|+|.++++.+++++++++++|||||||++|++|++..+.......
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~- 89 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR- 89 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh-
Confidence 3456888999999 79999999999999999999999999999999999999999999999999999999886542111
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCc
Q psy1604 269 TGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLAS 348 (693)
Q Consensus 269 ~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~ 348 (693)
....++++||++||++|+.|+++.+.++. ..++++..++|+.....+...+..+++|+|+||++|.+++......+.+
T Consensus 90 -~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~ 167 (228)
T 3iuy_A 90 -EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRS 167 (228)
T ss_dssp ----CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTT
T ss_pred -hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCccc
Confidence 11356789999999999999999999986 4567888899998888777788889999999999999999888888999
Q ss_pred eeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 349 VRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 349 ~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
+++||+||||++.+.+|...+..++.... ++.|+++||||+|+.+..+...+
T Consensus 168 ~~~lViDEah~~~~~~~~~~~~~i~~~~~----~~~~~l~~SAT~~~~~~~~~~~~ 219 (228)
T 3iuy_A 168 ITYLVIDEADKMLDMEFEPQIRKILLDVR----PDRQTVMTSATWPDTVRQLALSY 219 (228)
T ss_dssp CCEEEECCHHHHHHTTCHHHHHHHHHHSC----SSCEEEEEESCCCHHHHHHHHTT
T ss_pred ceEEEEECHHHHhccchHHHHHHHHHhCC----cCCeEEEEEeeCCHHHHHHHHHH
Confidence 99999999999999999999999987643 47899999999999988877665
No 57
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2e-32 Score=309.73 Aligned_cols=280 Identities=18% Similarity=0.187 Sum_probs=200.0
Q ss_pred HHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCee
Q psy1604 225 QKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLK 304 (693)
Q Consensus 225 Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~ 304 (693)
|.......+++++++++||||||||+. ++..+...+ +.+|++|||+||.|+++.+.+. ++.
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~~----al~~l~~~~-----------~gl~l~PtR~LA~Qi~~~l~~~----g~~ 205 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTYH----AIQKYFSAK-----------SGVYCGPLKLLAHEIFEKSNAA----GVP 205 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHHH----HHHHHHHSS-----------SEEEEESSHHHHHHHHHHHHHT----TCC
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHHH----HHHHHHhcC-----------CeEEEeCHHHHHHHHHHHHHhc----CCc
Confidence 333344556889999999999999994 334443332 3599999999999999999885 467
Q ss_pred EEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCc
Q psy1604 305 ICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANR 384 (693)
Q Consensus 305 ~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~ 384 (693)
+..++|+..... .......+++++|++.+. ....+++|||||||++.+.++...+..++.... ....
T Consensus 206 v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~---~~~i 272 (677)
T 3rc3_A 206 CDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC---AEEV 272 (677)
T ss_dssp EEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC---EEEE
T ss_pred EEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccC---ccce
Confidence 778888754310 000123678888886552 246789999999999999999988888876643 1477
Q ss_pred ceEEeeccCchhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccce
Q psy1604 385 QTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTL 464 (693)
Q Consensus 385 q~lllSAT~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (693)
+++++|||.+. +..+.... . ........
T Consensus 273 ~il~~SAT~~~-i~~l~~~~------------~------~~~~v~~~--------------------------------- 300 (677)
T 3rc3_A 273 HLCGEPAAIDL-VMELMYTT------------G------EEVEVRDY--------------------------------- 300 (677)
T ss_dssp EEEECGGGHHH-HHHHHHHH------------T------CCEEEEEC---------------------------------
T ss_pred EEEeccchHHH-HHHHHHhc------------C------CceEEEEe---------------------------------
Confidence 99999999432 22211110 0 00000000
Q ss_pred eecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCc
Q psy1604 465 MFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIA 544 (693)
Q Consensus 465 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~ 544 (693)
.+...... ... . +..+... ..+.+|||++++.++.+++.|.+.++.
T Consensus 301 ---------~r~~~l~~------------------~~~--~----l~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~ 346 (677)
T 3rc3_A 301 ---------KRLTPISV------------------LDH--A----LESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLE 346 (677)
T ss_dssp ---------CCSSCEEE------------------CSS--C----CCSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred ---------eecchHHH------------------HHH--H----HHHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCC
Confidence 00000000 000 0 0001111 344589999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHhc--CCCcEEEEeCcccccCCCCCCCEEEEcCC--------------CCChhhhhhhhcc
Q psy1604 545 TTSIHGSRLQSQREQAIHDFKT--KKMKVLVATAVASRGLDIKGIRHVINYDL--------------PQEIDEYVHRIGR 608 (693)
Q Consensus 545 v~~lhg~~~~~~R~~~~~~F~~--g~~~ILVaT~v~~~GiDip~v~~VI~~d~--------------p~s~~~y~Qr~GR 608 (693)
+..+||+|++.+|.++++.|++ |+++|||||+++++|||+ ++++||++++ |.+.++|+||+||
T Consensus 347 v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GR 425 (677)
T 3rc3_A 347 SAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGR 425 (677)
T ss_dssp CEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTT
T ss_pred eeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcC
Confidence 9999999999999999999999 889999999999999999 8999999999 7799999999999
Q ss_pred cccCCCc---ceEEEEeC
Q psy1604 609 TGRVGNK---GRATSFYD 623 (693)
Q Consensus 609 agR~G~~---G~~~~~~~ 623 (693)
|||.|+. |.|+.++.
T Consensus 426 AGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 426 AGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp BTCTTSSCSSEEEEESST
T ss_pred CCCCCCCCCCEEEEEEec
Confidence 9999965 55555543
No 58
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.6e-31 Score=302.26 Aligned_cols=383 Identities=14% Similarity=0.155 Sum_probs=224.7
Q ss_pred CCCHHHHhhhhhhh---------cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGL---------EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQI 290 (693)
Q Consensus 220 ~p~~~Q~~ai~~il---------~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 290 (693)
.|+|||.+++..+. .+.+.|++++||+|||++++..+...+...+... ....++|||+|+ +|+.||
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~----p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCK----PEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSS----CSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcccc----CCCCcEEEEecH-HHHHHH
Confidence 79999999999874 4567999999999999997666655444332210 123469999996 899999
Q ss_pred HHHHHHHhcCCCeeEEEEeCCCChHHHHH--HH-h-----cCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhh
Q psy1604 291 HEVACKYAYSSVLKICLHYGGASSMHFNR--QL-E-----KGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~gg~~~~~~~~--~~-~-----~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~ 362 (693)
.+++.+|... .+.+..++++........ .. . ...+|+|+|++.+..... .+....+++||+||||++.+
T Consensus 130 ~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 130 YNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCC
Confidence 9999999754 455666666543321111 11 1 147899999999976432 33445789999999999965
Q ss_pred CCchHHHHHHhccCCCCCCCCcceEEeeccCc-hhHHhhhhhhhhhchhhh------HHHHhhc----ccc-ccceeE--
Q psy1604 363 MGFLGDIQHVMQHSTMPDVANRQTLMFSATFP-ETIQKKGCNILVATMGRL------KDILDRG----RIS-LASVRF-- 428 (693)
Q Consensus 363 ~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~-~~~~~~~~~~~~~~~~~l------~~~l~~~----~~~-~~~~~~-- 428 (693)
.. ......+... ...+++++|||+- +.+..+...+-...|..+ ...+... ... ......
T Consensus 207 ~~--~~~~~al~~l-----~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 279 (644)
T 1z3i_X 207 SD--NQTYLALNSM-----NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAA 279 (644)
T ss_dssp TC--HHHHHHHHHH-----CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHH
T ss_pred hh--hHHHHHHHhc-----ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHH
Confidence 43 2222222222 1457899999973 333333222211111111 1100000 000 000000
Q ss_pred --EEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEE----------Eeec-----------
Q psy1604 429 --VVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFI----------AVGI----------- 485 (693)
Q Consensus 429 --~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~----------~~~~----------- 485 (693)
..+.+....+..-........ ....++..........+.+.....|-.+ ..+.
T Consensus 280 ~~~~~~~L~~~l~~~~lRR~k~~----v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~ 355 (644)
T 1z3i_X 280 GEQKLQELISIVNRCLIRRTSDI----LSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITS 355 (644)
T ss_dssp HHHHHHHHHHHHHHHEECCCGGG----GGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHh----HhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHH
Confidence 000000000000000000000 0001111111111000100000000000 0000
Q ss_pred -------------------c--cc----cccceeEEEEEccchhHHHHHHHHHh---ccCCCcEEEEecChHhHHHHHHH
Q psy1604 486 -------------------I--GG----ASTDVVQTILEVPKQQKKKKLLELLR---EKDEDGVIVFVSTIRNADFIACY 537 (693)
Q Consensus 486 -------------------~--~~----~~~~~~~~~~~~~~~~k~~~L~~~l~---~~~~~kvLVF~~s~~~a~~l~~~ 537 (693)
. .. ................|...+..++. .....++|||++++..++.+...
T Consensus 356 Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~ 435 (644)
T 1z3i_X 356 LKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKL 435 (644)
T ss_dssp HHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHH
Confidence 0 00 00000000000112345555544444 34678999999999999999999
Q ss_pred HhhCCCceEEecCCCCHHHHHHHHHHHhcCCCc---EEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCC
Q psy1604 538 LCETEIATTSIHGSRLQSQREQAIHDFKTKKMK---VLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGN 614 (693)
Q Consensus 538 L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~---ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~ 614 (693)
|...++.+..+||+++..+|++++++|+++... +|++|+++++|||++++++||+||+|||+..|.|++||++|.|+
T Consensus 436 l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq 515 (644)
T 1z3i_X 436 CRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQ 515 (644)
T ss_dssp HHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTC
T ss_pred HHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCC
Confidence 999999999999999999999999999998754 89999999999999999999999999999999999999999999
Q ss_pred cceEEEE
Q psy1604 615 KGRATSF 621 (693)
Q Consensus 615 ~G~~~~~ 621 (693)
...++++
T Consensus 516 ~~~v~v~ 522 (644)
T 1z3i_X 516 KKTCYIY 522 (644)
T ss_dssp CSCEEEE
T ss_pred CCceEEE
Confidence 8765543
No 59
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-32 Score=315.79 Aligned_cols=403 Identities=17% Similarity=0.209 Sum_probs=241.4
Q ss_pred CCCCHHHHhhhhhhh----cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGL----EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il----~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
..|+|||.+++..++ .+++.|++++||+|||++++..+...+.... ....+||||| .+|+.||.+++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~--------~~~~~LIV~P-~sll~qW~~E~ 305 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR--------QNGPHIIVVP-LSTMPAWLDTF 305 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS--------CCSCEEEECC-TTTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC--------CCCCEEEEEC-chHHHHHHHHH
Confidence 379999999998776 7889999999999999996665554433322 2235899999 68899999999
Q ss_pred HHHhcCCCeeEEEEeCCCChHHHHHHH------------hcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhh
Q psy1604 295 CKYAYSSVLKICLHYGGASSMHFNRQL------------EKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 295 ~~~~~~~~l~~~~~~gg~~~~~~~~~~------------~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~ 362 (693)
.+|. ..+++..++|+.......... ....+|+|+|++.+...... +....+++|||||||++.+
T Consensus 306 ~~~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 306 EKWA--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKN 381 (800)
T ss_dssp HHHS--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCC
T ss_pred HHHC--CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcC
Confidence 9997 346777777665544333222 23578999999999764332 2234789999999999964
Q ss_pred CCchHHHHHHhccCCCCCCCCcceEEeeccC-chhHHhhhhhhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcC
Q psy1604 363 MGFLGDIQHVMQHSTMPDVANRQTLMFSATF-PETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMG 441 (693)
Q Consensus 363 ~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~ 441 (693)
.. ......+... ...+++++|||+ .+.+..+...+-...|..+...- ...+.............
T Consensus 382 ~~--s~~~~~l~~l-----~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~--------~~~~~~~~~~~~~~~~~ 446 (800)
T 3mwy_W 382 AE--SSLYESLNSF-----KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQ--------EIDFENQDEEQEEYIHD 446 (800)
T ss_dssp SS--SHHHHHHTTS-----EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC-----------------CCTTHHHHHHHH
T ss_pred ch--hHHHHHHHHh-----hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchh--------hhcccccchhHHHHHHH
Confidence 33 3334444332 256789999997 23333332222111221111000 00000000000000000
Q ss_pred cccchhHHh----hcccCCccccccceeecccCchhhhc--------ceEEEEeeccccc---------------cc---
Q psy1604 442 FLGDIQHVM----QHSTMPDVANRQTLMFSATFPETIQK--------NYIFIAVGIIGGA---------------ST--- 491 (693)
Q Consensus 442 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~t~~~~l~~--------~~~~~~~~~~~~~---------------~~--- 491 (693)
+...+..++ +......++..........+...... .+.....+..... .+
T Consensus 447 L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~ 526 (800)
T 3mwy_W 447 LHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLF 526 (800)
T ss_dssp HHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGS
T ss_pred HHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhh
Confidence 000000000 00111111221111111111111100 0000000000000 00
Q ss_pred -----ceeEEE--E----------EccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCC
Q psy1604 492 -----DVVQTI--L----------EVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSR 552 (693)
Q Consensus 492 -----~~~~~~--~----------~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~ 552 (693)
.....+ . ......|...|.+++.. ..+.++|||++....++.|..+|...++.+..+||++
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~ 606 (800)
T 3mwy_W 527 DNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTV 606 (800)
T ss_dssp SSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTS
T ss_pred cchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 000000 0 01124577777777765 4567999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCC---cEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchH
Q psy1604 553 LQSQREQAIHDFKTKKM---KVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGA 629 (693)
Q Consensus 553 ~~~~R~~~~~~F~~g~~---~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~ 629 (693)
+..+|++++++|+++.. .+|++|.++++|||++.+++||+||+|||+..++||+||++|.||...+.++..-. ..+
T Consensus 607 ~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~-~~T 685 (800)
T 3mwy_W 607 PSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVS-KDT 685 (800)
T ss_dssp CHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEE-TTS
T ss_pred CHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEec-CCC
Confidence 99999999999998654 48999999999999999999999999999999999999999999987665543211 234
Q ss_pred HHHHHHHHHHHcCCCchhHHh
Q psy1604 630 IAKDLVRILEQAGQPVPEFLK 650 (693)
Q Consensus 630 ~~~~l~~~l~~~~~~vp~~l~ 650 (693)
+...+.+.+..+..-.-..+.
T Consensus 686 iEe~i~~~~~~K~~l~~~vi~ 706 (800)
T 3mwy_W 686 VEEEVLERARKKMILEYAIIS 706 (800)
T ss_dssp HHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 555666666655544333333
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=6.1e-32 Score=269.45 Aligned_cols=203 Identities=32% Similarity=0.503 Sum_probs=171.3
Q ss_pred cCCCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcc
Q psy1604 189 SGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELV 268 (693)
Q Consensus 189 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~ 268 (693)
+++..|.+..+|++++|++.+.+.|++.||.+|+++|.++++.+++++++++++|||+|||++|++|+++.+....
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~---- 90 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN---- 90 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS----
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC----
Confidence 3455677788999999999999999999999999999999999999999999999999999999999999886542
Q ss_pred cCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCC-CeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCC
Q psy1604 269 TGYCAQPEVIICAPTRELVMQIHEVACKYAYSS-VLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLA 347 (693)
Q Consensus 269 ~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~ 347 (693)
.++++||++||++|+.|+++.+.++.... ++++..++|+.....+...+ .+++|+|+||++|.+++..+.+.+.
T Consensus 91 ----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 ----LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp ----CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred ----CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccc
Confidence 34589999999999999999999997654 78888899988776655544 4799999999999999988888889
Q ss_pred ceeEEEEccchhhhhCC-chHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 348 SVRFVVLDEADRMLDMG-FLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 348 ~~~~lVlDEah~l~~~~-~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
++++||+||||++.+++ |...+..++.... ...|+++||||+++.+..+...+
T Consensus 166 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~----~~~~~l~lSAT~~~~~~~~~~~~ 219 (230)
T 2oxc_A 166 SIRLFILDEADKLLEEGSFQEQINWIYSSLP----ASKQMLAVSATYPEFLANALTKY 219 (230)
T ss_dssp GCCEEEESSHHHHHSTTSSHHHHHHHHHHSC----SSCEEEEEESCCCHHHHHHHTTT
T ss_pred cCCEEEeCCchHhhcCcchHHHHHHHHHhCC----CCCeEEEEEeccCHHHHHHHHHH
Confidence 99999999999999987 8999888887643 36799999999998887766554
No 61
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=5.9e-32 Score=279.86 Aligned_cols=196 Identities=27% Similarity=0.391 Sum_probs=169.5
Q ss_pred CCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCC
Q psy1604 194 PRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGY 271 (693)
Q Consensus 194 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~ 271 (693)
...+.+|++++|++.+++.|..+||.+||++|.++++.++++ +|+++++|||||||++|++|+++++...
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-------- 159 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------- 159 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--------
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--------
Confidence 345788999999999999999999999999999999999987 9999999999999999999999988654
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHHhcC-CCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhc-CCcCCCce
Q psy1604 272 CAQPEVIICAPTRELVMQIHEVACKYAYS-SVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDR-GRISLASV 349 (693)
Q Consensus 272 ~~~~~vLil~Ptr~La~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~-~~~~l~~~ 349 (693)
..++++|||+|||+|+.|+++.+.++... ..+.+...+|+....... ..+++|+|+||++|++++.+ +.+.+.++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 23568999999999999999999998765 367888888876643322 45789999999999999966 55778999
Q ss_pred eEEEEccchhhhh-CCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 350 RFVVLDEADRMLD-MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 350 ~~lVlDEah~l~~-~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
++|||||||+|++ .+|...+..++.... ...|+++||||++..+..++..+
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~----~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLP----RNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSC----TTCEEEEEESCCCHHHHHHHHHH
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCC----CCCEEEEEeccCCHHHHHHHHHH
Confidence 9999999999998 688888888876542 37899999999999998887776
No 62
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.2e-32 Score=272.73 Aligned_cols=202 Identities=31% Similarity=0.452 Sum_probs=167.8
Q ss_pred CCCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccC
Q psy1604 191 DNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTG 270 (693)
Q Consensus 191 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~ 270 (693)
.+.+.++.+|++++|++.+++.|.+.||..|+++|.++++.+++++++++++|||||||++|++|+++.+...
T Consensus 23 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~------- 95 (237)
T 3bor_A 23 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE------- 95 (237)
T ss_dssp ----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-------
T ss_pred CCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-------
Confidence 4456678899999999999999999999999999999999999999999999999999999999999987543
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcC-CcEEEechhhHHHHHhcCCcCCCce
Q psy1604 271 YCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKG-CNILVATMGRLKDILDRGRISLASV 349 (693)
Q Consensus 271 ~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~-~~IlV~Tp~~L~~~l~~~~~~l~~~ 349 (693)
..++++||++||++|+.|+++.+.++....++.+..++|+.........+..+ ++|+|+||++|.+++.++.+.+.++
T Consensus 96 -~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 96 -FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred -CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 23458999999999999999999999887788888888887766655555554 8999999999999999888888999
Q ss_pred eEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 350 RFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 350 ~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
++||+||||++.+++|...+..++.... ...|+++||||+|+.+..+...+
T Consensus 175 ~~lViDEah~~~~~~~~~~l~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~ 225 (237)
T 3bor_A 175 KMFVLDEADEMLSRGFKDQIYEIFQKLN----TSIQVVLLSATMPTDVLEVTKKF 225 (237)
T ss_dssp CEEEEESHHHHHHTTCHHHHHHHHHHSC----TTCEEEEECSSCCHHHHHHHHHH
T ss_pred cEEEECCchHhhccCcHHHHHHHHHhCC----CCCeEEEEEEecCHHHHHHHHHH
Confidence 9999999999999999999988887643 36899999999999888877665
No 63
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=8.1e-32 Score=271.57 Aligned_cols=199 Identities=37% Similarity=0.586 Sum_probs=178.4
Q ss_pred CCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCC
Q psy1604 194 PRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCA 273 (693)
Q Consensus 194 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~ 273 (693)
+.+..+|++++|++.+.+.|+++||..|+++|.++++.+++++++++++|||||||++|++|+++.+...+ .
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~--------~ 110 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP--------Q 110 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--------C
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC--------C
Confidence 34567899999999999999999999999999999999999999999999999999999999999887653 3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhc-CCcCCCceeEE
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDR-GRISLASVRFV 352 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~-~~~~l~~~~~l 352 (693)
++++||++||++|+.|+++.++++....++++..++|+.....+...+..+++|+|+||++|.+.+.+ ..+.+.++++|
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~l 190 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYL 190 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEE
Confidence 45799999999999999999999987778899999999888777777788999999999999999876 45678899999
Q ss_pred EEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 353 VLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 353 VlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
|+||||++.+.+|...+..++.... ...|+++||||++..+..++..+
T Consensus 191 ViDEah~l~~~~~~~~l~~i~~~~~----~~~~~l~~SAT~~~~v~~~~~~~ 238 (249)
T 3ber_A 191 VMDEADRILNMDFETEVDKILKVIP----RDRKTFLFSATMTKKVQKLQRAA 238 (249)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHSSC----SSSEEEEEESSCCHHHHHHHHHH
T ss_pred EEcChhhhhccChHHHHHHHHHhCC----CCCeEEEEeccCCHHHHHHHHHH
Confidence 9999999999999999999987642 36899999999999888876665
No 64
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.5e-31 Score=261.96 Aligned_cols=195 Identities=31% Similarity=0.533 Sum_probs=174.2
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeE
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEV 277 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~v 277 (693)
.+|++++|++.+++.|.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|+++.+... ..++++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--------~~~~~~ 74 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--------KDNIQA 74 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--------SCSCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--------CCCeeE
Confidence 469999999999999999999999999999999999999999999999999999999999887543 234589
Q ss_pred EEEcCCHHHHHHHHHHHHHHhcCC-CeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEcc
Q psy1604 278 IICAPTRELVMQIHEVACKYAYSS-VLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDE 356 (693)
Q Consensus 278 Lil~Ptr~La~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDE 356 (693)
||++||++|+.|+++.+.++.... ++++..++|+.........+..+++|+|+||++|.+.+.++...+.++++||+||
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 154 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEC
Confidence 999999999999999999988665 7888889999887777777778899999999999999998888889999999999
Q ss_pred chhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 357 ADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 357 ah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
||++.+.++...+..++.... .+.|+++||||+|..+..+...+
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~----~~~~~l~~SAT~~~~~~~~~~~~ 198 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLP----KNRQILLYSATFPLSVQKFMNSH 198 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSC----TTCEEEEEESCCCHHHHHHHHHH
T ss_pred hHHhHhhCcHHHHHHHHHhCC----ccceEEEEEeeCCHHHHHHHHHH
Confidence 999999999999998887643 36799999999999888776655
No 65
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.98 E-value=4e-32 Score=268.71 Aligned_cols=196 Identities=32% Similarity=0.508 Sum_probs=172.0
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCe
Q psy1604 197 IESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPE 276 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~ 276 (693)
..+|++++|++.+.+.+++.||.+|+++|.++++.+++++++++++|||+|||++|++|+++.+.... .+++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--------~~~~ 74 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER--------AEVQ 74 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS--------CSCC
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc--------CCce
Confidence 46799999999999999999999999999999999999999999999999999999999999876432 3458
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhcCC----CeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEE
Q psy1604 277 VIICAPTRELVMQIHEVACKYAYSS----VLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFV 352 (693)
Q Consensus 277 vLil~Ptr~La~Q~~~~~~~~~~~~----~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~l 352 (693)
+||++||++|+.|+++.+.++.... .+.+..++|+.........+..+++|+|+||++|.+.+.++.+.+.++++|
T Consensus 75 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 154 (219)
T 1q0u_A 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHIL 154 (219)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEE
Confidence 9999999999999999999988655 678888888877655555555678999999999999998887888999999
Q ss_pred EEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 353 VLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 353 VlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
|+||||++.++++...+..++.... ...|+++||||+|+++..+...+
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~----~~~~~l~~SAT~~~~~~~~~~~~ 202 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMP----KDLQMLVFSATIPEKLKPFLKKY 202 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSC----TTCEEEEEESCCCGGGHHHHHHH
T ss_pred EEcCchHHhhhChHHHHHHHHHhCC----cccEEEEEecCCCHHHHHHHHHH
Confidence 9999999999999999999887643 36799999999999888776655
No 66
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.98 E-value=3.9e-31 Score=264.76 Aligned_cols=202 Identities=36% Similarity=0.501 Sum_probs=174.4
Q ss_pred CCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCC
Q psy1604 194 PRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCA 273 (693)
Q Consensus 194 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~ 273 (693)
+.++.+|+++++++.+.+.|.+.||..|+++|.++++.+++++++++++|||+|||++|++|+++.+....... ..
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~----~~ 96 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTS----TD 96 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCG----GG
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccc----cC
Confidence 45677899999999999999999999999999999999999999999999999999999999999887643211 24
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcC-CcCCCceeEE
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRG-RISLASVRFV 352 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~-~~~l~~~~~l 352 (693)
++++||++||++|+.|+++.+.++....++.+..++|+.........+ .+++|+|+||++|.+.+.+. .+.+.++++|
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~l 175 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQML 175 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEE
Confidence 568999999999999999999999888788999999988766655544 57899999999999988765 4677899999
Q ss_pred EEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 353 VLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 353 VlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
|+||||++.+++|...+..++.... ...|+++||||+++.+..++..+
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~~----~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENLP----KKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTSC----TTSEEEEEESSCCHHHHHHHHHS
T ss_pred EEeChHHHhcCCcHHHHHHHHHhCC----CCCeEEEEEeeCCHHHHHHHHHh
Confidence 9999999999999999999987643 36799999999999887766554
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.9e-31 Score=271.01 Aligned_cols=199 Identities=36% Similarity=0.481 Sum_probs=172.9
Q ss_pred CccccCC--CCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCC
Q psy1604 198 ESFESAG--LREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQP 275 (693)
Q Consensus 198 ~~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~ 275 (693)
.+|++++ +++.+++.|+.+||.+|+++|.++++.++.++++++++|||||||++|++|+++.+....... ..++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~----~~~~ 127 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMP----RNGT 127 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCG----GGCC
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccc----cCCc
Confidence 3455665 899999999999999999999999999999999999999999999999999999987643211 2356
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC-cCCCceeEEEE
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR-ISLASVRFVVL 354 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~-~~l~~~~~lVl 354 (693)
++||++||++|+.|+++.++++....+..+..++|+.........+..+++|+|+||+++.+++.... +.+.++++|||
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 89999999999999999999999888889999999998888777788889999999999999887653 67889999999
Q ss_pred ccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 355 DEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 355 DEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
||||++.+++|...+..++.... ...|+++||||+++.+..++..+
T Consensus 208 DEah~l~~~~~~~~l~~i~~~~~----~~~q~l~~SAT~~~~v~~~~~~~ 253 (262)
T 3ly5_A 208 DEADRILDVGFEEELKQIIKLLP----TRRQTMLFSATQTRKVEDLARIS 253 (262)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHSC----SSSEEEEECSSCCHHHHHHHHHH
T ss_pred cChHHHhhhhHHHHHHHHHHhCC----CCCeEEEEEecCCHHHHHHHHHH
Confidence 99999999999999999987643 36799999999999988876654
No 68
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.98 E-value=2.3e-31 Score=264.25 Aligned_cols=200 Identities=31% Similarity=0.491 Sum_probs=169.9
Q ss_pred CCCCCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCC
Q psy1604 192 NPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGY 271 (693)
Q Consensus 192 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~ 271 (693)
+.++++.+|++++|++.+++.+++.||..|+|+|.++++.+++++++++++|||+|||++|++|+++.+...
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-------- 79 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-------- 79 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--------
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc--------
Confidence 345667889999999999999999999999999999999999999999999999999999999999988544
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeE
Q psy1604 272 CAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRF 351 (693)
Q Consensus 272 ~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 351 (693)
..++++||++||++|+.|+++.+.++....++++..++|+.........+. .++|+|+||++|.+.+.+....+.++++
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 158 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKM 158 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcE
Confidence 234589999999999999999999998888889999998877655544443 3899999999999999888888899999
Q ss_pred EEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 352 VVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 352 lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
||+||||++.+.++...+..++.... ...|+++||||+++.+..+...+
T Consensus 159 iViDEah~~~~~~~~~~l~~i~~~~~----~~~~~i~lSAT~~~~~~~~~~~~ 207 (224)
T 1qde_A 159 FILDEADEMLSSGFKEQIYQIFTLLP----PTTQVVLLSATMPNDVLEVTTKF 207 (224)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHSC----TTCEEEEEESSCCHHHHHHHHHH
T ss_pred EEEcChhHHhhhhhHHHHHHHHHhCC----ccCeEEEEEeecCHHHHHHHHHH
Confidence 99999999999999999988887642 36799999999999888776665
No 69
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.98 E-value=4.4e-31 Score=258.72 Aligned_cols=195 Identities=38% Similarity=0.595 Sum_probs=173.3
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEE
Q psy1604 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVI 278 (693)
Q Consensus 199 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vL 278 (693)
+|++++|++.+.+.+++.||..|+|+|.++++.+++++++++++|||+|||++|++|+++.+...... ..++++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~-----~~~~~~l 76 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQER-----GRKPRAL 76 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCT-----TCCCSEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-----CCCCcEE
Confidence 58899999999999999999999999999999999999999999999999999999999988654321 3456899
Q ss_pred EEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccch
Q psy1604 279 ICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 358 (693)
Q Consensus 279 il~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah 358 (693)
|++||++|+.|+++.+.++... +++..++|+.....+...+..+++|+|+||+++.+++.++.+.+.++++||+||||
T Consensus 77 il~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 77 VLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp EECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred EEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 9999999999999999998754 67888899888777777777889999999999999999888889999999999999
Q ss_pred hhhhCCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 359 RMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 359 ~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
++.+.++...+..++.... ...|+++||||+++.+..+...+
T Consensus 155 ~~~~~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATP----PSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSC----TTSEEEEECSSCCHHHHHHHHHH
T ss_pred HhhccchHHHHHHHHHhCC----ccCeEEEEEEecCHHHHHHHHHH
Confidence 9999999999999887632 37899999999999888776655
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=9.2e-32 Score=270.95 Aligned_cols=210 Identities=34% Similarity=0.503 Sum_probs=175.7
Q ss_pred eeeecCCCCCCCCCccccC----CCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 185 EVKVSGDNPPRPIESFESA----GLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 185 ~v~~~~~~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.+.+.+.+.|.|+.+|+++ ++++.+++.+.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|+++.+
T Consensus 12 ~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 12 KIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp TEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 4677888999999999987 899999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHH-HHHHhcCCcEEEechhhHHHHH
Q psy1604 261 LESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHF-NRQLEKGCNILVATMGRLKDIL 339 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~-~~~~~~~~~IlV~Tp~~L~~~l 339 (693)
.... ..++++||++||++|+.|+++.+.++....++.+..++++...... ......+++|+|+||++|.+++
T Consensus 92 ~~~~-------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l 164 (245)
T 3dkp_A 92 KQPA-------NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLL 164 (245)
T ss_dssp CSCC-------SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHH
T ss_pred hhcc-------cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHH
Confidence 6432 2456899999999999999999999988777777766654322211 1122457899999999999999
Q ss_pred hcC--CcCCCceeEEEEccchhhhh---CCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 340 DRG--RISLASVRFVVLDEADRMLD---MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 340 ~~~--~~~l~~~~~lVlDEah~l~~---~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
.+. .+.+.++++||+||||++.+ .+|...+..++..... .+.|+++||||+|.++..+...+
T Consensus 165 ~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~SAT~~~~v~~~~~~~ 231 (245)
T 3dkp_A 165 KQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS---HKVRRAMFSATFAYDVEQWCKLN 231 (245)
T ss_dssp HSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC---TTCEEEEEESSCCHHHHHHHHHH
T ss_pred HhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC---CCcEEEEEeccCCHHHHHHHHHh
Confidence 876 46788999999999999998 5788888888755322 36799999999999988877665
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=3.2e-30 Score=282.92 Aligned_cols=372 Identities=18% Similarity=0.194 Sum_probs=238.4
Q ss_pred CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 217 NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
|. +|+++|.-+...+..|+ |+.+.||+|||+++.+|++-..+. +..+.|++|++.||.|-++++..
T Consensus 73 g~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-----------G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 73 GM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-----------GKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp SC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-----------CCceEEEeccHHHHHhHHHHHHH
Confidence 54 79999999998888877 999999999999999999855543 33589999999999999999999
Q ss_pred HhcCCCeeEEEEeCC--------------------------------------------------CChHHHHHHHhcCCc
Q psy1604 297 YAYSSVLKICLHYGG--------------------------------------------------ASSMHFNRQLEKGCN 326 (693)
Q Consensus 297 ~~~~~~l~~~~~~gg--------------------------------------------------~~~~~~~~~~~~~~~ 326 (693)
+....++++.+++.. ..... +...-.||
T Consensus 139 l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~D 216 (822)
T 3jux_A 139 VYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLCD 216 (822)
T ss_dssp HHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHSS
T ss_pred HHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcCC
Confidence 998899999998872 12222 22223589
Q ss_pred EEEechhhH-HHHHhcCC------cCCCceeEEEEccchhhhh-CC---------------chHHHHHHhccCCCC----
Q psy1604 327 ILVATMGRL-KDILDRGR------ISLASVRFVVLDEADRMLD-MG---------------FLGDIQHVMQHSTMP---- 379 (693)
Q Consensus 327 IlV~Tp~~L-~~~l~~~~------~~l~~~~~lVlDEah~l~~-~~---------------~~~~i~~i~~~~~~~---- 379 (693)
|+++|...| .++|+.+. .-...+.+.||||+|.++= .. .+..+..+...+...
T Consensus 217 ItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~ 296 (822)
T 3jux_A 217 VTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFT 296 (822)
T ss_dssp EEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEE
T ss_pred CEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEE
Confidence 999999888 56665432 2245689999999998762 11 123333333332110
Q ss_pred CCCCcceEEeecc-C--------------chh--HHhhhh-------------hhhhh---------chhh---------
Q psy1604 380 DVANRQTLMFSAT-F--------------PET--IQKKGC-------------NILVA---------TMGR--------- 411 (693)
Q Consensus 380 ~~~~~q~lllSAT-~--------------~~~--~~~~~~-------------~~~~~---------~~~~--------- 411 (693)
-....+.+.+|-. . +.. +..... .+++. ..++
T Consensus 297 vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~ 376 (822)
T 3jux_A 297 VDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSG 376 (822)
T ss_dssp ECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGG
T ss_pred EEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCch
Confidence 0112233333321 0 000 000000 00000 0000
Q ss_pred -hHHHH---hhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCch---hhhcceE--EEE
Q psy1604 412 -LKDIL---DRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPE---TIQKNYI--FIA 482 (693)
Q Consensus 412 -l~~~l---~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~---~l~~~~~--~~~ 482 (693)
+.+.+ ..-.+...+.....+.-...+.... ...-++.|..+ .+.+.|- .+.
T Consensus 377 GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~--------------------kL~GMTGTa~te~~Ef~~iY~l~vv~ 436 (822)
T 3jux_A 377 GLHQAIEAKEGVPIKEESITYATITFQNYFRMYE--------------------KLAGMTGTAKTEESEFVQVYGMEVVV 436 (822)
T ss_dssp GHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSS--------------------EEEEEESSCGGGHHHHHHHSCCCEEE
T ss_pred HHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhh--------------------HHeEECCCCchHHHHHHHHhCCeEEE
Confidence 11222 2234554444444333222111000 01111122111 1111111 011
Q ss_pred eecccccccce-eEEEEEccchhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHH
Q psy1604 483 VGIIGGASTDV-VQTILEVPKQQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQ 559 (693)
Q Consensus 483 ~~~~~~~~~~~-~~~~~~~~~~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~ 559 (693)
+.. ....... .+.........|...+.+.+.. ..+.++||||+|++.++.++..|.+.++++..+||++.+.++..
T Consensus 437 IPt-nkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~i 515 (822)
T 3jux_A 437 IPT-HKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEI 515 (822)
T ss_dssp CCC-SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHH
T ss_pred ECC-CCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHH
Confidence 110 0111111 1224556778899999988876 35778999999999999999999999999999999966666666
Q ss_pred HHHHHhcCCCcEEEEeCcccccCCCC--------CCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCc
Q psy1604 560 AIHDFKTKKMKVLVATAVASRGLDIK--------GIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQD 627 (693)
Q Consensus 560 ~~~~F~~g~~~ILVaT~v~~~GiDip--------~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d 627 (693)
+...|+.| .|+|||++++||+||+ +..+||++++|.|...|.||+|||||.|.+|.+++|++.+++
T Consensus 516 i~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 516 VAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp HHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred HHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 66666666 6999999999999998 567999999999999999999999999999999999997653
No 72
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1.1e-30 Score=258.48 Aligned_cols=198 Identities=26% Similarity=0.447 Sum_probs=169.6
Q ss_pred CCCCccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCC
Q psy1604 195 RPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQ 274 (693)
Q Consensus 195 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~ 274 (693)
....+|++++|++.+.+.|.+.||..|+++|.++++.+++++++++++|||+|||++|++|++..+... ..+
T Consensus 11 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--------~~~ 82 (220)
T 1t6n_A 11 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQ 82 (220)
T ss_dssp ---CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------TTC
T ss_pred ccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--------CCC
Confidence 334579999999999999999999999999999999999999999999999999999999999887543 234
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhcCC-CeeEEEEeCCCChHHHHHHHhc-CCcEEEechhhHHHHHhcCCcCCCceeEE
Q psy1604 275 PEVIICAPTRELVMQIHEVACKYAYSS-VLKICLHYGGASSMHFNRQLEK-GCNILVATMGRLKDILDRGRISLASVRFV 352 (693)
Q Consensus 275 ~~vLil~Ptr~La~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~~~~-~~~IlV~Tp~~L~~~l~~~~~~l~~~~~l 352 (693)
+++||++||++|+.|+++.++++.... ++++..++|+.....+...+.. .++|+|+||++|.+++.+..+.+.++++|
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~l 162 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHF 162 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEE
Confidence 589999999999999999999997654 7889999999887766666654 47999999999999998888888999999
Q ss_pred EEccchhhhh-CCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 353 VLDEADRMLD-MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 353 VlDEah~l~~-~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
|+||||++.+ .++...+..++.... ...|+++||||+++.+..+...+
T Consensus 163 ViDEah~~~~~~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~~~~~~~~~ 211 (220)
T 1t6n_A 163 ILDECDKMLEQLDMRRDVQEIFRMTP----HEKQVMMFSATLSKEIRPVCRKF 211 (220)
T ss_dssp EEESHHHHHSSHHHHHHHHHHHHTSC----SSSEEEEEESCCCTTTHHHHHTT
T ss_pred EEcCHHHHhcccCcHHHHHHHHHhCC----CcCeEEEEEeecCHHHHHHHHHH
Confidence 9999999987 477777777776532 36899999999999887776655
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=1.5e-29 Score=297.68 Aligned_cols=336 Identities=14% Similarity=0.119 Sum_probs=210.2
Q ss_pred CCCHHHHhhhhhhhc--------------CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHH
Q psy1604 220 KPTPIQKYAIPAGLE--------------GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRE 285 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~--------------g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 285 (693)
.|+|+|.+|++.++. +++.+++++||||||+++ ++++..+... ....++|||+|+++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~--------~~~~rvLvlvpr~e 341 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL--------DFIDKVFFVVDRKD 341 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--------TTCCEEEEEECGGG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--------CCCceEEEEeCcHH
Confidence 599999999999875 368999999999999996 6666554322 12358999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHh-cCCcEEEechhhHHHHHhcCC--cCCCceeEEEEccchhhhh
Q psy1604 286 LVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLE-KGCNILVATMGRLKDILDRGR--ISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 286 La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~-~~~~IlV~Tp~~L~~~l~~~~--~~l~~~~~lVlDEah~l~~ 362 (693)
|+.|+.+.+.++.... +.++.+.......+. .+++|+|+||++|..++.... ..+..+.+||+||||++..
T Consensus 342 L~~Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp CCHHHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc
Confidence 9999999999986431 234445555555553 578999999999999886542 2456789999999999864
Q ss_pred CCchHHHHHHhccCCCCCCCCcceEEeeccCchhHHh-----hhhhhh-hhchhhhHHHHhhccccccceeEEEechhhh
Q psy1604 363 MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQK-----KGCNIL-VATMGRLKDILDRGRISLASVRFVVLDEADR 436 (693)
Q Consensus 363 ~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~-----~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~ 436 (693)
..+ ...+.... ++.++++|||||...... ....|- ......+...+....+.. +......
T Consensus 416 ~~~---~~~I~~~~-----p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p--~~v~y~~---- 481 (1038)
T 2w00_A 416 GEA---QKNLKKKF-----KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLK--FKVDYND---- 481 (1038)
T ss_dssp HHH---HHHHHHHC-----SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCC--EEEEECC----
T ss_pred hHH---HHHHHHhC-----CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCC--eEEEEEe----
Confidence 332 33444332 257999999998643210 000000 000000111111110000 0000000
Q ss_pred hhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEEeecccccccceeEEEEEccchhHHHHHHHHH-h-
Q psy1604 437 MLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELL-R- 514 (693)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l-~- 514 (693)
....+. ..... ... .....+.+. .......+...+.+.+ .
T Consensus 482 -----------------------------v~~~~~-~~~~e-----~d~--~~~~~i~~~-~~l~~~~ri~~I~~~Il~~ 523 (1038)
T 2w00_A 482 -----------------------------VRPQFK-SLETE-----TDE--KKLSAAENQ-QAFLHPMRIQEITQYILNN 523 (1038)
T ss_dssp -----------------------------CCGGGH-HHHTC-----CCH--HHHHHTCST-TTTTCHHHHHHHHHHHHHH
T ss_pred -----------------------------ccchhh-hcccc-----ccH--HHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence 000000 00000 000 000000000 0001223333333222 2
Q ss_pred --cc--------CCCcEEEEecChHhHHHHHHHHhhCC------------Cce-EEecCC----------C---------
Q psy1604 515 --EK--------DEDGVIVFVSTIRNADFIACYLCETE------------IAT-TSIHGS----------R--------- 552 (693)
Q Consensus 515 --~~--------~~~kvLVF~~s~~~a~~l~~~L~~~~------------~~v-~~lhg~----------~--------- 552 (693)
.. ...++||||+++..|..+++.|.+.+ +++ ..+|++ +
T Consensus 524 ~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~ 603 (1038)
T 2w00_A 524 FRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSA 603 (1038)
T ss_dssp HHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGG
T ss_pred HHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccc
Confidence 11 34579999999999999999997643 445 445542 2
Q ss_pred -CH-----------------------------HHHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhh
Q psy1604 553 -LQ-----------------------------SQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEY 602 (693)
Q Consensus 553 -~~-----------------------------~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y 602 (693)
++ ..|..++++|++|+++|||+|+++.+|+|+|.+ +++++|.|.+...|
T Consensus 604 ~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~l 682 (1038)
T 2w00_A 604 MDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGL 682 (1038)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccce
Confidence 22 147889999999999999999999999999999 78899999999999
Q ss_pred hhhhcccccCCCc----ceEEEEeC
Q psy1604 603 VHRIGRTGRVGNK----GRATSFYD 623 (693)
Q Consensus 603 ~Qr~GRagR~G~~----G~~~~~~~ 623 (693)
+||+||++|.+.. |.++.|+.
T Consensus 683 iQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 683 MQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred eehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999764 66666665
No 74
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=3.6e-29 Score=240.84 Aligned_cols=179 Identities=41% Similarity=0.579 Sum_probs=153.3
Q ss_pred cceEEEEeecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHH
Q psy1604 476 KNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQS 555 (693)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~ 555 (693)
.++..+.++.......++.|.+..+....|...|.+++... ..++||||+++..++.++..|...++.+..+||+|++.
T Consensus 13 ~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~ 91 (191)
T 2p6n_A 13 LGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQE 91 (191)
T ss_dssp ---------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHH
T ss_pred CCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 34555666666667788999999999999999999999865 45899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHH
Q psy1604 556 QREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLV 635 (693)
Q Consensus 556 ~R~~~~~~F~~g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~ 635 (693)
+|.++++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++|+++.++..+++.+.
T Consensus 92 ~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~ 171 (191)
T 2p6n_A 92 ERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLK 171 (191)
T ss_dssp HHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877888999999
Q ss_pred HHHHHcCCCchhHHhccCCC
Q psy1604 636 RILEQAGQPVPEFLKFGGGG 655 (693)
Q Consensus 636 ~~l~~~~~~vp~~l~~~~~~ 655 (693)
+.+....+.+|++|.++++|
T Consensus 172 ~~l~~~~~~~p~~l~~~~~g 191 (191)
T 2p6n_A 172 ALLLEAKQKVPPVLQVLHCG 191 (191)
T ss_dssp HHHHHTTCCCCHHHHSTTC-
T ss_pred HHHHHccCcCCHHHHhhcCC
Confidence 99999999999999999864
No 75
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=229.05 Aligned_cols=166 Identities=47% Similarity=0.732 Sum_probs=141.7
Q ss_pred ccccceeEEEEEccchhHHHHHHHHHhcc-CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhc
Q psy1604 488 GASTDVVQTILEVPKQQKKKKLLELLREK-DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKT 566 (693)
Q Consensus 488 ~~~~~~~~~~~~~~~~~k~~~L~~~l~~~-~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~ 566 (693)
....++.|.+..+....|...|.+++... ...++||||+++..++.++..|...++.+..+||+|++.+|..++++|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 34667889999999999999999999875 57899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCch
Q psy1604 567 KKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVP 646 (693)
Q Consensus 567 g~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp 646 (693)
|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|++|.|++|+++ .+....+.+.+.+....+++|
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECG-GGGGGHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEch-hhHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999985 467788999999999999999
Q ss_pred hHHhccCC
Q psy1604 647 EFLKFGGG 654 (693)
Q Consensus 647 ~~l~~~~~ 654 (693)
++|.+++.
T Consensus 174 ~~l~~~a~ 181 (185)
T 2jgn_A 174 SWLENMAY 181 (185)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998875
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=8e-26 Score=252.61 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=113.1
Q ss_pred CCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 216 SNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 216 ~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
.|+ +|+++|..+++.+++|+ +++++||+|||++|++|++...+. +..++||+||++||.|.++++.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-----------G~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-----------GKGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-----------CSCCEEEESSHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-----------CCCEEEEeCCHHHHHHHHHHHH
Confidence 688 99999999999999998 999999999999999999655432 2358999999999999999999
Q ss_pred HHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhH-HHHHhcCC------cCCC---ceeEEEEccchhhh
Q psy1604 296 KYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRL-KDILDRGR------ISLA---SVRFVVLDEADRML 361 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L-~~~l~~~~------~~l~---~~~~lVlDEah~l~ 361 (693)
.+....++++.+++|+.+... +....+++|+|+||++| .+++..+. +.+. ++.++||||+|+|+
T Consensus 142 ~l~~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 142 PVYRGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999999999999999987543 33445799999999999 88887653 4577 89999999999987
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=6.3e-26 Score=258.65 Aligned_cols=121 Identities=25% Similarity=0.338 Sum_probs=109.7
Q ss_pred hHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCccccc
Q psy1604 504 QKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRG 581 (693)
Q Consensus 504 ~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~G 581 (693)
.+...++..+.. ..+.++||||+++..++.+++.|.+.++++..+||++++.+|.++++.|++|+++|||||+++++|
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~G 502 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREG 502 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTT
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcC
Confidence 344555554543 356799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCC-----CCChhhhhhhhcccccCCCcceEEEEeCCC
Q psy1604 582 LDIKGIRHVINYDL-----PQEIDEYVHRIGRTGRVGNKGRATSFYDPD 625 (693)
Q Consensus 582 iDip~v~~VI~~d~-----p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~ 625 (693)
+|+|++++||++|. |+|..+|+||+|||||. ..|.|++|+++.
T Consensus 503 lDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~ 550 (664)
T 1c4o_A 503 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-ARGEVWLYADRV 550 (664)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTS-TTCEEEEECSSC
T ss_pred ccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcC-CCCEEEEEEcCC
Confidence 99999999999997 89999999999999999 489999999865
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=2.6e-27 Score=224.29 Aligned_cols=161 Identities=29% Similarity=0.520 Sum_probs=145.2
Q ss_pred cceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Q psy1604 491 TDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMK 570 (693)
Q Consensus 491 ~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ 570 (693)
..+.|.+..+....|...|.++++.....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 45678888888899999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHh
Q psy1604 571 VLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLK 650 (693)
Q Consensus 571 ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~ 650 (693)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.++...++.+.+.+.....++|.+++
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 163 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC----
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhhc
Confidence 99999999999999999999999999999999999999999999999999998766667788888888777777777654
Q ss_pred c
Q psy1604 651 F 651 (693)
Q Consensus 651 ~ 651 (693)
.
T Consensus 164 ~ 164 (172)
T 1t5i_A 164 I 164 (172)
T ss_dssp -
T ss_pred h
Confidence 4
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=2.1e-26 Score=216.15 Aligned_cols=152 Identities=34% Similarity=0.548 Sum_probs=139.8
Q ss_pred ccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcC
Q psy1604 488 GASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTK 567 (693)
Q Consensus 488 ~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g 567 (693)
....++.+.+..+....|...|.+++......++||||+++..++.+++.|...++.+..+||+|++.+|..++++|++|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 34556788888899999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHH
Q psy1604 568 KMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQ 640 (693)
Q Consensus 568 ~~~ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~ 640 (693)
+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++|+.+. +..+++.+.+.+..
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~~~~~ 156 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAF-EKRFLADIEEYIGF 156 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGG-GHHHHHHHHHHHTS
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHH-HHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999854 56677777766543
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=2.8e-26 Score=215.88 Aligned_cols=159 Identities=26% Similarity=0.487 Sum_probs=137.8
Q ss_pred ceeEEEEEccchh-HHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Q psy1604 492 DVVQTILEVPKQQ-KKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMK 570 (693)
Q Consensus 492 ~~~~~~~~~~~~~-k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ 570 (693)
++.|.+..+.... |...|.++++....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 4566676777666 999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcCCCchhHHh
Q psy1604 571 VLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLK 650 (693)
Q Consensus 571 ILVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~~~vp~~l~ 650 (693)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.|++|+++. +......+.+.+....+++|..+.
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETT-THHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcch-HHHHHHHHHHHHccCccccCccHH
Confidence 9999999999999999999999999999999999999999999999999999854 566777788877776666665544
Q ss_pred c
Q psy1604 651 F 651 (693)
Q Consensus 651 ~ 651 (693)
+
T Consensus 162 ~ 162 (165)
T 1fuk_A 162 T 162 (165)
T ss_dssp T
T ss_pred h
Confidence 3
No 81
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=6.4e-25 Score=250.19 Aligned_cols=122 Identities=24% Similarity=0.325 Sum_probs=110.5
Q ss_pred hHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCccccc
Q psy1604 504 QKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRG 581 (693)
Q Consensus 504 ~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~G 581 (693)
.+...++..+.. ..+.++||||+++..++.+++.|.+.++++..+||++++.+|.+++++|++|+++|||||+++++|
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~G 508 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 508 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTT
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCC
Confidence 344555554543 356799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCC-----CCChhhhhhhhcccccCCCcceEEEEeCCCC
Q psy1604 582 LDIKGIRHVINYDL-----PQEIDEYVHRIGRTGRVGNKGRATSFYDPDQ 626 (693)
Q Consensus 582 iDip~v~~VI~~d~-----p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~ 626 (693)
+|+|++++||++|. |.+..+|+||+||+||. ..|.|++|+++.+
T Consensus 509 lDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 509 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKIT 557 (661)
T ss_dssp CCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCC
T ss_pred cccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCC
Confidence 99999999999997 99999999999999998 7999999998653
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.6e-25 Score=212.77 Aligned_cols=154 Identities=28% Similarity=0.457 Sum_probs=134.4
Q ss_pred ccceeEEEEEccchh-HHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCC
Q psy1604 490 STDVVQTILEVPKQQ-KKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKK 568 (693)
Q Consensus 490 ~~~~~~~~~~~~~~~-k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~ 568 (693)
..++.|.+..++... |...|.+++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 456778888887655 9999999999888889999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCcccccCCCCCCCEEEEcCCC------CChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHcC
Q psy1604 569 MKVLVATAVASRGLDIKGIRHVINYDLP------QEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAG 642 (693)
Q Consensus 569 ~~ILVaT~v~~~GiDip~v~~VI~~d~p------~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~~ 642 (693)
.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+.+. +...++.+.+.+....
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVD-ELPSLMKIQDHFNSSI 163 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGG-GHHHHHHHHHHHTCCC
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccc-hHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999 89999999999999999999999999855 4556666666665443
Q ss_pred CC
Q psy1604 643 QP 644 (693)
Q Consensus 643 ~~ 644 (693)
..
T Consensus 164 ~~ 165 (175)
T 2rb4_A 164 KQ 165 (175)
T ss_dssp EE
T ss_pred cc
Confidence 33
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=4.8e-25 Score=216.08 Aligned_cols=146 Identities=33% Similarity=0.524 Sum_probs=131.2
Q ss_pred eEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q psy1604 494 VQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLV 573 (693)
Q Consensus 494 ~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILV 573 (693)
.+.....+...|...|.+++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 34455667789999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHH
Q psy1604 574 ATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQ 640 (693)
Q Consensus 574 aT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~ 640 (693)
||+++++|||+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++. +....+.+.+.+..
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAVGR 152 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGG-GHHHHHHHHHHHSS
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchh-HHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999864 55566666665543
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=2.4e-24 Score=220.99 Aligned_cols=143 Identities=33% Similarity=0.526 Sum_probs=126.2
Q ss_pred eeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEE
Q psy1604 493 VVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVL 572 (693)
Q Consensus 493 ~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~IL 572 (693)
+.+.+..+....|.+.|.+++.....+++||||+++..++.++..|...++.+..+||+|++.+|+.+++.|++|+.+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 45667778888999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHH
Q psy1604 573 VATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVR 636 (693)
Q Consensus 573 VaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~ 636 (693)
|||+++++|||||++++||+||+|++...|+||+||+||.|+.|.|++|+++. +....+.+.+
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~-e~~~~~~ie~ 145 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALER 145 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSS-THHHHHHHHH
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999865 3344443433
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.83 E-value=2.3e-25 Score=210.69 Aligned_cols=148 Identities=34% Similarity=0.564 Sum_probs=132.0
Q ss_pred eeEEEEEccc-hhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcE
Q psy1604 493 VVQTILEVPK-QQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKV 571 (693)
Q Consensus 493 ~~~~~~~~~~-~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~I 571 (693)
+.+.+..++. ..|...|.++++.....++||||+++..++.++..|...++.+..+||+|++.+|.++++.|++|+.+|
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~v 83 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 83 (170)
Confidence 3455555566 778888999998877789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEEEEeCCCCchHHHHHHHHHHHHc
Q psy1604 572 LVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQA 641 (693)
Q Consensus 572 LVaT~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~~~~~~~~d~~~~~~l~~~l~~~ 641 (693)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +......+.+.+...
T Consensus 84 LvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 84 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH-DHLLLGKVGRYIEEP 152 (170)
Confidence 999999999999999999999999999999999999999999999999999855 555666666655443
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=206.73 Aligned_cols=172 Identities=20% Similarity=0.233 Sum_probs=124.1
Q ss_pred hCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHH-HHHH
Q psy1604 215 KSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQ-IHEV 293 (693)
Q Consensus 215 ~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q-~~~~ 293 (693)
......|+++|.++++.+++++++++++|||+|||++|++++++.+...... ....++||++|+++|+.| +.+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-----~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-----TCCCCEEEEESSHHHHHHHHHHT
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-----cCCCcEEEEECHHHHHHHHHHHH
Confidence 3455689999999999999999999999999999999999998876543211 224579999999999999 8888
Q ss_pred HHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCC------cCCCceeEEEEccchhhhhCCchH
Q psy1604 294 ACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGR------ISLASVRFVVLDEADRMLDMGFLG 367 (693)
Q Consensus 294 ~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~------~~l~~~~~lVlDEah~l~~~~~~~ 367 (693)
+.++... .+++..++|+.........+...++|+|+||++|.+.+.... ..+.++++|||||||++.+.+++.
T Consensus 103 ~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~ 181 (216)
T 3b6e_A 103 FQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYN 181 (216)
T ss_dssp HHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHH
T ss_pred HHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHH
Confidence 8888754 567777887766554444555679999999999999887643 567889999999999998877766
Q ss_pred HHHHHhccC----------CCCCCCCcceEEeecc
Q psy1604 368 DIQHVMQHS----------TMPDVANRQTLMFSAT 392 (693)
Q Consensus 368 ~i~~i~~~~----------~~~~~~~~q~lllSAT 392 (693)
.+...+... ..+..+..++++||||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 182 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 654332211 1112246799999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.86 E-value=2.5e-21 Score=216.32 Aligned_cols=103 Identities=19% Similarity=0.259 Sum_probs=68.4
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEE--EeCcccccCCCCC----CCE
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLV--ATAVASRGLDIKG----IRH 589 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILV--aT~v~~~GiDip~----v~~ 589 (693)
..++++|||++|...++.+++.|.. ++ ...++.. .+|+++++.|+.+. .||+ +|+.+++|||+|+ +++
T Consensus 382 ~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 382 NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEE
T ss_pred hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccE
Confidence 4567899999999999999998865 23 3455553 46888999999864 6777 7899999999997 899
Q ss_pred EEEcCCCCC-h-----------------------------hhhhhhhcccccCCCcceEEEEeCC
Q psy1604 590 VINYDLPQE-I-----------------------------DEYVHRIGRTGRVGNKGRATSFYDP 624 (693)
Q Consensus 590 VI~~d~p~s-~-----------------------------~~y~Qr~GRagR~G~~G~~~~~~~~ 624 (693)
||++++|.. + ..+.|.+||+.|..++--+++++++
T Consensus 456 Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 456 LVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 999999841 1 2345999999998666556666663
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.83 E-value=9.7e-21 Score=194.38 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=122.8
Q ss_pred CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 219 TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.+|+++|.++++.++++++.+++++||+|||+++++++...+... ..++||++||++|+.||.+.+.++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC----------SSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC----------CCeEEEEECCHHHHHHHHHHHHHhc
Confidence 389999999999999888899999999999999988877765432 1279999999999999999999998
Q ss_pred cCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCC
Q psy1604 299 YSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTM 378 (693)
Q Consensus 299 ~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~ 378 (693)
......+..++++..... ......+|+|+||+.+.+. ....+.++++||+||||++.+ ..+..++....
T Consensus 182 ~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~- 250 (282)
T 1rif_A 182 LFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLN- 250 (282)
T ss_dssp SCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCT-
T ss_pred ccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhh-
Confidence 777777888887765432 2235689999999987543 223467899999999999974 35566665432
Q ss_pred CCCCCcceEEeeccCchhH
Q psy1604 379 PDVANRQTLMFSATFPETI 397 (693)
Q Consensus 379 ~~~~~~q~lllSAT~~~~~ 397 (693)
...++++||||+++..
T Consensus 251 ---~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 251 ---NCMFKFGLSGSLRDGK 266 (282)
T ss_dssp ---TCCEEEEECSSCCTTS
T ss_pred ---cCCeEEEEeCCCCCcc
Confidence 2689999999997654
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.83 E-value=9.1e-19 Score=196.38 Aligned_cols=129 Identities=19% Similarity=0.096 Sum_probs=100.8
Q ss_pred CCCHHHHhhhhh----hhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPA----GLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 220 ~p~~~Q~~ai~~----il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
.|+|+|.+.+.. +..++++++.||||+|||++|++|++.. +++++|++||++|+.|+.+++.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------KPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------------CSEEEEEESSGGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------------CCeEEEEcCCHHHHHHHHHHHH
Confidence 689999997764 4478999999999999999999999971 2479999999999999999999
Q ss_pred HHhcCCCeeEEEEeCCCCh---------------------------------HHH------------------HHHHhcC
Q psy1604 296 KYAYSSVLKICLHYGGASS---------------------------------MHF------------------NRQLEKG 324 (693)
Q Consensus 296 ~~~~~~~l~~~~~~gg~~~---------------------------------~~~------------------~~~~~~~ 324 (693)
++.....+++..+.|..+. ... .+.....
T Consensus 69 ~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ 148 (551)
T 3crv_A 69 KIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYK 148 (551)
T ss_dssp TCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGG
T ss_pred HHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhc
Confidence 8876667777776653210 111 1223357
Q ss_pred CcEEEechhhHHHHHhcCCcCC-CceeEEEEccchhhhh
Q psy1604 325 CNILVATMGRLKDILDRGRISL-ASVRFVVLDEADRMLD 362 (693)
Q Consensus 325 ~~IlV~Tp~~L~~~l~~~~~~l-~~~~~lVlDEah~l~~ 362 (693)
++|+|+||..|++...+..+.+ .+..+|||||||+|.+
T Consensus 149 adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 149 ADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp CSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred CCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 8999999999998765543333 4678999999999987
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.83 E-value=6.2e-21 Score=190.23 Aligned_cols=173 Identities=16% Similarity=0.173 Sum_probs=127.3
Q ss_pred CHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHH
Q psy1604 206 REILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRE 285 (693)
Q Consensus 206 ~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 285 (693)
++.+.+.+.......++++|.++++.+.++++++++|+||||||+++.++++..+..... ....++++++|+++
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~ 120 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRI 120 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchH
Confidence 344444444445556899999999999999999999999999999999999988766542 23458999999999
Q ss_pred HHHHHHHHHHHHhcC-CCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhh-hhC
Q psy1604 286 LVMQIHEVACKYAYS-SVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRM-LDM 363 (693)
Q Consensus 286 La~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l-~~~ 363 (693)
|+.|+.+.+...... .+..+...... .......+++|+|+||++|.+++.. .++++++|||||||++ ++.
T Consensus 121 la~q~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~ 192 (235)
T 3llm_A 121 SAVSVAERVAFERGEEPGKSCGYSVRF-----ESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINT 192 (235)
T ss_dssp HHHHHHHHHHHTTTCCTTSSEEEEETT-----EEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHH
T ss_pred HHHHHHHHHHHHhccccCceEEEeech-----hhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcch
Confidence 999999888765432 22222221111 1111124578999999999999876 4789999999999986 667
Q ss_pred Cch-HHHHHHhccCCCCCCCCcceEEeeccCchhH
Q psy1604 364 GFL-GDIQHVMQHSTMPDVANRQTLMFSATFPETI 397 (693)
Q Consensus 364 ~~~-~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~ 397 (693)
++. ..+..++... ++.|+++||||++.+.
T Consensus 193 ~~~~~~l~~i~~~~-----~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 193 DFLLVVLRDVVQAY-----PEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHHHHHHC-----TTSEEEEEECSSCCHH
T ss_pred HHHHHHHHHHHhhC-----CCCeEEEEecCCCHHH
Confidence 666 3555555442 3689999999998765
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.78 E-value=8.8e-19 Score=177.53 Aligned_cols=138 Identities=14% Similarity=0.275 Sum_probs=105.0
Q ss_pred cchhHHHHHHHHHhcc--CCCcEEEEecChHhHHHHHHHHhhC-CCceEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEe
Q psy1604 501 PKQQKKKKLLELLREK--DEDGVIVFVSTIRNADFIACYLCET-EIATTSIHGSRLQSQREQAIHDFKTK-KMK-VLVAT 575 (693)
Q Consensus 501 ~~~~k~~~L~~~l~~~--~~~kvLVF~~s~~~a~~l~~~L~~~-~~~v~~lhg~~~~~~R~~~~~~F~~g-~~~-ILVaT 575 (693)
....|+..|.+++... .+.++||||+++..++.+...|... ++.+..+||++++.+|.+++++|+++ ..+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4567888888888764 7789999999999999999999885 99999999999999999999999998 677 78999
Q ss_pred CcccccCCCCCCCEEEEcCCCCChhhhhhhhcccccCCCcceEE--EEeCCCCchHHHHHHHHHHHHc
Q psy1604 576 AVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRAT--SFYDPDQDGAIAKDLVRILEQA 641 (693)
Q Consensus 576 ~v~~~GiDip~v~~VI~~d~p~s~~~y~Qr~GRagR~G~~G~~~--~~~~~~~d~~~~~~l~~~l~~~ 641 (693)
+++++|||++.+++||+||+|||+..|.||+||++|.|+.+.++ .|+..+ ++...+.+.+..+
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~---TiEe~i~~~~~~K 237 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG---TLEEKIDQLLAFK 237 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT---SHHHHHHHHHHHC
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC---CHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988764 445432 3444555555444
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.76 E-value=3.6e-18 Score=170.02 Aligned_cols=139 Identities=19% Similarity=0.145 Sum_probs=107.9
Q ss_pred CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 219 TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
..|+++|.+++..+++++++++++|||+|||++++.++... +.++||++|+++|+.||.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~~- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHHHHHHGGG-
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHHHHHHHhC-
Confidence 37999999999999999999999999999999988776542 236899999999999999999884
Q ss_pred cCCCee-EEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCC
Q psy1604 299 YSSVLK-ICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHST 377 (693)
Q Consensus 299 ~~~~l~-~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~ 377 (693)
++. +..+.|+.. ...+|+|+||+.+...... ...++++|||||||++.+..+. .++...
T Consensus 157 ---~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~- 216 (237)
T 2fz4_A 157 ---GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMS- 216 (237)
T ss_dssp ---CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTC-
T ss_pred ---CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhc-
Confidence 355 666666543 2579999999999776552 1245899999999999776543 233322
Q ss_pred CCCCCCcceEEeeccCchh
Q psy1604 378 MPDVANRQTLMFSATFPET 396 (693)
Q Consensus 378 ~~~~~~~q~lllSAT~~~~ 396 (693)
...++++||||++..
T Consensus 217 ----~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 217 ----IAPFRLGLTATFERE 231 (237)
T ss_dssp ----CCSEEEEEEESCC--
T ss_pred ----cCCEEEEEecCCCCC
Confidence 256889999998653
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.72 E-value=2.8e-16 Score=177.52 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=73.1
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC--cccccCCCCC--CCEEEE
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA--VASRGLDIKG--IRHVIN 592 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~--v~~~GiDip~--v~~VI~ 592 (693)
.++++|||++|....+.+++.|+... .. ...+++..++..++++|+ +.-.||++|. .+++|||+|+ +..||.
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~~~--~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSFEH--MK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCSCC--EE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhcc--hh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEE
Confidence 46679999999999999998886222 22 455566778999999999 8889999985 8999999976 788999
Q ss_pred cCCCCC-------------------h----------hhhhhhhcccccCCCcceEEEEeC
Q psy1604 593 YDLPQE-------------------I----------DEYVHRIGRTGRVGNKGRATSFYD 623 (693)
Q Consensus 593 ~d~p~s-------------------~----------~~y~Qr~GRagR~G~~G~~~~~~~ 623 (693)
..+|.. . ....|.+||+-|.-++--++++++
T Consensus 523 ~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 523 AGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 888742 1 112599999999866666666665
No 94
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=98.82 E-value=1.9e-09 Score=69.50 Aligned_cols=31 Identities=39% Similarity=0.963 Sum_probs=28.0
Q ss_pred CCCCCccee-cCCCCCcccCcccccCCCCCCC
Q psy1604 102 NSKPGDWMC-SCGASNFAKRDACFKCSEPKPE 132 (693)
Q Consensus 102 ~~~~gdw~~-~c~~~n~~~r~~c~~c~~~~~~ 132 (693)
|.++|||.| .|++.||++|..||+|++|++.
T Consensus 1 g~~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 1 GSSANDWQCKTCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp CCSSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCCCcccCCCCCccccccccccccCCcCCC
Confidence 457899999 5999999999999999999874
No 95
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=98.75 E-value=2.3e-09 Score=68.55 Aligned_cols=30 Identities=43% Similarity=0.998 Sum_probs=27.2
Q ss_pred CCCCccee-cCCCCCcccCcccccCCCCCCC
Q psy1604 103 SKPGDWMC-SCGASNFAKRDACFKCSEPKPE 132 (693)
Q Consensus 103 ~~~gdw~~-~c~~~n~~~r~~c~~c~~~~~~ 132 (693)
+++|||.| .|++.||++|..||+|++|+++
T Consensus 1 pk~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 1 XKFEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp -CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 36799999 6999999999999999999976
No 96
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=98.68 E-value=1.5e-08 Score=70.17 Aligned_cols=34 Identities=41% Similarity=1.014 Sum_probs=29.9
Q ss_pred CCCCCCCcceec---CCCCCcccCcccccCCCCCCCC
Q psy1604 100 RGNSKPGDWMCS---CGASNFAKRDACFKCSEPKPEG 133 (693)
Q Consensus 100 ~~~~~~gdw~~~---c~~~n~~~r~~c~~c~~~~~~~ 133 (693)
....++|||.|. |++.||++|..||+|+++++.+
T Consensus 7 ~~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 7 NFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred cCCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 345678999994 9999999999999999999875
No 97
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.59 E-value=6e-08 Score=109.39 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=83.6
Q ss_pred CHHHHhhhhhhhcCCCEEEEccCCCChh--HHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 222 TPIQKYAIPAGLEGRDLMGCAQTGSGKT--AAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 222 ~~~Q~~ai~~il~g~~vlv~a~TGsGKT--l~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
++.|+.+++.++.++.+++.+++||||| ++++++++..+.. ..+.++++++||..++.++.+.+..+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---------~~~~~vll~APTg~AA~~L~e~~~~~~~ 221 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALR 221 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---------SCCCCEEEEBSSHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---------cCCCeEEEEeCChhHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999 5566666654421 1235799999999999999888766543
Q ss_pred CCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCC
Q psy1604 300 SSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMP 379 (693)
Q Consensus 300 ~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~ 379 (693)
..++..... ...+.. ...-..++-.+|+.. . +........++++||||||+.+ + ...+..++... +
T Consensus 222 ~l~l~~~~~-~~~~~~-----~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l--~ 287 (608)
T 1w36_D 222 QLPLTDEQK-KRIPED-----ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDAL--P 287 (608)
T ss_dssp HSSCCSCCC-CSCSCC-----CBTTTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTC--C
T ss_pred cCCCCHHHH-hccchh-----hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhC--C
Confidence 222210000 000000 000012222233221 1 1111222337899999999944 4 34556666543 2
Q ss_pred CCCCcceEEee
Q psy1604 380 DVANRQTLMFS 390 (693)
Q Consensus 380 ~~~~~q~lllS 390 (693)
...|++++-
T Consensus 288 --~~~~liLvG 296 (608)
T 1w36_D 288 --DHARVIFLG 296 (608)
T ss_dssp --TTCEEEEEE
T ss_pred --CCCEEEEEc
Confidence 356777764
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.05 E-value=2.7e-05 Score=88.12 Aligned_cols=70 Identities=26% Similarity=0.310 Sum_probs=56.7
Q ss_pred CCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 218 YTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 218 ~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
+..+++.|.+|+..++.+..+++.+|+|||||.+ +..++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~-~~~~i~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ---------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH-HHHHHHHHHTS---------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH-HHHHHHHHHHc---------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999998888899999999999987 44555555542 1237999999999999998887664
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=3.8e-05 Score=88.93 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=56.6
Q ss_pred CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 217 NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
.+..+++.|++|+..++.+.-++|.||.|||||.+ +..++..+...+ +.++|+++||...+.++.+.+.+
T Consensus 357 ~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~-i~~~i~~l~~~~---------~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT-SATIVYHLSKIH---------KDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp TSCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH-HHHHHHHHHHHH---------CCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH-HHHHHHHHHhCC---------CCeEEEEcCcHHHHHHHHHHHHh
Confidence 34578999999999998877889999999999987 344444454321 23799999999999999998876
Q ss_pred H
Q psy1604 297 Y 297 (693)
Q Consensus 297 ~ 297 (693)
.
T Consensus 427 ~ 427 (802)
T 2xzl_A 427 L 427 (802)
T ss_dssp T
T ss_pred h
Confidence 5
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.92 E-value=5.9e-05 Score=87.20 Aligned_cols=71 Identities=25% Similarity=0.298 Sum_probs=57.1
Q ss_pred CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 217 NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 217 g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
....+++.|++|+..++.+.-+++.+|+|||||.+ +..++..+.... +.++|+++||...+.++.+.+.+
T Consensus 353 ~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~~---------~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 353 GLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQG---------NGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp TSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTTC---------SSCEEEEESSHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHcC---------CCcEEEEcCcHHHHHHHHHHHHH
Confidence 34578999999999998888899999999999987 455566665422 23799999999999999888765
Q ss_pred H
Q psy1604 297 Y 297 (693)
Q Consensus 297 ~ 297 (693)
.
T Consensus 423 ~ 423 (800)
T 2wjy_A 423 T 423 (800)
T ss_dssp T
T ss_pred h
Confidence 4
No 101
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.91 E-value=2.7e-05 Score=88.66 Aligned_cols=68 Identities=24% Similarity=0.266 Sum_probs=54.0
Q ss_pred CCCCHHHHhhhhhhhcCC-CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 219 TKPTPIQKYAIPAGLEGR-DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~-~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
..+.+-|++|+..++..+ -.+|++|+|||||.+ +..++..+...+ .++|+++||..-+.++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~~----------~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVKQG----------LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHHTT----------CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHhCC----------CeEEEEcCchHHHHHHHHHHHhc
Confidence 368899999999988765 478999999999987 444555555432 37999999999999998887654
No 102
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.87 E-value=7.1e-05 Score=83.43 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=51.3
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
.+++.|++++..++.++.+++.++.|||||.. +..++..+... +.++++++||...+..+.+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~----------g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL----------GLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc----------CCeEEEecCcHHHHHHhHhhh
Confidence 68899999999999999999999999999986 44455555443 246899999998888776543
No 103
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.83 E-value=0.00011 Score=74.43 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHhc--cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccc
Q psy1604 503 QQKKKKLLELLRE--KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASR 580 (693)
Q Consensus 503 ~~k~~~L~~~l~~--~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~ 580 (693)
..|+..|-++|.. ..+.++|||++..+..+.+..+|...++.+..+.|.....++ +. .+....+.+.|....-
T Consensus 108 SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~~ 182 (328)
T 3hgt_A 108 SGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGIN 182 (328)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCC
T ss_pred CccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccCCceEEEEECCCCC
Confidence 4566665555543 456799999999999999999999999999999998544322 21 2445566566776666
Q ss_pred cCC-----CCCCCEEEEcCCCCChhhh-hhhhcccccCC--C--cceEEEEeCCC
Q psy1604 581 GLD-----IKGIRHVINYDLPQEIDEY-VHRIGRTGRVG--N--KGRATSFYDPD 625 (693)
Q Consensus 581 GiD-----ip~v~~VI~~d~p~s~~~y-~Qr~GRagR~G--~--~G~~~~~~~~~ 625 (693)
|+| +...+.||.||..|++..= +|.+-|+.|.| + +-.++.+++..
T Consensus 183 gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 183 FTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp TTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred CcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 776 6789999999999999985 99999999873 3 34566666643
No 104
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.77 E-value=3.7e-05 Score=83.74 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=52.8
Q ss_pred hCCCCCCCHHHHhhhhhhhcC-----CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHH
Q psy1604 215 KSNYTKPTPIQKYAIPAGLEG-----RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQ 289 (693)
Q Consensus 215 ~~g~~~p~~~Q~~ai~~il~g-----~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q 289 (693)
-+.|..|++-|++++..++.. ..+++.|+.|||||.. +..++..+...+. .++++++||...+..
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~~---------~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTGE---------TGIILAAPTHAAKKI 89 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTTC---------CCEEEEESSHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcCC---------ceEEEecCcHHHHHH
Confidence 457889999999999877532 3899999999999976 4566666655432 258999999888876
Q ss_pred HHHHH
Q psy1604 290 IHEVA 294 (693)
Q Consensus 290 ~~~~~ 294 (693)
+.+.+
T Consensus 90 l~~~~ 94 (459)
T 3upu_A 90 LSKLS 94 (459)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 65544
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.02 E-value=0.0029 Score=66.26 Aligned_cols=70 Identities=14% Similarity=0.042 Sum_probs=55.1
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.|+|+|+..+..+...+-+++..+-+.|||......++..+...+ +..+++++|++..|..+.+.+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~---------g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK---------DKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS---------SCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC---------CCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 789999999987655566899999999999876666665554432 3479999999999998888777664
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.55 E-value=0.014 Score=65.28 Aligned_cols=72 Identities=14% Similarity=0.019 Sum_probs=57.1
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAY 299 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 299 (693)
.|+|+|+..+..+...+.+++..+-++|||......++..+...+ +.++++++|++..+..+.+.++.+..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~---------~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK---------DKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS---------SCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC---------CCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 589999999987755677899999999999876665555555432 33799999999999999988887754
Q ss_pred C
Q psy1604 300 S 300 (693)
Q Consensus 300 ~ 300 (693)
.
T Consensus 234 ~ 234 (592)
T 3cpe_A 234 L 234 (592)
T ss_dssp T
T ss_pred h
Confidence 3
No 107
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=96.47 E-value=0.00045 Score=56.36 Aligned_cols=32 Identities=34% Similarity=0.772 Sum_probs=0.0
Q ss_pred CCCCccee-cCCCCCcccCcccccCCCCCCCCC
Q psy1604 103 SKPGDWMC-SCGASNFAKRDACFKCSEPKPEGA 134 (693)
Q Consensus 103 ~~~gdw~~-~c~~~n~~~r~~c~~c~~~~~~~~ 134 (693)
.++|||.| .|...||+++..|+.|+.+++.+.
T Consensus 4 ~~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~ 36 (92)
T 3gj8_B 4 GSVGSWECPVCCVSNKAEDSRCVSCTSEKPGLV 36 (92)
T ss_dssp ---------------------------------
T ss_pred CCCcCCCCCcCCCEeccccceecccCCCCCCCC
Confidence 36799999 699999999999999999998643
No 108
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.19 E-value=0.0038 Score=43.11 Aligned_cols=36 Identities=28% Similarity=0.668 Sum_probs=30.6
Q ss_pred CCCCCCCCccee-cCCCCCcccCcccccCCCCCCCCC
Q psy1604 99 DRGNSKPGDWMC-SCGASNFAKRDACFKCSEPKPEGA 134 (693)
Q Consensus 99 ~~~~~~~gdw~~-~c~~~n~~~r~~c~~c~~~~~~~~ 134 (693)
.|+....|.|.| .|-..|.+....|+.|..|++...
T Consensus 3 ~~~~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 3 SGSSGVIGTWDCDTCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp SSCCCCSSSEECSSSCCEECSSCSBCSSSCCBCSCSS
T ss_pred CCcCCCCCceECCeeeccCccCCceecCcCCCCCCCc
Confidence 345566799999 599999999999999999998753
No 109
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.18 E-value=0.01 Score=67.30 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=53.9
Q ss_pred CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 219 TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
..+++-|++++.. ....++|.|+.|||||.+.+--+.+.+...+ ....++|++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-------~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-------CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-------CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4789999999973 3568999999999999985444444333322 122379999999999999999988764
No 110
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.96 E-value=0.0097 Score=63.14 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=53.4
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASS 314 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~ 314 (693)
.+-.++.|+.|+|||... .+.+ .. .+.+|++||++++..|.+.+.+....
T Consensus 161 ~~v~~I~G~aGsGKTt~I----~~~~-~~-----------~~~lVlTpT~~aa~~l~~kl~~~~~~-------------- 210 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEI----LSRV-NF-----------EEDLILVPGRQAAEMIRRRANASGII-------------- 210 (446)
T ss_dssp SEEEEEEECTTSCHHHHH----HHHC-CT-----------TTCEEEESCHHHHHHHHHHHTTTSCC--------------
T ss_pred ccEEEEEcCCCCCHHHHH----HHHh-cc-----------CCeEEEeCCHHHHHHHHHHhhhcCcc--------------
Confidence 345688999999999962 2222 11 14699999999999988877432100
Q ss_pred HHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhh
Q psy1604 315 MHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRM 360 (693)
Q Consensus 315 ~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l 360 (693)
.....-|.|.+.++- +......-..++||||||-.+
T Consensus 211 --------~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 --------VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp --------CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS
T ss_pred --------ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC
Confidence 001223667766543 222222234889999999844
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.81 E-value=0.0044 Score=58.07 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=26.9
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPT 283 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Pt 283 (693)
.++-.++.+++|+|||..+ +-++.++... +.+++++.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~l-l~~~~~~~~~----------g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTEL-LSFVEIYKLG----------KKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHH-HHHHHHHHHT----------TCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHH-HHHHHHHHHC----------CCeEEEEeec
Confidence 3556789999999999974 4444444332 2368888887
No 112
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.70 E-value=0.021 Score=53.02 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.++.+++.+|+|+|||.. +..+...+
T Consensus 37 ~g~~~~l~G~~G~GKTtL-~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHL-AVATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 468899999999999985 33344444
No 113
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=95.61 E-value=0.0042 Score=50.57 Aligned_cols=30 Identities=33% Similarity=0.803 Sum_probs=25.0
Q ss_pred CCCCccee-cCCCCCcccCcccccCCCCCCC
Q psy1604 103 SKPGDWMC-SCGASNFAKRDACFKCSEPKPE 132 (693)
Q Consensus 103 ~~~gdw~~-~c~~~n~~~r~~c~~c~~~~~~ 132 (693)
.++|+|.| .|...|++.+..|+.|+.++|.
T Consensus 61 ~~~g~W~C~~C~~~N~a~~~~C~~C~~pkp~ 91 (92)
T 3gj8_B 61 KPEGSWDCEVCLVQNKADSTKCIACESAKPG 91 (92)
T ss_dssp ---CCEECTTTCCEECSSCSBCTTTCCBCC-
T ss_pred CCCCcccCCcCCcCChhhcccccccCCCCCC
Confidence 35799999 5999999999999999999885
No 114
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.55 E-value=0.027 Score=68.66 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=72.2
Q ss_pred CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 219 TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.++|+-|.++|..- +++++|.|..|||||.+.+--++..+...... ....++|++++|+..+..+.+.+....
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~-----~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENP-----IDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSC-----CCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCC-----CCccceEEEeccHHHHHHHHHHHHHHH
Confidence 36899999999764 78999999999999998655666665543211 123379999999999999998887643
Q ss_pred cCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHH
Q psy1604 299 YSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDIL 339 (693)
Q Consensus 299 ~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l 339 (693)
...... ........+++..-..+-|.|...+...+
T Consensus 82 ~~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~~ 116 (1232)
T 3u4q_A 82 EKELVQ------RPGSLHIRRQLSLLNRASISTLHSFCLQV 116 (1232)
T ss_dssp HHHHHH------STTCHHHHHHHHHTTTSEEECHHHHHHHH
T ss_pred HHHhhc------CcchHHHHHHHhccCCCeEEeHHHHHHHH
Confidence 110000 01112334444444567889988886544
No 115
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.38 E-value=0.022 Score=54.18 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=26.9
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCH
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTR 284 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr 284 (693)
|+-.++.+++|+|||.+ ++-++.++... +.+++++.|..
T Consensus 28 G~l~vitG~MgsGKTT~-lL~~a~r~~~~----------g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEE-LIRRVRRTQFA----------KQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHHT----------TCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHHC----------CCEEEEEEecc
Confidence 45567899999999987 44445554433 34689999875
No 116
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.34 E-value=0.036 Score=63.62 Aligned_cols=71 Identities=20% Similarity=0.130 Sum_probs=53.7
Q ss_pred CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 219 TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 219 ~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
..+++-|++++... ...++|.|..|||||.+...-+.+.+...+ ....++|+|+.|+..|.++.+.+.+..
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-------~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-------VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTC-------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 46899999999763 568999999999999985444444443322 122379999999999999998887764
No 117
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.31 E-value=0.022 Score=64.85 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=53.5
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA 298 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 298 (693)
.+++-|++++... +..++|.|+.|||||.+..--+.+.+...+ ....++|+|+.|+..+.++.+.+.+..
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-------~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-------CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 5789999999763 568999999999999985444544443322 112379999999999999999988764
No 118
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.31 E-value=0.018 Score=54.06 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=28.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPT 283 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Pt 283 (693)
.++-.++.+++|+|||.+ ++-++.++... +.+++++.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~-ll~~a~r~~~~----------g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEE-LIRRIRRAKIA----------KQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHH-HHHHHHHHHHT----------TCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHH-HHHHHHHHHHC----------CCEEEEEEec
Confidence 355678899999999987 45555555433 3468999887
No 119
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.74 E-value=0.088 Score=53.87 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=19.5
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
+..+++.+|+|+|||.. +-.+.+.+..
T Consensus 37 ~~~lll~G~~GtGKT~l-a~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL-LQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHH-HHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHH-HHHHHHHHHH
Confidence 46899999999999985 3344444433
No 120
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.72 E-value=0.069 Score=59.55 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=74.2
Q ss_pred CCCHHHHhhhhhhhc--CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 220 KPTPIQKYAIPAGLE--GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~--g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
.+|.-|.+++..++. ....++.|+-|.|||.+.-+.+ ..+.. +++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~~-------------~~~vtAP~~~a~~~l~~~~~~- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIAG-------------RAIVTAPAKASTDVLAQFAGE- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSSS-------------CEEEECSSCCSCHHHHHHHGG-
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHHh-------------CcEEECCCHHHHHHHHHHhhC-
Confidence 689999999988875 3457899999999997644433 33321 369999998877654433211
Q ss_pred hcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCC
Q psy1604 298 AYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHST 377 (693)
Q Consensus 298 ~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~ 377 (693)
.|-+..|..+.. ...+.++||||||=.+. .+.+..++..
T Consensus 240 ----------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~-- 278 (671)
T 2zpa_A 240 ----------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSR-- 278 (671)
T ss_dssp ----------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTT--
T ss_pred ----------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhh--
Confidence 133445655432 23468999999998653 4555666642
Q ss_pred CCCCCCcceEEeeccCc
Q psy1604 378 MPDVANRQTLMFSATFP 394 (693)
Q Consensus 378 ~~~~~~~q~lllSAT~~ 394 (693)
...++||.|..
T Consensus 279 ------~~~v~~~tTv~ 289 (671)
T 2zpa_A 279 ------FPRTLLTTTVQ 289 (671)
T ss_dssp ------SSEEEEEEEBS
T ss_pred ------CCeEEEEecCC
Confidence 23577888864
No 121
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.67 E-value=0.082 Score=50.70 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=27.6
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTR 284 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr 284 (693)
.++-.++.+++|+|||.+. +-.+.+... .+.+++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~l-L~~~~r~~~----------~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTEL-MRRVRRFQI----------AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHH-HHHHHHHHT----------TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHH-HHHHHHHHH----------CCCeEEEEeecC
Confidence 3566788999999999874 444444433 334789998864
No 122
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.67 E-value=0.14 Score=52.66 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=28.6
Q ss_pred CCHHHHhhhhhhh----cCC---CEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 221 PTPIQKYAIPAGL----EGR---DLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 221 p~~~Q~~ai~~il----~g~---~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
++|+|.+++..+. +++ .+++.+|.|+|||..+ ..+.+.+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHHhC
Confidence 5788888876654 332 4899999999999863 344455543
No 123
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.66 E-value=0.018 Score=55.54 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=51.6
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGAS 313 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~ 313 (693)
.|.-+++.+++|+|||.+ ++-++.++... +.+++++.|...- . . ...+....++ .
T Consensus 11 ~G~i~litG~mGsGKTT~-ll~~~~r~~~~----------g~kVli~~~~~d~--r-~--~~~i~srlG~---------~ 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAE-LIRRLHRLEYA----------DVKYLVFKPKIDT--R-S--IRNIQSRTGT---------S 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHH-HHHHHHHHHHT----------TCCEEEEEECCCG--G-G--CSSCCCCCCC---------S
T ss_pred CcEEEEEECCCCCcHHHH-HHHHHHHHHhc----------CCEEEEEEeccCc--h-H--HHHHHHhcCC---------C
Confidence 455678899999999987 44455555433 2368888775421 0 0 0011111110 0
Q ss_pred hHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhh
Q psy1604 314 SMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRM 360 (693)
Q Consensus 314 ~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l 360 (693)
...+.+.+...+++.+.... .-.++++|||||++.+
T Consensus 66 ----------~~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 66 ----------LPSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp ----------SCCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred ----------ccccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 01233556666766665422 2345899999999975
No 124
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=94.63 E-value=0.014 Score=37.27 Aligned_cols=30 Identities=33% Similarity=0.796 Sum_probs=23.9
Q ss_pred CCCCcceec-CCCCCcccCcccccCCCCCCC
Q psy1604 103 SKPGDWMCS-CGASNFAKRDACFKCSEPKPE 132 (693)
Q Consensus 103 ~~~gdw~~~-c~~~n~~~r~~c~~c~~~~~~ 132 (693)
.++|.|.|+ |-..|.+....|-.|..++|.
T Consensus 3 ~~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 3 LGSGSWDCEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp ---CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCCCceECCeeEeECccccCEEcccCCcCCC
Confidence 357999995 999999999999999999874
No 125
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.57 E-value=0.1 Score=48.76 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=27.2
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPT 283 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Pt 283 (693)
.++=.++.+++|||||.. ++-.+.+....+ .+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~~----------~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQIAQ----------YKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHHTT----------CCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHHcC----------CeEEEEccc
Confidence 356678999999999976 444455444332 368999886
No 126
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.40 E-value=0.019 Score=51.59 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.++.+++.+++|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999984
No 127
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.30 E-value=0.056 Score=37.38 Aligned_cols=31 Identities=32% Similarity=0.759 Sum_probs=27.8
Q ss_pred CCCccee-cCCCCCcccCcccccCCCCCCCCC
Q psy1604 104 KPGDWMC-SCGASNFAKRDACFKCSEPKPEGA 134 (693)
Q Consensus 104 ~~gdw~~-~c~~~n~~~r~~c~~c~~~~~~~~ 134 (693)
..|.|.| .|-..|.+....|+.|..|++...
T Consensus 8 ~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 8 PEGSWDCELCLVQNKADSTKCLACESAKPGTK 39 (47)
T ss_dssp CCSSCCCSSSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred CCCeeECCeeecCCcCCcceecCcCCCCCCCc
Confidence 4589999 599999999999999999999764
No 128
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.058 Score=54.89 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=21.5
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
.+.++++.+|+|+|||.+ +-.+++.+..
T Consensus 44 ~~~~lli~GpPGTGKT~~-v~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQL-VNDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHH-HHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 346899999999999987 4556666654
No 129
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.03 E-value=0.35 Score=47.91 Aligned_cols=17 Identities=29% Similarity=0.161 Sum_probs=15.0
Q ss_pred CCEEEEccCCCChhHHH
Q psy1604 236 RDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ 252 (693)
..+++.+|+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999863
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.72 E-value=0.27 Score=51.22 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=18.8
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
....+++.+|+|+|||.. +-.+.+.+
T Consensus 43 ~~~~vll~G~~G~GKT~l-~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV-ARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHH-HHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHH-HHHHHHHH
Confidence 456899999999999986 33344443
No 131
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=93.64 E-value=0.032 Score=35.45 Aligned_cols=29 Identities=34% Similarity=0.862 Sum_probs=24.6
Q ss_pred CCCcceec-CCCCCcccCcccccCCCCCCC
Q psy1604 104 KPGDWMCS-CGASNFAKRDACFKCSEPKPE 132 (693)
Q Consensus 104 ~~gdw~~~-c~~~n~~~r~~c~~c~~~~~~ 132 (693)
.+|.|.|+ |-..|.+....|-.|..++|.
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg 33 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPKPG 33 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCceeCCcccCCCccccCEEcccCCCCCC
Confidence 56899995 999999999999999999873
No 132
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.41 E-value=0.062 Score=50.96 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=27.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTR 284 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr 284 (693)
.|.-.++.+++|+|||.. ++-.+.++... +.+++++.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~-Llr~~~r~~~~----------g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEE-LIRRLRRGIYA----------KQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHHT----------TCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHH-HHHHHHHHHHc----------CCceEEEEecc
Confidence 355678899999999986 44445555443 23689998864
No 133
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.22 E-value=0.18 Score=53.97 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=18.7
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
...+++.+|+|+|||.. +-.+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtL-a~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL-LQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 46899999999999985 333444443
No 134
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.03 E-value=0.22 Score=46.73 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=18.8
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
+.+++.+++|+|||.. +..+...+.
T Consensus 55 ~~~~l~G~~GtGKT~l-a~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL-LAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHH-HHHHHHHHH
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 6899999999999985 334444443
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.99 E-value=0.058 Score=53.99 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=29.7
Q ss_pred CccccCCCCHHHHHHHHhCC---CCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 198 ESFESAGLREILVKNLKKSN---YTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g---~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
.+|+++.-.+..++.|...- ...+..++.. .+...+.+++.+|+|+|||..
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKV---GIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHH---CCCCCSEEEEESSSSSSHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc---CCCCCCeEEEECCCCCcHHHH
Confidence 45777766666666665421 0011111111 123457899999999999985
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.90 E-value=0.27 Score=51.27 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=18.2
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.+.+++.+|+|+|||..+ ..+.+.+
T Consensus 45 ~~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 357999999999999863 3444444
No 137
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.70 E-value=0.65 Score=43.66 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.2
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
.++++.+|+|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3699999999999985
No 138
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.67 E-value=0.86 Score=41.64 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=19.4
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
.+.+++.+++|+|||.. +..+.+.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l-~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI-VEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHH-HHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHH-HHHHHHHHHh
Confidence 46799999999999986 3344444433
No 139
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.54 E-value=0.2 Score=35.74 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=27.1
Q ss_pred CCCCcceec-CCCCCcccCcccccCCCCCCCC
Q psy1604 103 SKPGDWMCS-CGASNFAKRDACFKCSEPKPEG 133 (693)
Q Consensus 103 ~~~gdw~~~-c~~~n~~~r~~c~~c~~~~~~~ 133 (693)
..++.|.|+ |...|......|-.|..+++..
T Consensus 7 ~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s 38 (53)
T 2d9g_A 7 GDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTS 38 (53)
T ss_dssp SCCCCEECSSSCCEECSSCSSCSSSCCCCCCC
T ss_pred CCCCCcCCCCCccCCCCCCCccCCCCCcCCcc
Confidence 345789995 9999999999999999999864
No 140
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.47 E-value=0.83 Score=41.60 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=18.8
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
..++++.+|+|+|||..+ ..+.+.+.
T Consensus 43 ~~~vll~G~~G~GKT~la-~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV-EGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHH-HHHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHHH
Confidence 467999999999999863 33444443
No 141
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.16 E-value=0.2 Score=48.30 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=19.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.++.+++.+|+|+|||..+ ..+.+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la-~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI-HAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 4678999999999999853 3344444
No 142
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.95 E-value=0.32 Score=55.79 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=63.9
Q ss_pred CCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-ccccCCCCCCCEEE
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-ASRGLDIKGIRHVI 591 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-~~~GiDip~v~~VI 591 (693)
.+.+++|.++++.-+...++.+++ .++.+..+||+++..+|...++.+.+|..+|+|+|.. +...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 357899999999988887776654 4789999999999999999999999999999999964 44567888888877
Q ss_pred E
Q psy1604 592 N 592 (693)
Q Consensus 592 ~ 592 (693)
.
T Consensus 496 I 496 (780)
T 1gm5_A 496 I 496 (780)
T ss_dssp E
T ss_pred e
Confidence 4
No 143
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.51 E-value=0.57 Score=49.63 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=28.6
Q ss_pred CceeEEEEccchhhh---hCCchHHHHHHhccCCCCCCCCcceEEeeccCchhH
Q psy1604 347 ASVRFVVLDEADRML---DMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETI 397 (693)
Q Consensus 347 ~~~~~lVlDEah~l~---~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~ 397 (693)
.++++||||++-++. +..+...+..+..... +..-++.++|+.....
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~----pd~vlLVlDa~~gq~a 227 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK----PDDVILVIDASIGQKA 227 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC----CSEEEEEEEGGGGGGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC----CcceEEEEeCccchHH
Confidence 578999999998653 3334455555544321 2455677888754443
No 144
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.11 E-value=0.85 Score=46.27 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=17.8
Q ss_pred CceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 347 ASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
.+..+|||||+|.+........+..++.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le 131 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFME 131 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHH
Confidence 3678999999999862223334444443
No 145
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.08 E-value=0.93 Score=42.26 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=33.7
Q ss_pred CceeEEEEccchhhhhCCc--hHHHHHHhccCCCCCCCCcceEEeeccCchhHHhhhhhh
Q psy1604 347 ASVRFVVLDEADRMLDMGF--LGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNI 404 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~~~~--~~~i~~i~~~~~~~~~~~~q~lllSAT~~~~~~~~~~~~ 404 (693)
.++++||+||+-..+..++ ...+..++.... ....+|+.+--.|+++...+...
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp----~~~~vIlTGr~ap~~l~e~AD~V 174 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARP----GHQTVIITGRGCHRDILDLADTV 174 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC----TTCEEEEECSSCCHHHHHHCSEE
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc----CCCEEEEECCCCcHHHHHhCcce
Confidence 6789999999977655543 333444444321 34566766666777776665443
No 146
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.00 E-value=0.88 Score=46.32 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=29.1
Q ss_pred CccccCCCCHHHHHHHHhCC---CCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 198 ESFESAGLREILVKNLKKSN---YTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g---~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
.+|+++.-.+.+.+.|++.- ...|..++ ......+.+++.+|+|+|||..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC----TTCCCCSEEEEESSSSSCHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh----CCCCCCceEEEECCCCccHHHH
Confidence 46778766666666665420 00110000 0112236899999999999985
No 147
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.92 E-value=1.4 Score=42.91 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
..+.+++.+|+|+|||..
T Consensus 38 ~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCCEEEEESCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 346799999999999985
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.78 E-value=0.64 Score=48.39 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=17.1
Q ss_pred CEEEEccCCCChhHHHHHHHHHHh
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.+++.+|+|+|||... -.+...+
T Consensus 46 ~~li~G~~G~GKTtl~-~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL-RKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHH
Confidence 7999999999999863 3344443
No 149
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.58 E-value=0.29 Score=49.92 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=29.5
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHh-hhh-hhhcCCCEEEEccCCCChhHH
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKY-AIP-AGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~-ai~-~il~g~~vlv~a~TGsGKTl~ 251 (693)
.+|+++.-.+.+.+.|...-. .|.+.. .+. .....+.+++.+|+|+|||..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 457777667777777764211 011100 000 111235799999999999986
No 150
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.25 E-value=0.91 Score=47.01 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=18.4
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
++.+++.+++|+|||.. +-.+...+
T Consensus 45 ~~~vli~G~~G~GKTtl-~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV-VKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHH
Confidence 56899999999999985 33344444
No 151
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.23 E-value=0.41 Score=34.46 Aligned_cols=31 Identities=35% Similarity=0.820 Sum_probs=26.9
Q ss_pred CCCCCccee-cCCCCCcccCcccccCCCCCCC
Q psy1604 102 NSKPGDWMC-SCGASNFAKRDACFKCSEPKPE 132 (693)
Q Consensus 102 ~~~~gdw~~-~c~~~n~~~r~~c~~c~~~~~~ 132 (693)
....|.|.| .|-..|.+....|.-|..|+|.
T Consensus 26 K~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 26 KRPIGSWECSVCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp CCCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred CCCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence 345699999 5999999999999999999873
No 152
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.20 E-value=2.5 Score=43.04 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
.++++.+|+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5899999999999985
No 153
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.92 E-value=1.1 Score=45.33 Aligned_cols=28 Identities=14% Similarity=0.421 Sum_probs=18.6
Q ss_pred CCceeEEEEccchhhhhCCchHHHHHHhc
Q psy1604 346 LASVRFVVLDEADRMLDMGFLGDIQHVMQ 374 (693)
Q Consensus 346 l~~~~~lVlDEah~l~~~~~~~~i~~i~~ 374 (693)
....+++||||||+|.... ...+.+.+.
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LE 107 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALE 107 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHH
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHh
Confidence 3467899999999985433 333444554
No 154
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.72 E-value=1.9 Score=44.21 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=24.4
Q ss_pred CceeEEEEccchhhhhCCchHHHHHHhccCCCCCCCCcceEEeecc
Q psy1604 347 ASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSAT 392 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~~~~~q~lllSAT 392 (693)
.+.+++|+||+|.| +......+..++.... .+..+++.|..
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~----~~~~~Il~t~~ 173 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYS----KNIRLIMVCDS 173 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHST----TTEEEEEEESC
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhc----CCCEEEEEeCC
Confidence 46789999999984 4444555666665421 23445555544
No 155
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=89.28 E-value=0.81 Score=48.26 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=63.0
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhh---CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCccc----ccCCCCCCC
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCE---TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVAS----RGLDIKGIR 588 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~---~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~----~GiDip~v~ 588 (693)
....++||.++++.-+..+++.++. .++.+..+||+.+..++...++.+..+..+|+|+|.-.- .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 4567899999999999999999888 578999999999999998889999999999999995321 114555677
Q ss_pred EEEE
Q psy1604 589 HVIN 592 (693)
Q Consensus 589 ~VI~ 592 (693)
+||.
T Consensus 142 ~iVi 145 (414)
T 3oiy_A 142 FVFV 145 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 156
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.89 E-value=1.3 Score=47.23 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=30.0
Q ss_pred CCccccCCCCHHHHHHHHhCCC---CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 197 IESFESAGLREILVKNLKKSNY---TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g~---~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
..+|+++.-.+.+.+.|...-. ..|.-++ ......+.+++.+|+|+|||+.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHH
Confidence 3567787666667776654210 0111111 0112347899999999999985
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.08 E-value=2.1 Score=43.15 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=13.9
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
++++.+|+|+|||..
T Consensus 48 ~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTA 62 (327)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 699999999999986
No 158
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=87.91 E-value=1.9 Score=38.77 Aligned_cols=72 Identities=19% Similarity=0.108 Sum_probs=52.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCceeE
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASVRF 351 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 351 (693)
++||.++++..+..+.+.+... ++.+..++|+.+.......+ ....+|+|+|. .+ ...+++.++++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gld~~~~~~ 106 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-VA-----ARGIDIENISL 106 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-GG-----TTTCCCSCCSE
T ss_pred cEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-hh-----hcCCchhcCCE
Confidence 6899999999999999888775 46788889988766544433 23578999993 22 22467788888
Q ss_pred EEEccc
Q psy1604 352 VVLDEA 357 (693)
Q Consensus 352 lVlDEa 357 (693)
||.-..
T Consensus 107 Vi~~~~ 112 (163)
T 2hjv_A 107 VINYDL 112 (163)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 887443
No 159
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.82 E-value=1.1 Score=43.19 Aligned_cols=53 Identities=19% Similarity=0.118 Sum_probs=31.8
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
..|.-+++.+++|+|||..++..+. .+...+ .+++++.-. ....++.+.+.++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~-~~~~~~----------~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLW-NGLKMG----------EPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHH-HHHHTT----------CCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH-HHHhcC----------CeEEEEEcc-CCHHHHHHHHHHc
Confidence 3567889999999999986433333 333222 246776543 3345565555543
No 160
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=87.72 E-value=3.6 Score=43.56 Aligned_cols=199 Identities=29% Similarity=0.362 Sum_probs=116.1
Q ss_pred hhhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhhhcceEEEE
Q psy1604 403 NILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIA 482 (693)
Q Consensus 403 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~ 482 (693)
.+++.+|+++...+....+.+..+.++++||.|.++++++...+..+...... ....+.+.+++|++..+.....
T Consensus 181 ~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~--~~~~q~l~~SAT~~~~~~~~~~--- 255 (434)
T 2db3_A 181 HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM--RPEHQTLMFSATFPEEIQRMAG--- 255 (434)
T ss_dssp SEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS--CSSCEEEEEESCCCHHHHHHHH---
T ss_pred CEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC--CCCceEEEEeccCCHHHHHHHH---
Confidence 34556677777777777778888999999999999999887777776654322 3567889999999876542110
Q ss_pred eecccccccceeEEEEEccchhHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHH
Q psy1604 483 VGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIH 562 (693)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~ 562 (693)
....+.. ......... ....-...++.+........+.+.|...+..+.++... ...-+.+.+
T Consensus 256 -----~~l~~~~--~i~~~~~~~--------~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lVF~~t--~~~a~~l~~ 318 (434)
T 2db3_A 256 -----EFLKNYV--FVAIGIVGG--------ACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVET--KRGADFLAS 318 (434)
T ss_dssp -----TTCSSCE--EEEESSTTC--------CCTTEEEEEEECCGGGHHHHHHHHHHHCCTTEEEECSS--HHHHHHHHH
T ss_pred -----HhccCCE--EEEeccccc--------cccccceEEEEeCcHHHHHHHHHHHHhCCCCEEEEEeC--cHHHHHHHH
Confidence 0000111 111110000 00111234666777777788888888776666666543 444445555
Q ss_pred HHhcCCCcEEEEeCcccc--------cCCCCCCCEEEE-------cCCCC--------ChhhhhhhhcccccCCCcceEE
Q psy1604 563 DFKTKKMKVLVATAVASR--------GLDIKGIRHVIN-------YDLPQ--------EIDEYVHRIGRTGRVGNKGRAT 619 (693)
Q Consensus 563 ~F~~g~~~ILVaT~v~~~--------GiDip~v~~VI~-------~d~p~--------s~~~y~Qr~GRagR~G~~G~~~ 619 (693)
.++....++..-+.-... -..-....++|- +|+|. -+.+...-+=|+||.|+.|..-
T Consensus 319 ~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G 398 (434)
T 2db3_A 319 FLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNG 398 (434)
T ss_dssp HHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCE
T ss_pred HHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCC
Confidence 565555555444321110 000113455664 33442 3455667778888888888766
Q ss_pred EEeC
Q psy1604 620 SFYD 623 (693)
Q Consensus 620 ~~~~ 623 (693)
..+.
T Consensus 399 ~a~~ 402 (434)
T 2db3_A 399 RATS 402 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6655
No 161
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=86.69 E-value=3.3 Score=37.60 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=52.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHh----cCCcEEEechhhHHHHHhcCCcCCCcee
Q psy1604 275 PEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLE----KGCNILVATMGRLKDILDRGRISLASVR 350 (693)
Q Consensus 275 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~----~~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 350 (693)
.++||.++++..+..+.+.+.+. ++.+..++|+.+.......+. ...+|+|+|.- + ...+++..++
T Consensus 35 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-~-----~~Gid~~~~~ 104 (175)
T 2rb4_A 35 GQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-C-----ARGIDVKQVT 104 (175)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-C-----CTTTCCTTEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-h-----hcCCCcccCC
Confidence 47999999999999988888764 467888899887665544432 36799999941 1 2346788899
Q ss_pred EEEE
Q psy1604 351 FVVL 354 (693)
Q Consensus 351 ~lVl 354 (693)
+||.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 162
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=86.69 E-value=4.8 Score=37.23 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=52.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCceeE
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASVRF 351 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 351 (693)
++||.++++.-+..+.+.+.+. ++.+..++|+.+.......+ ....+|+|+|. .+.. .+++.++++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~-Gldi~~v~~ 125 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK-GLDFPAIQH 125 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT-TCCCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc-CCCcccCCE
Confidence 6999999999999999988775 46788889988766544433 23689999993 2233 457788888
Q ss_pred EEEcc
Q psy1604 352 VVLDE 356 (693)
Q Consensus 352 lVlDE 356 (693)
||.=+
T Consensus 126 VI~~d 130 (191)
T 2p6n_A 126 VINYD 130 (191)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88733
No 163
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.37 E-value=3.7 Score=38.80 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=17.7
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
+.+++.+++|+|||.. +..+.+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l-~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSI-ARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHH-HHHHHHHHH
T ss_pred eEEEEECCCCCCHHHH-HHHHHHHhc
Confidence 3689999999999985 333444443
No 164
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.72 E-value=1.3 Score=45.37 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=14.2
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
.++++.+|+|+|||..
T Consensus 59 ~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTST 74 (353)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4599999999999985
No 165
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.62 E-value=2.1 Score=43.52 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=32.3
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHH-HHHHHHHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTREL-VMQIHEVACKY 297 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~L-a~Q~~~~~~~~ 297 (693)
.|.-+++.+++|+|||..++..+.+ +...... + ..+.+++++.-...+ ..++.+.+.++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~-~~~~~~~---g-g~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVN-VQLPPEK---G-GLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-TTSCGGG---T-CCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHH-Hhccccc---C-CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4577899999999999864433332 2211000 0 113467887654332 44555555544
No 166
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=85.13 E-value=3.5 Score=36.98 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=52.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCcee
Q psy1604 275 PEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASVR 350 (693)
Q Consensus 275 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 350 (693)
.++||.++++..+..+.+.+.+. ++.+..++|+.+.......+ ....+|+|+|. .+ ...+++.+++
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~G~d~~~~~ 100 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-LL-----ARGIDVQQVS 100 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-GG-----TTTCCCCSCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-hh-----hcCCCcccCC
Confidence 36999999999999998888774 46788889888766544433 23678999993 22 2245677888
Q ss_pred EEEEcc
Q psy1604 351 FVVLDE 356 (693)
Q Consensus 351 ~lVlDE 356 (693)
+||.-+
T Consensus 101 ~Vi~~~ 106 (165)
T 1fuk_A 101 LVINYD 106 (165)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 887643
No 167
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=84.61 E-value=0.56 Score=49.17 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=29.0
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHH-Hhhhhhh-hcCCCEEEEccCCCChhHHH
Q psy1604 197 IESFESAGLREILVKNLKKSNYTKPTPIQ-KYAIPAG-LEGRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q-~~ai~~i-l~g~~vlv~a~TGsGKTl~~ 252 (693)
..+|+++.=...+.+.|...-.. +.. .+.+..+ ...+++++.+|+|+|||..+
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVIL---PSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHH---HHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHH---hccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 34577775566666666532100 000 0000011 23578999999999999863
No 168
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=84.31 E-value=3 Score=44.88 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=53.8
Q ss_pred HHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcccccCCCC
Q psy1604 506 KKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIK 585 (693)
Q Consensus 506 ~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~~~GiDip 585 (693)
...|...++. .+.++|+.+.+...++.|.+.|.+.++.+...... ..+..| .|.|+..-+..|.-+|
T Consensus 371 ~~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~----------~~~~~g--~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASDR--GRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG----------GGCCTT--CEEEEESCCCSCEEET
T ss_pred HHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch----------hhcCCC--cEEEEEcccccCcccC
Confidence 3555555543 24689999999999999999999988776544321 112333 5677778899999999
Q ss_pred CCCEEEEcC
Q psy1604 586 GIRHVINYD 594 (693)
Q Consensus 586 ~v~~VI~~d 594 (693)
+..++|..+
T Consensus 438 ~~klaVITE 446 (483)
T 3hjh_A 438 VRNLALICE 446 (483)
T ss_dssp TTTEEEEEH
T ss_pred CCCEEEEEc
Confidence 888877643
No 169
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=84.23 E-value=2.8 Score=38.01 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=52.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHh----cCCcEEEechhhHHHHHhcCCcCCCcee
Q psy1604 275 PEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLE----KGCNILVATMGRLKDILDRGRISLASVR 350 (693)
Q Consensus 275 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~----~~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 350 (693)
.++||.++++..+..+.+.+... ++.+..++|+.+.......+. ...+|+|+|. .+ ...+++.+++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~~~ 101 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-LF-----GRGMDIERVN 101 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-CC-----STTCCGGGCS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-ch-----hcCcchhhCC
Confidence 36999999999999998888775 467888898887665444332 3678999994 22 2245677888
Q ss_pred EEEEcc
Q psy1604 351 FVVLDE 356 (693)
Q Consensus 351 ~lVlDE 356 (693)
+||.-+
T Consensus 102 ~Vi~~d 107 (172)
T 1t5i_A 102 IAFNYD 107 (172)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 887644
No 170
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.12 E-value=1.4 Score=46.98 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=14.4
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
.++++.+|+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 4799999999999985
No 171
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=84.12 E-value=0.42 Score=39.02 Aligned_cols=31 Identities=32% Similarity=0.805 Sum_probs=24.7
Q ss_pred CCCCCccee-cCCCCCcccCcccccCCCCCCC
Q psy1604 102 NSKPGDWMC-SCGASNFAKRDACFKCSEPKPE 132 (693)
Q Consensus 102 ~~~~gdw~~-~c~~~n~~~r~~c~~c~~~~~~ 132 (693)
...+|.|.| .|-..|.+....|..|..++|.
T Consensus 67 k~~~g~W~C~~C~~~N~~~~~~C~aC~tpkPg 98 (98)
T 3gj7_B 67 KPAIGTWDCDTCLVQNKPEAVKCVACETPKPG 98 (98)
T ss_dssp ----CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCCCcccCCcCcCCChhhcceecccCCCCCC
Confidence 345699999 5999999999999999999873
No 172
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=83.91 E-value=0.78 Score=28.58 Aligned_cols=25 Identities=32% Similarity=0.745 Sum_probs=22.5
Q ss_pred Cccee-cCCCCCcccCcccccCCCCC
Q psy1604 106 GDWMC-SCGASNFAKRDACFKCSEPK 130 (693)
Q Consensus 106 gdw~~-~c~~~n~~~r~~c~~c~~~~ 130 (693)
..|.| .|...|......|..|+.++
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 48999 59999999999999999876
No 173
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=83.55 E-value=0.8 Score=41.91 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=41.7
Q ss_pred CHHHHhhhhhhhcC--CCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHH
Q psy1604 222 TPIQKYAIPAGLEG--RDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQI 290 (693)
Q Consensus 222 ~~~Q~~ai~~il~g--~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~ 290 (693)
.+-|..++..++.. +-.++.+.-|++||...+..++..... .+.+|.+|+|+..-....
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~----------~Gr~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE----------QGREVQIIAADRRSQMNM 96 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH----------TTCCEEEECSTTHHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh----------cCeEEEEEcCchHHHHHH
Confidence 35688888888743 456778999999998855555544433 345799999997665543
No 174
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=83.26 E-value=3.1 Score=49.83 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=63.7
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhh---CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-----ccccCCCCCC
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCE---TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-----ASRGLDIKGI 587 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~---~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-----~~~GiDip~v 587 (693)
..+.++||.++++.-+..+++.|++ .++.+..+||+++..+|...++.+..|..+|+|+|.- +.. +++.++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCc
Confidence 4567899999999999999999988 5678999999999988888899999999999999952 222 456678
Q ss_pred CEEEE
Q psy1604 588 RHVIN 592 (693)
Q Consensus 588 ~~VI~ 592 (693)
++||.
T Consensus 198 ~~lVi 202 (1104)
T 4ddu_A 198 DFVFV 202 (1104)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88775
No 175
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=82.80 E-value=1.5 Score=31.01 Aligned_cols=28 Identities=32% Similarity=0.791 Sum_probs=24.9
Q ss_pred Cccee-cCCCCCcccCcccccCCCCCCCC
Q psy1604 106 GDWMC-SCGASNFAKRDACFKCSEPKPEG 133 (693)
Q Consensus 106 gdw~~-~c~~~n~~~r~~c~~c~~~~~~~ 133 (693)
..|.| .|...|-.....|-.|+.+++..
T Consensus 9 ~~W~Cp~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 9 VGWQCPGCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence 48999 59999999999999999998753
No 176
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=82.74 E-value=2.8 Score=50.41 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=63.8
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC-cccccCCCCCCCEE
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA-VASRGLDIKGIRHV 590 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~~~GiDip~v~~V 590 (693)
..+.+++|.++++.-+...++.+++ .++.+..+++..+..++...++.+..|..+|+|+|. .+...+.+.++.+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 3456899999999988888777754 367889999999999999999999999999999994 45556788888887
Q ss_pred EE
Q psy1604 591 IN 592 (693)
Q Consensus 591 I~ 592 (693)
|.
T Consensus 730 Ii 731 (1151)
T 2eyq_A 730 IV 731 (1151)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 177
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=82.50 E-value=3.2 Score=44.31 Aligned_cols=27 Identities=22% Similarity=0.048 Sum_probs=19.4
Q ss_pred hhcCCCEEEEccCCCChhHHHHHHHHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAFLIPIMH 258 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ll~il~ 258 (693)
+..|.-+++.|++|+|||..++..+.+
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345677899999999999864443333
No 178
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=82.28 E-value=4.7 Score=37.02 Aligned_cols=71 Identities=15% Similarity=0.103 Sum_probs=43.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCcee
Q psy1604 275 PEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASVR 350 (693)
Q Consensus 275 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 350 (693)
.++||.++++.-+..+.+.+... ++.+..++|+.+.......+ ....+|+|+|. .+. ..+++.+++
T Consensus 47 ~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~-----~Gldi~~~~ 116 (185)
T 2jgn_A 47 SLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VAA-----RGLDISNVK 116 (185)
T ss_dssp SCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSBS
T ss_pred CeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hhh-----cCCCcccCC
Confidence 47999999999999988888774 46788888877654433332 24678999993 222 235677888
Q ss_pred EEEEc
Q psy1604 351 FVVLD 355 (693)
Q Consensus 351 ~lVlD 355 (693)
+||.=
T Consensus 117 ~VI~~ 121 (185)
T 2jgn_A 117 HVINF 121 (185)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88763
No 179
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=82.20 E-value=6.1 Score=37.07 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=53.4
Q ss_pred CCcEEEEecChHhHHHHHHHHhhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-c-----cccCCCCC
Q psy1604 518 EDGVIVFVSTIRNADFIACYLCET-----EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-A-----SRGLDIKG 586 (693)
Q Consensus 518 ~~kvLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-~-----~~GiDip~ 586 (693)
..++||.++++..+..+++.++.. +..+..++|+.+..++... +..+..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999888877654 6788999999887665443 34567799999952 1 23466777
Q ss_pred CCEEEE
Q psy1604 587 IRHVIN 592 (693)
Q Consensus 587 v~~VI~ 592 (693)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 180
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=82.02 E-value=2.2 Score=46.86 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.+..+++.+|+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567899999999999984
No 181
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=82.02 E-value=1.6 Score=44.10 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
...+++.+|+|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36899999999999985
No 182
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=81.41 E-value=5.2 Score=37.63 Aligned_cols=69 Identities=19% Similarity=0.147 Sum_probs=51.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHh----cCCcEEEechhhHHHHHhcCCcCCCceeE
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLE----KGCNILVATMGRLKDILDRGRISLASVRF 351 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~----~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 351 (693)
++||.++++.-+..+.+.+.+. ++.+..++|+.+...+...+. ...+|+|+|. .+ ...+++.++++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v~~ 102 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQVDL 102 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCCBSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCccCcE
Confidence 6999999999999999888775 467888999988766554442 3578999993 12 23467788888
Q ss_pred EEE
Q psy1604 352 VVL 354 (693)
Q Consensus 352 lVl 354 (693)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 183
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.39 E-value=1.5 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=17.3
Q ss_pred CCCEEE--EccCCCChhHHHHHHHHHHh
Q psy1604 235 GRDLMG--CAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 235 g~~vlv--~a~TGsGKTl~~ll~il~~l 260 (693)
...+++ .++.|+|||.. +..+.+.+
T Consensus 50 ~~~~li~i~G~~G~GKT~L-~~~~~~~~ 76 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTL-AKFTVKRV 76 (412)
T ss_dssp CEEEEEECTTCCSSSHHHH-HHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHH-HHHHHHHH
Confidence 346788 89999999986 33344443
No 184
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.20 E-value=1.1 Score=39.41 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=17.0
Q ss_pred hhcCCCEEEEccCCCChhHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~ 251 (693)
.....++++.+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34567999999999999985
No 185
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.19 E-value=2.8 Score=42.07 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=13.7
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
++++.+|.|+|||..
T Consensus 44 ~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 44 HMIISGMPGIGKTTS 58 (323)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 499999999999986
No 186
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=81.09 E-value=25 Score=35.33 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=17.0
Q ss_pred CCEEEEccCCCChhHHHHHHHHHH
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHH 259 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~ 259 (693)
..++|.++.|+|||.. +..+.+.
T Consensus 31 ~~v~i~G~~G~GKT~L-~~~~~~~ 53 (357)
T 2fna_A 31 PITLVLGLRRTGKSSI-IKIGINE 53 (357)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHH-HHHHHHh
Confidence 5789999999999985 3334443
No 187
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=80.88 E-value=3.6 Score=43.57 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=17.3
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
.-+++++++|+|||... .-+...+.
T Consensus 101 ~vIlivG~~G~GKTTt~-~kLA~~l~ 125 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTV-AKLARYFQ 125 (443)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred eEEEEECcCCCCHHHHH-HHHHHHHH
Confidence 45788999999999863 33334443
No 188
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=80.83 E-value=1.2 Score=39.14 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=16.8
Q ss_pred hcCCCEEEEccCCCChhHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~ 251 (693)
..+.++++.+++|+|||..
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4667999999999999985
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=80.42 E-value=4.2 Score=41.59 Aligned_cols=59 Identities=12% Similarity=0.118 Sum_probs=31.8
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHH-HHHHHHHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTREL-VMQIHEVACKY 297 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~L-a~Q~~~~~~~~ 297 (693)
.|.-+++.+++|+|||..++..+.+..+..... ..+.+++++.-...+ ..++...+.++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----YPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----BCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----CCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 356789999999999986443333222211000 123467888654421 34444444443
No 190
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=80.34 E-value=7 Score=37.18 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=17.7
Q ss_pred hcCCCEEEEccCCCChhHHHHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll 254 (693)
..|.-+++.+++|+|||..+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHH
Confidence 3567899999999999986433
No 191
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=80.01 E-value=8.4 Score=37.15 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=53.4
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-----cc--ccCCC
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCET----EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-----AS--RGLDI 584 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-----~~--~GiDi 584 (693)
....++||.++++..+..+++.++.. ++.+..++|+.+...+...+ ....+|+|+|.- +. ..+++
T Consensus 109 ~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCc
Confidence 34567999999999998888776553 78889999998766554433 246789999942 11 35677
Q ss_pred CCCCEEEE
Q psy1604 585 KGIRHVIN 592 (693)
Q Consensus 585 p~v~~VI~ 592 (693)
..+++||.
T Consensus 185 ~~~~~lVi 192 (249)
T 3ber_A 185 RALKYLVM 192 (249)
T ss_dssp TTCCEEEE
T ss_pred cccCEEEE
Confidence 88888775
No 192
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=79.88 E-value=3.6 Score=44.90 Aligned_cols=59 Identities=12% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC
Q psy1604 518 EDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA 576 (693)
Q Consensus 518 ~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~ 576 (693)
.+.+||.++++.-+....+.|...++.+..+|++.+..++..++..+..+..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46799999999999999999999999999999999999999999999999999999995
No 193
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=79.64 E-value=11 Score=38.66 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=16.7
Q ss_pred CEEEEccCCCChhHHHHHHHHHHh
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.+++.+|.|+|||..+ ..+.+.+
T Consensus 40 ~~ll~G~~G~GKT~la-~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA-RLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 4799999999999863 3344444
No 194
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.58 E-value=1.4 Score=46.57 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=38.6
Q ss_pred CCCCccccCCCCHHHHHHHHhC---CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 195 RPIESFESAGLREILVKNLKKS---NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 195 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
.|-.+|++.+-.+...+.|++. -+.+|--++...++ ..+.+|+.+|+|+|||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 4567899998888888887653 23345555554443 247899999999999986
No 195
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=78.84 E-value=1.2 Score=28.46 Aligned_cols=26 Identities=27% Similarity=0.731 Sum_probs=23.5
Q ss_pred Cccee-cCCCCCcccCcccccCCCCCC
Q psy1604 106 GDWMC-SCGASNFAKRDACFKCSEPKP 131 (693)
Q Consensus 106 gdw~~-~c~~~n~~~r~~c~~c~~~~~ 131 (693)
..|.| .|...|......|-.|+.+++
T Consensus 7 ~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 7 AQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 58999 599999999999999999876
No 196
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=78.81 E-value=3.3 Score=41.88 Aligned_cols=64 Identities=13% Similarity=-0.041 Sum_probs=33.1
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCC-CcccCCCCC----CeEEEEcCCHHH-HHHHHHHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPG-ELVTGYCAQ----PEVIICAPTREL-VMQIHEVACKY 297 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~-~~~~~~~~~----~~vLil~Ptr~L-a~Q~~~~~~~~ 297 (693)
.|.-+++.+++|+|||..++-.+.+..+.... ....+...+ .+++++.-...+ ..++.+.+.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 34678999999999998644433332221100 000000011 468888655433 45555555554
No 197
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=78.71 E-value=1.1 Score=30.41 Aligned_cols=26 Identities=27% Similarity=0.648 Sum_probs=23.1
Q ss_pred Cccee-cCCCCCcccCcccccCCCCCC
Q psy1604 106 GDWMC-SCGASNFAKRDACFKCSEPKP 131 (693)
Q Consensus 106 gdw~~-~c~~~n~~~r~~c~~c~~~~~ 131 (693)
..|.| +|...|..-..-|++|-+-+.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk 38 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWALRE 38 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCCCCS
T ss_pred ceEecccccccCCCccchhhHHHhhcc
Confidence 68999 699999999999999988654
No 198
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=78.52 E-value=1.6 Score=44.92 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=18.4
Q ss_pred hcCCCEEEEccCCCChhHHHHHHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPI 256 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~i 256 (693)
..|+-+++.+++|+|||..++..+
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999998644433
No 199
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=77.74 E-value=3.4 Score=45.81 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=54.0
Q ss_pred CCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHH--hcCCCcEEEEeC
Q psy1604 518 EDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDF--KTKKMKVLVATA 576 (693)
Q Consensus 518 ~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F--~~g~~~ILVaT~ 576 (693)
.+.+||.++++.-+....+.|.+.++.+..++|+++..++..+++.+ ..+..+||++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 56899999999999999999999999999999999999999888888 578899999997
No 200
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.32 E-value=2.1 Score=53.69 Aligned_cols=41 Identities=20% Similarity=0.093 Sum_probs=28.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRE 285 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 285 (693)
.++++++.+|+|+|||..+...+.+ .... +.+++|+.....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e-a~~~----------G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA-AQRE----------GKTCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH-HHTT----------TCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHHc----------CCcEEEEEcccc
Confidence 3689999999999999875444443 3322 336888876533
No 201
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=76.84 E-value=5.5 Score=37.83 Aligned_cols=72 Identities=18% Similarity=0.141 Sum_probs=52.5
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-c-----cccCCC
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCET-----EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-A-----SRGLDI 584 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-~-----~~GiDi 584 (693)
....++||.++++.-+..+++.++.. ++.+..++|+.+..++...+ ...+|+|+|.- + ...+++
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~ 164 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNP 164 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCG
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccc
Confidence 34568999999999999988887653 67788999998876665443 25789999962 1 234566
Q ss_pred CCCCEEEE
Q psy1604 585 KGIRHVIN 592 (693)
Q Consensus 585 p~v~~VI~ 592 (693)
.++++||.
T Consensus 165 ~~~~~lVi 172 (230)
T 2oxc_A 165 GSIRLFIL 172 (230)
T ss_dssp GGCCEEEE
T ss_pred ccCCEEEe
Confidence 67777664
No 202
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=76.79 E-value=7.9 Score=37.03 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=53.5
Q ss_pred CCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC-----ccc-ccCCCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA-----VAS-RGLDIKG 586 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~-----v~~-~GiDip~ 586 (693)
...++||.++++.-+..+.+.++. .++.+..++|+.+...+...+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999999888776654 47889999999887776555442 478999995 222 2357788
Q ss_pred CCEEEE
Q psy1604 587 IRHVIN 592 (693)
Q Consensus 587 v~~VI~ 592 (693)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888775
No 203
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=76.57 E-value=3.8 Score=41.78 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=30.3
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
..|.-+++.|++|+|||..++-.+.+ +... +.+++|++.- .-..|+...+
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~-~a~~----------g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLS-ALND----------DRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHH-HHHT----------TCEEEEEESS-SCHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH-HHHc----------CCeEEEEeCC-CCHHHHHHHH
Confidence 45667899999999999864443333 3322 2257777553 3345555544
No 204
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=76.43 E-value=6.3 Score=39.63 Aligned_cols=92 Identities=10% Similarity=0.096 Sum_probs=51.6
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGAS 313 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~ 313 (693)
.| .+++.+|.|+|||...+-.+.+ +.+.. .+.+++++..-..+... .++++....
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~-~~~~g--------~g~~vlyId~E~s~~~~---ra~~lGvd~------------ 82 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSS-YMRQY--------PDAVCLFYDSEFGITPA---YLRSMGVDP------------ 82 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHH-HHHHC--------TTCEEEEEESSCCCCHH---HHHHTTCCG------------
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHH-HHhcC--------CCceEEEEeccchhhHH---HHHHhCCCH------------
Confidence 45 5889999999999864444433 33321 12368888776555332 244443211
Q ss_pred hHHHHHHHhcCCcEEEechhhHHHH-H---hc-CCcCCCceeEEEEccchhhh
Q psy1604 314 SMHFNRQLEKGCNILVATMGRLKDI-L---DR-GRISLASVRFVVLDEADRML 361 (693)
Q Consensus 314 ~~~~~~~~~~~~~IlV~Tp~~L~~~-l---~~-~~~~l~~~~~lVlDEah~l~ 361 (693)
.++++..|..+.+. + +. ..+.-..+++||||=+..+.
T Consensus 83 -----------d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 -----------ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -----------GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -----------HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 13455544443332 2 11 01233468999999999875
No 205
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=76.26 E-value=7.1 Score=41.48 Aligned_cols=117 Identities=18% Similarity=0.089 Sum_probs=55.3
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCC
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGA 312 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~ 312 (693)
..|.-+++.|++|+|||..++-.+.+..... +.+++++..- .-..|+...+..........- ...|..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~----------g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~-l~~g~l 265 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKE----------GVGVGIYSLE-MPAAQLTLRMMCSEARIDMNR-VRLGQL 265 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTT----------CCCEEEEESS-SCHHHHHHHHHHHHTTCCTTT-CCGGGC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCeEEEEECC-CCHHHHHHHHHHHHcCCCHHH-HhCCCC
Confidence 3556789999999999975444333333222 1247776543 233445444332111111000 001222
Q ss_pred ChHHHHHHH-----hcCCcEEEe-----chhhHHHHHhcCCcCCCceeEEEEccchhhhh
Q psy1604 313 SSMHFNRQL-----EKGCNILVA-----TMGRLKDILDRGRISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 313 ~~~~~~~~~-----~~~~~IlV~-----Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~ 362 (693)
....+.+.. .....+.+- |...+...+.+-. .-..+++||||..+.|..
T Consensus 266 ~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~-~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 266 TDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLV-SQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp CHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHH-HHSCCCEEEEECGGGCBC
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEcChhhcCC
Confidence 222222211 112345553 3344443332210 012578999999998864
No 206
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=76.13 E-value=3.3 Score=42.65 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=18.4
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.+..+++.+|||||||.. +-.++..+
T Consensus 122 ~~g~i~I~GptGSGKTTl-L~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT-LAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 455789999999999984 33344443
No 207
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=76.06 E-value=2.7 Score=44.67 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=32.9
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVM 288 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~ 288 (693)
...++++.|+||||||.. +..++..++..+ ..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~~g----------~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLLRG----------DRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHHTT----------CEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHHCC----------CcEEEEeCCCchhH
Confidence 457999999999999997 445555555432 36888889888754
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=75.95 E-value=6.2 Score=45.92 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=18.8
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
..++++.+|+|+|||.. +-.+.+.+.
T Consensus 191 ~~~vlL~G~pG~GKT~l-a~~la~~l~ 216 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI-VEGLAQRIV 216 (854)
T ss_dssp CCCCEEEECTTSCHHHH-HHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHH-HHHHHHHHh
Confidence 35899999999999985 333444443
No 209
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=75.32 E-value=2.5 Score=43.53 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=27.4
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTREL 286 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 286 (693)
.|.-+++.+|+|+|||.. ++.++..+.... .+++++..-..+
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~~~~g----------g~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEAQKMG----------GVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHHHHTT----------CCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHhcC----------CeEEEEeccccc
Confidence 567789999999999975 444444443322 257787665433
No 210
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=74.60 E-value=2.9 Score=40.93 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=17.1
Q ss_pred hhcCCCEEEEccCCCChhHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~ 251 (693)
+..|.-+++.+|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45777899999999999984
No 211
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=74.33 E-value=0.84 Score=47.50 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=13.2
Q ss_pred ccCceEEEEeeeCCCCCCCCCCCCC-CCCCCCCCCccee
Q psy1604 73 KIGHVRVVRAILRPDSRFSSGGGGG-GDRGNSKPGDWMC 110 (693)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~g~g~~-g~~~~~~~gdw~~ 110 (693)
++.+.-++.|++...++++||+||| |||.+...|+|.|
T Consensus 9 ~~~~~~~~~ar~~~~g~G~~g~gg~G~gGVG~STG~W~~ 47 (584)
T 4dpv_Z 9 DGGQPAVRNERATGSGNGSGGGGGGGSGGVGISTGTFNN 47 (584)
T ss_dssp -------------CCCCCCCCCCEETTEETTBCCCCCCC
T ss_pred CCCCcccccchhhccCCCCCCCCCCCCCCcccccccccC
Confidence 4455556655544433333333333 3445556699988
No 212
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=74.03 E-value=2.5 Score=45.86 Aligned_cols=29 Identities=17% Similarity=-0.081 Sum_probs=20.7
Q ss_pred HHHHhhhhh-hhcCCCEEEEccCCCChhHH
Q psy1604 223 PIQKYAIPA-GLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 223 ~~Q~~ai~~-il~g~~vlv~a~TGsGKTl~ 251 (693)
+.+...+.. +..+..+++++|||||||..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 333333333 34678899999999999984
No 213
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=73.59 E-value=14 Score=34.61 Aligned_cols=20 Identities=25% Similarity=-0.006 Sum_probs=16.7
Q ss_pred hhcCCCEEEEccCCCChhHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~ 251 (693)
+..|.-+.+.+|+|+|||..
T Consensus 22 i~~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp EESSEEEEEEESTTSSHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 34667889999999999984
No 214
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=73.53 E-value=3.4 Score=42.66 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=25.5
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPT 283 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Pt 283 (693)
.+.-+++.+++|+|||..+ +.++..+...+ .+++++..-
T Consensus 73 ~G~li~I~G~pGsGKTtla-l~la~~~~~~g----------~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLA-LAIVAQAQKAG----------GTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHH-HHHHHHHHHTT----------CCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHH-HHHHHHHHHCC----------CeEEEEECC
Confidence 5677899999999999764 44444443322 246777654
No 215
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=72.94 E-value=3.1 Score=40.23 Aligned_cols=71 Identities=58% Similarity=0.925 Sum_probs=52.8
Q ss_pred hhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhh
Q psy1604 404 ILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETI 474 (693)
Q Consensus 404 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l 474 (693)
+++.+++++...+....+....+.++++||.|.+.+.++...+..+............+.+.+++|++..+
T Consensus 153 Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~ 223 (253)
T 1wrb_A 153 LLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEI 223 (253)
T ss_dssp EEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHH
T ss_pred EEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHH
Confidence 44556667777777767777888999999999999888777777766644444334678889999987754
No 216
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=72.94 E-value=3.5 Score=38.79 Aligned_cols=32 Identities=31% Similarity=0.166 Sum_probs=26.1
Q ss_pred CCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 220 ~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
.-+.-|..++..+..|.-+.+.+|.|+|||..
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 33445777888888899999999999999983
No 217
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=72.88 E-value=4.8 Score=40.48 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=19.7
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
++++++.+|+|+|||.. +..+...+.
T Consensus 152 ~~~lll~G~~GtGKT~L-a~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL-LAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHH-HHHHHHHHH
T ss_pred CceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 57899999999999986 334455554
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=71.84 E-value=2.4 Score=48.74 Aligned_cols=104 Identities=16% Similarity=0.250 Sum_probs=0.0
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHH
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMH 316 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~ 316 (693)
++++.+|||+|||.. +-.+.+.+...... ++.+.-.++.......
T Consensus 523 ~~Ll~Gp~GtGKT~l-A~ala~~l~~~~~~-----------~i~i~~s~~~~~~~~~----------------------- 567 (758)
T 3pxi_A 523 SFIFLGPTGVGKTEL-ARALAESIFGDEES-----------MIRIDMSEYMEKHSTS----------------------- 567 (758)
T ss_dssp EEEEESCTTSSHHHH-HHHHHHHHHSCTTC-----------EEEEEGGGGCSSCCCC-----------------------
T ss_pred EEEEECCCCCCHHHH-HHHHHHHhcCCCcc-----------eEEEechhcccccccc-----------------------
Q ss_pred HHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccchhhhhCCchHHHHHHhccCCCCC------CCCcceEEee
Q psy1604 317 FNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPD------VANRQTLMFS 390 (693)
Q Consensus 317 ~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah~l~~~~~~~~i~~i~~~~~~~~------~~~~q~lllS 390 (693)
.+.+...+...... +|+|||+|.+ .......+..++....+.. ....-+++++
T Consensus 568 ---------------~~~l~~~~~~~~~~-----vl~lDEi~~~-~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 568 ---------------GGQLTEKVRRKPYS-----VVLLDAIEKA-HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ------------------CHHHHHHCSSS-----EEEEECGGGS-CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ---------------cchhhHHHHhCCCe-----EEEEeCcccc-CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Q ss_pred ccCchh
Q psy1604 391 ATFPET 396 (693)
Q Consensus 391 AT~~~~ 396 (693)
+..+..
T Consensus 627 tn~~~~ 632 (758)
T 3pxi_A 627 SNVGAS 632 (758)
T ss_dssp ESSSTT
T ss_pred CCCChh
No 219
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=71.73 E-value=9.7 Score=38.01 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=51.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHh----cCCcEEEechhhHHHHHhcCCcCCCceeE
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLE----KGCNILVATMGRLKDILDRGRISLASVRF 351 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~----~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 351 (693)
++||.++++.-+..+.+.+... ++.+..++|+.+...+...+. ...+|+|+|. .+ ...+++.++++
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~~Gidi~~v~~ 99 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-ARGLDIPQVDL 99 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-TCSTTCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-hcCccccceeE
Confidence 6899999999998888877654 578888999988766554442 3688999994 12 23467888888
Q ss_pred EEE
Q psy1604 352 VVL 354 (693)
Q Consensus 352 lVl 354 (693)
||.
T Consensus 100 VI~ 102 (300)
T 3i32_A 100 VVH 102 (300)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 220
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=71.68 E-value=23 Score=36.57 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=53.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCce
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASV 349 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~ 349 (693)
+.++||.++++..+..+++.+.+. ++.+..++|+.+.......+ ....+|+|+|. .+.. .+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR-GLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT-TSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc-CCCcccC
Confidence 457999999999999998888774 46788889888765544433 23678999995 2333 4678889
Q ss_pred eEEEE
Q psy1604 350 RFVVL 354 (693)
Q Consensus 350 ~~lVl 354 (693)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98886
No 221
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=70.49 E-value=13 Score=34.16 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=50.7
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-----ccc-cCCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCET-----EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-----ASR-GLDIK 585 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-----~~~-GiDip 585 (693)
...++||.++++..+..+++.+... +..+..++|+.+..+.... + ....+|+|+|.- +.. .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 4557999999999998888877543 5778889998876554332 2 346789999961 222 34667
Q ss_pred CCCEEEE
Q psy1604 586 GIRHVIN 592 (693)
Q Consensus 586 ~v~~VI~ 592 (693)
++++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7888774
No 222
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=70.36 E-value=5.4 Score=42.01 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=18.4
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.+..+++.+|||||||.. +-.++..+
T Consensus 166 ~ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 455689999999999984 33344433
No 223
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=70.35 E-value=13 Score=34.09 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=52.0
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC-----ccc-ccCCCCCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCET--EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA-----VAS-RGLDIKGIR 588 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~-----v~~-~GiDip~v~ 588 (693)
...++||.++++..+..+++.++.. .+.+..++|+.+...+...+. ...+|+|+|. .+. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4567999999999999999888765 467888898877655544332 2578999995 122 246677788
Q ss_pred EEEE
Q psy1604 589 HVIN 592 (693)
Q Consensus 589 ~VI~ 592 (693)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 224
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=69.96 E-value=35 Score=37.11 Aligned_cols=77 Identities=18% Similarity=0.081 Sum_probs=56.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCce
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASV 349 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~ 349 (693)
..++||.++|+.-+..+++.+.+... .++.+..++|+.........+ ....+|+|||.- + ...+++.++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~-~~GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----G-ARGMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----G-TSSCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch-----h-hcCCCcccC
Confidence 34799999999999999999887642 356788889988766544433 246889999962 2 235678888
Q ss_pred eEEEEccc
Q psy1604 350 RFVVLDEA 357 (693)
Q Consensus 350 ~~lVlDEa 357 (693)
++||.-..
T Consensus 412 ~~VI~~~~ 419 (563)
T 3i5x_A 412 HEVLQIGV 419 (563)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 88886543
No 225
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=69.72 E-value=11 Score=35.46 Aligned_cols=72 Identities=17% Similarity=0.291 Sum_probs=48.2
Q ss_pred CCCcEEEEecChHhHHHHHHHHhh---CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc------ccccCCCCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCE---TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV------ASRGLDIKGI 587 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~---~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v------~~~GiDip~v 587 (693)
...++||.++++.-+..+++.++. .++.+..++|+.+...+...+ . ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 566799999999999999888876 367788889887655443333 2 34789999951 1235667778
Q ss_pred CEEEE
Q psy1604 588 RHVIN 592 (693)
Q Consensus 588 ~~VI~ 592 (693)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88775
No 226
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=69.72 E-value=8.2 Score=36.79 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=45.4
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC-----cccc-cCCCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCET----EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA-----VASR-GLDIKG 586 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~-----v~~~-GiDip~ 586 (693)
...++||.++++..+..+++.++.. +..+..++|+.+... ..+.+..+..+|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999888887654 466777888754333 23445567789999993 3333 366777
Q ss_pred CCEEEE
Q psy1604 587 IRHVIN 592 (693)
Q Consensus 587 v~~VI~ 592 (693)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888775
No 227
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.44 E-value=3.3 Score=43.19 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=34.3
Q ss_pred CCCccccCCCCHHHHHHHHhC---CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 196 PIESFESAGLREILVKNLKKS---NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 196 ~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
|-.+|++.+=-+...+.|++. -+.+|--++...++ .-+.+|+.+|+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHH
Confidence 345788886566666666542 22344444444332 247899999999999986
No 228
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=69.05 E-value=4.3 Score=38.87 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=31.9
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
.|.-+++.|++|+|||..++-.+.+.+...+ ..++++.-. +-..++.+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~----------~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG----------EPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC----------CCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC----------CCceeeccc-CCHHHHHHHHHHc
Confidence 4577899999999999764444444333322 146666543 3455555555443
No 229
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=68.75 E-value=14 Score=37.78 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhC-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-c-----cccCCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCET-----EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-A-----SRGLDIK 585 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-~-----~~GiDip 585 (693)
...++||.++++.-+..+++.+... ++.+..++|+.+..++... +..+..+|+|+|.- + ...+++.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 3558999999999999888877653 6889999999887666544 34567799999942 1 2335677
Q ss_pred CCCEEEE
Q psy1604 586 GIRHVIN 592 (693)
Q Consensus 586 ~v~~VI~ 592 (693)
++++||.
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 7787774
No 230
>1k3v_A Capsid protein VP2; icosahadral, beta sheet, icosahedral virus; 3.50A {Porcine parvovirus} SCOP: b.121.5.2
Probab=67.57 E-value=1.5 Score=47.05 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccee
Q psy1604 85 RPDSRFSSGGGGGGDRGNSKPGDWMC 110 (693)
Q Consensus 85 ~~~~~~~~g~g~~g~~~~~~~gdw~~ 110 (693)
|..++.||+||||+++-+...|.|.|
T Consensus 23 ~~~~g~gg~gGGG~gGVg~stG~W~~ 48 (579)
T 1k3v_A 23 ESGGGGGGGGGRGAGGVGVSTGTFNN 48 (579)
T ss_dssp ---------------CTTSCCSCCCC
T ss_pred cccCCCCCCCCCCCCCcccccccccC
Confidence 44444444444444555566799988
No 231
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=67.50 E-value=2.6 Score=31.11 Aligned_cols=28 Identities=32% Similarity=0.772 Sum_probs=24.7
Q ss_pred Cccee-cCCCCCcccCcccccCCCCCCCC
Q psy1604 106 GDWMC-SCGASNFAKRDACFKCSEPKPEG 133 (693)
Q Consensus 106 gdw~~-~c~~~n~~~r~~c~~c~~~~~~~ 133 (693)
..|.| .|...|-.....|-.|+.+++..
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCcc
Confidence 48999 59999999999999999987753
No 232
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=67.24 E-value=17 Score=36.62 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=52.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCcee
Q psy1604 275 PEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASVR 350 (693)
Q Consensus 275 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 350 (693)
.++||.++++.-+..+++.+.+. +..+..++|+.+.......+ ....+|+|+|. .+.. .+++.+++
T Consensus 239 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~-----Gid~~~~~ 308 (367)
T 1hv8_A 239 FYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMSR-----GIDVNDLN 308 (367)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THHH-----HCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhhc-----CCCcccCC
Confidence 46899999999999999888875 46778888887765544333 23678999994 2222 35677888
Q ss_pred EEEEcc
Q psy1604 351 FVVLDE 356 (693)
Q Consensus 351 ~lVlDE 356 (693)
+||.-.
T Consensus 309 ~Vi~~~ 314 (367)
T 1hv8_A 309 CVINYH 314 (367)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 888644
No 233
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=66.45 E-value=7 Score=38.92 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=18.2
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
+.++++.+|+|+|||..+ -.+.+.+
T Consensus 67 ~~~vll~G~~GtGKT~la-~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA-LKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHH
Confidence 457999999999999863 3344444
No 234
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=66.07 E-value=46 Score=36.37 Aligned_cols=77 Identities=18% Similarity=0.081 Sum_probs=56.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCce
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASV 349 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~ 349 (693)
..++||.++|+.-+..+++.+.+... .++.+..++|+.........+ ....+|+|||.- + ...+++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-----~-~~GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----G-ARGMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----G-TSSCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-----h-hcCCCcccC
Confidence 34799999999999999999987643 356788889988766544433 246889999962 2 235678889
Q ss_pred eEEEEccc
Q psy1604 350 RFVVLDEA 357 (693)
Q Consensus 350 ~~lVlDEa 357 (693)
++||.-..
T Consensus 361 ~~VI~~~~ 368 (579)
T 3sqw_A 361 HEVLQIGV 368 (579)
T ss_dssp CEEEEESC
T ss_pred CEEEEcCC
Confidence 98886554
No 235
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=65.41 E-value=2.8 Score=42.02 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=29.5
Q ss_pred CccccCCCCHHHHHHHHhC---CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 198 ESFESAGLREILVKNLKKS---NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
.+|+++.-.+.+.+.|+.. ....|..++.. .+..++.+++.+|+|+|||+.
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCSEEEEECSSSSSHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHc---CCCCCceEEEECCCCcCHHHH
Confidence 4577776566666666542 01111111111 123467899999999999985
No 236
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=64.80 E-value=30 Score=33.41 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=51.7
Q ss_pred CCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC-----ccc--ccCCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA-----VAS--RGLDIK 585 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~-----v~~--~GiDip 585 (693)
...++||.++++.-+..+++.+++ .+..+..++|+.....+...+ ..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 466799999999999988887765 356778888887766554433 333 78999994 121 246778
Q ss_pred CCCEEEE
Q psy1604 586 GIRHVIN 592 (693)
Q Consensus 586 ~v~~VI~ 592 (693)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888775
No 237
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=64.79 E-value=32 Score=34.97 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=55.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCce
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASV 349 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~ 349 (693)
..++||.++++.-+..+++.+.+. +..+..++|+.+.......+ ....+|+|+|. .-...+++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccC
Confidence 347999999999999999888775 46778888888766544443 23578999995 12335678899
Q ss_pred eEEEEccch
Q psy1604 350 RFVVLDEAD 358 (693)
Q Consensus 350 ~~lVlDEah 358 (693)
++||.-...
T Consensus 313 ~~Vi~~~~p 321 (395)
T 3pey_A 313 SMVVNYDLP 321 (395)
T ss_dssp EEEEESSCC
T ss_pred CEEEEcCCC
Confidence 999875544
No 238
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=64.36 E-value=6.6 Score=40.85 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=29.2
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTREL 286 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~L 286 (693)
..+.++++.++||+|||... ..++..+... +.+++++=|..+.
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~-~~~~~~~~~~----------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTA-KMLLLREYMQ----------GSRVIIIDPEREY 75 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHH-HHHHHHHHTT----------TCCEEEEESSCCS
T ss_pred cccCceEEEcCCCCCHHHHH-HHHHHHHHHC----------CCEEEEEeCCcCH
Confidence 35678999999999999863 3344444322 2367888887654
No 239
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=63.96 E-value=3.5 Score=42.59 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=20.8
Q ss_pred hhhcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 231 AGLEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 231 ~il~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.+..|..+++++|||||||.. +.++..+
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl--l~~l~~~ 198 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL--MKALMQE 198 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH--HHHHHTT
T ss_pred HHhcCCEEEEECCCCCCHHHH--HHHHHhc
Confidence 345788999999999999983 4444333
No 240
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=63.82 E-value=41 Score=37.60 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=57.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH---h-cCCcEEEechhhHHHHHhcCCcCCCce
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL---E-KGCNILVATMGRLKDILDRGRISLASV 349 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~---~-~~~~IlV~Tp~~L~~~l~~~~~~l~~~ 349 (693)
+.++||.++|+..+..+.+.+... ++++..++++.........+ . ...+|+|+|-- + ...+++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~-----l-~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----L-REGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC-----C-STTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch-----h-hCCcccCCC
Confidence 347999999999999998888775 46777788877655544442 2 35889999851 2 335678899
Q ss_pred eEEEEccchhh
Q psy1604 350 RFVVLDEADRM 360 (693)
Q Consensus 350 ~~lVlDEah~l 360 (693)
++||+-+++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999998754
No 241
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=63.73 E-value=19 Score=37.79 Aligned_cols=96 Identities=24% Similarity=0.210 Sum_probs=60.0
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeC--------CCChH
Q psy1604 244 TGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYG--------GASSM 315 (693)
Q Consensus 244 TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~g--------g~~~~ 315 (693)
..+.|... +.-++....... .+.++||.++++..+..+.+.+.+. ++.+..++| +.+..
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~~--------~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~ 406 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQRK--------QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQR 406 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHHC--------TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CC
T ss_pred CCChHHHH-HHHHHHHHhccC--------CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHH
Confidence 34556554 455555543211 2337999999999999998888775 567788888 55444
Q ss_pred HHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCceeEEEEccch
Q psy1604 316 HFNRQL----EKGCNILVATMGRLKDILDRGRISLASVRFVVLDEAD 358 (693)
Q Consensus 316 ~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEah 358 (693)
.+...+ ....+|+|+|. .+ ...+++..+++||+-+..
T Consensus 407 ~r~~~~~~F~~~~~~vLv~T~-~~-----~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 407 EQKLILDEFARGEFNVLVATS-VG-----EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHHHHHHHHHTSCSEEEECG-GG-----GGGGGSTTCCEEEESSCC
T ss_pred HHHHHHHHHhcCCceEEEECC-cc-----ccCCCchhCCEEEEeCCC
Confidence 333332 23578999993 22 224678888888865543
No 242
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=63.57 E-value=4.7 Score=23.80 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=13.8
Q ss_pred cccccCCCCCCCCCCCC
Q psy1604 121 DACFKCSEPKPEGAGGG 137 (693)
Q Consensus 121 ~~c~~c~~~~~~~~~~~ 137 (693)
..||+||+++|.+..+.
T Consensus 3 ~~Cf~CG~~GH~ardC~ 19 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCK 19 (26)
T ss_dssp CBCTTTCCBSSCTTTTT
T ss_pred CeeEeCCCCCcccccCC
Confidence 47999999999886654
No 243
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=63.35 E-value=9.9 Score=38.89 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=18.6
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
++.+++.+|+|+|||.. +..+.+.+
T Consensus 70 ~~~vLl~GppGtGKT~l-a~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI-AMGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHh
Confidence 46899999999999986 33344444
No 244
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=63.00 E-value=23 Score=36.49 Aligned_cols=71 Identities=18% Similarity=0.131 Sum_probs=53.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCcee
Q psy1604 275 PEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASVR 350 (693)
Q Consensus 275 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 350 (693)
.++||.++++.-+..+++.+.+. +..+..++|+.+.......+ ....+|+|+|. .+ ...+++.+++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccCCC
Confidence 47999999999999999988875 46778888888766554443 23678999995 22 2356788999
Q ss_pred EEEEc
Q psy1604 351 FVVLD 355 (693)
Q Consensus 351 ~lVlD 355 (693)
+||.-
T Consensus 337 ~Vi~~ 341 (412)
T 3fht_A 337 VVINF 341 (412)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 98853
No 245
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.80 E-value=10 Score=40.13 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=35.5
Q ss_pred CCCCccccCCCCHHHHHHHHhC---CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 195 RPIESFESAGLREILVKNLKKS---NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 195 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
.|-.+|++.+=-+.+.+.|++. -+.+|--++...+ ..-+.+|+.+|+|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHH
Confidence 3446799987777777777653 1223333333322 2347899999999999985
No 246
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=62.02 E-value=33 Score=27.70 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=41.7
Q ss_pred EEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Q psy1604 521 VIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMK 570 (693)
Q Consensus 521 vLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ 570 (693)
.+||.+.......+...++..|..+..++++.....|.+-++.|...-.+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 46788888888888999999999999999999999888888888764433
No 247
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=61.63 E-value=5 Score=36.55 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.|+-+++++|+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999984
No 248
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=65.62 E-value=1.7 Score=39.36 Aligned_cols=71 Identities=23% Similarity=0.204 Sum_probs=46.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHh----cCCcEEEechhhHHHHHhcCCcCCCcee
Q psy1604 275 PEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLE----KGCNILVATMGRLKDILDRGRISLASVR 350 (693)
Q Consensus 275 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~----~~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 350 (693)
.++||.++++..+..+.+.+.+. ++.+..++|+.+.......+. ...+|+|+|. .+ .. .+++.+++
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~~-Gid~~~~~ 100 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VA----AR-GIDIPDVS 100 (170)
Confidence 36899999999998888877664 466777788766544333332 2567999983 22 11 34566677
Q ss_pred EEEEc
Q psy1604 351 FVVLD 355 (693)
Q Consensus 351 ~lVlD 355 (693)
+||.-
T Consensus 101 ~Vi~~ 105 (170)
T 2yjt_D 101 HVFNF 105 (170)
Confidence 77653
No 249
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.43 E-value=3.7 Score=43.40 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCCccccCCCCHHHHHHHHhC---CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 196 PIESFESAGLREILVKNLKKS---NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 196 ~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
|-.+|++.+=-+...+.|+.. -+.+|--++...++ .-+.+|+.+|+|+|||+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~---~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK---PPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeEEEECCCCCcHHHH
Confidence 345788886666666666542 22333334433332 347899999999999996
No 250
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=61.30 E-value=5.7 Score=38.64 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.+.++++.+++|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 467999999999999985
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=60.86 E-value=5.7 Score=36.83 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=17.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
.++-+.+.+|+|+|||.. +-++..++
T Consensus 3 ~g~~i~lvGpsGaGKSTL--l~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL--LKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 467889999999999984 33444333
No 252
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=60.63 E-value=11 Score=35.45 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=45.2
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcc------cccCCCC
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVA------SRGLDIK 585 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~------~~GiDip 585 (693)
....++||.++++..+..+++.+.. .++.+..++|+.+..++... +. ..+|+|+|.-. ...+++.
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchh
Confidence 3456899999999999888887754 36778889998765544332 22 37899999521 2346667
Q ss_pred CCCEEEE
Q psy1604 586 GIRHVIN 592 (693)
Q Consensus 586 ~v~~VI~ 592 (693)
.+++||.
T Consensus 155 ~~~~iVi 161 (224)
T 1qde_A 155 KIKMFIL 161 (224)
T ss_dssp TCCEEEE
T ss_pred hCcEEEE
Confidence 7787774
No 253
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=60.46 E-value=8.7 Score=26.53 Aligned_cols=27 Identities=26% Similarity=0.805 Sum_probs=22.7
Q ss_pred CCccee-cCCCCCcccCcccccCCCCCC
Q psy1604 105 PGDWMC-SCGASNFAKRDACFKCSEPKP 131 (693)
Q Consensus 105 ~gdw~~-~c~~~n~~~r~~c~~c~~~~~ 131 (693)
..-|.| .|...|-.-..-|++|-+-+.
T Consensus 9 eD~WkC~~C~k~N~Pl~ryC~rCwaLRk 36 (53)
T 2cr8_A 9 EDEWQCTECKKFNSPSKRYCFRCWALRK 36 (53)
T ss_dssp SCCEECSSSCCEECSSCCBCTTTCCBCC
T ss_pred cceeecccccccCCCccchhHHHHHhhc
Confidence 357999 699999988889999988654
No 254
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=60.08 E-value=15 Score=24.21 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.1
Q ss_pred cCcccccCCCCCCCCCCCCC
Q psy1604 119 KRDACFKCSEPKPEGAGGGA 138 (693)
Q Consensus 119 ~r~~c~~c~~~~~~~~~~~~ 138 (693)
....||.|++.+|.+..+..
T Consensus 9 ~~~~C~~Cgk~GH~ardCP~ 28 (40)
T 1a6b_B 9 DRDQCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp CSSSCSSSCCTTCCTTSCSS
T ss_pred CCCeeeECCCCCcchhhCcC
Confidence 46799999999999876643
No 255
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.04 E-value=6.9 Score=41.08 Aligned_cols=53 Identities=26% Similarity=0.408 Sum_probs=34.2
Q ss_pred CCCccccCCCCHHHHHHHHhC---CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 196 PIESFESAGLREILVKNLKKS---NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 196 ~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
|-.+|++.+=-+...+.|++. -+.+|--++...++ .-+.+|+.+|+|+|||+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 445788886555666666542 23344444444432 246899999999999985
No 256
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=59.98 E-value=6 Score=38.19 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=27.7
Q ss_pred CCccccCCCCHHHHHHHHhCC--CCCCCHHHHhhhhhhh--cCCCEEEEccCCCChhHH
Q psy1604 197 IESFESAGLREILVKNLKKSN--YTKPTPIQKYAIPAGL--EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g--~~~p~~~Q~~ai~~il--~g~~vlv~a~TGsGKTl~ 251 (693)
-.+|+++.-.+.....++..- +..+ ..+..+- -.+.+++.+|+|+|||..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 345777655566655555321 1111 1222111 124599999999999984
No 257
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=59.78 E-value=30 Score=34.73 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=14.1
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
++-+++.+++|+|||..
T Consensus 105 ~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp CEEEEEESSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45678889999999975
No 258
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=59.55 E-value=7 Score=35.32 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.6
Q ss_pred hcCCCEEEEccCCCChhHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~ 251 (693)
...+.+++.+++|||||..
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 4567899999999999986
No 259
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=59.00 E-value=23 Score=33.33 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=49.3
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-c----cc--cCCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCET----EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-A----SR--GLDIK 585 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-~----~~--GiDip 585 (693)
...++||.++++..+..+++.++.. ++.+..++|+.+.......+ ...+|+|+|.- + .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4567999999999999888887654 47788899987655544333 36789999952 1 12 35667
Q ss_pred CCCEEEE
Q psy1604 586 GIRHVIN 592 (693)
Q Consensus 586 ~v~~VI~ 592 (693)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777775
No 260
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=58.94 E-value=16 Score=44.20 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=41.1
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcCCCCc-ccCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLESPGEL-VTGYCAQPEVIICAPTRELVMQIHEVACKY 297 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~-~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 297 (693)
..+|.|.-|||||.+...-++..++..+... ......-.++|+|+=|+.-+.+..+.+.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4599999999999986666666665432000 000012237999999999888888777654
No 261
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.89 E-value=4.7 Score=42.54 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=33.1
Q ss_pred CCCccccCCCCHHHHHHHHhC---CCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 196 PIESFESAGLREILVKNLKKS---NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 196 ~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
|-.+|++.+=-+.+.+.|++. -+.+|--++...++ ..+.+|+.+|+|+|||+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~---~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGID---PPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTTTHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCceEEEECCCCCCHHHH
Confidence 345788886666666666542 22233333333322 346799999999999986
No 262
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=58.39 E-value=31 Score=35.36 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=52.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCcee
Q psy1604 275 PEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASVR 350 (693)
Q Consensus 275 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 350 (693)
.++||.++++.-+..+++.+... +..+..++|+.+.......+ ....+|+|+|. .+ ...+++.+++
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~~~ 328 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQAVN 328 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTTEE
T ss_pred CcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccCCC
Confidence 47999999999999999988876 35677888888765544433 23578999994 11 2346788888
Q ss_pred EEEEcc
Q psy1604 351 FVVLDE 356 (693)
Q Consensus 351 ~lVlDE 356 (693)
+||.-.
T Consensus 329 ~Vi~~~ 334 (400)
T 1s2m_A 329 VVINFD 334 (400)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888643
No 263
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=57.94 E-value=17 Score=35.83 Aligned_cols=17 Identities=29% Similarity=0.476 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
..++++.+|+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 56899999999999985
No 264
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=57.80 E-value=15 Score=35.84 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCCCCHHHHhh-hhhhhcCC-----CEEEEccCCCChhHHHH
Q psy1604 207 EILVKNLKKSNYTKPTPIQKYA-IPAGLEGR-----DLMGCAQTGSGKTAAFL 253 (693)
Q Consensus 207 ~~l~~~l~~~g~~~p~~~Q~~a-i~~il~g~-----~vlv~a~TGsGKTl~~l 253 (693)
..+.+.|+..|+. +++... +..+++++ .+++.+|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4678888877775 555322 44444432 48999999999998643
No 265
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=57.56 E-value=32 Score=35.48 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=52.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCceeE
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASVRF 351 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 351 (693)
++||.++++.-+..+.+.+.+. ++.+..++|+.+.......+ ....+|+|+|. .+ ...+++.++++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v~~ 347 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQVSL 347 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTEEE
T ss_pred cEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccCCE
Confidence 7999999999999998888774 46778888888765544433 23678999995 12 23567888998
Q ss_pred EEEc
Q psy1604 352 VVLD 355 (693)
Q Consensus 352 lVlD 355 (693)
||.-
T Consensus 348 Vi~~ 351 (410)
T 2j0s_A 348 IINY 351 (410)
T ss_dssp EEES
T ss_pred EEEE
Confidence 8863
No 266
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=57.55 E-value=5.5 Score=41.26 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=16.8
Q ss_pred hhcCCCEEEEccCCCChhHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~ 251 (693)
+..+..+++.+|||||||..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34677899999999999984
No 267
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=57.44 E-value=15 Score=38.80 Aligned_cols=53 Identities=8% Similarity=-0.016 Sum_probs=39.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEech
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATM 332 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp 332 (693)
++||.+|++.-+..+++.+.+. +.++..++|...............+|+|||.
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 6899999999999999988876 4678888886433333333345689999996
No 268
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=57.43 E-value=12 Score=35.08 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=16.7
Q ss_pred hhcCCCEEEEccCCCChhHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~ 251 (693)
+..|.-+++.+++|+|||..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHH
Confidence 34577889999999999975
No 269
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=57.38 E-value=4.1 Score=41.45 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=20.2
Q ss_pred hhcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
+..|..+++.++||||||. ++-++..+
T Consensus 168 i~~g~~v~i~G~~GsGKTT--ll~~l~g~ 194 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT--YIKSIMEF 194 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH--HHHHGGGG
T ss_pred ccCCCEEEEECCCCCCHHH--HHHHHhCC
Confidence 3468899999999999998 34444334
No 270
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=57.00 E-value=6.1 Score=40.53 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=18.2
Q ss_pred hhhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 228 AIPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 228 ai~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
.+..+++|.| ++.-++||||||++.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3455667765 556689999999973
No 271
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=57.00 E-value=18 Score=36.30 Aligned_cols=53 Identities=13% Similarity=-0.100 Sum_probs=32.0
Q ss_pred hhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACK 296 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 296 (693)
+..|.-++++|++|+|||..++-.+.+.. ..+ .++++++-- .-..|+...+..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g----------~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMS-DND----------DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHH-TTT----------CEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC----------CeEEEEECC-CCHHHHHHHHHH
Confidence 34567799999999999975444333333 221 257777643 444555555544
No 272
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=56.55 E-value=7.3 Score=40.02 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
...++++.+|+|+|||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 456899999999999985
No 273
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=56.31 E-value=3.5 Score=40.70 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=25.6
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHH-Hhhhhhh--hcCCCEEEEccCCCChhHH
Q psy1604 197 IESFESAGLREILVKNLKKSNYTKPTPIQ-KYAIPAG--LEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q-~~ai~~i--l~g~~vlv~a~TGsGKTl~ 251 (693)
-.+|++.+-.+.+.+.|++.=. .|+. .+++..+ .-.+.+++.+|+|+|||+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 3467777766777777654211 0111 1111111 1124499999999999984
No 274
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=56.13 E-value=5.1 Score=43.27 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=21.0
Q ss_pred HhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 226 KYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 226 ~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
..++..+..+.++++.+|+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 34455566789999999999999984
No 275
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=56.07 E-value=36 Score=35.70 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=13.9
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
++.+++.++.|+|||..
T Consensus 98 ~~vi~i~G~~GsGKTT~ 114 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTT 114 (425)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44577889999999985
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=55.84 E-value=7.8 Score=35.79 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.++.+++.+++|||||..
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 567899999999999985
No 277
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=55.12 E-value=8.1 Score=36.42 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=19.4
Q ss_pred hhcCCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
+..|+-+.+.+|+|+|||.. +-++..++
T Consensus 20 i~~G~~~~lvGpsGsGKSTL--l~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL--IKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH--HHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 34678899999999999983 44444443
No 278
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=54.83 E-value=20 Score=42.71 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=56.2
Q ss_pred CCCcEEEEecChHhHHHHHHHHhh----CCC----ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-ccccCC-CCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCE----TEI----ATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-ASRGLD-IKG 586 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~----~~~----~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-~~~GiD-ip~ 586 (693)
.+.++||.++++.-+..+++.++. .++ .+..+||+.+..++.+.++.+++ .+|+|+|+- +..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 456899999999999888887764 356 78999999999888888887777 899999952 221111 557
Q ss_pred CCEEEE
Q psy1604 587 IRHVIN 592 (693)
Q Consensus 587 v~~VI~ 592 (693)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 279
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=54.68 E-value=8.3 Score=39.37 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=19.3
Q ss_pred hhhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 228 AIPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 228 ai~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
.+..+++|.| ++.-++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5666778876 456789999999984
No 280
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=54.55 E-value=11 Score=35.33 Aligned_cols=67 Identities=37% Similarity=0.695 Sum_probs=47.0
Q ss_pred hhhhchhhhHHHHhhccccccceeEEEechhhhhhhcCcccchhHHhhcccCCccccccceeecccCchhh
Q psy1604 404 ILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETI 474 (693)
Q Consensus 404 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l 474 (693)
+++.+++++...+....+....+.++++||.+.+...++...+..+..... ...+.+.+++|++..+
T Consensus 129 Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~----~~~~~l~~SAT~~~~~ 195 (219)
T 1q0u_A 129 IVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP----KDLQMLVFSATIPEKL 195 (219)
T ss_dssp EEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC----TTCEEEEEESCCCGGG
T ss_pred EEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC----cccEEEEEecCCCHHH
Confidence 344556666666666666778889999999999988877666655544321 3457888899887665
No 281
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=54.37 E-value=8 Score=38.68 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
...++++.+++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 467899999999999985
No 282
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=54.30 E-value=8.4 Score=37.78 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=14.0
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
+.+++.+|+|+|||..
T Consensus 74 ~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcChHHHH
Confidence 3499999999999984
No 283
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=54.25 E-value=6 Score=35.62 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
++.+++.+++|||||..
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999985
No 284
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=53.98 E-value=8.2 Score=35.62 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.|.-+.+.+|+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567788999999999984
No 285
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=53.90 E-value=4.6 Score=40.89 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=18.2
Q ss_pred hhhhcCCCEEEEccCCCChhHH
Q psy1604 230 PAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 230 ~~il~g~~vlv~a~TGsGKTl~ 251 (693)
..+..+.++++.+|+|+|||..
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHH
Confidence 3444678999999999999985
No 286
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=53.89 E-value=6.9 Score=36.46 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.++-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456789999999999865
No 287
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=53.86 E-value=4.3 Score=44.68 Aligned_cols=11 Identities=27% Similarity=0.915 Sum_probs=7.3
Q ss_pred CCCCCCCccee
Q psy1604 100 RGNSKPGDWMC 110 (693)
Q Consensus 100 ~~~~~~gdw~~ 110 (693)
|.|...|.|.|
T Consensus 220 GVG~stG~W~~ 230 (736)
T 3ng9_A 220 GVGNASGNWHC 230 (736)
T ss_dssp CTTSCSCCBCC
T ss_pred ccccccccccC
Confidence 33345699988
No 288
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=53.85 E-value=17 Score=38.52 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ 252 (693)
.++++++.+|+|+|||..+
T Consensus 62 ~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCcCCHHHHH
Confidence 3468999999999999863
No 289
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=53.83 E-value=7.7 Score=39.24 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=17.6
Q ss_pred hhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 229 IPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 229 i~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
+..+++|.| ++.-++||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344556765 566789999999983
No 290
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=53.80 E-value=7.4 Score=35.95 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.3
Q ss_pred hcCCCEEEEccCCCChhHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~ 251 (693)
..+.-+++.+++|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4577789999999999984
No 291
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=53.72 E-value=12 Score=27.02 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=14.8
Q ss_pred CCCcceecCCCCCc-----ccCcccccCCCCCCCCCCCC
Q psy1604 104 KPGDWMCSCGASNF-----AKRDACFKCSEPKPEGAGGG 137 (693)
Q Consensus 104 ~~gdw~~~c~~~n~-----~~r~~c~~c~~~~~~~~~~~ 137 (693)
+.|+|.-.|....- .....||+|++++|.+..+.
T Consensus 9 ~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~ 47 (60)
T 1cl4_A 9 KKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECK 47 (60)
T ss_dssp --------------------CCCSCSSCSSCSSCSTTCC
T ss_pred CCCcCHhhCcCCCCCccccCCCcceeECCCCCCccCcCC
Confidence 44666555544321 13468999999999876654
No 292
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=53.64 E-value=19 Score=35.94 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.1
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
++-+++.+++|+|||..
T Consensus 104 ~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 34578899999999975
No 293
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=53.49 E-value=6.3 Score=39.59 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.6
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
+-+++++|||+|||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 3478899999999986
No 294
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=53.38 E-value=6.7 Score=39.81 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=14.1
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
+.++|++|||+|||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4688999999999986
No 295
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=53.19 E-value=25 Score=35.87 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=28.9
Q ss_pred CCccccCCCCHHHHHHHHhCCCCCCCHHHH-hhhh-hhhcCCCEEEEccCCCChhHH
Q psy1604 197 IESFESAGLREILVKNLKKSNYTKPTPIQK-YAIP-AGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 197 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~-~ai~-~il~g~~vlv~a~TGsGKTl~ 251 (693)
..+|+++.-.+..++.|.+.-. .|... +.+. .....+.+++.+|+|+|||..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGLRGPPKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGSCCSEEEEESSTTSSHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhccCCCceEEEECCCCCCHHHH
Confidence 3467776556666666654210 00000 0000 112357899999999999986
No 296
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=53.12 E-value=16 Score=38.67 Aligned_cols=68 Identities=12% Similarity=-0.003 Sum_probs=44.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEE
Q psy1604 275 PEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVV 353 (693)
Q Consensus 275 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lV 353 (693)
.++||.||++.-+..+++.+.+. ++++..++|...............+|+|||.- +. ..+++. +++||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v-----~e-~GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATDI-----AE-MGANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESSS-----TT-CCTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECCh-----hh-eeeccC-ceEEE
Confidence 36999999999999999988875 46778888754333333333446899999951 22 245677 77776
No 297
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=53.06 E-value=20 Score=37.32 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAFL 253 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~l 253 (693)
|.-+.+.+++|+|||....
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 4568899999999998543
No 298
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=52.83 E-value=8.4 Score=39.38 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=19.5
Q ss_pred hhhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 228 AIPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 228 ai~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
.+..+++|.| ++.-++||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5667778876 456689999999984
No 299
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=52.56 E-value=7.3 Score=39.71 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=17.3
Q ss_pred hhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 229 IPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 229 i~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
+..+++|.| ++.-++||||||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 334456665 566789999999983
No 300
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=52.53 E-value=45 Score=35.63 Aligned_cols=74 Identities=18% Similarity=0.112 Sum_probs=50.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH----hcCCcEEEechhhHHHHHhcCCcCCCceeE
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL----EKGCNILVATMGRLKDILDRGRISLASVRF 351 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~----~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~ 351 (693)
+.+|++.+..-+..+.+.+.+.. .++..++|+.+.......+ ....+|+|+|+..+-. .+++.++++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 34555555666666666665532 3778888888765543332 2357899999877755 567889999
Q ss_pred EEEccch
Q psy1604 352 VVLDEAD 358 (693)
Q Consensus 352 lVlDEah 358 (693)
||+....
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9998776
No 301
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=52.30 E-value=9.6 Score=34.74 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=16.5
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
+-+.+.+|+|+|||.. +-++..+
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHHHH
T ss_pred CEEEEECCCCCCHHHH--HHHHHhh
Confidence 4578999999999984 3344433
No 302
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=52.22 E-value=5.5 Score=36.36 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=16.7
Q ss_pred hhcCCCEEEEccCCCChhHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~ 251 (693)
+..|..+++.+++|||||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34577889999999999984
No 303
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}
Probab=52.20 E-value=4.1 Score=44.69 Aligned_cols=9 Identities=44% Similarity=1.368 Sum_probs=6.4
Q ss_pred CCCCCccee
Q psy1604 102 NSKPGDWMC 110 (693)
Q Consensus 102 ~~~~gdw~~ 110 (693)
+...|.|.|
T Consensus 212 G~stG~W~~ 220 (724)
T 3ntt_A 212 GNASGDWHC 220 (724)
T ss_dssp SSCSCCCCC
T ss_pred ccccccccC
Confidence 345699988
No 304
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=52.13 E-value=8.9 Score=35.69 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=19.2
Q ss_pred hhhcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 231 AGLEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 231 ~il~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.+..|+-+.+.+|+|+|||.. +-++..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL--l~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV--VRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH--HHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 566788899999999999984 4444444
No 305
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=52.06 E-value=11 Score=24.59 Aligned_cols=28 Identities=21% Similarity=0.584 Sum_probs=16.5
Q ss_pred CCcceecCCCCCcccCcccccCCCCCCCCCC
Q psy1604 105 PGDWMCSCGASNFAKRDACFKCSEPKPEGAG 135 (693)
Q Consensus 105 ~gdw~~~c~~~n~~~r~~c~~c~~~~~~~~~ 135 (693)
.|+|+-.|... +...|++|++++|.+..
T Consensus 9 ~GH~a~~C~~~---~~~~C~~Cg~~GH~~~~ 36 (39)
T 2a51_A 9 PGHTARMCRQP---RQEGCWNCGSKEHRFAQ 36 (39)
T ss_dssp BSSCTTTCCSC---CCSSCTTTCCSSSCTTT
T ss_pred CCcccccCCCC---CCCccccCCCCCCccCc
Confidence 35554445432 24578888888776543
No 306
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=52.03 E-value=7.9 Score=40.40 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=17.3
Q ss_pred hhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 229 IPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 229 i~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
+..++.|.| ++.-++||||||.+.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 344556754 566789999999984
No 307
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=51.67 E-value=8.7 Score=38.93 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=18.5
Q ss_pred hhhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 228 AIPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 228 ai~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
.+..+++|.| ++..++||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4455667765 556789999999973
No 308
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=51.58 E-value=8.5 Score=39.66 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=17.4
Q ss_pred hhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 229 IPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 229 i~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
+..+++|.| ++.-++||||||.+.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 344567765 556789999999973
No 309
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=51.47 E-value=8.7 Score=39.24 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=16.7
Q ss_pred hhhhcCCC--EEEEccCCCChhHHH
Q psy1604 230 PAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 230 ~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
..+++|.| ++.-++||||||...
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34456655 556789999999973
No 310
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=51.47 E-value=10 Score=34.36 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCChhHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ 252 (693)
.+.+++.+++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457899999999999863
No 311
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=51.34 E-value=45 Score=35.80 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=17.0
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 236 RDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
+.+++++++|+|||..+ ..+...+.
T Consensus 102 ~vI~ivG~~GvGKTTl~-~kLA~~l~ 126 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTC-SKLAYYYQ 126 (504)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 35788899999999863 33333343
No 312
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=51.26 E-value=15 Score=36.62 Aligned_cols=68 Identities=31% Similarity=0.443 Sum_probs=47.3
Q ss_pred hhhhhchhhhHHHHhh-ccccccceeEEEechhhhhhh-cCcccchhHHhhcccCCccccccceeecccCchhh
Q psy1604 403 NILVATMGRLKDILDR-GRISLASVRFVVLDEADRMLD-MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETI 474 (693)
Q Consensus 403 ~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l 474 (693)
.+++.+|+++..++.. ..+.+..+.++++|+.|.+++ .++......+.... ....+.+.+++|++..+
T Consensus 212 ~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~----~~~~q~i~~SAT~~~~v 281 (300)
T 3fmo_B 212 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSV 281 (300)
T ss_dssp SEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS----CTTCEEEEEESCCCHHH
T ss_pred CEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC----CCCCEEEEEeccCCHHH
Confidence 3556677777777754 456678899999999999987 45444444443322 23568899999988765
No 313
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=51.19 E-value=9 Score=39.25 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=17.4
Q ss_pred hhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 229 IPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 229 i~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
+..++.|.| ++.-++||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 334556765 566789999999973
No 314
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=51.16 E-value=8.8 Score=39.50 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=17.4
Q ss_pred hhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 229 IPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 229 i~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
+..+++|.| ++..++||||||...
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 445567765 556789999999873
No 315
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=51.14 E-value=8.6 Score=38.51 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=15.8
Q ss_pred CEEEEccCCCChhHHHHHHHHHH
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHH 259 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~ 259 (693)
-+++++|||||||..+ ..+.+.
T Consensus 12 ~i~i~GptgsGKt~la-~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALA-IELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHH
T ss_pred EEEEECCCccCHHHHH-HHHHHh
Confidence 4688999999999863 333433
No 316
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=51.00 E-value=43 Score=34.07 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=51.0
Q ss_pred CCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-----c-cccCCCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-----A-SRGLDIKG 586 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-----~-~~GiDip~ 586 (693)
...++||.++++..+..+++.+.. .++.+..++|+.+..++...+. ..+|+|+|.- + ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999999888777654 4678899999988776655443 3679999942 1 22345666
Q ss_pred CCEEEE
Q psy1604 587 IRHVIN 592 (693)
Q Consensus 587 v~~VI~ 592 (693)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 317
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=50.99 E-value=11 Score=33.66 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
+..+++.++.|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45789999999999984
No 318
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=50.99 E-value=8.8 Score=39.20 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=17.3
Q ss_pred hhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 229 IPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 229 i~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
+..+++|.| ++.-++||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 344556755 566789999999974
No 319
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=50.81 E-value=6.6 Score=38.87 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=28.4
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHH-Hhhhhhh-hcCCCEEEEccCCCChhHH
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQ-KYAIPAG-LEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q-~~ai~~i-l~g~~vlv~a~TGsGKTl~ 251 (693)
.+|+++.=.+...+.+...-. . +.. .+.+..+ ...+.+++.+|+|+|||..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~-~--~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVI-L--PSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTH-H--HHHCGGGSCGGGCCCSEEEEESSSSSCHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHH-h--hhhCHHHHhcCCCCCCeEEEECcCCCCHHHH
Confidence 456666556666666653210 0 000 0000111 2357899999999999985
No 320
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=50.78 E-value=9 Score=39.38 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=17.4
Q ss_pred hhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 229 IPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 229 i~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
+..++.|.| ++.-++||||||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 334556765 566789999999983
No 321
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=50.76 E-value=8.9 Score=39.30 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=18.0
Q ss_pred hhhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 228 AIPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 228 ai~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
.+..+++|.| ++.-++||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3445567765 455689999999973
No 322
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=50.58 E-value=9.1 Score=35.69 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.++-+++.+|+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466788999999999985
No 323
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=50.52 E-value=9.3 Score=39.15 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=17.5
Q ss_pred hhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 229 IPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 229 i~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
+..+++|.| ++.-++||||||...
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 344567765 566789999999973
No 324
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=50.49 E-value=9.2 Score=39.01 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=17.4
Q ss_pred hhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 229 IPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 229 i~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
+..+++|.| ++.-++||||||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 344556765 556789999999974
No 325
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=50.46 E-value=9.3 Score=37.94 Aligned_cols=16 Identities=25% Similarity=0.090 Sum_probs=14.3
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
+.+++.+|+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5788999999999985
No 326
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=50.38 E-value=51 Score=37.59 Aligned_cols=74 Identities=12% Similarity=0.211 Sum_probs=53.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHH-------hcCCCeeEEEEeCCCChHHHHHHHhc---------CCcEEEechhhHHHH
Q psy1604 275 PEVIICAPTRELVMQIHEVACKY-------AYSSVLKICLHYGGASSMHFNRQLEK---------GCNILVATMGRLKDI 338 (693)
Q Consensus 275 ~~vLil~Ptr~La~Q~~~~~~~~-------~~~~~l~~~~~~gg~~~~~~~~~~~~---------~~~IlV~Tp~~L~~~ 338 (693)
.++||.+|++.-+.++++.+.+. ....++.+..++|+.+...+...+.. ...|||||. .
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-i---- 378 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-I---- 378 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-H----
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-H----
Confidence 47999999999999998888752 22356889999999887766554432 357999995 2
Q ss_pred HhcCCcCCCceeEEEE
Q psy1604 339 LDRGRISLASVRFVVL 354 (693)
Q Consensus 339 l~~~~~~l~~~~~lVl 354 (693)
+.. .+++.++.+||-
T Consensus 379 ae~-GidIp~v~~VId 393 (773)
T 2xau_A 379 AET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHH-TCCCTTEEEEEE
T ss_pred HHh-CcCcCCeEEEEe
Confidence 222 467788887774
No 327
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=50.35 E-value=13 Score=37.03 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.++.+++.+++|+|||..
T Consensus 104 ~g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356788999999999985
No 328
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=50.17 E-value=21 Score=38.53 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=18.6
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMH 258 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~ 258 (693)
.+.++++.+.||||||.. +-.++.
T Consensus 166 ~~pHlLIaG~TGSGKSt~-L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG-VNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHH-HHHHHH
T ss_pred cCceEEEECCCCCCHHHH-HHHHHH
Confidence 467899999999999986 444443
No 329
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=50.11 E-value=9.2 Score=39.15 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=18.3
Q ss_pred hhhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 228 AIPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 228 ai~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
.+..+++|.| ++.-++||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3455667766 456689999999983
No 330
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=50.11 E-value=22 Score=29.00 Aligned_cols=37 Identities=8% Similarity=0.151 Sum_probs=32.2
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCC
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSR 552 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~ 552 (693)
....++++||.+-..+...+..|.+.|+++..+.|++
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 3456899999998888999999999999999999984
No 331
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=50.08 E-value=7.2 Score=34.68 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=13.1
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
-+++++++|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468899999999985
No 332
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.01 E-value=8.9 Score=40.03 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=19.1
Q ss_pred hhhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 228 AIPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 228 ai~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
.+..++.|.| ++.-++||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4556678866 456689999999984
No 333
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=49.82 E-value=8.6 Score=39.47 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=18.1
Q ss_pred hhhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 228 AIPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 228 ai~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
.+..++.|.| ++.-++||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3445567765 556789999999973
No 334
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=49.82 E-value=8.1 Score=35.87 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.4
Q ss_pred hcCCCEEEEccCCCChhHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~ 251 (693)
..++-+++++++|||||..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCEEEECCTTSCHHHH
T ss_pred ccCCEEEEECCCCCCHHHH
Confidence 4567899999999999985
No 335
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=49.54 E-value=7.6 Score=35.28 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
+..+++.+++|||||..
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999985
No 336
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=49.47 E-value=16 Score=36.43 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=18.8
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
.+.-+.+.+|+|+|||.. +..+..++.
T Consensus 101 ~g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 356788899999999984 444444444
No 337
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=49.31 E-value=14 Score=44.61 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=27.5
Q ss_pred EEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHH
Q psy1604 239 MGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRE 285 (693)
Q Consensus 239 lv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~ 285 (693)
+|.|..|||||.+.+--+.+.+.... ...++|+|||...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~--------~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP--------FGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT--------TSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC--------CCCcEEEEecCcc
Confidence 68899999999986555555554432 2247999999753
No 338
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=49.02 E-value=10 Score=36.54 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
.+.+++.+|+|+|||..
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35799999999999985
No 339
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=49.02 E-value=9 Score=39.69 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=16.9
Q ss_pred hhhhcCCC--EEEEccCCCChhHHH
Q psy1604 230 PAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 230 ~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
..++.|.| ++.-++||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34556765 556789999999974
No 340
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=49.00 E-value=9.7 Score=35.46 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
.+.-+.+.+++|||||.. +-++..++
T Consensus 21 ~g~~v~I~G~sGsGKSTl--~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL--SNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHH--HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH--HHHHHHHH
Confidence 456788999999999973 33444443
No 341
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=48.94 E-value=38 Score=32.94 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=19.6
Q ss_pred hhhhcCCCEEEEccCCCChhHHHHH
Q psy1604 230 PAGLEGRDLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 230 ~~il~g~~vlv~a~TGsGKTl~~ll 254 (693)
.-+..|.-+++.+++|+|||..+..
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHH
Confidence 3455788899999999999986443
No 342
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=48.91 E-value=11 Score=37.74 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=20.5
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
..|+-+.+.+|+|+|||. ++-++..++
T Consensus 124 ~~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 367889999999999998 444555554
No 343
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=48.88 E-value=9.2 Score=39.59 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=17.4
Q ss_pred hhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 229 IPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 229 i~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
+..+++|.| ++.-++||||||.+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 344556755 566789999999984
No 344
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=48.85 E-value=9 Score=39.54 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=17.3
Q ss_pred hhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 229 IPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 229 i~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
+..+++|.| ++..++||||||...
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 334556765 556789999999973
No 345
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=48.43 E-value=8.4 Score=35.09 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.+..+++.+++|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456799999999999985
No 346
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=48.35 E-value=22 Score=38.45 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=48.9
Q ss_pred CCcEEEEecChHhHHHHHHHHhhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-c----ccc-C-CCCC
Q psy1604 518 EDGVIVFVSTIRNADFIACYLCET----EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-A----SRG-L-DIKG 586 (693)
Q Consensus 518 ~~kvLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-~----~~G-i-Dip~ 586 (693)
..++||.++++.-+....+.+... ++.+..++|+.+...+...+. ...+|+|+|.- + ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 778999999998888877776554 889999999986554433222 13679999842 1 222 3 5566
Q ss_pred CCEEEE
Q psy1604 587 IRHVIN 592 (693)
Q Consensus 587 v~~VI~ 592 (693)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 347
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=48.23 E-value=15 Score=34.87 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=17.4
Q ss_pred hhcCCCEEEEccCCCChhHHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ 252 (693)
+..|.-+.+.+|+|+|||..+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHH
Confidence 446788999999999999853
No 348
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=47.86 E-value=15 Score=37.69 Aligned_cols=39 Identities=21% Similarity=0.087 Sum_probs=25.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCC
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPT 283 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Pt 283 (693)
.++-+++.+++|+|||..++..+. .+...+ .+++++..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~-~~~~~g----------~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIA-AAQREG----------KTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HHHHTT----------CCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHHCC----------CeEEEEeCC
Confidence 567899999999999986444333 333322 247777653
No 349
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=47.81 E-value=12 Score=38.27 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
.+.+++.+|+|+|||+.
T Consensus 84 ~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCCEEEECSTTSCHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 46799999999999986
No 350
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=47.78 E-value=11 Score=34.98 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=16.4
Q ss_pred hcCCCEEEEccCCCChhHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~ 251 (693)
+.++-+++++|+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3677889999999999984
No 351
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=47.75 E-value=12 Score=36.33 Aligned_cols=15 Identities=33% Similarity=0.140 Sum_probs=13.0
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
-++++++||||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 368899999999985
No 352
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=47.54 E-value=95 Score=34.61 Aligned_cols=76 Identities=12% Similarity=0.150 Sum_probs=55.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH---h-cCCcEEEechhhHHHHHhcCCcCCCcee
Q psy1604 275 PEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL---E-KGCNILVATMGRLKDILDRGRISLASVR 350 (693)
Q Consensus 275 ~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~---~-~~~~IlV~Tp~~L~~~l~~~~~~l~~~~ 350 (693)
.++||.++|+..+..+.+.+... ++++..++++.........+ . ...+|+|+|- .+ ...+++.+++
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-~l-----~~GlDip~v~ 509 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-LL-----REGLDIPEVS 509 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-CC-----CTTCCCTTEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-hh-----hcCccCCCCC
Confidence 47999999999999998888775 46777788877655544432 2 3578999984 22 2356788999
Q ss_pred EEEEccchhh
Q psy1604 351 FVVLDEADRM 360 (693)
Q Consensus 351 ~lVlDEah~l 360 (693)
+||+=+++..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9999887643
No 353
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=47.54 E-value=11 Score=39.02 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=18.9
Q ss_pred hhhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 228 AIPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 228 ai~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
.+..+++|.| ++.-++||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4566677865 455689999999973
No 354
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=47.48 E-value=16 Score=34.60 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=18.7
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhcC
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLES 263 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~~ 263 (693)
++++.++.|+|||..+ +.+...+...
T Consensus 8 ~I~~~~kgGvGKTt~a-~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAM-LQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHH-HHHHHHHHHC
Confidence 6889999999999974 4444444443
No 355
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=47.43 E-value=9 Score=39.44 Aligned_cols=25 Identities=32% Similarity=0.605 Sum_probs=18.1
Q ss_pred hhhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 228 AIPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 228 ai~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
.+..++.|.| ++..++||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 3445567765 556789999999973
No 356
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=47.43 E-value=6.7 Score=36.53 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=14.6
Q ss_pred CEEEEccCCCChhHHHHH
Q psy1604 237 DLMGCAQTGSGKTAAFLI 254 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll 254 (693)
-.++.++.|||||+.+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 368999999999997544
No 357
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=47.21 E-value=27 Score=37.75 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=47.0
Q ss_pred CCcEEEEecChHhHHHHHHHHhhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-----cccc-C-CCCC
Q psy1604 518 EDGVIVFVSTIRNADFIACYLCET----EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-----ASRG-L-DIKG 586 (693)
Q Consensus 518 ~~kvLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-----~~~G-i-Dip~ 586 (693)
..++||.++++.-+....+.+... ++.+..+||+.+...+...+. ...+|+|+|.- +..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888877777654 889999999986555433222 13679999952 1222 3 5677
Q ss_pred CCEEEE
Q psy1604 587 IRHVIN 592 (693)
Q Consensus 587 v~~VI~ 592 (693)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888775
No 358
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=47.06 E-value=11 Score=39.86 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=17.7
Q ss_pred hhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 229 IPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 229 i~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
+..++.|.| ++.-++||||||++.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 445567765 556789999999984
No 359
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=46.51 E-value=34 Score=39.19 Aligned_cols=71 Identities=11% Similarity=0.170 Sum_probs=46.6
Q ss_pred CCcEEEEecChHhHHHHHHHHhhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-c----ccc-C-CCCC
Q psy1604 518 EDGVIVFVSTIRNADFIACYLCET----EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-A----SRG-L-DIKG 586 (693)
Q Consensus 518 ~~kvLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-~----~~G-i-Dip~ 586 (693)
..++||.++++..+......++.. ++.+..+||+.+...+...+. ...+|+|+|.- + ..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 778999999999888877766554 899999999986555433322 25789999942 1 222 3 4566
Q ss_pred CCEEEE
Q psy1604 587 IRHVIN 592 (693)
Q Consensus 587 v~~VI~ 592 (693)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 360
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=46.43 E-value=10 Score=39.59 Aligned_cols=25 Identities=40% Similarity=0.655 Sum_probs=18.4
Q ss_pred hhhhhhcCCC--EEEEccCCCChhHHH
Q psy1604 228 AIPAGLEGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 228 ai~~il~g~~--vlv~a~TGsGKTl~~ 252 (693)
.+..++.|.| ++..++||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4555667765 456689999999983
No 361
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=46.39 E-value=13 Score=34.20 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.+..+++.++.|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467789999999999984
No 362
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=46.27 E-value=13 Score=33.81 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.9
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
.+.+.+|.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468899999999984
No 363
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=46.27 E-value=10 Score=38.90 Aligned_cols=19 Identities=42% Similarity=0.515 Sum_probs=15.2
Q ss_pred cCCC--EEEEccCCCChhHHH
Q psy1604 234 EGRD--LMGCAQTGSGKTAAF 252 (693)
Q Consensus 234 ~g~~--vlv~a~TGsGKTl~~ 252 (693)
.|.+ ++.-++||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3665 577899999999974
No 364
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=46.13 E-value=11 Score=35.36 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=29.4
Q ss_pred CHHHHHHHHhCCCCCCCHHHHhhhhhhhcC----CCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 206 REILVKNLKKSNYTKPTPIQKYAIPAGLEG----RDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 206 ~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g----~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
...+.+.|+..++. +-.+ ...+..++++ +.+++.+|.|+|||..+ ..+.+.+
T Consensus 27 w~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 27 WRPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp SHHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 34566666654432 2222 2333333333 35899999999999863 4454443
No 365
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=45.61 E-value=8 Score=34.83 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=16.3
Q ss_pred hcCCCEEEEccCCCChhHHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ 252 (693)
..|.-+.+.+++|||||..+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 35667889999999999853
No 366
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=45.36 E-value=13 Score=35.08 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.9
Q ss_pred hcCCCEEEEccCCCChhHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~ 251 (693)
..|+-+++.+|.|+|||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4677889999999999984
No 367
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=45.32 E-value=20 Score=40.94 Aligned_cols=53 Identities=23% Similarity=0.368 Sum_probs=34.4
Q ss_pred CCCccccCCCCHHHHHHHHhC-CC--CCCCHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 196 PIESFESAGLREILVKNLKKS-NY--TKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 196 ~~~~f~~~~l~~~l~~~l~~~-g~--~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
|-.+|.+.+..+...+.|++. .+ .+|.-++... +...+.+|+.+|.|+|||+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 445788888888888888764 22 2222221111 12346799999999999985
No 368
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=45.09 E-value=16 Score=45.28 Aligned_cols=91 Identities=16% Similarity=0.120 Sum_probs=53.7
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCCh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASS 314 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~ 314 (693)
|+-+.+.+|.|||||..+ ++++....+.+ ..++++.+-.+|-... +++++-...
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~~g----------~~~~~i~~e~~~~~~~---~~~~Gv~~~------------ 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQREG----------KTCAFIDAEHALDPIY---ARKLGVDID------------ 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHHTT----------CCEEEECTTSCCCHHH---HHHTTCCGG------------
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHhcC----------CeEEEEecCCCCCHHH---HHHcCCCHH------------
Confidence 356889999999999974 44554444433 3688888876776554 455432211
Q ss_pred HHHHHHHhcCCcEEEechhhHHHHHhcC--CcCCCceeEEEEccchhhhh
Q psy1604 315 MHFNRQLEKGCNILVATMGRLKDILDRG--RISLASVRFVVLDEADRMLD 362 (693)
Q Consensus 315 ~~~~~~~~~~~~IlV~Tp~~L~~~l~~~--~~~l~~~~~lVlDEah~l~~ 362 (693)
++++.-|..--+.|.-- -+.-..+++||||.+-.+..
T Consensus 1485 -----------~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 -----------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp -----------GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred -----------HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 25566554432222110 01123578999999887653
No 369
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=44.96 E-value=11 Score=22.78 Aligned_cols=17 Identities=12% Similarity=0.335 Sum_probs=13.5
Q ss_pred CcccccCCCCCCCCCCC
Q psy1604 120 RDACFKCSEPKPEGAGG 136 (693)
Q Consensus 120 r~~c~~c~~~~~~~~~~ 136 (693)
...||.|++++|.+..+
T Consensus 6 ~~~C~nCgk~GH~ar~C 22 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQC 22 (29)
T ss_dssp CCBCTTTSCBSSCGGGC
T ss_pred CCEEEECCccccCHhHC
Confidence 45799999999987544
No 370
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=44.82 E-value=27 Score=38.10 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=19.5
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 235 GRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
..+++|.+.||||||.. +-.++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 46899999999999987 444444444
No 371
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=44.78 E-value=13 Score=33.19 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.+..+++.++.|||||..
T Consensus 7 ~g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp TSEEEEEECSTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356788999999999985
No 372
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=44.72 E-value=11 Score=34.56 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=14.0
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
+-+++++|+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999984
No 373
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=44.50 E-value=10 Score=34.04 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=13.2
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
-+++.+++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478999999999985
No 374
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=44.40 E-value=14 Score=37.94 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
..++++.+|+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 46899999999999985
No 375
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=44.34 E-value=13 Score=34.65 Aligned_cols=21 Identities=29% Similarity=0.118 Sum_probs=17.0
Q ss_pred hcCCCEEEEccCCCChhHHHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFL 253 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~l 253 (693)
..|.-+++.+++|+|||..+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHH
Confidence 356788999999999997543
No 376
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=44.10 E-value=13 Score=37.68 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=13.7
Q ss_pred CEEEEccCCCChhHHH
Q psy1604 237 DLMGCAQTGSGKTAAF 252 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ 252 (693)
-++|++|||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999853
No 377
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=44.07 E-value=16 Score=36.54 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.+.-+.+.+++|+|||..
T Consensus 99 ~g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp SCEEEEEECCTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456788999999999984
No 378
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=44.07 E-value=15 Score=34.18 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=20.9
Q ss_pred CHHHHhhhhhhhcCCCEEEEccCCCChhHH
Q psy1604 222 TPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 222 ~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~ 251 (693)
++.++... .+..+..+++.+++|||||..
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHH
Confidence 44555542 345677889999999999985
No 379
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=44.07 E-value=16 Score=33.54 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=20.9
Q ss_pred CCceeEEEEccchhh--hhCCchHHHHHHhc
Q psy1604 346 LASVRFVVLDEADRM--LDMGFLGDIQHVMQ 374 (693)
Q Consensus 346 l~~~~~lVlDEah~l--~~~~~~~~i~~i~~ 374 (693)
..+.+++|+||+..+ .+..+...+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 466789999998777 34456666666665
No 380
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.93 E-value=38 Score=34.05 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=18.4
Q ss_pred CceeEEEEccchhhhhCCchHHHHHHhcc
Q psy1604 347 ASVRFVVLDEADRMLDMGFLGDIQHVMQH 375 (693)
Q Consensus 347 ~~~~~lVlDEah~l~~~~~~~~i~~i~~~ 375 (693)
...+++|+||+|.|... ....+..++..
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~ 136 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIER 136 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhc
Confidence 45789999999988542 23445555543
No 381
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=43.87 E-value=13 Score=37.51 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.9
Q ss_pred CEEEEccCCCChhHHH
Q psy1604 237 DLMGCAQTGSGKTAAF 252 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ 252 (693)
.+++++|||||||..+
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999863
No 382
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=43.83 E-value=19 Score=38.10 Aligned_cols=51 Identities=14% Similarity=-0.111 Sum_probs=30.5
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVAC 295 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 295 (693)
..|.-+++.|++|+|||..++-.+.+.... + .++++++-- +-..|+...+.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g----------~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN-D----------DVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T----------CEEEEECSS-SCTTHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C----------CEEEEEECC-CCHHHHHHHHH
Confidence 356678999999999998644444443322 2 257777543 33344444443
No 383
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=43.67 E-value=10 Score=33.63 Aligned_cols=15 Identities=7% Similarity=-0.164 Sum_probs=13.2
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
.+++.++.|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999985
No 384
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=43.66 E-value=14 Score=33.24 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=13.1
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
-.++.+++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 568899999999984
No 385
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=43.60 E-value=14 Score=38.52 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=16.2
Q ss_pred CEEEEccCCCChhHHHHHHHHHHh
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
-++|++|||+|||..+ ..+...+
T Consensus 4 ~i~i~GptgsGKttla-~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS-IQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHH-HHHHHHH
T ss_pred EEEEECcchhhHHHHH-HHHHHHC
Confidence 3678999999999763 3344443
No 386
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=43.50 E-value=10 Score=35.23 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=17.9
Q ss_pred hhhhhcCCCEEEEccCCCChhHH
Q psy1604 229 IPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 229 i~~il~g~~vlv~a~TGsGKTl~ 251 (693)
++.+..+.-+.+.+++|||||..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHH
Confidence 34455566788999999999984
No 387
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=43.50 E-value=14 Score=32.88 Aligned_cols=27 Identities=22% Similarity=0.121 Sum_probs=20.0
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
..|.-+.+.+|.|+|||. ++-++..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 456678899999999998 454555554
No 388
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=42.99 E-value=14 Score=33.94 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.9
Q ss_pred hcCCCEEEEccCCCChhHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~ 251 (693)
..+.-+.+.+++|||||..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp SCCEEEEEECSTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3567788999999999985
No 389
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=42.96 E-value=13 Score=35.40 Aligned_cols=67 Identities=34% Similarity=0.545 Sum_probs=43.1
Q ss_pred hhhchhhhHHHHhhc--cccccceeEEEechhhhhhhc---CcccchhHHhhcccCCccccccceeecccCchhh
Q psy1604 405 LVATMGRLKDILDRG--RISLASVRFVVLDEADRMLDM---GFLGDIQHVMQHSTMPDVANRQTLMFSATFPETI 474 (693)
Q Consensus 405 ~~~~~~~l~~~l~~~--~~~~~~~~~~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l 474 (693)
++.+|+++...+... .+....+.++++||.|.+.+. ++...+..+.... .....+.+.+++|+++.+
T Consensus 153 ~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~SAT~~~~v 224 (245)
T 3dkp_A 153 LVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLAC---TSHKVRRAMFSATFAYDV 224 (245)
T ss_dssp EEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHC---CCTTCEEEEEESSCCHHH
T ss_pred EEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhc---CCCCcEEEEEeccCCHHH
Confidence 344566666666554 456778899999999999874 4444444443221 123456788999987665
No 390
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=42.65 E-value=21 Score=25.57 Aligned_cols=21 Identities=24% Similarity=0.318 Sum_probs=16.3
Q ss_pred ccCcccccCCCCCCCCCCCCC
Q psy1604 118 AKRDACFKCSEPKPEGAGGGA 138 (693)
Q Consensus 118 ~~r~~c~~c~~~~~~~~~~~~ 138 (693)
..++.||.||+.+|....+..
T Consensus 21 ~~~~~C~~Cge~GH~ardCp~ 41 (56)
T 1u6p_A 21 LDRDQCAYCKEKGHWAKDCPK 41 (56)
T ss_dssp CCTTBCSSSCCBSSCGGGCTT
T ss_pred CCCCcceeCCCCCcccccCcC
Confidence 346789999999999866543
No 391
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=42.62 E-value=44 Score=32.88 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=28.3
Q ss_pred CccccCCCCHHHHHHHHhCCCCCCCHHHHhhhhhhhcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 198 ESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 198 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.+|.++--.+...+.+...=- . -...++++.+|+|+|||.. +..+.+.+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~-~------------~~~~~~ll~G~~G~GKt~l-a~~l~~~l 62 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVE-R------------KNIPHLLFSGPPGTGKTAT-AIALARDL 62 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTT-T------------TCCCCEEEESSSSSSHHHH-HHHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHh-C------------CCCCeEEEECcCCcCHHHH-HHHHHHHh
Confidence 345555446666666654210 0 1123599999999999986 33344433
No 392
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=42.61 E-value=16 Score=33.99 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=22.5
Q ss_pred eeEEEEccchhhhhCC--chHHHHHHhccCCCCCCCCcceEEeecc
Q psy1604 349 VRFVVLDEADRMLDMG--FLGDIQHVMQHSTMPDVANRQTLMFSAT 392 (693)
Q Consensus 349 ~~~lVlDEah~l~~~~--~~~~i~~i~~~~~~~~~~~~q~lllSAT 392 (693)
-.+|||||||.+.... ....+. ++...........++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~r-ll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPE-NVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCH-HHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHH-HHHHHHhcCcCCeEEEEECCC
Confidence 5689999999985321 111111 222222222335577776665
No 393
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=42.32 E-value=9.4 Score=37.05 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
.+.+++.+|+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 45799999999999986
No 394
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=42.09 E-value=9 Score=34.69 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ 252 (693)
.+..+++.++.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456889999999999853
No 395
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=42.04 E-value=17 Score=31.79 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=13.0
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468899999999985
No 396
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=41.90 E-value=16 Score=33.91 Aligned_cols=25 Identities=20% Similarity=0.065 Sum_probs=17.3
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
.+.-+.+.+++|||||.. +-++..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl--~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL--AQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHH--HHHHHHH
T ss_pred CcEEEEEECCCCCCHHHH--HHHHHHH
Confidence 344577899999999984 3344443
No 397
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=41.68 E-value=13 Score=35.45 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=19.4
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|.|||||. ++-++.-+
T Consensus 29 ~~Ge~~~iiG~nGsGKST--Ll~~l~Gl 54 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST--MLNIIGCL 54 (235)
T ss_dssp CTTCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHH--HHHHHhcC
Confidence 367788999999999998 44444433
No 398
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=41.41 E-value=18 Score=34.99 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=16.9
Q ss_pred hcCCCEEEEccCCCChhHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~ 251 (693)
+.++.+++.+++|||||..
T Consensus 46 l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HTTCCEEEECSTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3488999999999999985
No 399
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=41.38 E-value=30 Score=29.15 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=29.8
Q ss_pred CcEEEEe-cChHhHHHHHHHHhhCCCceEEecCCCC
Q psy1604 519 DGVIVFV-STIRNADFIACYLCETEIATTSIHGSRL 553 (693)
Q Consensus 519 ~kvLVF~-~s~~~a~~l~~~L~~~~~~v~~lhg~~~ 553 (693)
.+++++| .+-..+...+..|+..|+++..+.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 6899999 4767788889999999999999999864
No 400
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=41.21 E-value=1.5e+02 Score=31.44 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.4
Q ss_pred hhhhhcCCCEEEEccCCCChhHH
Q psy1604 229 IPAGLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 229 i~~il~g~~vlv~a~TGsGKTl~ 251 (693)
+..+.+|+.+++.++.|+|||..
T Consensus 145 L~pi~kGq~~~i~G~sGvGKTtL 167 (473)
T 1sky_E 145 LAPYIKGGKIGLFGGAGVGKTVL 167 (473)
T ss_dssp HSCEETTCEEEEECCSSSCHHHH
T ss_pred HhhhccCCEEEEECCCCCCccHH
Confidence 44556889999999999999975
No 401
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=41.18 E-value=11 Score=33.10 Aligned_cols=30 Identities=13% Similarity=0.136 Sum_probs=17.5
Q ss_pred CCcceecCCCCCcccCcccccCCCCCCCCCCC
Q psy1604 105 PGDWMCSCGASNFAKRDACFKCSEPKPEGAGG 136 (693)
Q Consensus 105 ~gdw~~~c~~~n~~~r~~c~~c~~~~~~~~~~ 136 (693)
.|+|+-.|..... ...|++|++.+|....+
T Consensus 106 ~GH~a~~C~~~~~--~~~C~~Cg~~GH~~r~C 135 (148)
T 3ts2_A 106 LDHHAKECKLPPQ--PKKCHFCQSINHMVASC 135 (148)
T ss_dssp SSCCGGGCCSCCC--CCCCTTTCCSSCCGGGC
T ss_pred ccchhhhCCCCCC--CCcccccCCcCCEeccC
Confidence 3565555554322 34688888887775443
No 402
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=41.02 E-value=16 Score=36.10 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=14.3
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
..+++.+|+|+|||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3689999999999985
No 403
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=41.00 E-value=12 Score=33.24 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.9
Q ss_pred CCEEEEccCCCChhHHH
Q psy1604 236 RDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ 252 (693)
+++++.++.|||||.+.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999863
No 404
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=40.89 E-value=28 Score=39.06 Aligned_cols=69 Identities=4% Similarity=0.016 Sum_probs=45.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEE
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVV 353 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lV 353 (693)
+.++||.+|++.-+..+++.+.+. ++++..++|...............+|+|||.- +. ..+++. +++||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv-----~e-~GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTDI-----SE-MGANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECGG-----GG-TTCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECch-----hh-cceeeC-CcEEE
Confidence 457999999999999988888765 56788888742222121212346789999952 22 245666 77766
No 405
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=40.86 E-value=11 Score=34.21 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=14.7
Q ss_pred CCCEEEEccCCCChhHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ 252 (693)
+..+++.+++|||||..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345789999999999863
No 406
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=40.70 E-value=15 Score=40.58 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=14.1
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
++++.+|+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999984
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=40.64 E-value=29 Score=34.12 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.4
Q ss_pred hhcCCCEEEEccCCCChhHHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ 252 (693)
+..|.-+++.+++|+|||...
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHH
Confidence 446788999999999999853
No 408
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=40.04 E-value=22 Score=28.51 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=31.4
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSR 552 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~ 552 (693)
...+++++|.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 456799999998889999999999999888898884
No 409
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=39.89 E-value=1.3e+02 Score=23.44 Aligned_cols=68 Identities=9% Similarity=0.094 Sum_probs=49.4
Q ss_pred HHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEe
Q psy1604 508 KLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVAT 575 (693)
Q Consensus 508 ~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT 575 (693)
....+..+..-.++||..+.+.....+.+.++..|++++.+-.+.+..+-++.-+...+.-+.|--.|
T Consensus 41 emkklaeeknfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvt 108 (134)
T 2lci_A 41 EMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVT 108 (134)
T ss_dssp HHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecC
Confidence 33444455777899999999999999999999999999999888777765554444444444444333
No 410
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=39.83 E-value=18 Score=36.52 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.5
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
..+++.+|+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5799999999999985
No 411
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=39.66 E-value=71 Score=32.68 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=51.1
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhC----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC-----ccc-ccCCCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCET----EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA-----VAS-RGLDIKG 586 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~-----v~~-~GiDip~ 586 (693)
...++||.++++..+..+++.++.. +..+..++|+.....+ ++.+..+..+|+|+|. .+. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 5678999999999998888877653 5667777777654443 4455667889999994 222 2355666
Q ss_pred CCEEEE
Q psy1604 587 IRHVIN 592 (693)
Q Consensus 587 v~~VI~ 592 (693)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777664
No 412
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.53 E-value=47 Score=24.23 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=18.4
Q ss_pred CCCcceecCCCCCcccCcccccCCCCCCCCCCC
Q psy1604 104 KPGDWMCSCGASNFAKRDACFKCSEPKPEGAGG 136 (693)
Q Consensus 104 ~~gdw~~~c~~~n~~~r~~c~~c~~~~~~~~~~ 136 (693)
+.|+|.-.|.... ....||+|++++|.+..+
T Consensus 15 ~~GH~a~~C~~~~--~~~~C~~Cg~~GH~ar~C 45 (63)
T 2cqf_A 15 GLDHHAKECKLPP--QPKKCHFCQSISHMVASC 45 (63)
T ss_dssp CSSSCTTTCCSCC--CSSCCTTTCCSSSCTTTC
T ss_pred CCCcChhhCCCCC--CCCccCCcCCcCCccCcC
Confidence 3456555554322 345788888888876544
No 413
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=39.53 E-value=25 Score=35.28 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=12.9
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
-+++.++.|||||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 368899999999984
No 414
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=39.50 E-value=10 Score=35.86 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=12.8
Q ss_pred hhcCCCEEEEccCCCChhHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~ 251 (693)
+..|+-+.+.+|+|+|||..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 44677889999999999974
No 415
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=39.10 E-value=39 Score=33.87 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=17.2
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
-+.+.+++|||||.. +-++..++.
T Consensus 94 iigI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhc
Confidence 367889999999984 445555554
No 416
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=39.09 E-value=15 Score=35.04 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=19.5
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|.|||||. ++-++.-+
T Consensus 29 ~~Ge~~~i~G~nGsGKST--Ll~~l~Gl 54 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSS--LLSALLAE 54 (237)
T ss_dssp CTTCEEEEECSTTSSHHH--HHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 467889999999999998 44444333
No 417
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=39.00 E-value=20 Score=36.70 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.4
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
+.-+.+.+++|+|||..
T Consensus 157 g~vi~lvG~nGsGKTTl 173 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTS 173 (359)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 45678999999999984
No 418
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=38.96 E-value=23 Score=31.87 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=17.1
Q ss_pred CEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 237 DLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
-+.+.++.|||||.. +..++..+..
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhHh
Confidence 467889999999985 3444444433
No 419
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=38.70 E-value=15 Score=33.46 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.+..+++.+++|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456789999999999985
No 420
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.62 E-value=22 Score=38.38 Aligned_cols=16 Identities=44% Similarity=0.482 Sum_probs=14.7
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
+.+++.+|+|+|||..
T Consensus 78 ~~lLL~GppGtGKTtl 93 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTA 93 (516)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6899999999999986
No 421
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=38.50 E-value=22 Score=36.76 Aligned_cols=20 Identities=25% Similarity=0.101 Sum_probs=17.6
Q ss_pred hhcCCCEEEEccCCCChhHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~ 251 (693)
+-.|+.+.+.+++|+|||..
T Consensus 171 i~rGQr~~IvG~sG~GKTtL 190 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTML 190 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHH
T ss_pred ecCCcEEEEecCCCCChhHH
Confidence 34789999999999999985
No 422
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=38.43 E-value=13 Score=33.74 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=14.5
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
+.-+++.++.|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44688999999999985
No 423
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=38.36 E-value=14 Score=33.85 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.+..+++.++.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456789999999999985
No 424
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=38.12 E-value=21 Score=28.76 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=31.2
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSR 552 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~ 552 (693)
...++++||.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 456799999998888999999999999988898883
No 425
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=38.07 E-value=18 Score=34.01 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=20.0
Q ss_pred hhcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
+..|.-+.+.+|.|+|||. ++-++.-+
T Consensus 32 i~~Ge~~~iiG~NGsGKST--Llk~l~Gl 58 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTT--LLKTISTY 58 (214)
T ss_dssp EETTCCEEEECCTTSSHHH--HHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 3467889999999999998 44444433
No 426
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=38.01 E-value=16 Score=32.77 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=13.6
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
.+++.++.|||||..
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 688999999999985
No 427
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=37.97 E-value=14 Score=33.97 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=14.2
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
..++++++.|||||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999985
No 428
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=37.86 E-value=34 Score=36.15 Aligned_cols=67 Identities=10% Similarity=0.055 Sum_probs=45.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEE
Q psy1604 276 EVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVV 353 (693)
Q Consensus 276 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lV 353 (693)
++||.+|++.-+.++++.+.+. ++.+..+++...............+|+|||. .+. ..+++.. ++||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~-~GiDip~-~~VI 256 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISE-MGANFRA-GRVI 256 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGG-SSCCCCC-SEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHH-hCcCCCC-CEEE
Confidence 6999999999999988888764 4667777776543322222234689999995 222 2456666 6665
No 429
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=37.34 E-value=23 Score=35.76 Aligned_cols=18 Identities=33% Similarity=0.326 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.+.-+.+.+|+|+|||..
T Consensus 128 ~g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SSEEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356688999999999984
No 430
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=37.27 E-value=26 Score=27.64 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=30.5
Q ss_pred CcEEEEecChHhHHHHHHHHhhCCCceEEecCCCC
Q psy1604 519 DGVIVFVSTIRNADFIACYLCETEIATTSIHGSRL 553 (693)
Q Consensus 519 ~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~~ 553 (693)
.+++++|.+-..+...+..|.+.|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888999999999998878888864
No 431
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=37.22 E-value=15 Score=33.33 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.4
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
.-+++.+++|+|||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3468899999999984
No 432
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=37.21 E-value=11 Score=38.25 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
..++++.+|+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999985
No 433
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=36.77 E-value=30 Score=45.23 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=31.7
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhh----hhhhhcCCCEEEEccCCCChhHHHH
Q psy1604 205 LREILVKNLKKSNYTKPTPIQKYA----IPAGLEGRDLMGCAQTGSGKTAAFL 253 (693)
Q Consensus 205 l~~~l~~~l~~~g~~~p~~~Q~~a----i~~il~g~~vlv~a~TGsGKTl~~l 253 (693)
+.+.+.+.+.+.++ .+.+.+..- ...+..++.+++.+|||||||.++-
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34556666666676 456655332 2333457889999999999998643
No 434
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=36.56 E-value=16 Score=33.63 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.5
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
+..+++.+++|||||..
T Consensus 20 ~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34688999999999986
No 435
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=36.47 E-value=18 Score=34.40 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=19.6
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|.|+|||. ++-++.-+
T Consensus 32 ~~Ge~~~i~G~nGsGKST--Ll~~l~Gl 57 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTS--LLMMIMGE 57 (229)
T ss_dssp ETTCEEEEECCTTSSHHH--HHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhCC
Confidence 467889999999999998 44444433
No 436
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=36.36 E-value=15 Score=36.36 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=14.4
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
+.-+++++++|||||..
T Consensus 33 ~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34688999999999985
No 437
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=36.30 E-value=18 Score=35.14 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=19.6
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|.|+|||. ++-++.-+
T Consensus 44 ~~Ge~~~i~G~nGsGKST--Ll~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKST--IAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHhcc
Confidence 467889999999999998 44444333
No 438
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.23 E-value=15 Score=26.16 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=14.4
Q ss_pred CcccccCCCCCCCCCCCC
Q psy1604 120 RDACFKCSEPKPEGAGGG 137 (693)
Q Consensus 120 r~~c~~c~~~~~~~~~~~ 137 (693)
...||+||+++|....+.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp 24 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCP 24 (55)
T ss_dssp SCCCTTTCCTTSCGGGCS
T ss_pred CCccccCCCcCcccccCC
Confidence 457999999999876653
No 439
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.08 E-value=50 Score=43.74 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=43.9
Q ss_pred CCHHHHHHHHhCCCCCCCHHHHhhh----hhhhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEE
Q psy1604 205 LREILVKNLKKSNYTKPTPIQKYAI----PAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIIC 280 (693)
Q Consensus 205 l~~~l~~~l~~~g~~~p~~~Q~~ai----~~il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil 280 (693)
|.+.+.+.+.+.|+ .+.+.|..=+ ..+...+.+++.+|||||||.++- +|...+..-. ......-++
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~--~L~~al~~l~------~~~~~~~~i 943 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE--VYLEAIEQVD------NIKSEAHVM 943 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH--HHHHHHTTTT------TCEEEEEEE
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH--HHHHHHHHhh------CCCceEEEE
Confidence 34556666667777 4566554322 233356789999999999999743 3333332211 111245667
Q ss_pred cCCHHHHHHH
Q psy1604 281 APTRELVMQI 290 (693)
Q Consensus 281 ~Ptr~La~Q~ 290 (693)
-|.-.-..|.
T Consensus 944 NPKait~~eL 953 (3245)
T 3vkg_A 944 DPKAITKDQL 953 (3245)
T ss_dssp CTTTSCHHHH
T ss_pred CCCCCchhhh
Confidence 7764444443
No 440
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=36.04 E-value=18 Score=32.15 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=13.9
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
+.+++.++.|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3588999999999985
No 441
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=35.93 E-value=24 Score=25.64 Aligned_cols=33 Identities=18% Similarity=0.455 Sum_probs=20.9
Q ss_pred CCCcceecCCCCCcc--cCcccccCCCCCCCCCCC
Q psy1604 104 KPGDWMCSCGASNFA--KRDACFKCSEPKPEGAGG 136 (693)
Q Consensus 104 ~~gdw~~~c~~~n~~--~r~~c~~c~~~~~~~~~~ 136 (693)
+.|+|.-.|...... ....||+|++++|.+..+
T Consensus 12 ~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~ar~C 46 (61)
T 2ihx_A 12 SPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQC 46 (61)
T ss_dssp CBTCCGGGCTTTTSSSCCCSBCTTTCCBSSCGGGC
T ss_pred CCCeehhhCcCCcCCCCCCCeeCCCCCCCCCcCCC
Confidence 446776666554321 235699999999887544
No 442
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=35.84 E-value=19 Score=32.46 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=14.3
Q ss_pred CCEEEEccCCCChhHHH
Q psy1604 236 RDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ 252 (693)
..+++.+++|||||..+
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35889999999999863
No 443
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=35.83 E-value=24 Score=37.82 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.1
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
+.-+++.+++|+|||..
T Consensus 293 GeVI~LVGpNGSGKTTL 309 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTT 309 (503)
T ss_dssp TEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCcccHHHH
Confidence 34578999999999984
No 444
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=35.81 E-value=18 Score=34.79 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=19.6
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|.|+|||. ++-++.-+
T Consensus 33 ~~Ge~~~i~G~nGsGKST--Ll~~l~Gl 58 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKST--LTKLIQRF 58 (247)
T ss_dssp ETTCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 467888999999999998 44444333
No 445
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=35.69 E-value=1.7e+02 Score=23.55 Aligned_cols=47 Identities=9% Similarity=0.096 Sum_probs=34.6
Q ss_pred CCCcEEEEec------ChHhHHHHHHHHhhCCCceEEecCCCCHHHHHHHHHH
Q psy1604 517 DEDGVIVFVS------TIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHD 563 (693)
Q Consensus 517 ~~~kvLVF~~------s~~~a~~l~~~L~~~~~~v~~lhg~~~~~~R~~~~~~ 563 (693)
...+++||.. ....|....++|.+.++....+.=......++.+.+.
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 3568999998 4889999999999999887766544445555554443
No 446
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=35.66 E-value=23 Score=31.85 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=13.2
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
.+++.++.|||||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999985
No 447
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=35.64 E-value=23 Score=31.80 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.+..+++.++.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456688999999999985
No 448
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=35.49 E-value=18 Score=34.16 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=19.1
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|.|+|||. ++-++.-+
T Consensus 28 ~~Ge~~~iiG~nGsGKST--Ll~~l~Gl 53 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKST--LLYILGLL 53 (224)
T ss_dssp ETTCEEEEEECTTSCHHH--HHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 367788899999999998 44444333
No 449
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=35.47 E-value=19 Score=35.42 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=19.1
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHH 259 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~ 259 (693)
..|.-+.+.+|.|||||. ++-++.-
T Consensus 32 ~~Ge~~~iiGpnGsGKST--Ll~~l~G 56 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKST--LFQNFNG 56 (275)
T ss_dssp ETTSEEEEECCTTSSHHH--HHHHHTT
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHHc
Confidence 467788999999999998 4444433
No 450
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=35.30 E-value=8.5 Score=43.42 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=46.6
Q ss_pred CCcEEEEecChHhHHHH-HHHHhhCC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC-ccc-----------cc
Q psy1604 518 EDGVIVFVSTIRNADFI-ACYLCETE---IATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA-VAS-----------RG 581 (693)
Q Consensus 518 ~~kvLVF~~s~~~a~~l-~~~L~~~~---~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~-v~~-----------~G 581 (693)
..++||.++++.-+... ++.|++.. +.+..++|+.+..++...+. +..+|+|+|. .+. ..
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~ 131 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 131 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccc
Confidence 37899999999988888 77776543 78999999876554433332 4688999994 222 23
Q ss_pred CCCCCCCEEEE
Q psy1604 582 LDIKGIRHVIN 592 (693)
Q Consensus 582 iDip~v~~VI~ 592 (693)
+.+..+++||.
T Consensus 132 ~~~~~~~lvVi 142 (699)
T 4gl2_A 132 VQLSDFSLIII 142 (699)
T ss_dssp CCGGGCSEEEE
T ss_pred eecccCcEEEE
Confidence 46677888774
No 451
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=35.27 E-value=26 Score=37.30 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=19.2
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
...++++.+|+|+|||..+ -.+.+.+.
T Consensus 200 ~~~~~LL~G~pG~GKT~la-~~la~~l~ 226 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIA-EGLAQQII 226 (468)
T ss_dssp SSCEEEEESCTTTTTHHHH-HHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH-HHHHHHHH
Confidence 3468999999999999863 33444443
No 452
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=35.20 E-value=16 Score=33.35 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.+..+++.+++|||||..
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 345688999999999985
No 453
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=35.13 E-value=15 Score=39.38 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
..+.+++.+|+|+|||+.
T Consensus 237 ~~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CCCEEEEECSTTSSHHHH
T ss_pred CCCcEEEECcCCCCHHHH
Confidence 346799999999999985
No 454
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=35.12 E-value=16 Score=33.72 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.+.-+++.++.|||||..
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 355688999999999985
No 455
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=35.05 E-value=17 Score=33.81 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=13.6
Q ss_pred CEEEEccCCCChhHHH
Q psy1604 237 DLMGCAQTGSGKTAAF 252 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ 252 (693)
.+++.++.|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999863
No 456
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=34.92 E-value=85 Score=35.84 Aligned_cols=71 Identities=11% Similarity=0.008 Sum_probs=51.9
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCc-c------------
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAV-A------------ 578 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v-~------------ 578 (693)
..+..++|.++++.-|...++.+.. .++.+.++.|+++..+|.... ..+|+++|+- +
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~ 195 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLY 195 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcc
Confidence 3456899999999999888776643 589999999999887665542 3689999961 1
Q ss_pred cccCCCCCCCEEEE
Q psy1604 579 SRGLDIKGIRHVIN 592 (693)
Q Consensus 579 ~~GiDip~v~~VI~ 592 (693)
...++...+.++|.
T Consensus 196 ~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 196 KEQMVQRPLHFAVI 209 (844)
T ss_dssp GGGCCCCCCCEEEE
T ss_pred hhhhcccCCCEEEE
Confidence 12356677777663
No 457
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=34.90 E-value=26 Score=28.41 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=30.7
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCCCceEEecCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSR 552 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~ 552 (693)
...+++++|.+-..+...+..|.+.|+.+..+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 456789999988888889999999999988888874
No 458
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=34.70 E-value=18 Score=34.75 Aligned_cols=26 Identities=12% Similarity=0.325 Sum_probs=19.6
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|.|||||. ++-++.-+
T Consensus 26 ~~Ge~~~i~G~nGsGKST--Ll~~l~Gl 51 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKST--IFSLLERF 51 (243)
T ss_dssp CTTEEEEEECCTTSSHHH--HHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 467788999999999998 44444443
No 459
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=34.63 E-value=18 Score=33.76 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCChhHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ 252 (693)
+..+++.+++|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356889999999999863
No 460
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=34.49 E-value=13 Score=33.59 Aligned_cols=15 Identities=33% Similarity=0.231 Sum_probs=12.6
Q ss_pred CEEEEccCCCChhHH
Q psy1604 237 DLMGCAQTGSGKTAA 251 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~ 251 (693)
-+.+.+++|||||..
T Consensus 4 ~v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEEESCHHHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999984
No 461
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=34.48 E-value=16 Score=33.91 Aligned_cols=16 Identities=25% Similarity=0.274 Sum_probs=13.7
Q ss_pred CEEEEccCCCChhHHH
Q psy1604 237 DLMGCAQTGSGKTAAF 252 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ 252 (693)
.+++.++.|||||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999863
No 462
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=34.30 E-value=9.9 Score=38.07 Aligned_cols=26 Identities=19% Similarity=0.558 Sum_probs=19.9
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|+|+|||. ++-++..+
T Consensus 78 ~~Ge~vaivG~sGsGKST--Ll~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKST--ILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHH--HHHHHTTS
T ss_pred cCCCEEEEECCCCchHHH--HHHHHHcC
Confidence 467889999999999998 44455444
No 463
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=34.19 E-value=26 Score=38.68 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=21.2
Q ss_pred hhhcCCCEEEEccCCCChhHHHHHHHHHHhh
Q psy1604 231 AGLEGRDLMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 231 ~il~g~~vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
.+..++.+++.+|+|+|||.. +-++..++
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtl--ar~ia~~l 84 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSML--GQAMAELL 84 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHH--HHHHHHTS
T ss_pred cccCCCEEEEEeCCCCCHHHH--HHHHhccC
Confidence 345778999999999999985 33444443
No 464
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=34.14 E-value=21 Score=33.56 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCChhHHHH
Q psy1604 234 EGRDLMGCAQTGSGKTAAFL 253 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~~l 253 (693)
+.+-+++.+|+||||+..+-
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 44567889999999988643
No 465
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=34.13 E-value=20 Score=34.71 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=19.1
Q ss_pred hhcCCCEEEEccCCCChhHHHHHHHHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAFLIPIMH 258 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ll~il~ 258 (693)
+..|.-+.+.+|.|+|||. ++-++.
T Consensus 30 i~~Ge~~~liG~nGsGKST--Llk~l~ 54 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKST--LINVIT 54 (257)
T ss_dssp EETTCEEEEECSTTSSHHH--HHHHHT
T ss_pred EeCCCEEEEECCCCCCHHH--HHHHHh
Confidence 3467788999999999998 444443
No 466
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=33.97 E-value=18 Score=32.67 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.8
Q ss_pred CEEEEccCCCChhHHH
Q psy1604 237 DLMGCAQTGSGKTAAF 252 (693)
Q Consensus 237 ~vlv~a~TGsGKTl~~ 252 (693)
.+++.+++|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999863
No 467
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=33.97 E-value=20 Score=34.96 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=19.5
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|.|||||. ++-++.-+
T Consensus 35 ~~Ge~~~liG~nGsGKST--Ll~~l~Gl 60 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKST--LLRLLTGY 60 (266)
T ss_dssp ETTCEEEEECCTTSCHHH--HHHHHTSS
T ss_pred cCCCEEEEECCCCCcHHH--HHHHHhcC
Confidence 467888999999999998 44444433
No 468
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=33.94 E-value=56 Score=36.13 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=46.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHHhcCCcEEEechhhHHHHHhcCCcCCCceeEEE
Q psy1604 274 QPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVV 353 (693)
Q Consensus 274 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~~~~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lV 353 (693)
..++||.++|+.-+..+++.+.+. ++++..+++...............+|+|||. .+.. .+++. +++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~VI 423 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGRVI 423 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceEEE
Confidence 347999999999999999988875 4677778775333222222344689999996 2222 34554 66663
No 469
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=33.88 E-value=97 Score=30.01 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=58.9
Q ss_pred CCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcCCCeeEEEEeCCCChHHHHHHH--
Q psy1604 244 TGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQL-- 321 (693)
Q Consensus 244 TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~~-- 321 (693)
..++|... +.-++..+...+ .++||.+.++..+..+.+.+.+.. ++.+..++|+.+.......+
T Consensus 93 ~~s~K~~~-L~~ll~~~~~~~----------~kvlIFs~~~~~~~~l~~~L~~~~---g~~~~~l~G~~~~~~R~~~i~~ 158 (271)
T 1z5z_A 93 RRSGKMIR-TMEIIEEALDEG----------DKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISK 158 (271)
T ss_dssp TTCHHHHH-HHHHHHHHHHTT----------CCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHHHHHHHHHH
T ss_pred ccCHHHHH-HHHHHHHHHhCC----------CeEEEEeccHHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHH
Confidence 45788765 566666654432 368999999998888888887631 34566778887755443333
Q ss_pred -hc--CCcEEEechhhHHHHHhcCCcCCCceeEEEEccc
Q psy1604 322 -EK--GCNILVATMGRLKDILDRGRISLASVRFVVLDEA 357 (693)
Q Consensus 322 -~~--~~~IlV~Tp~~L~~~l~~~~~~l~~~~~lVlDEa 357 (693)
.. ...|++.+.... ...+++...++||+=+.
T Consensus 159 F~~~~~~~v~L~st~~~-----g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 159 FQNNPSVKFIVLSVKAG-----GFGINLTSANRVIHFDR 192 (271)
T ss_dssp HHHCTTCCEEEEECCTT-----CCCCCCTTCSEEEECSC
T ss_pred hcCCCCCCEEEEehhhh-----cCCcCcccCCEEEEECC
Confidence 22 345455444333 22467777777776443
No 470
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=33.84 E-value=18 Score=38.13 Aligned_cols=17 Identities=29% Similarity=0.476 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
.+++++.+|+|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 46899999999999985
No 471
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=33.82 E-value=21 Score=34.21 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=19.4
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|.|+|||. ++-++.-+
T Consensus 30 ~~Ge~~~l~G~nGsGKST--Ll~~l~Gl 55 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTT--TLSAIAGL 55 (240)
T ss_dssp ETTCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhCC
Confidence 367788999999999998 44444333
No 472
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=33.81 E-value=18 Score=34.09 Aligned_cols=17 Identities=24% Similarity=0.133 Sum_probs=14.7
Q ss_pred CCCEEEEccCCCChhHH
Q psy1604 235 GRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~ 251 (693)
...+++.+++|||||..
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35689999999999985
No 473
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=33.70 E-value=29 Score=31.53 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=12.4
Q ss_pred EEEEccCCCChhHH
Q psy1604 238 LMGCAQTGSGKTAA 251 (693)
Q Consensus 238 vlv~a~TGsGKTl~ 251 (693)
++|.+++|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 68999999999974
No 474
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=33.66 E-value=72 Score=24.29 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=28.7
Q ss_pred cCCCcEEEEecChHhHHHHHHHHhhCCCc-eEEecCCC
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLCETEIA-TTSIHGSR 552 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~~ 552 (693)
....+++++|.+-..+...+..|.+.|+. +..+ |++
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 45677999999988888999999999985 5555 664
No 475
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=33.66 E-value=28 Score=32.90 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCChhHHH
Q psy1604 235 GRDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 235 g~~vlv~a~TGsGKTl~~ 252 (693)
...+++.+++|||||...
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999863
No 476
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=33.26 E-value=29 Score=23.87 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=7.4
Q ss_pred cccccCCCCCCCC
Q psy1604 121 DACFKCSEPKPEG 133 (693)
Q Consensus 121 ~~c~~c~~~~~~~ 133 (693)
..||+|++++|..
T Consensus 28 ~~C~~Cg~~GH~~ 40 (49)
T 2ec7_A 28 QGCWKCGKTGHVM 40 (49)
T ss_dssp CSCSSSCCSSCCG
T ss_pred CeeCcCCCcCCcc
Confidence 3566666665554
No 477
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=33.18 E-value=22 Score=34.47 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=19.4
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|.|+|||. ++-++.-+
T Consensus 39 ~~Gei~~l~G~NGsGKST--Llk~l~Gl 64 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTT--TLRIISTL 64 (256)
T ss_dssp CTTCEEEEECCTTSSHHH--HHHHHTTS
T ss_pred cCCcEEEEECCCCCCHHH--HHHHHhcC
Confidence 367788999999999998 44444333
No 478
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=33.14 E-value=22 Score=34.81 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=20.0
Q ss_pred hhcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
+..|.-+.+.+|.|+|||. ++-++.-+
T Consensus 42 i~~Ge~~~i~G~nGsGKST--Llk~l~Gl 68 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKST--VAALLQNL 68 (271)
T ss_dssp ECTTCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 3467888999999999998 44455433
No 479
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=33.11 E-value=22 Score=34.63 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=19.6
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|.|+|||. ++-++.-+
T Consensus 48 ~~Gei~~liG~NGsGKST--Llk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKST--FLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHH--HHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHH--HHHHHHcC
Confidence 467788999999999998 44455433
No 480
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=33.11 E-value=27 Score=32.62 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.8
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
..+.+.+++|||||..
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578999999999985
No 481
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=33.08 E-value=22 Score=34.58 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=19.3
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|.|+|||. ++-++.-+
T Consensus 30 ~~Ge~~~liG~nGsGKST--Llk~l~Gl 55 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKST--FLRCINFL 55 (262)
T ss_dssp CTTCEEEEECCTTSSHHH--HHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 367788899999999998 44444433
No 482
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=33.04 E-value=27 Score=31.52 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCChhHH
Q psy1604 234 EGRDLMGCAQTGSGKTAA 251 (693)
Q Consensus 234 ~g~~vlv~a~TGsGKTl~ 251 (693)
.+..+++.++.|||||..
T Consensus 12 ~~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456788999999999985
No 483
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=33.02 E-value=31 Score=32.17 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.7
Q ss_pred CCEEEEccCCCChhHHH
Q psy1604 236 RDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ 252 (693)
..+++.+++|||||...
T Consensus 6 ~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 6 LKVMISGAPASGKGTQC 22 (222)
T ss_dssp CCEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56899999999999863
No 484
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=32.84 E-value=85 Score=35.82 Aligned_cols=71 Identities=10% Similarity=-0.105 Sum_probs=51.1
Q ss_pred cCCCcEEEEecChHhHHHHHHHHh----hCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeCcc------ccc----
Q psy1604 516 KDEDGVIVFVSTIRNADFIACYLC----ETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVA------SRG---- 581 (693)
Q Consensus 516 ~~~~kvLVF~~s~~~a~~l~~~L~----~~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~v~------~~G---- 581 (693)
..+.+++|.++|+.-|...++.+. ..++.+..+.|+++...|.... .++|+|+|+-- ..+
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~ 186 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFS 186 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhcc
Confidence 345679999999999888777654 3589999999999876655433 37899999621 222
Q ss_pred ---CCCCCCCEEEE
Q psy1604 582 ---LDIKGIRHVIN 592 (693)
Q Consensus 582 ---iDip~v~~VI~ 592 (693)
++...+.++|.
T Consensus 187 ~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 187 PEERVQRKLHYALV 200 (853)
T ss_dssp GGGCCCCSCCEEEE
T ss_pred HhHhcccCCcEEEE
Confidence 45567777764
No 485
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=32.75 E-value=22 Score=34.64 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=19.9
Q ss_pred hhcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
+..|.-+.+.+|.|+|||. ++-++.-+
T Consensus 43 i~~Ge~~~l~G~NGsGKST--Llk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKST--LSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHH--HHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhCC
Confidence 3467888999999999998 44444433
No 486
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=32.62 E-value=25 Score=36.08 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.5
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
.-.++.++||+|||..
T Consensus 26 gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3468999999999985
No 487
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=32.55 E-value=1.1e+02 Score=28.85 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhccCCCcEEEEecChHhHHHHHHHHhhCCCc-eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC
Q psy1604 504 QKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIA-TTSIHGSRLQSQREQAIHDFKTKKMKVLVATA 576 (693)
Q Consensus 504 ~k~~~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~ 576 (693)
.|-.....++... ..++||+++++..+..+.+.+.+.+.. +..++|+.. ...+|+|+|.
T Consensus 120 GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 120 GKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp THHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 3444433333332 678999999999999999998887888 888888753 2457888883
No 488
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=32.53 E-value=22 Score=34.25 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=18.5
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMH 258 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~ 258 (693)
..|.-+.+.+|.|+|||. ++-++.
T Consensus 24 ~~Ge~~~liG~NGsGKST--Llk~l~ 47 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKST--LLARMA 47 (249)
T ss_dssp ETTCEEEEECCTTSSHHH--HHHHHT
T ss_pred cCCCEEEEECCCCCcHHH--HHHHHh
Confidence 367788999999999998 444443
No 489
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=32.45 E-value=25 Score=35.24 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=19.6
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHhhc
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHLLE 262 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l~~ 262 (693)
..+.-+.+.+++|||||.. +-++..++.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL--~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTT--ARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHH--HHHHHhhcc
Confidence 4456678899999999984 444544443
No 490
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=32.41 E-value=22 Score=34.20 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=19.0
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHH
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHH 259 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~ 259 (693)
..|.-+.+.+|.|+|||. ++-++.-
T Consensus 27 ~~Ge~~~l~G~nGsGKST--Llk~l~G 51 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKST--LGKILAG 51 (250)
T ss_dssp ETTCEEEEECSTTSSHHH--HHHHHHT
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHhC
Confidence 467788999999999998 4444443
No 491
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=32.40 E-value=26 Score=37.62 Aligned_cols=52 Identities=13% Similarity=0.007 Sum_probs=30.7
Q ss_pred hhcCCCEEEEccCCCChhHHHHHHHHHHhhcCCCCcccCCCCCCeEEEEcCCHHHHHHHHHHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVA 294 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ll~il~~l~~~~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 294 (693)
+..|.-+++.+++|+|||...+-.+.+ +.... +.+++++.-- +-..|+...+
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~-~a~~~---------g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQ-WGTAM---------GKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHH-HTTTS---------CCCEEEEESS-SCHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHH-HHHhc---------CCcEEEEecc-CCHHHHHHHH
Confidence 335677899999999999864444443 32220 2256776542 3345555544
No 492
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=32.25 E-value=19 Score=38.55 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=14.5
Q ss_pred CCEEEEccCCCChhHH
Q psy1604 236 RDLMGCAQTGSGKTAA 251 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~ 251 (693)
+.+++.+|+|+|||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999985
No 493
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=32.10 E-value=37 Score=27.44 Aligned_cols=36 Identities=8% Similarity=0.133 Sum_probs=30.7
Q ss_pred CCCcEEEEecChHhHHHHHHHHhhCCCc-eEEecCCC
Q psy1604 517 DEDGVIVFVSTIRNADFIACYLCETEIA-TTSIHGSR 552 (693)
Q Consensus 517 ~~~kvLVF~~s~~~a~~l~~~L~~~~~~-v~~lhg~~ 552 (693)
...+++++|.+-..+...+..|...|+. +..+.|++
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 4567999999988899999999999985 88888884
No 494
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=32.09 E-value=23 Score=34.47 Aligned_cols=26 Identities=42% Similarity=0.600 Sum_probs=19.2
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHh
Q psy1604 233 LEGRDLMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 233 l~g~~vlv~a~TGsGKTl~~ll~il~~l 260 (693)
..|.-+.+.+|.|+|||. ++-++.-+
T Consensus 31 ~~Ge~~~liG~nGsGKST--Ll~~i~Gl 56 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKST--LLQIVAGL 56 (266)
T ss_dssp CTTCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHH--HHHHHhCC
Confidence 367788899999999998 44444333
No 495
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=32.07 E-value=20 Score=32.84 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.1
Q ss_pred CCEEEEccCCCChhHHH
Q psy1604 236 RDLMGCAQTGSGKTAAF 252 (693)
Q Consensus 236 ~~vlv~a~TGsGKTl~~ 252 (693)
..+++.++.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788999999999863
No 496
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=32.07 E-value=21 Score=31.53 Aligned_cols=15 Identities=20% Similarity=0.034 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHH
Q psy1604 238 LMGCAQTGSGKTAAF 252 (693)
Q Consensus 238 vlv~a~TGsGKTl~~ 252 (693)
+++.++.|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEESCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
No 497
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=32.02 E-value=1.2e+02 Score=34.83 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHhccCCCcEEEEecChHhHHHHHHHHhh----CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeC
Q psy1604 508 KLLELLREKDEDGVIVFVSTIRNADFIACYLCE----TEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATA 576 (693)
Q Consensus 508 ~L~~~l~~~~~~kvLVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~~~~~R~~~~~~F~~g~~~ILVaT~ 576 (693)
.|--++....+.+++|.++++.-|...++.+.. .++.+.++.|+++..+|..... ++|+++|+
T Consensus 142 ~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y~------~DIvygTp 208 (922)
T 1nkt_A 142 VLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYN------ADITYGTN 208 (922)
T ss_dssp HHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHHH------SSEEEEEH
T ss_pred HHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcC------CCEEEECc
No 498
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=31.98 E-value=23 Score=34.86 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=0.0
Q ss_pred hhcCCCEEEEccCCCChhHHHHHHHH
Q psy1604 232 GLEGRDLMGCAQTGSGKTAAFLIPIM 257 (693)
Q Consensus 232 il~g~~vlv~a~TGsGKTl~~ll~il 257 (693)
+..|.-+.+.+|.|+|||. ++-++
T Consensus 44 i~~Ge~~~liG~NGsGKST--Llk~l 67 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTT--LLNIL 67 (279)
T ss_dssp EETTCEEEEECCTTSSHHH--HHHHH
T ss_pred EcCCCEEEEECCCCCcHHH--HHHHH
No 499
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=31.90 E-value=30 Score=31.52 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHh
Q psy1604 238 LMGCAQTGSGKTAAFLIPIMHHL 260 (693)
Q Consensus 238 vlv~a~TGsGKTl~~ll~il~~l 260 (693)
+++.+++|||||.. .-.+.+.+
T Consensus 3 I~i~G~~GsGKsT~-~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI-SAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHHHH-HHHHHHHH
T ss_pred EEEECCCccCHHHH-HHHHHHhc
No 500
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=31.90 E-value=29 Score=32.06 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHhh
Q psy1604 238 LMGCAQTGSGKTAAFLIPIMHHLL 261 (693)
Q Consensus 238 vlv~a~TGsGKTl~~ll~il~~l~ 261 (693)
.++.+++|+|||. ++-++..++
T Consensus 26 ~~I~G~NgsGKSt--il~ai~~~l 47 (203)
T 3qks_A 26 NLIIGQNGSGKSS--LLDAILVGL 47 (203)
T ss_dssp EEEECCTTSSHHH--HHHHHHHHH
T ss_pred EEEEcCCCCCHHH--HHHHHHHHh
Done!