RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1604
(693 letters)
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 175 bits (445), Expect = 4e-51
Identities = 106/222 (47%), Positives = 152/222 (68%), Gaps = 3/222 (1%)
Query: 181 WENVEVKVSGDN--PPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDL 238
++++ V V+G + IE+F+ L + N+ ++Y +PTPIQK AIPA LE RD+
Sbjct: 2 YDSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDI 61
Query: 239 MGCAQTGSGKTAAFLIPIMHHLLESP-GELVTGYCAQPEVIICAPTRELVMQIHEVACKY 297
M CAQTGSGKTAAFLIPI++HL+ + A P+ +I APTREL +QI + K+
Sbjct: 62 MACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF 121
Query: 298 AYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEA 357
+ ++ L+ C+ YGGA + R+++ GC++LVAT GRL D +++ +ISL +++VLDEA
Sbjct: 122 SLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEA 181
Query: 358 DRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQK 399
DRMLDMGF I+ +++ S MP NRQTLMFSATFP+ IQK
Sbjct: 182 DRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQK 223
Score = 76.5 bits (187), Expect = 4e-16
Identities = 51/91 (56%), Positives = 66/91 (72%), Gaps = 7/91 (7%)
Query: 401 GCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVAN 460
GC++LVAT GRL D +++ +ISL +++VLDEADRMLDMGF I+ +++ S MP N
Sbjct: 148 GCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN 207
Query: 461 RQTLMFSATFPETIQK-------NYIFIAVG 484
RQTLMFSATFP+ IQK NYIF+ VG
Sbjct: 208 RQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 164 bits (415), Expect = 3e-47
Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 15/202 (7%)
Query: 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGR-DLMGCAQTGSGKTAAFLIPIM 257
+F L + ++ ++ + KPT IQ IP L +++ A+TGSGKTA+F IP++
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 64
Query: 258 HHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHF 317
E II PTREL +Q+ + + LKI YGG +
Sbjct: 65 EL---------VNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQ 115
Query: 318 NRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHST 377
+ L K NI+V T GR+ D ++RG ++L +V++ +LDEAD ML+MGF+ D++ ++
Sbjct: 116 IKAL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN 174
Query: 378 MPDVANRQTLMFSATFPETIQK 399
+++ L+FSAT P I
Sbjct: 175 ----KDKRILLFSATMPREILN 192
Score = 102 bits (254), Expect = 2e-25
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 11/97 (11%)
Query: 394 PETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHS 453
P+ K NI+V T GR+ D ++RG ++L +V++ +LDEAD ML+MGF+ D++ ++
Sbjct: 114 PQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNAC 173
Query: 454 TMPDVANRQTLMFSATFPETIQ-------KNYIFIAV 483
+++ L+FSAT P I +Y FI
Sbjct: 174 N----KDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 157 bits (398), Expect = 5e-45
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 13/208 (6%)
Query: 192 NPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251
N + + F+ L E L++ + + +P+ IQ+ AI +EG D++ AQ+G+GKT
Sbjct: 4 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 63
Query: 252 FLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGG 311
F I + + S P+ ++ APTREL +QI +V A+ +K+ GG
Sbjct: 64 FSIAALQRIDTSVKA--------PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGG 115
Query: 312 ASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQH 371
S + L + I+V T GR+ D + R R ++ +LDEAD ML GF I
Sbjct: 116 TSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQ 174
Query: 372 VMQHSTMPDVANRQTLMFSATFPETIQK 399
+ +P Q ++ SAT P + +
Sbjct: 175 IFTL--LP--PTTQVVLLSATMPNDVLE 198
Score = 76.4 bits (187), Expect = 2e-16
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Query: 363 MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRIS 422
L + VM + D+ + ++ + + I+V T GR+ D + R R
Sbjct: 89 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFR 148
Query: 423 LASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQ------- 475
++ +LDEAD ML GF I + +P Q ++ SAT P +
Sbjct: 149 TDKIKMFILDEADEMLSSGFKEQIYQIFTL--LP--PTTQVVLLSATMPNDVLEVTTKFM 204
Query: 476 KNYIFIAV 483
+N + I V
Sbjct: 205 RNPVRILV 212
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 157 bits (398), Expect = 8e-45
Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 13/209 (6%)
Query: 192 NPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAA 251
N ++SF+ L E L++ + + KP+ IQ+ AI ++G D++ AQ+G+GKTA
Sbjct: 6 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT 65
Query: 252 FLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGG 311
F I I+ + + ++ APTREL QI +V GG
Sbjct: 66 FAISILQQIELDLK--------ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 117
Query: 312 ASSMHFNRQLEKG-CNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQ 370
+ ++L+ +I+V T GR+ D+L+R +S ++ VLDEAD ML GF I
Sbjct: 118 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 177
Query: 371 HVMQHSTMPDVANRQTLMFSATFPETIQK 399
+ Q + +N Q ++ SAT P + +
Sbjct: 178 DIFQK--LN--SNTQVVLLSATMPSDVLE 202
Score = 75.3 bits (184), Expect = 5e-16
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 368 DIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVR 427
+ + + +Q + +I+V T GR+ D+L+R +S ++
Sbjct: 98 KVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIK 157
Query: 428 FVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQ-------KNYIF 480
VLDEAD ML GF I + Q + +N Q ++ SAT P + ++ I
Sbjct: 158 MFVLDEADEMLSRGFKDQIYDIFQK--LN--SNTQVVLLSATMPSDVLEVTKKFMRDPIR 213
Query: 481 IAVG 484
I V
Sbjct: 214 ILVK 217
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 151 bits (382), Expect = 1e-42
Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 22/226 (9%)
Query: 174 TGINFSGWENVEVKVSGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGL 233
T + F E V+V +F++ GLRE L++ + + KP+ IQ+ AI +
Sbjct: 3 TKVEFETSEEVDV----------TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII 52
Query: 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293
+GRD++ +Q+G+GKTA F I ++ + + + +I APTREL +QI +
Sbjct: 53 KGRDVIAQSQSGTGKTATFSISVLQC--------LDIQVRETQALILAPTRELAVQIQKG 104
Query: 294 ACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVV 353
++ GG + R+L+ G +++ T GR+ D++ R + +++ +V
Sbjct: 105 LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 164
Query: 354 LDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQK 399
LDEAD ML+ GF I V ++ +P Q ++ SAT P I +
Sbjct: 165 LDEADEMLNKGFKEQIYDVYRY--LP--PATQVVLISATLPHEILE 206
Score = 66.4 bits (161), Expect = 7e-13
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 399 KKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDV 458
G +++ T GR+ D++ R + +++ +VLDEAD ML+ GF I V ++ +P
Sbjct: 133 DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRY--LP-- 188
Query: 459 ANRQTLMFSATFPETIQ-------KNYIFIAVG 484
Q ++ SAT P I + I I V
Sbjct: 189 PATQVVLISATLPHEILEMTNKFMTDPIRILVK 221
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 135 bits (339), Expect = 7e-37
Identities = 56/201 (27%), Positives = 103/201 (51%), Gaps = 11/201 (5%)
Query: 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMH 258
FE L+ L+ + + + KP+PIQ+ +IP L GRD++ A+ G+GK+ A+LIP++
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 63
Query: 259 HLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFN 318
L ++I + + K+ GG +
Sbjct: 64 RLDLKK-------DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI 116
Query: 319 RQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTM 378
+L+ ++++AT GR+ D++ +G + V+ +VLDEAD++L F+ ++ ++ +
Sbjct: 117 MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT--L 174
Query: 379 PDVANRQTLMFSATFPETIQK 399
P NRQ L++SATFP ++QK
Sbjct: 175 P--KNRQILLYSATFPLSVQK 193
Score = 56.9 bits (136), Expect = 7e-10
Identities = 27/78 (34%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 399 KKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDV 458
++++AT GR+ D++ +G + V+ +VLDEAD++L F+ ++ ++ +P
Sbjct: 120 DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT--LP-- 175
Query: 459 ANRQTLMFSATFPETIQK 476
NRQ L++SATFP ++QK
Sbjct: 176 KNRQILLYSATFPLSVQK 193
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 135 bits (339), Expect = 7e-37
Identities = 53/204 (25%), Positives = 99/204 (48%), Gaps = 15/204 (7%)
Query: 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMH 258
F L+ L++ + + P+ +Q IP + G D++ A++G GKTA F++ +
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 259 HLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYA-YSSVLKICLHYGGASSMHF 317
+ Q V++ TREL QI + +++ Y +K+ + +GG S
Sbjct: 62 Q--------LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKD 113
Query: 318 NRQLEK-GCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD-MGFLGDIQHVMQH 375
L+K +I+V T GR+ + ++L ++ +LDE D+ML+ + D+Q + +
Sbjct: 114 EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 173
Query: 376 STMPDVANRQTLMFSATFPETIQK 399
P +Q +MFSAT + I+
Sbjct: 174 --TPH--EKQVMMFSATLSKEIRP 193
Score = 66.4 bits (161), Expect = 5e-13
Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 352 VVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGR 411
V++ R L + + ++ VA + E ++K +I+V T GR
Sbjct: 72 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGR 131
Query: 412 LKDILDRGRISLASVRFVVLDEADRMLD-MGFLGDIQHVMQHSTMPDVANRQTLMFSATF 470
+ + ++L ++ +LDE D+ML+ + D+Q + + P +Q +MFSAT
Sbjct: 132 ILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM--TPH--EKQVMMFSATL 187
Query: 471 PETIQ-------KNYIFIAV 483
+ I+ ++ + I V
Sbjct: 188 SKEIRPVCRKFMQDPMEIFV 207
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 127 bits (319), Expect = 3e-34
Identities = 63/201 (31%), Positives = 106/201 (52%), Gaps = 12/201 (5%)
Query: 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMH 258
+FE L+ L+ + ++ + KP+PIQ+ AIP + GRD++ A+ G+GKTAAF+IP +
Sbjct: 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 61
Query: 259 HLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFN 318
+ + + +I PTREL +Q +V + + GG +
Sbjct: 62 KVKPK--------LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI 113
Query: 319 RQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTM 378
+L + +ILV T GR+ D+ R L+ ++DEAD+ML F I+ ++ +
Sbjct: 114 LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSF--L 171
Query: 379 PDVANRQTLMFSATFPETIQK 399
P Q+L+FSATFP T+++
Sbjct: 172 P--PTHQSLLFSATFPLTVKE 190
Score = 53.1 bits (126), Expect = 2e-08
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 399 KKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDV 458
+ +ILV T GR+ D+ R L+ ++DEAD+ML F I+ ++ +P
Sbjct: 117 NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSF--LPP- 173
Query: 459 ANRQTLMFSATFPETIQ-------KNYIFIAVG 484
Q+L+FSATFP T++ I +
Sbjct: 174 -THQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 124 bits (311), Expect = 1e-32
Identities = 36/220 (16%), Positives = 63/220 (28%), Gaps = 29/220 (13%)
Query: 194 PRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFL 253
+ F L + + +P IQK L A TG GKT+ L
Sbjct: 18 AASLCLFPEDFLLKEF-VEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGL 76
Query: 254 IPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICL--HYGG 311
+ + PT LV+Q E KYA + + Y
Sbjct: 77 AMSLFLA-----------LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYH 125
Query: 312 ASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD--------- 362
++ + L + L F+ +D+ D +L
Sbjct: 126 GRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLL 185
Query: 363 --MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKK 400
+GF D++ A ++ +AT + + +
Sbjct: 186 HLLGFHYDLKTKSWVGE----ARGCLMVSTATAKKGKKAE 221
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 118 bits (297), Expect = 3e-31
Identities = 30/208 (14%), Positives = 62/208 (29%), Gaps = 15/208 (7%)
Query: 199 SFESAGLREILVKNLKKS-NYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIM 257
E L + L+++ Y + P Q+ I L GRD + TG GK+ + IP +
Sbjct: 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL 62
Query: 258 HHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHF 317
++ +P L+ + ++
Sbjct: 63 LLN--------------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVM 108
Query: 318 NRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHST 377
+L RL ++ + + +DEA + G ++
Sbjct: 109 TGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQL 168
Query: 378 MPDVANRQTLMFSATFPETIQKKGCNIL 405
+ +AT +T ++ +L
Sbjct: 169 RQRFPTLPFMALTATADDTTRQDIVRLL 196
Score = 57.7 bits (138), Expect = 4e-10
Identities = 12/105 (11%), Positives = 30/105 (28%)
Query: 373 MQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVVLD 432
+ + QT + +L RL ++ + + +D
Sbjct: 87 ANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146
Query: 433 EADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKN 477
EA + G ++ + +AT +T +++
Sbjct: 147 EAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQD 191
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 116 bits (290), Expect = 3e-30
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 8/201 (3%)
Query: 199 SFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMH 258
F + +++ +K + KPT IQ+ IP L G ++G +QTG+GKT A+L+PIM
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIME 61
Query: 259 HLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFN 318
A ++ + ++ ++ GG
Sbjct: 62 K----IKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL 117
Query: 319 RQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTM 378
+L +I++ T GR+ D + + + + +V+DEAD MLDMGF+ D+ + M
Sbjct: 118 EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAAR--M 175
Query: 379 PDVANRQTLMFSATFPETIQK 399
P + Q L+FSAT PE ++
Sbjct: 176 P--KDLQMLVFSATIPEKLKP 194
Score = 48.5 bits (114), Expect = 5e-07
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 398 QKKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPD 457
+I++ T GR+ D + + + + +V+DEAD MLDMGF+ D+ + MP
Sbjct: 120 LNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAAR--MP- 176
Query: 458 VANRQTLMFSATFPETIQ-------KNYIFIAV 483
+ Q L+FSAT PE ++ +N F+ V
Sbjct: 177 -KDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 111 bits (279), Expect = 8e-29
Identities = 30/192 (15%), Positives = 64/192 (33%), Gaps = 16/192 (8%)
Query: 204 GLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLES 263
+ V LK+ + P Q A+ G++L+ T +GKT + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREA--- 65
Query: 264 PGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEK 323
+ + P R L + +E K+ + S
Sbjct: 66 --------IKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGD--- 114
Query: 324 GCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVAN 383
C+I+V T + ++ + +V +V+DE + ++ ++ +
Sbjct: 115 -CDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-KA 172
Query: 384 RQTLMFSATFPE 395
+ + SAT P
Sbjct: 173 LRVIGLSATAPN 184
Score = 46.1 bits (108), Expect = 4e-06
Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 1/103 (0%)
Query: 370 QHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFV 429
+ + R + C+I+V T + ++ + +V +
Sbjct: 83 EKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCL 142
Query: 430 VLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPE 472
V+DE + ++ ++ + + + SAT P
Sbjct: 143 VVDEIHLLDSEKRGATLEILVTKMRRMN-KALRVIGLSATAPN 184
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 113 bits (283), Expect = 3e-28
Identities = 27/166 (16%), Positives = 47/166 (28%), Gaps = 17/166 (10%)
Query: 492 DVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGS 551
++ + L + L ++F + + D +A L I + +
Sbjct: 10 NIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRG 69
Query: 552 RLQSQREQ----------AIHDFKTKKMKVLVATAVASRG---LDIKGIRHVINYDLPQE 598
S A+ T ++ + + LPQ+
Sbjct: 70 LDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQD 129
Query: 599 IDEYVHRIGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILE--QAG 642
R GRTGR G G F P + + D + E AG
Sbjct: 130 AVSRTQRRGRTGR-GKPGIY-RFVAPGERPSGMFDSSVLCECYDAG 173
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 110 bits (276), Expect = 7e-28
Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 494 VQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRL 553
V+ + +V + L + EK G I++ T A+ I L +
Sbjct: 1 VRNVEDVAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKN------KFRIGIV 54
Query: 554 QSQREQAIHDFKTKKMKVLVATA----VASRGLDI-KGIRHVINYDLPQEIDEYVHRIGR 608
+ ++ F ++ L+ TA RGLD+ + IR + P + I
Sbjct: 55 TATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIED 110
Query: 609 TGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLK 650
+ + Y + + L+ +E+ V E LK
Sbjct: 111 IDSLSPQMVKLLAYLYR-NVDEIERLLPAVERHIDEVREILK 151
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 105 bits (261), Expect = 6e-27
Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 5/158 (3%)
Query: 490 STDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIH 549
+ ++ Q+ +EV + ++ + L LL+ K+ G +VF T R+ +A L + +IH
Sbjct: 1 NANIEQSYVEVNENERFEALCRLLKNKEFYG-LVFCKTKRDTKELASMLRDIGFKAGAIH 59
Query: 550 GSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRT 609
G QSQRE+ I FK KK+++L+AT V SRG+D+ + VINY LPQ + Y+HRIGRT
Sbjct: 60 GDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRT 119
Query: 610 GRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPE 647
GR G KG+A S + + K L I + +
Sbjct: 120 GRAGKKGKAISIINRRE----YKKLRYIERAMKLKIKK 153
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 108 bits (271), Expect = 7e-27
Identities = 49/288 (17%), Positives = 94/288 (32%), Gaps = 27/288 (9%)
Query: 349 VRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNIL--V 406
+V +D + + ++ +++ + + I KK +
Sbjct: 4 FEWVRVDLPEIYKE------VRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQI 57
Query: 407 ATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMF 466
K D + L + L A +L+ L + + + +
Sbjct: 58 INEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSAL-----RAYIKKLYEEAKAGS 112
Query: 467 SATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLE-LLREKDEDGVIVFV 525
+ E + A+ ++ + L+ PK K K+++ L+ K +IVF
Sbjct: 113 TKASKEIFSDKRMKKAISLL----VQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFT 168
Query: 526 STIRNADFIACYLCETEIATTSIHGSRLQSQR--------EQAIHDFKTKKMKVLVATAV 577
+ A I L + I G + + + +F + VLVAT+V
Sbjct: 169 NYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSV 228
Query: 578 ASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRATSFYDPD 625
GLD+ + V+ Y+ + R GRTGR GR
Sbjct: 229 GEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR-HMPGRVIILMAKG 275
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 101 bits (252), Expect = 1e-25
Identities = 42/157 (26%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 495 QTILEVPKQQKK-KKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRL 553
Q + V +++ K + L +L ++F +T R + + L + ++I+
Sbjct: 3 QFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLP 62
Query: 554 QSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVG 613
Q +R+ + +F++ ++L++T + +RG+D++ + VINYDLP + Y+HRIGR GR G
Sbjct: 63 QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG 122
Query: 614 NKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLK 650
KG A +F + GA+ ++L + + +P +
Sbjct: 123 RKGVAINFVTNEDVGAM-RELEKFYSTQIEELPSDIA 158
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 93.9 bits (232), Expect = 7e-23
Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
Query: 495 QTILEVPKQQKK-KKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRL 553
Q + V +++ K L +L ++F +T R D++ + E +S+HG
Sbjct: 10 QFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMP 69
Query: 554 QSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVG 613
Q +RE + +F++ +VL++T V +RGLD+ + +INYDLP + Y+HRIGR+GR G
Sbjct: 70 QKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG 129
Query: 614 NKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFL 649
KG A +F D D I +D+ + +P +
Sbjct: 130 RKGVAINFVKND-DIRILRDIEQYYSTQIDEMPMNV 164
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 94.2 bits (233), Expect = 8e-22
Identities = 35/240 (14%), Positives = 71/240 (29%), Gaps = 39/240 (16%)
Query: 402 CNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANR 461
+ + L I + + +++DEA ST ++
Sbjct: 78 EIVDLMCHATFTMRLLSP-IRVPNYNLIIMDEAHFTDPASIA----ARGYISTRVEMGEA 132
Query: 462 QTLMFSATFPETIQKNYIFIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGV 521
+ +AT P + A ++ E+P++ + K +
Sbjct: 133 AGIFMTATPPGSRDPFPQSNAP---------IMDEEREIPERSWNSGHEWVTDFKGK--T 181
Query: 522 IVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRG 581
+ FV +I+ + IA L + + S+ + +T +V T ++ G
Sbjct: 182 VWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIK----TRTNDWDFVVTTDISEMG 237
Query: 582 LDIK---------GIRHVINYDLPQEID----------EYVHRIGRTGRVGNKGRATSFY 622
+ K ++ VI D + + R GR GR Y
Sbjct: 238 ANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIY 297
Score = 82.7 bits (203), Expect = 7e-18
Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 26/166 (15%)
Query: 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293
+ R + G+GKT +L I+ ++ +I APTR + ++ E
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKRGL----------RTLILAPTRVVAAEMEEA 57
Query: 294 ACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVV 353
+ + + + L I + + ++
Sbjct: 58 LRGLPIRYQ-----------TPAIRAEHTGREIVDLMCHATFTMRLLSP-IRVPNYNLII 105
Query: 354 LDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQK 399
+DEA ST ++ + +AT P +
Sbjct: 106 MDEAHFTDPASIA----ARGYISTRVEMGEAAGIFMTATPPGSRDP 147
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 87.4 bits (215), Expect = 1e-20
Identities = 47/155 (30%), Positives = 81/155 (52%)
Query: 495 QTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQ 554
Q +++ +K +KL +LL + + V++FV +++ +A L E +IH Q
Sbjct: 4 QYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 63
Query: 555 SQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGN 614
+R FK + ++LVAT + RG+DI+ + NYD+P++ D Y+HR+ R GR G
Sbjct: 64 EERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGT 123
Query: 615 KGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFL 649
KG A +F + D I D+ E +P+ +
Sbjct: 124 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 86.6 bits (213), Expect = 2e-20
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 495 QTILEVPKQQKK-KKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRL 553
Q + ++ K + L + I+F T RNA ++ + + + + G
Sbjct: 8 QYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELT 67
Query: 554 QSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQE------IDEYVHRIG 607
QR I F+ K KVL+ T V +RG+D+K + V+N+DLP + + Y+HRIG
Sbjct: 68 VEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIG 127
Query: 608 RTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEF 648
RTGR G KG A + + D+ L++I + + +
Sbjct: 128 RTGRFGKKGLAFNMIEVDE----LPSLMKIQDHFNSSIKQL 164
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 87.4 bits (215), Expect = 2e-20
Identities = 30/127 (23%), Positives = 59/127 (46%)
Query: 500 VPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQ 559
+ K + +L+ ++E+ I++ ++ + A L I+ + H + R
Sbjct: 12 MEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRAD 71
Query: 560 AIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRAT 619
F+ ++++VAT G++ +R V+++D+P+ I+ Y GR GR G A
Sbjct: 72 VQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 131
Query: 620 SFYDPDQ 626
FYDP
Sbjct: 132 LFYDPAD 138
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 86.1 bits (212), Expect = 8e-20
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 5/129 (3%)
Query: 495 QTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQ 554
+ + K +KL E+L +D +I+F I+ +I +
Sbjct: 70 ARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKV-----FLIPAITHRTSR 124
Query: 555 SQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGN 614
+RE+ + F+T + + +V++ V G+D+ + EY+ R+GR R
Sbjct: 125 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSK 184
Query: 615 KGRATSFYD 623
+ Y+
Sbjct: 185 GKKEAVLYE 193
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 83.3 bits (204), Expect = 7e-19
Identities = 43/187 (22%), Positives = 73/187 (39%), Gaps = 16/187 (8%)
Query: 213 LKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYC 272
+ + + +P Q+ E + + TG GKT ++ + L + G
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMMIAEYRLTKYGG------- 53
Query: 273 AQPEVIICAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATM 332
+V++ APT+ LV+Q E + KI G S ++ + I VAT
Sbjct: 54 ---KVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVI-VATP 109
Query: 333 GRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSAT 392
+++ L GRISL V +V DEA R + I + N + +A+
Sbjct: 110 QTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA----KNPLVIGLTAS 165
Query: 393 FPETIQK 399
T +K
Sbjct: 166 PGSTPEK 172
Score = 37.8 bits (86), Expect = 0.002
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 408 TMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFS 467
T +++ L GRISL V +V DEA R + I + N + +
Sbjct: 108 TPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA----KNPLVIGLT 163
Query: 468 ATFPETIQK 476
A+ T +K
Sbjct: 164 ASPGSTPEK 172
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 80.9 bits (199), Expect = 9e-19
Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 12/138 (8%)
Query: 492 DVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGS 551
++ + L + L ++F + + D +A L I + +
Sbjct: 9 NIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYY-- 66
Query: 552 RLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKG---IRHVINYDLPQEIDEYVHRIGR 608
R + T V+VAT G I + PQ+ R GR
Sbjct: 67 -----RGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGR 121
Query: 609 TGRVGNKGRATSFYDPDQ 626
TGR G G F P +
Sbjct: 122 TGR-GKPGIYR-FVAPGE 137
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 77.5 bits (190), Expect = 4e-17
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 5/142 (3%)
Query: 491 TDVVQTILEV-PKQQKKKKLLELLREKDEDG--VIVFVSTIRNADFIACYLCETEIATTS 547
T ++ ++V P + + L+ +RE+ E +V T + A+ + YL E I
Sbjct: 1 TGLLDPTIDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAY 60
Query: 548 IHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHR-- 605
+H +R + I D + K VLV + GLDI + V D +E R
Sbjct: 61 LHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 120
Query: 606 IGRTGRVGNKGRATSFYDPDQD 627
I GR D
Sbjct: 121 IQTIGRAARNANGHVIMYADTI 142
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 76.2 bits (186), Expect = 1e-16
Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 1/158 (0%)
Query: 493 VVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSR 552
+ Q V ++QK L L + + I+F ++ + +A + + + H
Sbjct: 7 ITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARM 66
Query: 553 LQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRV 612
Q +R + H+F+ K++ LV + + +RG+DI+ + VIN+D P+ + Y+HRIGR+GR
Sbjct: 67 KQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRF 126
Query: 613 GNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEFLK 650
G+ G A + + + D + + L +P +
Sbjct: 127 GHLGLAINLINWN-DRFNLYKIEQELGTEIAAIPATID 163
>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 61.0 bits (148), Expect = 7e-13
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 96 GGGDRGN--SKPGDWMC---SCGASNFAKRDACFKCSEPKPEGA 134
G N GDW+C CG NFA+R +C +C K G
Sbjct: 1 GSMSTKNFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTGP 44
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 64.7 bits (157), Expect = 1e-12
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 5/142 (3%)
Query: 491 TDVVQTILEV-PKQQKKKKLLELLREKDEDG--VIVFVSTIRNADFIACYLCETEIATTS 547
T ++ ++ V P + + L+E +RE+ G +V V T+R A+ + +L E I
Sbjct: 1 TGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARY 60
Query: 548 IHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHR-- 605
+H +R+ I D + LV + GLDI + V D +E R
Sbjct: 61 LHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 120
Query: 606 IGRTGRVGNKGRATSFYDPDQD 627
I GR R + D+
Sbjct: 121 IQTIGRAARNARGEVWLYADRV 142
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 56.5 bits (135), Expect = 1e-09
Identities = 36/175 (20%), Positives = 55/175 (31%), Gaps = 41/175 (23%)
Query: 502 KQQKKKKLLELLREKDEDG--VIVFVSTIRNADFIACYLCETEIATTS------------ 547
++ K EL+ E + V+VF ST R A+ A L
Sbjct: 22 STSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEEN 81
Query: 548 ------------------IHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRH 589
H L QR F+ +KV+VAT + G+++ R
Sbjct: 82 EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRV 141
Query: 590 VI-------NYDLPQEIDEYVHRIGRTGRVG--NKGRATSFYDPDQDGAIAKDLV 635
++ Y ++ EY GR GR G +G A K +
Sbjct: 142 IVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYI 196
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 55.6 bits (133), Expect = 2e-09
Identities = 39/198 (19%), Positives = 76/198 (38%), Gaps = 20/198 (10%)
Query: 494 VQTILEVPKQQKKKKLLELLREKDEDGVIVFV--STIRNADFIACYLCET---------- 541
VQT+ + + ++ E +R++ G F+ I +D +
Sbjct: 5 VQTM--LVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF 62
Query: 542 -EIATTSIHGSRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEID 600
E +HG Q ++++ + +F + +LV+T V G+D+ ++ + +
Sbjct: 63 PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGL 122
Query: 601 EYVHR-IGRTGRVGNKGRATSFYDPDQDGAIAKDLVRILEQAGQPVPEF-LKFGGGGGGY 658
+H+ GR GR G + + A+ + L G + E+ LK G G +
Sbjct: 123 AQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFFTLNTDGFKIAEYDLKTRGPGEFF 182
Query: 659 GR---GGDAFGARDIRHD 673
G G F D+ D
Sbjct: 183 GVKQHGLSGFKVADLYRD 200
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 50.7 bits (121), Expect = 2e-07
Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 29/156 (18%)
Query: 491 TDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHG 550
DV I P +L + F+ +IR A+ +A L + + ++
Sbjct: 14 EDVQTDIPSEPWNTGHDWILAD-----KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR 68
Query: 551 SRLQSQREQAIHDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEY-------- 602
E+ K KK ++AT +A G ++ + V++ +
Sbjct: 69 K----TFEREYPTIKQKKPDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAI 123
Query: 603 -----------VHRIGRTGRVGNKGRATSFYDPDQD 627
R GR GR N+ + +Y
Sbjct: 124 KGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTS 159
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 45.3 bits (106), Expect = 1e-05
Identities = 19/142 (13%), Positives = 49/142 (34%), Gaps = 4/142 (2%)
Query: 502 KQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQAI 561
K +L + R D V++ + + D + G+ +R + +
Sbjct: 102 KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIV 161
Query: 562 ---HDFKTKKMKVLVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIGRTGRVGNKGRA 618
++ + + ++++ GL++ G ++ +D + R R G K +
Sbjct: 162 ERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQK-KT 220
Query: 619 TSFYDPDQDGAIAKDLVRILEQ 640
Y G I + +++
Sbjct: 221 CYIYRLLSTGTIEEKILQRQAH 242
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 39.1 bits (91), Expect = 6e-04
Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 18/146 (12%)
Query: 502 KQQKKKKLLELLREKDEDG--VIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQREQ 559
+ K K + E + ++ G V+V + ++ I+ L I ++ +RE
Sbjct: 16 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLN--AKNHEREA 73
Query: 560 AIHDFKTKKMKVLVATAVASRGLDIK--------GIRHVINYDLPQEIDEYVHRIGRTGR 611
I + +K V +AT +A RG DIK G V+ + + GR+GR
Sbjct: 74 QIIEEAGQKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGR 133
Query: 612 VGNKGRATSFYDPDQDGAIAKDLVRI 637
G+ G + ++ +L+R
Sbjct: 134 QGDPGITQFYL------SMEDELMRR 153
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 37.4 bits (85), Expect = 0.001
Identities = 21/162 (12%), Positives = 46/162 (28%), Gaps = 28/162 (17%)
Query: 234 EGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEV 293
+G + G+GKT FL I+ + ++ APTR ++ ++ E
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAEC----------ARRRLRTLVLAPTRVVLSEMKEA 55
Query: 294 ACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVV 353
+ +G + R+ + + ++
Sbjct: 56 FHGLDVKFHTQAFSAHGSGREVID-------AMCHATLTYRMLEPTRVVNWEV-----II 103
Query: 354 LDEADRMLDMGFLG-DIQHVMQHSTMPDVANRQTLMFSATFP 394
+DEA + + ++ +AT P
Sbjct: 104 MDEAHFLDPASIAARGWAAHRARANESAT-----ILMTATPP 140
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 34.7 bits (78), Expect = 0.038
Identities = 51/380 (13%), Positives = 107/380 (28%), Gaps = 38/380 (10%)
Query: 187 KVSGDNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGS 246
++ PI+ AG+ LV+ ++++ P +Q A A L A S
Sbjct: 102 QILSREHRPPIDVVIQAGVVPRLVEFMRENQ---PEMLQLEAAWA------LTNIASGTS 152
Query: 247 GKTAAFL----IPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSV 302
+T + +P+ LL + V + + +
Sbjct: 153 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWA-------LGNVAGDSTDYRDYVLQCNA 205
Query: 303 LKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLD 362
++ L ++ R + L D + + + + + ++D
Sbjct: 206 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD 265
Query: 363 --------MGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKD 414
+ + +P S + NI+ + +
Sbjct: 266 ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQV 325
Query: 415 ILDRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETI 474
+++ G + + E + + +I + V + + E
Sbjct: 326 VINAGVLPALRLLLSSPKENIKKEACWTISNITA-GNTEQIQAVIDANLIPPLVKLLEVA 384
Query: 475 QKNYIFIAVGIIGGASTDVV--QTILEVPKQQKK-KKLLELLREKDEDGVIVFVSTIRN- 530
+ A I AS+ + I+ Q K L +LL D + V + + N
Sbjct: 385 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 444
Query: 531 -----ADFIACYLCETEIAT 545
AD A L E A
Sbjct: 445 LKMGEADKEARGLNINENAD 464
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 34.0 bits (76), Expect = 0.061
Identities = 58/369 (15%), Positives = 95/369 (25%), Gaps = 23/369 (6%)
Query: 191 DNPPRPIESFESAGLREILVKNLKKSNYTKPTPIQKYAIPAGLEGRDLMGCAQTGSGKTA 250
PP I++ AGL V L K++ + IQ + A L A S +T
Sbjct: 45 KQPP--IDNIIRAGLIPKFVSFLGKTDCSP---IQFESAWA------LTNIASGTSEQTK 93
Query: 251 AF----LIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYSSVLKIC 306
A IP LL SP ++ I + + ++L +
Sbjct: 94 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 153
Query: 307 LHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFL 366
A N N+ + D +
Sbjct: 154 DLSTLACGYLRN-LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 212
Query: 367 GDIQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASV 426
+ V T L A + ++ + + +
Sbjct: 213 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 272
Query: 427 RFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSATFPETIQ-------KNYI 479
V + M + T Q ++ P + K
Sbjct: 273 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 332
Query: 480 FIAVGIIGGASTDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLC 539
A I S V+ I+ + + L+ LL KD + V + I N A L
Sbjct: 333 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG 392
Query: 540 ETEIATTSI 548
ETE + I
Sbjct: 393 ETEKLSIMI 401
>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153
{Human (Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 29.7 bits (67), Expect = 0.070
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 106 GDWMCS-CGASNFAKRDACFKCSEPKP 131
G W C C N + C C PKP
Sbjct: 3 GTWDCDTCLVQNKPEAIKCVACETPKP 29
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 31.8 bits (71), Expect = 0.19
Identities = 24/173 (13%), Positives = 36/173 (20%), Gaps = 38/173 (21%)
Query: 220 KPTPIQKYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVII 279
Q+ A+ L + TGSGKT +
Sbjct: 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKT---------------------------HVA 102
Query: 280 CAPTRELVMQIHEVACKYAYSSVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDIL 339
A EL V A + K L G + K T+
Sbjct: 103 MAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKP--LTVSTYDSAY 160
Query: 340 DRGRISLASVRFVVLDEADRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSAT 392
++ DE + + L +AT
Sbjct: 161 VNAEKLGNRFMLLIFDEVHHLPAESY---------VQIAQMSIAPFRLGLTAT 204
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 29.4 bits (65), Expect = 0.66
Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 36/155 (23%)
Query: 241 CAQTGSGKTAAFLIPIMHHLLESPGELVTGYCAQPEVIICAPTRELVMQIHEVACKYAYS 300
A TGSGK+ + +V++ P+ + K
Sbjct: 14 HAPTGSGKSTK----VPAAYAAQGY----------KVLVLNPSVAATLGFGAYMSKAHGV 59
Query: 301 SVLKICLHYGGASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEA--- 357
+ R + G I +T G+ S + ++ DE
Sbjct: 60 DP----------NIRTGVRTITTGSPITYSTYGKFLADGGC---SGGAYDIIICDECHST 106
Query: 358 DRMLDMGFLGDIQHVMQHSTMPDVANRQTLMFSAT 392
D +G +G + + + R ++ +AT
Sbjct: 107 DATSILG-IGTVLDQAETA-----GARLVVLATAT 135
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax
[TaxId: 5855]}
Length = 283
Score = 30.0 bits (66), Expect = 0.99
Identities = 12/79 (15%), Positives = 28/79 (35%)
Query: 491 TDVVQTILEVPKQQKKKKLLELLREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHG 550
D T+ + + ++ ++E E G +V + T R+ I E + + +G
Sbjct: 15 IDFDGTLFVDKDIKVPSENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMNFYG 74
Query: 551 SRLQSQREQAIHDFKTKKM 569
++D +
Sbjct: 75 MPGVYINGTIVYDQIGYTL 93
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 29.5 bits (65), Expect = 1.6
Identities = 38/300 (12%), Positives = 76/300 (25%), Gaps = 28/300 (9%)
Query: 204 GLREILVKNLKKSNYTKPTPIQ--KYAIPAGLEGRDLMGCAQTGSGKTAAFLIPIMHHLL 261
G R + LK+ K + +P E R L+ TG+GK+ L + + L
Sbjct: 17 GTRIVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKS-VLLRELAYTGL 75
Query: 262 ESPGELV--------TGYCAQPEVIICAPTRELVMQ---IHEVACKYAYSSVLKICLHYG 310
+V + + II P + +E+ Y + + G
Sbjct: 76 LRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRG 135
Query: 311 GASSMHFNRQLEKGCNILVATMGRLKDILDRGRISLASVRFVVLDEADRMLDMGFLGDIQ 370
+ L T +L I L + + R G L +
Sbjct: 136 KTDEAEEWASYGRLL--LRETAKKLALIGTPSMRELFHWTTIATFDDLRGFLEGTLAESL 193
Query: 371 HVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRFVV 430
+ + + + ++ V I F+
Sbjct: 194 FAGSNEASKALTSARFVLSDKLPE----------HVTMPDGDFSIRSWLEDPNGGNLFIT 243
Query: 431 LDEADRMLDMGFLGDI--QHVMQHSTMPDVANRQTLMFSATFPETIQKNYIFIAVGIIGG 488
E + ++P+ R+ +F + + A+
Sbjct: 244 WREDMGPALRPLISAWVDVVCTSILSLPEEPKRRLWLFIDELASLEKLASLADALTKGRK 303
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU
{Aquifex aeolicus [TaxId: 63363]}
Length = 215
Score = 28.6 bits (63), Expect = 1.9
Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 5/132 (3%)
Query: 310 GGASSMHFNRQLEKGCNILVATMGRL-KDILDRGRISLASVRFVVLDEADRMLDMGFLGD 368
GG M ++LE+ V M +L ++ +D+ +L ++ A+ ++ D
Sbjct: 2 GGGGGMKLFKELEE-TKEQVIKMAKLVQEAIDKATEALNKQN---VELAEEVIKGDDTID 57
Query: 369 IQHVMQHSTMPDVANRQTLMFSATFPETIQKKGCNILVATMGRLKDILDRGRISLASVRF 428
+ V + K + L ++I +R +
Sbjct: 58 LLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLERMGDEAENIAERAILLAEEPPL 117
Query: 429 VVLDEADRMLDM 440
+ M ++
Sbjct: 118 KPYVNINFMSEI 129
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 189
Score = 28.3 bits (62), Expect = 2.5
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 513 LREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQSQR-EQAIHDFKTKKMKV 571
+R + E G++ +++ I +ADF L + GS S I+D + K+K+
Sbjct: 46 VRTEAESGLLFYMARINHADFATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQWHKIKI 105
Query: 572 LVATAVASRGLDIKGIRHVINYDLPQEIDEYVHRIG 607
+ +D + + + +G
Sbjct: 106 VRVKQEGILYVDDASSQTISPKKADILDVVGILYVG 141
>d2ciwa1 a.39.3.1 (A:0-119) Cloroperoxidase {Fungus (Caldariomyces
fumago) [TaxId: 5474]}
Length = 120
Score = 27.2 bits (60), Expect = 3.2
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 15/62 (24%)
Query: 133 GAGGGAPGGADGAPFDPAKP-------PL--------YIPKDVDQSEDNLFSSGIQTGIN 177
G+G G P + P+ P P YIP D + +
Sbjct: 4 GSGIGYPYDNNTLPYVAPGPTDSRAPCPALNALANHGYIPHDGRAISRETLQNAFLNHMG 63
Query: 178 FS 179
+
Sbjct: 64 IA 65
>d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation inhibitor
TTHA0137 {Thermus thermophilus [TaxId: 274]}
Length = 124
Score = 27.1 bits (59), Expect = 3.3
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 32 VHVVRVEEAVVAMATEVTAEVVALAMGMEVEMEVVEAVTE 71
+ V T V AL G+ VE+ V A+ E
Sbjct: 86 FNEVYARYFTPPYPARATVAVKALPRGVRVEVACV-ALAE 124
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white
cedar (Juniperus ashei) [TaxId: 13101]}
Length = 346
Score = 28.1 bits (62), Expect = 3.4
Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 16/84 (19%)
Query: 108 WMCSCGASNFAK-RDACFKCSEPKPEGAGGGAPGGADGAPFDPAKPPLYIPKDVDQSEDN 166
W SN+ + R C+ G G GG G Y D + N
Sbjct: 8 WRGD---SNWDQNRMKLADCAV----GFGSSTMGGKGG--------DFYTVTSTDDNPVN 52
Query: 167 LFSSGIQTGINFSGWENVEVKVSG 190
++ G + +
Sbjct: 53 PTPGTLRYGATREKALWIIFSQNM 76
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 339
Score = 28.2 bits (62), Expect = 3.4
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 493 VVQTILEVPKQQKKKKLLELLRE 515
VVQ +++V + ++K ++ +R
Sbjct: 297 VVQKMIDVAEPGQRKIVMHKIRP 319
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A
[TaxId: 5061]}
Length = 359
Score = 28.2 bits (62), Expect = 3.8
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 13/58 (22%)
Query: 130 KPEGAGGGAPGGADGAPFDPAKPPLYIPKDVDQSEDNLFSSG-----IQTGINFSGWE 182
EG G GG P P +D+ L + +F+ E
Sbjct: 6 SAEGFAKGVTGGGSATP--------VYPDTIDELVSYLGDDEARVIVLTKTFDFTDSE 55
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 27.4 bits (60), Expect = 3.9
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Query: 496 TILEVPKQQKKKKLLEL-LREKDEDGVIVFVSTIRNADFIACYLCETEIATTSIHGSRLQ 554
++ + K +R D +GVI + T D+ L + +
Sbjct: 16 AVMTFDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQL 75
Query: 555 SQREQAIHD 563
+ D
Sbjct: 76 TVGAGPRLD 84
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B
[TaxId: 5061]}
Length = 359
Score = 27.8 bits (61), Expect = 5.0
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 13/59 (22%)
Query: 129 PKPEGAGGGAPGGADGAPFDPAKPPLYIPKDVDQSEDNLFSSG-----IQTGINFSGWE 182
EG G GG +P P D+ L + + +F+G E
Sbjct: 5 GAAEGFAHGVTGGGSASP--------VYPTTTDELVSYLGDNEPRVIILDQTFDFTGTE 55
>d1hn0a2 b.18.1.17 (A:25-234) Chondroitin ABC lyase I, N-terminal
domain {Proteus vulgaris [TaxId: 585]}
Length = 210
Score = 27.3 bits (60), Expect = 5.8
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 163 SEDNLFSSGIQTGINFSGWENVEVKVSGDNPPRPIE 198
+ +G + ++F+GW V V ++ D R +
Sbjct: 110 ISTSEAQAGFKVKLDFTGWRAVGVSLNNDLENREMT 145
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 132
Score = 25.8 bits (56), Expect = 9.5
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 567 KKMKVLVATAVASRGLDI---KGIRHVINYDLPQEIDEYVHRIGR 608
K+K L+ V + L+ G ++ + + ++ I
Sbjct: 3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRD 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,638,686
Number of extensions: 129729
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 77
Length of query: 693
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 601
Effective length of database: 1,144,436
Effective search space: 687806036
Effective search space used: 687806036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.1 bits)