BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16040
(358 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V9Z1|RM32_DROME 39S ribosomal protein L32, mitochondrial OS=Drosophila melanogaster
GN=mRpL32 PE=2 SV=1
Length = 195
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 57/216 (26%)
Query: 143 VAVTQISSVLTPKPVTKLSLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPR 202
+A+ +PK + SLK+L +LWAVPK RRS+E+R+ RK+G + WK L +
Sbjct: 30 LALAGFQHDHSPKSSQEFSLKQLIGDGLLWAVPKHRRSVEKRLKRKFGYPEYNWKPLREK 89
Query: 203 TDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDI 262
+L C ++C + V+ P+
Sbjct: 90 RNLRSC-----------------------LQCGHDHEMGVLCPF---------------- 110
Query: 263 VIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASE 322
CY K+ +ET +Q KI E LGL+PVDKEV+VLY+GEK S
Sbjct: 111 ------------------CYQKVLKETELMQSKIQETLGLDPVDKEVIVLYEGEKAEQST 152
Query: 323 EFSETHRVIEVEGERPPWFSKNLLQKTTQKPSDSTD 358
+ + R++E++ RP WF+KNLLQK+TQ+ S++ +
Sbjct: 153 DDLKNKRIVEMKKPRPMWFTKNLLQKSTQQLSETKE 188
>sp|Q04907|RM32_CAEEL Probable 39S ribosomal protein L32, mitochondrial OS=Caenorhabditis
elegans GN=C30C11.1 PE=3 SV=1
Length = 168
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 71/199 (35%)
Query: 156 PVTKLSLKELFDT-SILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYT 214
P+T S++E+ D SI++ VPK R S +++ RK+ ++L P +L C C
Sbjct: 35 PMTYGSVREMIDDFSIVFGVPKYRTSKPKKVTRKFS----FTRLLQPIDNLVTCPACSNI 90
Query: 215 HHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTIL 274
H S T+ CD
Sbjct: 91 HPSDTI---------------------------------------CDA------------ 99
Query: 275 FLFTGNCYAKIKEETTRLQDKIVEALGLNPV-----DKEVVVLYKGEKEHASEEFSETHR 329
CYAK+ + T+ ++ K+++ NP DKEV V ++GE + A + R
Sbjct: 100 ------CYAKVHQLTSEIKKKMMQ---YNPYVGEKQDKEVYVKFRGEPD-APAAVVKGKR 149
Query: 330 VIEVEGERPPWFSKNLLQK 348
V+E+E ERP WF K L++
Sbjct: 150 VLEIEKERPTWFKKLTLKE 168
>sp|Q2TBI6|RM32_BOVIN 39S ribosomal protein L32, mitochondrial OS=Bos taurus GN=MRPL32
PE=2 SV=1
Length = 188
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 276 LFTGNCYAKIKEETTRLQDKIVEALG--LNPVDKEVVVLYKGEKEHASEEFSETHRVIEV 333
+ G CY K+++ET ++ +I + G E VVLY GE E + R+IE
Sbjct: 121 VLCGYCYEKVRKETAEIRRQIGKQEGGPFKAPTVETVVLYSGE---TPSEHDQGKRIIER 177
Query: 334 EGERPPWFSKN 344
E +RP WF++N
Sbjct: 178 ERKRPSWFTQN 188
>sp|Q9DCI9|RM32_MOUSE 39S ribosomal protein L32, mitochondrial OS=Mus musculus GN=Mrpl32
PE=2 SV=1
Length = 187
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 276 LFTGNCYAKIKEETTRLQDKIVEALG--LNPVDKEVVVLYKGEKEHASEEFSETHRVIEV 333
+ G CY K+++ETT+++ +I G E +VLY GEK E + R++E
Sbjct: 120 VLCGYCYEKVRQETTKIRQQIGAQEGGPFRAPSVETMVLYTGEK---PSEKDQGKRIVER 176
Query: 334 EGERPPWFSKN 344
+RP WF++N
Sbjct: 177 NIKRPSWFTQN 187
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 166 FDTSILW-AVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKY 224
F SI W A PK RR++E R+ + K++ + ++ +C CG+ LCG
Sbjct: 70 FLDSIFWMAAPKNRRTIEVNRCRRRNPQ----KLIKIKNNIDICPECGHLKQKHVLCGYC 125
Query: 225 Y 225
Y
Sbjct: 126 Y 126
>sp|Q9BYC8|RM32_HUMAN 39S ribosomal protein L32, mitochondrial OS=Homo sapiens GN=MRPL32
PE=1 SV=1
Length = 188
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 281 CYAKIKEETTRLQDKIVEALGLNPVDK---EVVVLYKGEKEHASEEFSETHRVIEVEGER 337
CY K+ +ET ++ +I + G P E VVLY GE E + R+IE + +R
Sbjct: 126 CYEKVCKETAEIRRQIGKQEG-GPFKAPTIETVVLYTGE---TPSEQDQGKRIIERDRKR 181
Query: 338 PPWFSKN 344
P WF++N
Sbjct: 182 PSWFTQN 188
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 169 SILW-AVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKYY 225
SI W A PK RR++E R+ + K++ + ++ VC CG+ LC Y
Sbjct: 74 SIFWMAAPKNRRTIEVNRCRRRNPQ----KLIKVKNNIDVCPECGHLKQKHVLCAYCY 127
>sp|P25348|RM32_YEAST 54S ribosomal protein L32, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRPL32 PE=1
SV=1
Length = 183
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 163 KELF-DTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLC 221
K+ F + IL AVPKK+ S +++ + YG + KM+ L C +CG+ + TLC
Sbjct: 61 KDFFSNNGILLAVPKKKVSHQKKRQKLYGPGKKQLKMIH---HLNKCPSCGHYKRANTLC 117
>sp|Q7SH17|ACKA_NEUCR Probable acetate kinase OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=B12J7.040 PE=3 SV=3
Length = 469
Score = 35.4 bits (80), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 26/92 (28%)
Query: 261 DIVIQRNCIY----------NTILFLFTGNCYAKIKEETTRLQDKIVEA---LGLNPVDK 307
DI ++R C Y +F G I E++ RL+ ++E LG PVDK
Sbjct: 354 DIFVERICAYIGSYYVSLQGQVDALVFAGG----IGEKSDRLRAAVIEQVSCLGFGPVDK 409
Query: 308 EVVVLYKGEKEHASEEFSETHRVIEVEGERPP 339
E + EE ++H VIE+ PP
Sbjct: 410 EA------NETRVKEELDDSHDVIEIA---PP 432
>sp|Q5B3G6|ACKA_EMENI Probable acetate kinase OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN4914
PE=3 SV=2
Length = 469
Score = 35.4 bits (80), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 26/92 (28%)
Query: 261 DIVIQRNCIY----------NTILFLFTGNCYAKIKEETTRLQDKIVEA---LGLNPVDK 307
DI ++R C Y +F G I E++ RL+ ++E LG PVDK
Sbjct: 354 DIFVERICAYIGSYYVSLQGQVDALVFAGG----IGEKSDRLRAAVIEQVSCLGFGPVDK 409
Query: 308 EVVVLYKGEKEHASEEFSETHRVIEVEGERPP 339
E + EE ++H VIE+ PP
Sbjct: 410 EA------NETRVKEELDDSHDVIEIA---PP 432
>sp|Q06374|CG1_COLGL Putative G1/S-specific cyclin OS=Colletotrichum gloeosporioides
GN=CYC1 PE=2 SV=1
Length = 245
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 10/53 (18%)
Query: 85 ELFDTSILWAVPKKVEDAHAENRPDSLQHMCKMIDVSSDQVPNAMFSNSSLFF 137
+F + LW K VED D + +C+++D VP+ M+ NS+LFF
Sbjct: 109 RVFSCAALWIASKFVEDK------DRVPSVCRVLDY----VPSGMYCNSALFF 151
>sp|Q2QZ80|LAC21_ORYSJ Laccase-21 OS=Oryza sativa subsp. japonica GN=LAC21 PE=2 SV=1
Length = 583
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 124 QVPNAMFSNSSLFFISDFNVAVTQISSVLTPKPVTKLSLKELFDTSILWAVPKKRRSLER 183
QV NA +N F +S + V I + T KP+T + P + L
Sbjct: 230 QVINAGLTNDMFFAVSGHRLTVVGIDARYT-KPLT---------VEYIMIAPGQTMDLLL 279
Query: 184 RMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLL 240
NR GSK + RT +T+ + + + T +YY+ FP++L
Sbjct: 280 EANRSLGSKSNSRYYMAARTFITLPVPIPFNNSTATAVVEYYTGDSGAGPPDFPAVL 336
>sp|Q9S775|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis
thaliana GN=PKL PE=1 SV=1
Length = 1384
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 174 VPKKRRSLER-RMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKYYSLSISRV 232
VPKK R+ E+ + +K+ + T+L CNTC Y H+K L S+
Sbjct: 29 VPKKDRTFEQVEAIVRTDAKENACQACGESTNLVSCNTCTYAFHAKCLVPPLKDASVENW 88
Query: 233 KC 234
+C
Sbjct: 89 RC 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,657,760
Number of Sequences: 539616
Number of extensions: 5060023
Number of successful extensions: 12860
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 12847
Number of HSP's gapped (non-prelim): 22
length of query: 358
length of database: 191,569,459
effective HSP length: 119
effective length of query: 239
effective length of database: 127,355,155
effective search space: 30437882045
effective search space used: 30437882045
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)