Query psy16040
Match_columns 358
No_of_seqs 154 out of 243
Neff 2.3
Searched_HMMs 29240
Date Fri Aug 16 19:21:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjr_Z 50S ribosomal protein L 99.6 4.1E-16 1.4E-20 117.2 2.8 46 171-223 3-48 (60)
2 3v2d_5 50S ribosomal protein L 99.6 4.1E-16 1.4E-20 117.3 2.7 46 171-223 3-48 (60)
3 3r8s_0 50S ribosomal protein L 99.4 8E-14 2.7E-18 103.4 2.6 43 173-222 1-44 (56)
4 3bbo_2 Ribosomal protein L32; 97.3 7.7E-05 2.6E-09 56.4 1.4 24 172-200 1-24 (57)
5 1zt2_A DNA primase small subun 77.5 2.6 8.9E-05 40.2 5.1 37 276-317 140-176 (330)
6 2gnr_A Conserved hypothetical 63.9 3.2 0.00011 34.9 2.1 41 204-244 46-88 (145)
7 3irb_A Uncharacterized protein 47.0 8.6 0.00029 32.0 2.0 40 204-243 46-87 (145)
8 1wii_A Hypothetical UPF0222 pr 40.0 15 0.00051 29.1 2.2 16 200-215 18-33 (85)
9 3n40_P P62 envelope glycoprote 37.4 17 0.00058 36.1 2.6 70 170-251 46-119 (401)
10 2cr8_A MDM4 protein; ZF-ranbp 32.7 25 0.00085 26.4 2.3 36 204-239 10-52 (53)
11 2apo_B Ribosome biogenesis pro 29.7 22 0.00075 26.8 1.6 17 204-221 5-21 (60)
12 2aus_D NOP10, ribosome biogene 28.2 22 0.00074 26.9 1.3 17 204-221 4-20 (60)
13 4efo_A Serine/threonine-protei 27.9 38 0.0013 27.1 2.8 27 289-317 36-62 (94)
14 1v33_A DNA primase small subun 25.9 60 0.0021 31.3 4.3 37 276-317 132-168 (366)
15 2gvi_A Conserved hypothetical 25.8 18 0.0006 31.6 0.5 16 204-219 171-186 (204)
16 3j20_W 30S ribosomal protein S 25.5 31 0.0011 26.4 1.8 28 206-240 16-43 (63)
17 2con_A RUH-035 protein, NIN on 25.0 29 0.00099 27.3 1.6 33 201-244 26-58 (79)
18 1qxf_A GR2, 30S ribosomal prot 24.8 32 0.0011 26.6 1.8 29 206-241 8-36 (66)
19 3u5c_b RP61, YS20, 40S ribosom 24.7 33 0.0011 27.5 1.9 30 205-241 34-63 (82)
20 3rnv_A HC-Pro, helper componen 23.1 42 0.0014 29.6 2.4 23 283-305 59-81 (158)
21 2xzm_6 RPS27E; ribosome, trans 22.8 36 0.0012 27.2 1.8 30 206-242 33-62 (81)
22 2dar_A PDZ and LIM domain prot 22.6 61 0.0021 23.7 2.9 13 204-216 24-36 (90)
23 4esj_A Type-2 restriction enzy 22.5 25 0.00085 33.2 0.9 13 206-218 35-47 (257)
24 3plv_C 66 kDa U4/U6.U5 small n 22.2 59 0.002 20.3 2.2 15 287-305 5-19 (21)
25 1pft_A TFIIB, PFTFIIBN; N-term 22.1 32 0.0011 23.5 1.2 11 203-213 3-13 (50)
26 2o9s_A Ponsin; SH3 domain, sig 20.1 60 0.002 22.4 2.3 43 301-343 1-44 (67)
No 1
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=99.58 E-value=4.1e-16 Score=117.22 Aligned_cols=46 Identities=30% Similarity=0.499 Sum_probs=43.0
Q ss_pred EeecCCCCCChhHhhhccCCCCCCCccccccCCCcccCCCCCCcccCcccccc
Q psy16040 171 LWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGK 223 (358)
Q Consensus 171 LwAVPKKRrSkERRRkRR~g~pk~~~KLLkPKtNLv~CPqCGhlKl~HrLC~~ 223 (358)
||||||+|+|++||++||+ +||+..| +|+.||+||+++++|++|+.
T Consensus 3 lMAVPKrK~Sksrr~~RRs-----h~kl~~p--~l~~c~~cG~~~~pH~vc~~ 48 (60)
T 2zjr_Z 3 KHPVPKKKTSKSKRDMRRS-----HHALTAP--NLTECPQCHGKKLSHHICPN 48 (60)
T ss_dssp CCSCCSSCCCTTHHHHHTT-----TCCCCCC--CCEECTTTCCEECTTBCCTT
T ss_pred ccccCCCCCChHHhhhhcc-----cccccCC--CceECCCCCCEeCCceEcCC
Confidence 6999999999999999999 4799877 99999999999999999965
No 2
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=99.58 E-value=4.1e-16 Score=117.34 Aligned_cols=46 Identities=30% Similarity=0.499 Sum_probs=43.0
Q ss_pred EeecCCCCCChhHhhhccCCCCCCCccccccCCCcccCCCCCCcccCcccccc
Q psy16040 171 LWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGK 223 (358)
Q Consensus 171 LwAVPKKRrSkERRRkRR~g~pk~~~KLLkPKtNLv~CPqCGhlKl~HrLC~~ 223 (358)
||||||+|+|++||++||+ +||+..| +|+.||+||+++++|++|+.
T Consensus 3 ~MAVPKrK~Sksr~~~RRs-----h~kl~~p--~l~~c~~cGe~~~~H~vc~~ 48 (60)
T 3v2d_5 3 KHPVPKKKTSKARRDARRS-----HHALTPP--TLVPCPECKAMKPPHTVCPE 48 (60)
T ss_dssp CCCCCSSCCCHHHHHHHGG-----GCCCCCC--CCEECTTTCCEECTTSCCTT
T ss_pred ccccCcCcCChhhcchhhc-----cccccCC--ceeECCCCCCeecceEEcCC
Confidence 6899999999999999998 4899888 99999999999999999954
No 3
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=99.39 E-value=8e-14 Score=103.42 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=40.2
Q ss_pred ecCCCCCChhHhhhccCCCCCCCccccc-cCCCcccCCCCCCcccCccccc
Q psy16040 173 AVPKKRRSLERRMNRKYGSKDQVWKMLM-PRTDLTVCNTCGYTHHSKTLCG 222 (358)
Q Consensus 173 AVPKKRrSkERRRkRR~g~pk~~~KLLk-PKtNLv~CPqCGhlKl~HrLC~ 222 (358)
||||+|+|++||++||+ +|++.. | +|+.||+||+++++|++|+
T Consensus 1 AVPKrK~Sksrr~~RRs-----h~kl~~~p--~l~~c~~cGe~~l~H~vc~ 44 (56)
T 3r8s_0 1 AVQQNKPTRSKRGMRRS-----HDALTAVT--SLSVDKTSGEKHLRHHITA 44 (56)
T ss_dssp CCCSSCCCHHHHHHHGG-----GCCCCCCC--CEEECTTTCCEEETTBCCT
T ss_pred CCCCCcCChhhhhhhhc-----hhhcccCC--ceeECCCCCCeecccEECC
Confidence 89999999999999998 478887 7 9999999999999999993
No 4
>3bbo_2 Ribosomal protein L32; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=97.25 E-value=7.7e-05 Score=56.38 Aligned_cols=24 Identities=46% Similarity=0.646 Sum_probs=20.6
Q ss_pred eecCCCCCChhHhhhccCCCCCCCccccc
Q psy16040 172 WAVPKKRRSLERRMNRKYGSKDQVWKMLM 200 (358)
Q Consensus 172 wAVPKKRrSkERRRkRR~g~pk~~~KLLk 200 (358)
|||||||+|++|++.|+. .||.-.
T Consensus 1 MAVPKKrtSkskk~~Rk~-----~WK~ka 24 (57)
T 3bbo_2 1 MAVPKKRTSIYKKRIRKN-----IWKKKG 24 (57)
T ss_dssp CCCCSSCCCTTHHHHTTS-----TTCCCT
T ss_pred CCCCCCccchhHHHHHHH-----HHHHHH
Confidence 899999999999999998 476433
No 5
>1zt2_A DNA primase small subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} SCOP: d.264.1.1
Probab=77.46 E-value=2.6 Score=40.19 Aligned_cols=37 Identities=27% Similarity=0.555 Sum_probs=31.8
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHcCCCCCcceeEEEeCCCC
Q psy16040 276 LFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEK 317 (358)
Q Consensus 276 ~~~g~Cy~kik~eT~~iq~ki~~~lgl~p~d~evvVlY~ge~ 317 (358)
+.|..|.+.+|++...|-+-+.+.+|++. .+.|.|-.
T Consensus 140 ~ic~~cl~~~k~~a~klld~L~~dFGf~~-----~ivFSG~R 176 (330)
T 1zt2_A 140 EMTSECIKRGLEQTRNLVEILEDDFGLKP-----KVYFSGNR 176 (330)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTTCCCC-----EEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCe-----eEEEeCCC
Confidence 45789999999999999999999999998 45899943
No 6
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=63.90 E-value=3.2 Score=34.90 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=33.4
Q ss_pred CcccCCCCCCcc-cCccccccccccccceeccC-CCcceeeec
Q psy16040 204 DLTVCNTCGYTH-HSKTLCGKYYSLSISRVKCS-FPSLLKVMY 244 (358)
Q Consensus 204 NLv~CPqCGhlK-l~HrLC~~~fsla~t~~s~s-g~S~lkv~~ 244 (358)
-+..|..||+.. .+...|++|.+....-+..| |.+.|.-+.
T Consensus 46 ~~~rC~~CG~~~fPPr~~Cp~C~s~~~e~v~ls~g~GtV~S~T 88 (145)
T 2gnr_A 46 IGSKCSKCGRIFVPARSYCEHCFVKIENYVEINKDEAYVDSYT 88 (145)
T ss_dssp EEEECTTTCCEEESCCSEETTTTEECCEEEECCGGGCEEEEEE
T ss_pred EEEEECCCCcEEeCCCCCCCCCCCCccEEEEccCCcEEEEEEE
Confidence 567999999975 56889999999988888888 888776444
No 7
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=46.95 E-value=8.6 Score=32.02 Aligned_cols=40 Identities=13% Similarity=0.268 Sum_probs=29.8
Q ss_pred CcccCCCCCCccc-CccccccccccccceeccC-CCcceeee
Q psy16040 204 DLTVCNTCGYTHH-SKTLCGKYYSLSISRVKCS-FPSLLKVM 243 (358)
Q Consensus 204 NLv~CPqCGhlKl-~HrLC~~~fsla~t~~s~s-g~S~lkv~ 243 (358)
-+..|+.||+..- +...|++|.|....-+..| |.+.|.-+
T Consensus 46 ~~~rC~~CG~~~~PPr~~Cp~C~s~~~~~ve~s~G~GtV~S~ 87 (145)
T 3irb_A 46 IGSKCSKCGRIFVPARSYCEHCFVKIENYVEINKDEAYVDSY 87 (145)
T ss_dssp EEEECTTTCCEEESCCSEETTTTEECCEEEECCGGGCEEEEE
T ss_pred EEEEeCCCCcEEcCchhhCcCCCCCceeeeeecCCceEEEEE
Confidence 4679999998765 5788999999887765543 66666543
No 8
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=40.04 E-value=15 Score=29.12 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=12.8
Q ss_pred ccCCCcccCCCCCCcc
Q psy16040 200 MPRTDLTVCNTCGYTH 215 (358)
Q Consensus 200 kPKtNLv~CPqCGhlK 215 (358)
.+....-.||.|||.+
T Consensus 18 ~~L~t~F~CPfCnh~~ 33 (85)
T 1wii_A 18 GTLETQFTCPFCNHEK 33 (85)
T ss_dssp CCCSSCCCCTTTCCSS
T ss_pred CCCCCeEcCCCCCCCC
Confidence 3445889999999986
No 9
>3n40_P P62 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 3n44_B* 3n41_B* 3n42_B* 3n43_B* 2xfb_B 3n44_A* 3n41_A* 3n42_A* 3n43_A*
Probab=37.36 E-value=17 Score=36.13 Aligned_cols=70 Identities=23% Similarity=0.315 Sum_probs=44.2
Q ss_pred eEeecCCCCCChhHhhhccCCCCCCCccccccCCCcccCCCCCCcccCccccccccc-cccc-eeccCCCcceeeec--c
Q psy16040 170 ILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKYYS-LSIS-RVKCSFPSLLKVMY--P 245 (358)
Q Consensus 170 ILwAVPKKRrSkERRRkRR~g~pk~~~KLLkPKtNLv~CPqCGhlKl~HrLC~~~fs-la~t-~~s~sg~S~lkv~~--~ 245 (358)
.|-||=+-+ .||++|....-.+.+|+..| =|-.|+.||+ ++-| || .||- +-+-+-++.|+|-- -
T Consensus 46 LL~a~l~C~---~rr~kRs~~~~F~~Yk~T~P--Y~a~C~~C~~----g~~C---~SPIaIE~V~~ea~DG~lrIQ~SaQ 113 (401)
T 3n40_P 46 LLQASLTCS---PHRQRESTKDNFNVYKATRP--YLAHCPDCGE----GHSC---HSPVALERIRNEATDGTLKIQVSLQ 113 (401)
T ss_dssp HHHHHTCCC---CSSCSSCCTTCCCGGGTBCC--CCEEESBSST----TCCE---EETTCEEEEECCCTTCCEEEEEEEE
T ss_pred HHHHHccCC---CcCcccchhhhhhhhhccCC--eEEECCcCCC----CCcc---CCcceeeehhccCCCceEEEEEeee
Confidence 355776655 33334444333345799999 9999999997 3457 54 3444 55666677776654 7
Q ss_pred Cccccc
Q psy16040 246 YGLTTN 251 (358)
Q Consensus 246 ~pl~q~ 251 (358)
|||.++
T Consensus 114 ~Gl~~s 119 (401)
T 3n40_P 114 IGIKTD 119 (401)
T ss_dssp EEECTT
T ss_pred eccccC
Confidence 777754
No 10
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=32.71 E-value=25 Score=26.40 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=27.0
Q ss_pred CcccCCCCCCcccC-ccccccccccccc------eeccCCCcc
Q psy16040 204 DLTVCNTCGYTHHS-KTLCGKYYSLSIS------RVKCSFPSL 239 (358)
Q Consensus 204 NLv~CPqCGhlKl~-HrLC~~~fsla~t------~~s~sg~S~ 239 (358)
+.=.|+.|+++..+ ++-|.+|+.+--. -+.-||+|+
T Consensus 10 D~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlpd~~k~~~~~~~~ 52 (53)
T 2cr8_A 10 DEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTHSGPSS 52 (53)
T ss_dssp CCEECSSSCCEECSSCCBCTTTCCBCCCCCCCCCCCSCSSSCC
T ss_pred ceeecccccccCCCccchhHHHHHhhcccCCCcccCccCCCCC
Confidence 56679999999988 9999888887655 344555543
No 11
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=29.69 E-value=22 Score=26.82 Aligned_cols=17 Identities=24% Similarity=0.808 Sum_probs=14.0
Q ss_pred CcccCCCCCCcccCcccc
Q psy16040 204 DLTVCNTCGYTHHSKTLC 221 (358)
Q Consensus 204 NLv~CPqCGhlKl~HrLC 221 (358)
.|..|++||.+-+.+ +|
T Consensus 5 ~mr~C~~CgvYTLk~-~C 21 (60)
T 2apo_B 5 RMKKCPKCGLYTLKE-IC 21 (60)
T ss_dssp CCEECTTTCCEESSS-BC
T ss_pred hceeCCCCCCEeccc-cC
Confidence 789999999999854 45
No 12
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=28.24 E-value=22 Score=26.93 Aligned_cols=17 Identities=29% Similarity=0.722 Sum_probs=14.0
Q ss_pred CcccCCCCCCcccCcccc
Q psy16040 204 DLTVCNTCGYTHHSKTLC 221 (358)
Q Consensus 204 NLv~CPqCGhlKl~HrLC 221 (358)
.|..|++||.+-+ .-.|
T Consensus 4 ~mr~C~~Cg~YTL-k~~C 20 (60)
T 2aus_D 4 RIRKCPKCGRYTL-KETC 20 (60)
T ss_dssp CCEECTTTCCEES-SSBC
T ss_pred cceECCCCCCEEc-cccC
Confidence 6889999999988 4456
No 13
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=27.90 E-value=38 Score=27.09 Aligned_cols=27 Identities=15% Similarity=0.434 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCCCCcceeEEEeCCCC
Q psy16040 289 TTRLQDKIVEALGLNPVDKEVVVLYKGEK 317 (358)
Q Consensus 289 T~~iq~ki~~~lgl~p~d~evvVlY~ge~ 317 (358)
...++++|.++.|..|..+| .||+|+.
T Consensus 36 v~~~ke~V~eqTgIp~~~Q~--LL~eg~~ 62 (94)
T 4efo_A 36 ATIFHELVYKQTKIISSNQE--LIYEGRR 62 (94)
T ss_dssp HHHHHHHHHHHHCCCGGGEE--EEETTEE
T ss_pred HHHHHHHHHHHhCCCHHHHH--HHhCCCc
Confidence 35788999999999999998 8999943
No 14
>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A*
Probab=25.93 E-value=60 Score=31.29 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=33.0
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHcCCCCCcceeEEEeCCCC
Q psy16040 276 LFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEK 317 (358)
Q Consensus 276 ~~~g~Cy~kik~eT~~iq~ki~~~lgl~p~d~evvVlY~ge~ 317 (358)
..|..|...+++++..|-+.+.+.+|++. +.++|.| .
T Consensus 132 ~iC~kC~~~~~~a~~~l~~~L~~dFGf~~----i~~vfSG-R 168 (366)
T 1v33_A 132 TVCPICLNDAKEIVRDTVIILREELGFND----IHIIYSG-R 168 (366)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCCCC----EEEEECS-S
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCce----eEEEEeC-C
Confidence 46899999999999999999999999954 7789999 5
No 15
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=25.82 E-value=18 Score=31.65 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=13.9
Q ss_pred CcccCCCCCCcccCcc
Q psy16040 204 DLTVCNTCGYTHHSKT 219 (358)
Q Consensus 204 NLv~CPqCGhlKl~Hr 219 (358)
+.+.|+.|||....++
T Consensus 171 ~~~~C~~CGE~~~~~~ 186 (204)
T 2gvi_A 171 AKVRCDVCGEYTYEAD 186 (204)
T ss_dssp CEEECTTTCCEEEGGG
T ss_pred CceECCCCCCchhhcc
Confidence 5789999999998875
No 16
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.53 E-value=31 Score=26.41 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=22.1
Q ss_pred ccCCCCCCcccCccccccccccccceeccCCCcce
Q psy16040 206 TVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLL 240 (358)
Q Consensus 206 v~CPqCGhlKl~HrLC~~~fsla~t~~s~sg~S~l 240 (358)
+.||.|++. ..+||.|.+.+.|.+=|++
T Consensus 16 VkCp~C~~~-------q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 16 VKCIDCGNE-------QIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp EECSSSCCE-------EEEESSCSSCEECSSSCCE
T ss_pred EECCCCCCe-------eEEEecCCeEEEccCcCCE
Confidence 689999975 2379999998888776654
No 17
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=25.01 E-value=29 Score=27.27 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=22.9
Q ss_pred cCCCcccCCCCCCcccCccccccccccccceeccCCCcceeeec
Q psy16040 201 PRTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMY 244 (358)
Q Consensus 201 PKtNLv~CPqCGhlKl~HrLC~~~fsla~t~~s~sg~S~lkv~~ 244 (358)
+..+-.-||.||+.-+...-| +-...+.+++|.
T Consensus 26 ~~~~k~FCp~CGn~TL~Rvsv-----------svd~~G~~~~hl 58 (79)
T 2con_A 26 SDMNRVFCGHCGNKTLKKVSV-----------TINDDGTLHMHF 58 (79)
T ss_dssp SCSSCCSCSSSCCSCCEEEEC-----------BCCSSCCCBCCC
T ss_pred CCcccccccccCcccceEEEE-----------EECCCCcEEEec
Confidence 335677899999987777777 334446666665
No 18
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=24.81 E-value=32 Score=26.59 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=21.9
Q ss_pred ccCCCCCCcccCccccccccccccceeccCCCccee
Q psy16040 206 TVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLK 241 (358)
Q Consensus 206 v~CPqCGhlKl~HrLC~~~fsla~t~~s~sg~S~lk 241 (358)
+.||.|++. ..+||-|.+.+.|.+=+++=
T Consensus 8 VKCp~C~ni-------q~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 8 VKCPDCEHE-------QVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EECTTTCCE-------EEEESSCSSCEECSSSCCEE
T ss_pred EECCCCCCc-------eEEEecCceEEEcccCCCEE
Confidence 679999875 23799999988887766543
No 19
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=24.69 E-value=33 Score=27.50 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=23.5
Q ss_pred cccCCCCCCcccCccccccccccccceeccCCCccee
Q psy16040 205 LTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLK 241 (358)
Q Consensus 205 Lv~CPqCGhlKl~HrLC~~~fsla~t~~s~sg~S~lk 241 (358)
-+.||.|++. ..+||.|.+.+.|.+=|++=
T Consensus 34 ~VkCp~C~~~-------q~VFSha~t~V~C~~Cg~~L 63 (82)
T 3u5c_b 34 DVKCPGCLNI-------TTVFSHAQTAVTCESCSTIL 63 (82)
T ss_dssp EEECTTSCSC-------EEEESBCSSCCCCSSSCCCC
T ss_pred EEECCCCCCe-------eEEEecCCeEEEccccCCEE
Confidence 3689999975 34799999999888776653
No 20
>3rnv_A HC-Pro, helper component proteinase; cysteine protease, proteolysis, hydrolase; 2.00A {Turnip mosaic virus}
Probab=23.10 E-value=42 Score=29.55 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCC
Q psy16040 283 AKIKEETTRLQDKIVEALGLNPV 305 (358)
Q Consensus 283 ~kik~eT~~iq~ki~~~lgl~p~ 305 (358)
+..|..|+.++|+++++||-=|-
T Consensus 59 ~~ak~Ftk~Vrd~~v~~LG~WPt 81 (158)
T 3rnv_A 59 SQAKEFTKVVRDKLVGELGKWPT 81 (158)
T ss_dssp GGHHHHHHHHHHTHHHHHCSSCB
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 34688999999999999996554
No 21
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=22.84 E-value=36 Score=27.18 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=23.6
Q ss_pred ccCCCCCCcccCccccccccccccceeccCCCcceee
Q psy16040 206 TVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKV 242 (358)
Q Consensus 206 v~CPqCGhlKl~HrLC~~~fsla~t~~s~sg~S~lkv 242 (358)
+.||.|++. ..+||.|.|.+.|.+=+++=+
T Consensus 33 VkCp~C~n~-------q~VFShA~t~V~C~~Cg~~L~ 62 (81)
T 2xzm_6 33 VKCAQCQNI-------QMIFSNAQSTIICEKCSAILC 62 (81)
T ss_dssp EECSSSCCE-------EEEETTCSSCEECSSSCCEEE
T ss_pred eECCCCCCe-------eEEEecCccEEEccCCCCEEe
Confidence 589999975 348999999999888776543
No 22
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.60 E-value=61 Score=23.72 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=9.4
Q ss_pred CcccCCCCCCccc
Q psy16040 204 DLTVCNTCGYTHH 216 (358)
Q Consensus 204 NLv~CPqCGhlKl 216 (358)
....|..||+...
T Consensus 24 ~~~~C~~C~~~I~ 36 (90)
T 2dar_A 24 RTPMCAHCNQVIR 36 (90)
T ss_dssp CCCBBSSSCCBCC
T ss_pred CCCCCccCCCEec
Confidence 4567999998653
No 23
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=22.52 E-value=25 Score=33.18 Aligned_cols=13 Identities=23% Similarity=0.698 Sum_probs=10.2
Q ss_pred ccCCCCCCcccCc
Q psy16040 206 TVCNTCGYTHHSK 218 (358)
Q Consensus 206 v~CPqCGhlKl~H 218 (358)
.-||+||+..+.|
T Consensus 35 ~yCPnCG~~~l~~ 47 (257)
T 4esj_A 35 SYCPNCGNNPLNH 47 (257)
T ss_dssp CCCTTTCCSSCEE
T ss_pred CcCCCCCChhhhh
Confidence 4699999987744
No 24
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=22.17 E-value=59 Score=20.27 Aligned_cols=15 Identities=47% Similarity=0.742 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q psy16040 287 EETTRLQDKIVEALGLNPV 305 (358)
Q Consensus 287 ~eT~~iq~ki~~~lgl~p~ 305 (358)
|||+.+| .++||.|.
T Consensus 5 EEtnk~r----~~lGLkpl 19 (21)
T 3plv_C 5 EETNELR----ASLGLKLI 19 (26)
T ss_dssp HHHHHHH----HHTTCCCC
T ss_pred HHHHHHH----HHcCCCCC
Confidence 6776655 57899885
No 25
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.15 E-value=32 Score=23.46 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=8.9
Q ss_pred CCcccCCCCCC
Q psy16040 203 TDLTVCNTCGY 213 (358)
Q Consensus 203 tNLv~CPqCGh 213 (358)
+++..||.||.
T Consensus 3 ~~~~~CP~C~~ 13 (50)
T 1pft_A 3 NKQKVCPACES 13 (50)
T ss_dssp SSCCSCTTTSC
T ss_pred CccEeCcCCCC
Confidence 35778999997
No 26
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=20.10 E-value=60 Score=22.39 Aligned_cols=43 Identities=16% Similarity=0.420 Sum_probs=25.4
Q ss_pred CCCCCcceeEEEeCCCCCccccc-cccCceeEeccCCCCCCCch
Q psy16040 301 GLNPVDKEVVVLYKGEKEHASEE-FSETHRVIEVEGERPPWFSK 343 (358)
Q Consensus 301 gl~p~d~evvVlY~ge~~~~~~e-~~~~~rvie~~~eRP~wFsk 343 (358)
|++|....++++|+=+..+..+= |.++..|.-++.....|+.-
T Consensus 1 g~~p~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g 44 (67)
T 2o9s_A 1 GIDPFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEG 44 (67)
T ss_dssp CCSTTSEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEE
T ss_pred CCCCCCEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEE
Confidence 78898889999987766443332 44444433333334556543
Done!