RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16040
(358 letters)
>gnl|CDD|201972 pfam01783, Ribosomal_L32p, Ribosomal L32p protein family.
Length = 56
Score = 36.5 bits (85), Expect = 0.001
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 173 AVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCG--KYY 225
AVPK++ S R+ R+ WK+ P +L C CG +C YY
Sbjct: 1 AVPKRKTSKSRKRKRR-----AHWKLKAP--NLVECPNCGELKLPHRVCPSCGYY 48
>gnl|CDD|223410 COG0333, RpmF, Ribosomal protein L32 [Translation, ribosomal
structure and biogenesis].
Length = 57
Score = 30.7 bits (70), Expect = 0.12
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 173 AVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKY 224
AVPK++ S RR R+ + P L+VC CG +C K
Sbjct: 2 AVPKRKTSKSRRRMRRSH-----DALKAPT--LSVCPNCGEYKLPHRVCLKC 46
>gnl|CDD|233239 TIGR01031, rpmF_bact, ribosomal protein L32. This protein
describes bacterial ribosomal protein L32. The noise
cutoff is set low enough to include the equivalent
protein from mitochondria and chloroplasts. No related
proteins from the Archaea nor from the eukaryotic
cytosol are detected by this model. This model is a
fragment model; the putative L32 of some species shows
similarity only toward the N-terminus [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 55
Score = 30.0 bits (68), Expect = 0.23
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 174 VPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGK--YY 225
VPK++ S R+ RK S D K+ P L VC CG +C YY
Sbjct: 1 VPKRKTSKSRK--RKRRSHD--AKLTAP--TLVVCPNCGEFKLPHRVCPSCGYY 48
>gnl|CDD|237164 PRK12664, PRK12664, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 527
Score = 30.5 bits (69), Expect = 1.5
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 242 VMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTILF------LFTGNCYAKI 285
+ Y L NL Y + +Q I T L LF G K+
Sbjct: 396 MFNSYLLFYNLPSFVYTLKSVALQLGLILGTTLLFICLRKLFLGRINFKM 445
>gnl|CDD|173895 cd00517, ATPS, ATP-sulfurylase. ATP-sulfurylase (ATPS), also known
as sulfate adenylate transferase, catalyzes the transfer
of an adenylyl group from ATP to sulfate, forming
adenosine 5'-phosphosulfate (APS). This reaction is
generally accompanied by a further reaction, catalyzed
by APS kinase, in which APS is phosphorylated to yield
3'-phospho-APS (PAPS). In some organisms the APS kinase
is a separate protein, while in others it is
incorporated with ATP sulfurylase in a bifunctional
enzyme that catalyzes both reactions. In bifunctional
proteins, the domain that performs the kinase activity
can be attached at the N-terminal end of the sulfurylase
unit or at the C-terminal end, depending on the
organism. While the reaction is ubiquitous among
organisms, the physiological role of the reaction
varies. In some organisms it is used to generate APS
from sulfate and ATP, while in others it proceeds in the
opposite direction to generate ATP from APS and
pyrophosphate. ATP sulfurylase can be a monomer, a
homodimer, or a homo-oligomer, depending on the
organism. ATPS belongs to a large superfamily of
nucleotidyltransferases that includes pantothenate
synthetase (PanC), phosphopantetheine
adenylyltransferase (PPAT), and the amino-acyl tRNA
synthetases. The enzymes of this family are structurally
similar and share a dinucleotide-binding domain.
Length = 353
Score = 30.3 bits (69), Expect = 1.6
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 12/67 (17%)
Query: 288 ETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASEEFSETH-----------RVIEVEGE 336
+ + K+ LG+ PV ASE+ R + EGE
Sbjct: 276 DAQEIFKKLAPELGIEPVPFREAAYCPKCDGMASEDTCPHGEDFLNISGTKLRKMLREGE 335
Query: 337 RPP-WFS 342
+PP WF
Sbjct: 336 KPPEWFM 342
>gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional.
Length = 237
Score = 29.5 bits (67), Expect = 2.3
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 271 NTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASEEF 324
+L + TG I+ I ALGL VV ++ GE A ++F
Sbjct: 2 KPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAPDDF 55
>gnl|CDD|180247 PRK05767, rpl44e, 50S ribosomal protein L44e; Validated.
Length = 92
Score = 27.2 bits (61), Expect = 4.5
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 18/56 (32%)
Query: 177 KRRSL---ERRMNRK---YGSK-------DQVWKMLMPRTDLT-VCNTCGYTHHSK 218
KR L +R+ RK YG K + K + DL C CG H +
Sbjct: 29 KRSELKWGQRQYRRKTIGYGGKFSPVPGGAKPTK----KVDLRYRCTECGKAHTRE 80
>gnl|CDD|227084 COG4741, COG4741, Predicted secreted endonuclease distantly related
to archaeal Holliday junction resolvase [Nucleotide
transport and metabolism].
Length = 175
Score = 28.2 bits (63), Expect = 5.0
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 177 KRRSLERRMNRKYGSKDQVWKM 198
++ ER +N K++ WK+
Sbjct: 43 QKAERERLVNEAQARKEEEWKL 64
>gnl|CDD|237038 PRK12286, rpmF, 50S ribosomal protein L32; Reviewed.
Length = 57
Score = 26.0 bits (58), Expect = 6.4
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 173 AVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYT---HHSKTLCGKY 224
AVPK++ S R+ R+ + +K+ P L C CG H CG Y
Sbjct: 2 AVPKRKTSKSRKRKRR--AH---FKLKAP--GLVECPNCGEPKLPHRVCPSCGYY 49
>gnl|CDD|220229 pfam09418, DUF2009, Protein of unknown function (DUF2009). This is
a eukaryotic family of proteins with unknown function.
Length = 458
Score = 28.1 bits (63), Expect = 7.8
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 10/32 (31%)
Query: 123 DQVPNAMFSNSSLFFISDFNVAVTQISSVLTP 154
D VPNA LFFI + TQ+ +L P
Sbjct: 344 DAVPNA------LFFIDKY----TQVPRILIP 365
>gnl|CDD|197822 smart00661, RPOL9, RNA polymerase subunit 9.
Length = 52
Score = 25.4 bits (56), Expect = 8.2
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 198 MLMPRTD----LTVCNTCGYTHHSKT 219
ML PR VC CGY ++
Sbjct: 9 MLYPREGKEKRRFVCRKCGYEEPAEQ 34
>gnl|CDD|214377 CHL00152, rpl32, ribosomal protein L32; Validated.
Length = 53
Score = 25.4 bits (56), Expect = 9.1
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 173 AVPKKRRSLERRMNRKYGSKDQVWK 197
AVPKKR S ++ RK +WK
Sbjct: 2 AVPKKRTSKSKKRIRK-----NIWK 21
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.391
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,233,526
Number of extensions: 1587147
Number of successful extensions: 1283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1279
Number of HSP's successfully gapped: 16
Length of query: 358
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 260
Effective length of database: 6,590,910
Effective search space: 1713636600
Effective search space used: 1713636600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.0 bits)