RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16040
         (358 letters)



>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli
           [TaxId: 562]}
          Length = 56

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 173 AVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTH--HSKTLCGKY 224
           AV + + +  +R  R+          L   T L+V  T G  H  H  T  G Y
Sbjct: 1   AVQQNKPTRSKRGMRRSHDA------LTAVTSLSVDKTSGEKHLRHHITADGYY 48


>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus
           thermophilus [TaxId: 274]}
          Length = 59

 Score = 30.0 bits (68), Expect = 0.054
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 9/55 (16%)

Query: 173 AVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGK--YY 225
            VPKK+ S  RR  R+         +  P   L  C  C       T+C +  YY
Sbjct: 4   PVPKKKTSKARRDARR-----SHHALTPP--TLVPCPECKAMKPPHTVCPECGYY 51


>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 58

 Score = 28.8 bits (65), Expect = 0.11
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 173 AVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGK--YY 225
            VPKK+ S  +R  R+         +  P  +LT C  C     S  +C    YY
Sbjct: 4   PVPKKKTSKSKRDMRR-----SHHALTAP--NLTECPQCHGKKLSHHICPNCGYY 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,259,097
Number of extensions: 56618
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 4
Length of query: 358
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,226,816
Effective search space: 333693952
Effective search space used: 333693952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)