RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16044
(436 letters)
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 228 bits (584), Expect = 5e-73
Identities = 82/240 (34%), Positives = 120/240 (50%), Gaps = 17/240 (7%)
Query: 14 CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
CG I + R++ G+++I +WPWQ+SLQ L H CG LI P+ V+TAAH
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWR--HTCGGTLITPNHVLTAAH 58
Query: 74 CIHNDIFSLPIPELWTAVLGDWDR-TEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKL 130
CI N + LG + E+E + + V+ I VHE+++ +DIAL+KL
Sbjct: 59 CISN-------TLTYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKL 111
Query: 131 SRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISV 190
+ D ++ CL + C TGWGR+ G + ++L+Q P+ + +
Sbjct: 112 AETVELGDT-IQVACLPSEGS-LLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYAT 169
Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG 249
C + + +C G DG AC GDSGGPL C DG+W + GI SFGSG C
Sbjct: 170 CSQRDWWGTTVKETMVCAG-GDGVISACNGDSGGPLNC-QADGQWDVRGIVSFGSGLSCN 227
Score = 142 bits (361), Expect = 5e-40
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 6/149 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
AL+KL+ D ++ CL + C TGWGR+ G + ++L+Q P+
Sbjct: 107 ALIKLAETVELGDT-IQVACLPSEGS-LLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPV 164
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ + C + + +C G DG AC GDSGGPL C DG+W + GI SFGS
Sbjct: 165 VDYATCSQRDWWGTTVKETMVCAG-GDGVISACNGDSGGPLNC-QADGQWDVRGIVSFGS 222
Query: 405 G--CAKSGYPDVYTKLSFYLPWIRKQINI 431
G C P V+T++S Y+ WI +++ +
Sbjct: 223 GLSCNTFKKPTVFTRVSAYIDWINQKLQL 251
Score = 36.8 bits (86), Expect = 0.008
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 248 CGVGIRYSHRQPRLINGKESIRGAWPWQ 275
CG I + R++ G+++I +WPWQ
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQ 28
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 223 bits (571), Expect = 9e-71
Identities = 66/245 (26%), Positives = 107/245 (43%), Gaps = 18/245 (7%)
Query: 13 DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAA 72
CG + + ++I G+ + PW ++ R G + + CG L+ P WV++A
Sbjct: 12 QCGQ--KTLRPRFKIIGGEFTTIENQPWFAAIYR-RHRGGSVTYVCGGSLMSPCWVISAT 68
Query: 73 HCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALL 128
HC + P E + LG + E++ VE + +H+++ +H+DIALL
Sbjct: 69 HCFIDY----PKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALL 124
Query: 129 KLSRPTSAR---DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 184
K+ + ++ +CL P C TG+G+ L + L+ V
Sbjct: 125 KIRSKEGRCAQPSRTIQTICLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKMTVVK 183
Query: 185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
L + C+ + E+ LC + +C GDSGGPL CS GR L GI S+G
Sbjct: 184 LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTGIVSWG 242
Query: 245 SGYCG 249
G C
Sbjct: 243 RG-CA 246
Score = 138 bits (350), Expect = 4e-38
Identities = 49/150 (32%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 285 ALLKLSRPTSAR---DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
ALLK+ + ++ +CL P C TG+G+ L + L+
Sbjct: 122 ALLKIRSKEGRCAQPSRTIQTICLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKMT 180
Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
V L + C+ + E+ LC + +C GDSGGPL CS GR L GI
Sbjct: 181 VVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTGIV 239
Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
S+G GCA P VYT++S +LPWIR
Sbjct: 240 SWGRGCALKDKPGVYTRVSHFLPWIRSHTK 269
Score = 35.4 bits (82), Expect = 0.028
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 248 CGVGIRYSHRQPRLINGKESIRGAWPWQ 275
G + + ++I G+ + PW
Sbjct: 11 FQCGQKTLRPRFKIIGGEFTTIENQPWF 38
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 220 bits (564), Expect = 4e-70
Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 17/227 (7%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G+++ +WPWQVSLQ G H CG L+ SWV+TAAHCI +
Sbjct: 2 VGGEDARPNSWPWQVSLQY--DSSGQWRHTCGGTLVDQSWVLTAAHCISS-------SRT 52
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSARDKGVRA 143
+ VLG + E + + V ++ VH++++ + +DIALLKL+ P S DK ++
Sbjct: 53 YRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDK-IQL 111
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
CL A + C TGWGR++ G L+Q ++ + + + C +
Sbjct: 112 GCLPAAG-TILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKT 170
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG 249
+C G DG +C GDSGGPL C +G+W + GI SFGS C
Sbjct: 171 NMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCN 216
Score = 143 bits (362), Expect = 3e-40
Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
ALLKL+ P S DK ++ CL A + C TGWGR++ G L+Q ++ +
Sbjct: 95 ALLKLASPVSLTDK-IQLGCLPAAG-TILPNNYVCYVTGWGRLQTNGASPDILQQGQLLV 152
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ + C + +C G DG +C GDSGGPL C +G+W + GI SFGS
Sbjct: 153 VDYATCSKPGWWGSTVKTNMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGS 211
Query: 405 --GCAKSGYPDVYTKLSFYLPWIRKQI 429
GC P V+T++S Y+ WI I
Sbjct: 212 SLGCNYYHKPSVFTRVSNYIDWINSVI 238
Score = 28.3 bits (64), Expect = 4.8
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 262 INGKESIRGAWPWQ 275
+ G+++ +WPWQ
Sbjct: 2 VGGEDARPNSWPWQ 15
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 219 bits (560), Expect = 2e-69
Identities = 75/234 (32%), Positives = 106/234 (45%), Gaps = 19/234 (8%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
G + + PWQ ++ H R CG +LI W+++AAHC P
Sbjct: 2 KGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQER----FPPHH 57
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSAR---DKGVR 142
T +LG R + E + VE+ VH+EF Y +DIALL+L +S VR
Sbjct: 58 LTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVR 117
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVEL 201
VCL AD + +C +G+G+ + S+ L++ V L+ S C ++ + +
Sbjct: 118 TVCLPPAD-LQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTV 176
Query: 202 HGGHLCGGQLDGFSG------ACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
LC G AC GDSGGPL C DGR L GI S+G G CG
Sbjct: 177 TDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCL-NDGRMTLVGIISWGLG-CG 228
Score = 139 bits (353), Expect = 8e-39
Identities = 54/155 (34%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 285 ALLKLSRPTSAR---DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
ALL+L +S VR VCL AD + +C +G+G+ + S+ L++
Sbjct: 98 ALLQLKSDSSRCAQESSVVRTVCLPPAD-LQLPDWTECELSGYGKHEALSPFYSERLKEA 156
Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG------ACIGDSGGPLQCSLKDGRW 394
V L+ S C ++ + + LC G AC GDSGGPL C DGR
Sbjct: 157 HVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCL-NDGRM 215
Query: 395 YLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
L GI S+G GC + P VYTK++ YL WIR +
Sbjct: 216 TLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNM 250
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 218 bits (557), Expect = 5e-69
Identities = 80/228 (35%), Positives = 111/228 (48%), Gaps = 20/228 (8%)
Query: 29 NGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELW 88
NG++++ +W WQVSLQ + G H CG LI P WVVTA HCI +
Sbjct: 1 NGEDAVPYSWSWQVSLQY--EKDGAFHHTCGGSLIAPDWVVTAGHCIST-------SRTY 51
Query: 89 TAVLGDWDRTEEEKSE--VRIPVERIRVHEEFHNY----HHDIALLKLSRPTSARDKGVR 142
VLG++DR+ E SE + I + VH +++ +DIAL+KLSR DK V+
Sbjct: 52 QVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDK-VQ 110
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
L A + + C +GWGR+ G L KL+Q +P + C + +
Sbjct: 111 LANLPPAG-DILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVK 169
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG 249
+C G C GDSGGPL C DG W + G+TSF S + C
Sbjct: 170 KTMVCAG--GDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCN 215
Score = 143 bits (364), Expect = 1e-40
Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 6/148 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
AL+KLSR DK V+ L A + + C +GWGR+ G L KL+Q +P
Sbjct: 95 ALVKLSRSAQLGDK-VQLANLPPAG-DILPNEAPCYISGWGRLYTGGPLPDKLQQALLPT 152
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ C + + +C G C GDSGGPL C DG W + G+TSF S
Sbjct: 153 VDYEHCSQWDWWGITVKKTMVCAG--GDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVS 210
Query: 405 --GCAKSGYPDVYTKLSFYLPWIRKQIN 430
GC P V+T++S ++ WI + I
Sbjct: 211 AFGCNTIKKPTVFTRVSAFIDWIDETIA 238
Score = 29.1 bits (66), Expect = 2.2
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 263 NGKESIRGAWPWQ 275
NG++++ +W WQ
Sbjct: 1 NGEDAVPYSWSWQ 13
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 217 bits (555), Expect = 8e-69
Identities = 79/224 (35%), Positives = 113/224 (50%), Gaps = 14/224 (6%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G ES G WPWQVSLQV +L H CG LI WV+TAAHC LP+ ++
Sbjct: 2 VGGTESSWGEWPWQVSLQV---KLTAQRHLCGGSLIGHQWVLTAAHCFDG----LPLQDV 54
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
W G + ++ K ++ I +H+ + +HDIAL+KL P + + +
Sbjct: 55 WRIYSGILELSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEF-QKPIS 113
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L C TGWG K KG++ + L+++ +PL C+ +Y D ++
Sbjct: 114 LPSKGD-TSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDY-KITQRM 171
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+C G +G AC GDSGGPL C +G W L GITS+G G C
Sbjct: 172 VCAGYKEGGKDACKGDSGGPLVCK-HNGMWRLVGITSWGEG-CA 213
Score = 148 bits (375), Expect = 4e-42
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
AL+KL P + + + L C TGWG K KG++ + L+++ +PL
Sbjct: 95 ALIKLQAPLEYTEF-QKPISLPSKGD-TSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPL 152
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
C+ +Y D ++ +C G +G AC GDSGGPL C +G W L GITS+G
Sbjct: 153 VTNEECQKRYQDY-KITQRMVCAGYKEGGKDACKGDSGGPLVCK-HNGMWRLVGITSWGE 210
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
GCA+ P VYTK++ Y+ WI ++
Sbjct: 211 GCARREQPGVYTKVAEYMDWILEKTQ 236
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 217 bits (555), Expect = 8e-69
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 14/224 (6%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G S+RG WPWQV+L H CG +I W++TAAHC + P++
Sbjct: 2 VGGTASVRGEWPWQVTLHT---TSPTQRHLCGGSIIGNQWILTAAHCFYGV----ESPKI 54
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
G +++E ++ V+ I +H+++ +DIALLKL + D R +
Sbjct: 55 LRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDS-QRPIS 113
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L + C TGWG K + + + L++ ++PL C+ +Y ++
Sbjct: 114 LPSKGE-RNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH-KITHKM 171
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+C G +G AC GDSGGPL C + W+L GITS+G G C
Sbjct: 172 ICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEG-CA 213
Score = 147 bits (374), Expect = 5e-42
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
ALLKL + D R + L + C TGWG K + + + L++ ++PL
Sbjct: 95 ALLKLETTVNYTDS-QRPISLPSKGE-RNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPL 152
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
C+ +Y ++ +C G +G AC GDSGGPL C + W+L GITS+G
Sbjct: 153 VTNEECQKRYRGH-KITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGE 210
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
GCA+ P VYT + Y+ WI ++
Sbjct: 211 GCAQRERPGVYTNVVEYVDWILEKT 235
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 216 bits (553), Expect = 1e-68
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 19/229 (8%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G E+ +PWQVS++ R H+CG +I+ WVV AAHC+ + P L
Sbjct: 2 VGGIEARPYEFPWQVSVR----RKSSDSHFCGGSIINDRWVVCAAHCMQGEA-----PAL 52
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
+ V+G+ D + V+ I V+E + +D++++K + + V +C
Sbjct: 53 VSLVVGEHDSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDIN-VGPIC 111
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGG 204
D V ++ +GWG + G LR + + + + C Y ++
Sbjct: 112 APDPANDYVY--RKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSD-TIYDD 168
Query: 205 HLCGGQLDGFSG--ACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
+C G + +C GDSGGPL G + L GI S+G G C G
Sbjct: 169 MICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIG-CASG 216
Score = 146 bits (371), Expect = 1e-41
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
+++K + + V +C D V ++ +GWG + G LR + +
Sbjct: 93 SVIKTAVAITFDIN-VGPICAPDPANDYVY--RKSQCSGWGTINSGGVCCPAVLRYVTLN 149
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSG--ACIGDSGGPLQCSLKDGRWYLAGITS 401
+ + C Y ++ +C G + +C GDSGGPL G + L GI S
Sbjct: 150 ITTNAFCDAVYTSD-TIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVS 208
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
+G GCA GYP VY+++ F+ WI I
Sbjct: 209 WGIGCAS-GYPGVYSRVGFHAGWITDTIT 236
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 215 bits (551), Expect = 3e-68
Identities = 77/226 (34%), Positives = 108/226 (47%), Gaps = 14/226 (6%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDI-FSLPIPE 86
+ G ++ G WPWQVSL L H CGA LI P+W+V+AAHC +D F P
Sbjct: 2 VGGTDADEGEWPWQVSLHALGQG-----HICGASLISPNWLVSAAHCYIDDRGFRYSDPT 56
Query: 87 LWTAVLGDWDRTE-EEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRA 143
WTA LG D+++ ++RI H F + +DIALL+L +P VR
Sbjct: 57 QWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSM-VRP 115
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
+ L DA + TGWG + G L++ + + N + C + +
Sbjct: 116 ISLPDAS-HVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQI--TP 172
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+C G L G +C GDSGGPL DGR + AG+ S+G G C
Sbjct: 173 RMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDG-CA 217
Score = 150 bits (382), Expect = 3e-43
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
ALL+L +P VR + L DA + TGWG + G L++ + +
Sbjct: 99 ALLELEKPAEYSSM-VRPISLPDAS-HVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRV 156
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
N + C + + +C G L G +C GDSGGPL DGR + AG+ S+G
Sbjct: 157 INQTTCENLLPQQI--TPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGD 214
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQINI 431
GCA+ P VYT+L + WI++ +
Sbjct: 215 GCAQRNKPGVYTRLPLFRDWIKENTGV 241
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 215 bits (551), Expect = 4e-68
Identities = 76/240 (31%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 11 ARDCGV-GIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVV 69
+ DCG + R++ G + +WPWQVSL+ H+CG LI P WV+
Sbjct: 1 SFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGM-----HFCGGTLISPEWVL 55
Query: 70 TAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLK 129
TAAHC+ P P + +LG E I V R+ + DIALLK
Sbjct: 56 TAAHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEP----TRKDIALLK 107
Query: 130 LSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNIS 189
LS P DK V CL + + +C TGWG + L++ ++P+
Sbjct: 108 LSSPAVITDK-VIPACLPSPNYVV-ADRTECFITGWGETQG-TFGAGLLKEAQLPVIENK 164
Query: 190 VCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
VC + + LC G L G + +C GD+GGPL C + ++ L G+TS+G G C
Sbjct: 165 VCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCF-EKDKYILQGVTSWGLG-CA 222
Score = 140 bits (354), Expect = 4e-39
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
ALLKLS P DK V CL + + +C TGWG + L++ ++P+
Sbjct: 104 ALLKLSSPAVITDK-VIPACLPSPNYVV-ADRTECFITGWGETQG-TFGAGLLKEAQLPV 160
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
VC + + LC G L G + +C GD+GGPL C + ++ L G+TS+G
Sbjct: 161 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCF-EKDKYILQGVTSWGL 219
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
GCA+ P VY ++S ++ WI +
Sbjct: 220 GCARPNKPGVYVRVSRFVTWIEGVM 244
Score = 33.0 bits (76), Expect = 0.13
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 248 CGV-GIRYSHRQPRLINGKESIRGAWPWQ 275
CG + R++ G + +WPWQ
Sbjct: 4 CGKPQVEPKKCPGRVVGGCVAHPHSWPWQ 32
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 216 bits (552), Expect = 1e-67
Identities = 69/245 (28%), Positives = 103/245 (42%), Gaps = 22/245 (8%)
Query: 13 DCGV-GIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
CG + + +PR+I G S+ G+ PW ++ + +C L+H WVV+A
Sbjct: 21 ACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIGD-------SFCAGSLVHTCWVVSA 73
Query: 72 AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN---YHHDIALL 128
AHC + P + + VLG +E+ + + HD+ L+
Sbjct: 74 AHCFSHS----PPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLI 129
Query: 129 KLSRPTSAR---DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 184
+L + + V+ +CL + +C GWG + S LR+ VP
Sbjct: 130 RLKKKGDRCATRSQFVQPICLPEPGSTFP-AGHKCQIAGWGHLDENVSGYSSSLREALVP 188
Query: 185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
L C ++ LC G D S AC GDSGGPL C K+G YL GI S+G
Sbjct: 189 LVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWG 247
Query: 245 SGYCG 249
G CG
Sbjct: 248 DG-CG 251
Score = 137 bits (346), Expect = 2e-37
Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 6/150 (4%)
Query: 285 ALLKLSRPTSAR---DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
L++L + + V+ +CL + +C GWG + S LR+
Sbjct: 127 VLIRLKKKGDRCATRSQFVQPICLPEPGSTFP-AGHKCQIAGWGHLDENVSGYSSSLREA 185
Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
VPL C ++ LC G D S AC GDSGGPL C K+G YL GI
Sbjct: 186 LVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGII 244
Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
S+G GC + P VYT+++ Y+ WI +I
Sbjct: 245 SWGDGCGRLHKPGVYTRVANYVDWINDRIR 274
Score = 33.8 bits (78), Expect = 0.094
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 248 CGV-GIRYSHRQPRLINGKESIRGAWPWQ 275
CG + + +PR+I G S+ G+ PW
Sbjct: 22 CGRRHKKRTFLRPRIIGGSSSLPGSHPWL 50
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 214 bits (548), Expect = 1e-67
Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 16/230 (6%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G+ + PW ++ H R G + + CG LI P WV++A HC + P E
Sbjct: 2 IGGEFTTIENQPWFAAIYRRH-RGGSVTYVCGGSLISPCWVISATHCFIDY----PKKED 56
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSAR---DKG 140
+ LG + E++ VE + +H+++ +H+DIALLK+ +
Sbjct: 57 YIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 141 VRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSV 199
++ + L P C TG+G+ L + L+ V L + C+ +
Sbjct: 117 IQTISLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 200 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
E+ LC + +C GDSGGPL CS GR L GI S+G G C
Sbjct: 176 EVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTGIVSWGRG-CA 223
Score = 138 bits (349), Expect = 3e-38
Identities = 48/149 (32%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
Query: 285 ALLKLSRPTSAR---DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
ALLK+ + ++ + L P C TG+G+ L + L+
Sbjct: 99 ALLKIRSKEGRCAQPSRTIQTISLPSMYNDP-QFGTSCEITGFGKENSTDYLYPEQLKMT 157
Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
V L + C+ + E+ LC + +C GDSGGPL CS GR L GI
Sbjct: 158 VVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTGIV 216
Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
S+G GCA P VYT++S +LPWIR
Sbjct: 217 SWGRGCALKDKPGVYTRVSHFLPWIRSHT 245
Score = 28.0 bits (63), Expect = 6.2
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 262 INGKESIRGAWPWQ 275
I G+ + PW
Sbjct: 2 IGGEFTTIENQPWF 15
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 216 bits (551), Expect = 1e-67
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 15/231 (6%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G+++ GAWPW VSLQ+ H CG L++ W++TAAHC
Sbjct: 2 IGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIK----KKVTD 57
Query: 88 WTAVLGDWDRTEEEKSEVRIP-----VERIRVHEEF--HNYHHDIALLKLSRPTSARDKG 140
W + G + V+ P VE+I +HE++ + +DIAL+K++ P +
Sbjct: 58 WRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHF- 116
Query: 141 VRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRDKYGDSV 199
+ CL P Q C GWG ++ S L++ RV L ++ +C +
Sbjct: 117 IGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNG 176
Query: 200 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSFGSGYCG 249
+ ++C G +G C GDSGGPL C + + + GITS+G G C
Sbjct: 177 RIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVG-CA 226
Score = 148 bits (375), Expect = 1e-41
Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVP 343
AL+K++ P + + CL P Q C GWG ++ S L++ RV
Sbjct: 103 ALMKITPPVTCGHF-IGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVD 161
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL-KDGRWYLAGITSF 402
L ++ +C + + ++C G +G C GDSGGPL C + + + GITS+
Sbjct: 162 LIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSW 221
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
G GCA++ P VYT YL WI +I
Sbjct: 222 GVGCARAKRPGVYTSTWSYLNWIASKIG 249
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 225 bits (575), Expect = 2e-67
Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 15/241 (6%)
Query: 12 RDCGVGIRYSHR-QPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVT 70
R C + + + +PR++ G S+RG WPWQV+L H CG +I W++T
Sbjct: 372 RLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHT---TSPTQRHLCGGSIIGNQWILT 428
Query: 71 AAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALL 128
AAHC + + P++ G +++E ++ V+ I +H+++ +DIALL
Sbjct: 429 AAHCFYG----VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALL 484
Query: 129 KLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNI 188
KL + D R +CL R C TGWG K + + + L++ ++PL
Sbjct: 485 KLETTVNYTDS-QRPICLPSKGDR-NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTN 542
Query: 189 SVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
C+ +Y ++ +C G +G AC GDSGGPL C + W+L GITS+G G C
Sbjct: 543 EECQKRYRGH-KITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEG-C 599
Query: 249 G 249
Sbjct: 600 A 600
Score = 148 bits (375), Expect = 3e-39
Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
ALLKL + D R +CL R C TGWG K + + + L++ ++PL
Sbjct: 482 ALLKLETTVNYTDS-QRPICLPSKGDR-NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPL 539
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
C+ +Y ++ +C G +G AC GDSGGPL C + W+L GITS+G
Sbjct: 540 VTNEECQKRYRGH-KITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGE 597
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
GCA+ P VYT + Y+ WI ++
Sbjct: 598 GCAQRERPGVYTNVVEYVDWILEKT 622
Score = 33.3 bits (76), Expect = 0.17
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 239 GITSFGSGYCGVGIRYSHR-QPRLINGKESIRGAWPWQ 275
GI+ + C + + + +PR++ G S+RG WPWQ
Sbjct: 365 GISGYTLRLCKMDNECTTKIKPRIVGGTASVRGEWPWQ 402
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 212 bits (542), Expect = 7e-67
Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 23/227 (10%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G+++ G +PWQV L +CG +++ W+VTAAHC+
Sbjct: 2 VGGEDAKPGQFPWQVVLNGKVD------AFCGGSIVNEKWIVTAAHCVET-------GVK 48
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSARDKGVRA 143
T V G+ + E E +E + V RI H F+ Y+HDIALL+L P V
Sbjct: 49 ITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSY-VTP 107
Query: 144 VCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELH 202
+C+ D + + K +GWGRV KG L+ +RVPL + + C ++
Sbjct: 108 ICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTI--T 165
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
C G +G +C GDSGGP +G +L GI S+G C
Sbjct: 166 NNMFCAGFHEGGRDSCQGDSGGPHVTE-VEGTSFLTGIISWGEE-CA 210
Score = 144 bits (365), Expect = 9e-41
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 5/148 (3%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVP 343
ALL+L P V +C+ D + + K +GWGRV KG L+ +RVP
Sbjct: 91 ALLELDEPLVLNSY-VTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVP 149
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
L + + C ++ C G +G +C GDSGGP +G +L GI S+G
Sbjct: 150 LVDRATCLRSTKFTI--TNNMFCAGFHEGGRDSCQGDSGGPHVTE-VEGTSFLTGIISWG 206
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQINI 431
CA G +YTK+S Y+ WI+++ +
Sbjct: 207 EECAMKGKYGIYTKVSRYVNWIKEKTKL 234
Score = 27.2 bits (61), Expect = 9.6
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 262 INGKESIRGAWPWQ 275
+ G+++ G +PWQ
Sbjct: 2 VGGEDAKPGQFPWQ 15
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 212 bits (542), Expect = 8e-67
Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 17/225 (7%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G ++ GAWPW V L CGA L+ W+V+AAHC++ P
Sbjct: 2 VGGSDAKEGAWPWVVGLYYDDR------LLCGASLVSSDWLVSAAHCVYGRNLE---PSK 52
Query: 88 WTAVLGDWDRTE-EEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
WTA+LG ++ V ++ I ++ + +DIA++ L + D ++ +
Sbjct: 53 WTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDY-IQPI 111
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
L + ++ P + C GWG V +G L++ VPL + C+ + + +
Sbjct: 112 SLPEENQV-FPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEY-NITEN 169
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+C G +G +C GDSGGPL C ++ RW+LAG+TSFG C
Sbjct: 170 MICAGYEEGGIDSCQGDSGGPLMCQ-ENNRWFLAGVTSFGYE-CA 212
Score = 148 bits (377), Expect = 1e-42
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 4/146 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
A++ L + D ++ + L + ++ P + C GWG V +G L++ VPL
Sbjct: 94 AMMHLEFKVNYTDY-IQPISLPEENQV-FPPGRNCSIAGWGTVVYQGTTADILQEADVPL 151
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ C+ + + + +C G +G +C GDSGGPL C ++ RW+LAG+TSFG
Sbjct: 152 LSNERCQQQMPEY-NITENMICAGYEEGGIDSCQGDSGGPLMCQ-ENNRWFLAGVTSFGY 209
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
CA P VY ++S + WI+ ++
Sbjct: 210 ECALPNRPGVYARVSRFTEWIQSFLH 235
Score = 27.5 bits (62), Expect = 8.6
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 262 INGKESIRGAWPWQ 275
+ G ++ GAWPW
Sbjct: 2 VGGSDAKEGAWPWV 15
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 212 bits (541), Expect = 9e-67
Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 13/224 (5%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G ++ G +P+Q+S Q H+CGA + + ++ +TA HC++ D P
Sbjct: 2 VGGTDATLGEFPYQLSFQETFIGFSF--HFCGASIYNENYAITAGHCVYGD--DYENPSG 57
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
V G+ D + E SE I V +I +HE F + +DI+LLKLS + D V +
Sbjct: 58 LQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDN-VAPIA 116
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L + + TGWG G+ L+++ VPL + CR YG E+
Sbjct: 117 LPEQG---HTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGAD-EILDSM 172
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+C G +G +C GDSGGPL S G YLAGI S+G G C
Sbjct: 173 ICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGYG-CA 214
Score = 141 bits (359), Expect = 7e-40
Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
+LLKLS + D V + L + + TGWG G+ L+++ VPL
Sbjct: 98 SLLKLSGSLTFNDN-VAPIALPEQG---HTATGDVIVTGWGTTSEGGNTPDVLQKVTVPL 153
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ CR YG E+ +C G +G +C GDSGGPL S G YLAGI S+G
Sbjct: 154 VSDEDCRADYGAD-EILDSMICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGY 211
Query: 405 GCAKSGYPDVYTKLSFYLPWIRK 427
GCA+ GYP VYT++S+++ WI+
Sbjct: 212 GCARPGYPGVYTEVSYHVDWIKA 234
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 213 bits (544), Expect = 1e-66
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 29/255 (11%)
Query: 12 RDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
DCG +++NG +++ +PW + + CG LI+ ++VTA
Sbjct: 12 NDCGY----QVEADKILNGDDTVPEEFPWTAMIGYKNSS-NFEQFACGGSLINNRYIVTA 66
Query: 72 AHCIHNDIFSLPIPELWTAVLGDWDRTEEE-----------KSEVRIPVERIRVHEEF-- 118
AHC+ + + L LG+W+ + + + +E H ++
Sbjct: 67 AHCVAGRVLR-VVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVD 125
Query: 119 --HNYHHDIALLKLSRPTSARDKGVRAVCL-TDADKRPVNPKQQCVATGWGRVKPKGDLV 175
+ +HDIAL++L+R + +R VCL ++ V Q+ GWGR + G
Sbjct: 126 GSKDRYHDIALIRLNRQVEFTNY-IRPVCLPQPNEEVQVG--QRLTVVGWGRTE-TGQYS 181
Query: 176 SKLRQIRVPLHNISVCRDKYGD-SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGR 234
+ +++ VP+ + C +G V + LC G +C GDSGGPL + +
Sbjct: 182 TIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEKA-KDSCGGDSGGPLLAERANQQ 240
Query: 235 WYLAGITSFGSGYCG 249
++L G+ SFG+ CG
Sbjct: 241 FFLEGLVSFGAT-CG 254
Score = 143 bits (364), Expect = 4e-40
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP 343
AL++L+R + +R VCL ++ V Q+ GWGR + G + +++ VP
Sbjct: 135 ALIRLNRQVEFTNY-IRPVCLPQPNEEVQVG--QRLTVVGWGRTE-TGQYSTIKQKLAVP 190
Query: 344 LHNISVCRDKYGD-SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
+ + C +G V + LC G +C GDSGGPL + +++L G+ SF
Sbjct: 191 VVHAEQCAKTFGAAGVRVRSSQLCAGGEKA-KDSCGGDSGGPLLAERANQQFFLEGLVSF 249
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
G+ C G+P +YTK+ Y WI I
Sbjct: 250 GATCGTEGWPGIYTKVGKYRDWIEGNI 276
Score = 31.1 bits (71), Expect = 0.65
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 248 CGVGIRYSHRQPRLINGKESIRGAWPWQNLI 278
CG +++NG +++ +PW +I
Sbjct: 14 CGY----QVEADKILNGDDTVPEEFPWTAMI 40
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 211 bits (540), Expect = 1e-66
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 21/226 (9%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G+E G PWQ L +CG ++ +++TAAHC++ +
Sbjct: 2 VGGQECKDGECPWQALLINEENE-----GFCGGTILSEFYILTAAHCLYQ-------AKR 49
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVC 145
+ +GD + +EE E VE + H F Y DIA+L+L P + R V C
Sbjct: 50 FKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN-VAPAC 108
Query: 146 L--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
L D + + ++ + +G+GR KG+ ++L+ + VP + + C+ +
Sbjct: 109 LPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFII--TQ 166
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
C G AC GDSGGP +++ GI S+G G C
Sbjct: 167 NMFCAGYDTKQEDACQGDSGGPHVTR-FKDTYFVTGIVSWGEG-CA 210
Score = 142 bits (360), Expect = 6e-40
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 6/148 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
A+L+L P + R V CL D + + ++ + +G+GR KG+ ++L+ + V
Sbjct: 90 AVLRLKTPITFRMN-VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEV 148
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
P + + C+ + C G AC GDSGGP +++ GI S+
Sbjct: 149 PYVDRNSCKLSSSFII--TQNMFCAGYDTKQEDACQGDSGGPHVTR-FKDTYFVTGIVSW 205
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
G GCA+ G +YTK++ +L WI + +
Sbjct: 206 GEGCARKGKYGIYTKVTAFLKWIDRSMK 233
Score = 27.2 bits (61), Expect = 8.8
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 262 INGKESIRGAWPWQ 275
+ G+E G PWQ
Sbjct: 2 VGGQECKDGECPWQ 15
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 211 bits (539), Expect = 2e-66
Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 19/227 (8%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G+ + +WPWQ+SLQ H CG LI WV+TAAHC+ +
Sbjct: 2 VGGRVAQPNSWPWQISLQYKSG--SSYYHTCGGSLIRQGWVMTAAHCVDS-------ART 52
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH----NYHHDIALLKLSRPTSARDKGVRA 143
W VLG+ + E E + V + +H ++ +DIALL+L+ S V+
Sbjct: 53 WRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSA-VQL 111
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
L ++ + + C TGWG+ G L L+Q +P + + C +
Sbjct: 112 AALPPSN-QILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKT 170
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG 249
+C G G + C GDSGGPL C +G +Y+ G+TSF S C
Sbjct: 171 TMVCAG--GGANSGCNGDSGGPLNC-QVNGSYYVHGVTSFVSSSGCN 214
Score = 135 bits (342), Expect = 2e-37
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
ALL+L+ S V+ L ++ + + C TGWG+ G L L+Q +P
Sbjct: 95 ALLRLNTQASLNSA-VQLAALPPSN-QILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPS 152
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF-- 402
+ + C + +C G G + C GDSGGPL C +G +Y+ G+TSF
Sbjct: 153 VDHATCSSSGWWGSTVKTTMVCAG--GGANSGCNGDSGGPLNC-QVNGSYYVHGVTSFVS 209
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQI 429
SGC S P V+T++S Y+ W+ +
Sbjct: 210 SSGCNASKKPTVFTRVSAYISWMNGIM 236
Score = 27.5 bits (62), Expect = 7.2
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 262 INGKESIRGAWPWQ 275
+ G+ + +WPWQ
Sbjct: 2 VGGRVAQPNSWPWQ 15
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 211 bits (540), Expect = 2e-66
Identities = 73/229 (31%), Positives = 103/229 (44%), Gaps = 20/229 (8%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ GK +G PWQV L V CG LI+ WVV+AAHC +
Sbjct: 2 VGGKVCPKGECPWQVLLLVNGA------QLCGGTLINTIWVVSAAHCFD----KIKNWRN 51
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
AVLG+ D +E + E V ++ + + +HDIALL+L +P D V +C
Sbjct: 52 LIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDH-VVPLC 110
Query: 146 L--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY---GDSVE 200
L +R + + + +GWG++ +G +L + VP C + GDS
Sbjct: 111 LPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPN 170
Query: 201 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+ C G DG +C GDSGGP G WYL GI S+G G C
Sbjct: 171 ITEYMFCAGYSDGSKDSCKGDSGGPHATH-YRGTWYLTGIVSWGQG-CA 217
Score = 142 bits (361), Expect = 5e-40
Identities = 51/151 (33%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
ALL+L +P D V +CL +R + + + +GWG++ +G +L + V
Sbjct: 92 ALLRLHQPVVLTDH-VVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNV 150
Query: 343 PLHNISVCRDKY---GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 399
P C + GDS + C G DG +C GDSGGP G WYL GI
Sbjct: 151 PRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATH-YRGTWYLTGI 209
Query: 400 TSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
S+G GCA G+ VYT++S Y+ W++K +
Sbjct: 210 VSWGQGCATVGHFGVYTRVSQYIEWLQKLMR 240
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 211 bits (539), Expect = 3e-66
Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 18/227 (7%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G E+ R +WP Q+SLQ H CG LI +WV+TAAHC+
Sbjct: 2 VGGTEAQRNSWPSQISLQYRSGSSWA--HTCGGTLIRQNWVMTAAHCVDR-------ELT 52
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN----YHHDIALLKLSRPTSARDKGVRA 143
+ V+G+ + + +E + V++I VH ++ +DIALL+L++ + V+
Sbjct: 53 FRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSY-VQL 111
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
L A + C TGWG + G L L+Q +P + ++C +
Sbjct: 112 GVLPRAG-TILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKN 170
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG 249
+C G DG C GDSGGPL C L +G++ + G+TSF S C
Sbjct: 171 SMVCAG-GDGVRSGCQGDSGGPLHC-LVNGQYAVHGVTSFVSRLGCN 215
Score = 136 bits (345), Expect = 9e-38
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 6/147 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
ALL+L++ + V+ L A + C TGWG + G L L+Q +P
Sbjct: 95 ALLRLAQSVTLNSY-VQLGVLPRAG-TILANNSPCYITGWGLTRTNGQLAQTLQQAYLPT 152
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ ++C + +C G DG C GDSGGPL C L +G++ + G+TSF S
Sbjct: 153 VDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGDSGGPLHC-LVNGQYAVHGVTSFVS 210
Query: 405 --GCAKSGYPDVYTKLSFYLPWIRKQI 429
GC + P V+T++S Y+ WI I
Sbjct: 211 RLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 27.9 bits (63), Expect = 5.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 262 INGKESIRGAWPWQ 275
+ G E+ R +WP Q
Sbjct: 2 VGGTEAQRNSWPSQ 15
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 210 bits (538), Expect = 3e-66
Identities = 81/222 (36%), Positives = 110/222 (49%), Gaps = 19/222 (8%)
Query: 30 GKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWT 89
G E G WPWQ SLQ H CGA LI+ +W+V+AAHC P WT
Sbjct: 4 GTEVEEGEWPWQASLQWDGS------HRCGATLINATWLVSAAHCFTTY----KNPARWT 53
Query: 90 AVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVCLT 147
A G + S+++ + RI VHE++ ++ +DI+L +LS P + V VCL
Sbjct: 54 ASFG----VTIKPSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNA-VHRVCLP 108
Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
DA P TG+G +K G + LRQ +V L + + C + + + LC
Sbjct: 109 DASYE-FQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLC 167
Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
G L+G + AC GDSGGPL S WYLAGI S+G C
Sbjct: 168 AGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDE-CA 208
Score = 156 bits (396), Expect = 3e-45
Identities = 55/147 (37%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
+L +LS P + V VCL DA P TG+G +K G + LRQ +V L
Sbjct: 88 SLAELSSPVPYTNA-VHRVCLPDASYE-FQPGDVMFVTGFGALKNDGYSQNHLRQAQVTL 145
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ + C + + + LC G L+G + AC GDSGGPL S WYLAGI S+G
Sbjct: 146 IDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGD 205
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQINI 431
CAK P VYT+++ WI + I
Sbjct: 206 ECAKPNKPGVYTRVTALRDWITSKTGI 232
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 209 bits (534), Expect = 1e-65
Identities = 65/229 (28%), Positives = 95/229 (41%), Gaps = 21/229 (9%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G S+ G+ PW ++ + +C L+H WVV+AAHC + P +
Sbjct: 2 IGGSSSLPGSHPWLAAIYIGD-------SFCAGSLVHTCWVVSAAHCFSHS----PPRDS 50
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN---YHHDIALLKLSRPTSAR---DKGV 141
+ VLG +E+ + + HD+ L++L + + V
Sbjct: 51 VSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFV 110
Query: 142 RAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVE 200
+ +CL + +C GWG + S LR+ VPL C +
Sbjct: 111 QPICLPEPGSTFP-AGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGAD 169
Query: 201 LHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+ LC G D S AC GDSGGPL C K+G YL GI S+G G CG
Sbjct: 170 ISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDG-CG 216
Score = 136 bits (344), Expect = 1e-37
Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 6/150 (4%)
Query: 285 ALLKLSRPTSAR---DKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
L++L + + V+ +CL + +C GWG + S LR+
Sbjct: 92 VLIRLKKKGDRCATRSQFVQPICLPEPGSTFP-AGHKCQIAGWGHLDENVSGYSSSLREA 150
Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
VPL C ++ LC G D S AC GDSGGPL C K+G YL GI
Sbjct: 151 LVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGII 209
Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
S+G GC + P VYT+++ Y+ WI +I
Sbjct: 210 SWGDGCGRLHKPGVYTRVANYVDWINDRIR 239
Score = 27.6 bits (62), Expect = 6.7
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 262 INGKESIRGAWPWQ 275
I G S+ G+ PW
Sbjct: 2 IGGSSSLPGSHPWL 15
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 209 bits (535), Expect = 2e-65
Identities = 74/232 (31%), Positives = 102/232 (43%), Gaps = 24/232 (10%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
G ++ G WPWQVS+ H CG L+ WV++AAHC ++ E
Sbjct: 2 TGGSSAVAGQWPWQVSITYEGV------HVCGGSLVSEQWVLSAAHCFPSE----HHKEA 51
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
+ LG + ++ I H + DIALL+LSRP + +R +
Sbjct: 52 YEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRY-IRPIS 110
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRVPLHNISVCRDKYGDSVELHG 203
L A C TGWG V P L++ L+Q+ VPL + C Y +
Sbjct: 111 LPAAQAS-FPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEE 169
Query: 204 GH------LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
H +C G ++G AC GDSGGPL C +G WYL GI S+G CG
Sbjct: 170 PHFVQEDMVCAGYVEGGKDACQGDSGGPLSCP-VEGLWYLTGIVSWGDA-CG 219
Score = 142 bits (360), Expect = 9e-40
Identities = 56/154 (36%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRV 342
ALL+LSRP + +R + L A C TGWG V P L++ L+Q+ V
Sbjct: 92 ALLQLSRPITFSRY-IRPISLPAAQAS-FPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEV 149
Query: 343 PLHNISVCRDKYGDSVELHGGH------LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
PL + C Y + H +C G ++G AC GDSGGPL C +G WYL
Sbjct: 150 PLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCP-VEGLWYL 208
Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
GI S+G C P VYT S Y WI+ ++
Sbjct: 209 TGIVSWGDACGARNRPGVYTLASSYASWIQSKVT 242
Score = 27.6 bits (62), Expect = 7.8
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 262 INGKESIRGAWPWQ 275
G ++ G WPWQ
Sbjct: 2 TGGSSAVAGQWPWQ 15
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 209 bits (534), Expect = 2e-65
Identities = 76/232 (32%), Positives = 111/232 (47%), Gaps = 27/232 (11%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I+GK + RG PWQV L + CGAVLIHPSWV+TAAHC+ +
Sbjct: 2 IDGKMTRRGDSPWQVVLLDSKKK-----LACGAVLIHPSWVLTAAHCMDE-------SKK 49
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVC 145
LG++D EK E+ + ++ + VH + +DIALL L++P + + +C
Sbjct: 50 LLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQT-IVPIC 108
Query: 146 LTDADKRPVN---PKQQCVATGWGRVKPKGDLVSK-----LRQIRVPLHNISVCRDKYGD 197
L D+ Q+ + TGWG + + L I++P+ + C + +
Sbjct: 109 LPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSN 168
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
V LC G L AC GDSGGP+ S G W+L G+ S+G G CG
Sbjct: 169 MV--SENMLCAGILGDRQDACEGDSGGPMVAS-FHGTWFLVGLVSWGEG-CG 216
Score = 138 bits (349), Expect = 2e-38
Identities = 49/154 (31%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVN---PKQQCVATGWGRVKPKGDLVSK----- 336
ALL L++P + + +CL D+ Q+ + TGWG + +
Sbjct: 90 ALLHLAQPATLSQT-IVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFV 148
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYL 396
L I++P+ + C + + V LC G L AC GDSGGP+ S G W+L
Sbjct: 149 LNFIKIPVVPHNECSEVMSNMV--SENMLCAGILGDRQDACEGDSGGPMVAS-FHGTWFL 205
Query: 397 AGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
G+ S+G GC VYTK+S YL WI I
Sbjct: 206 VGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR 239
Score = 28.8 bits (65), Expect = 3.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 262 INGKESIRGAWPWQ 275
I+GK + RG PWQ
Sbjct: 2 IDGKMTRRGDSPWQ 15
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 208 bits (532), Expect = 1e-64
Identities = 74/263 (28%), Positives = 107/263 (40%), Gaps = 25/263 (9%)
Query: 4 LCDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLI 63
L + + + S+ R++ G ++ G PWQV L R CGA LI
Sbjct: 8 LFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF----RKSPQELLCGASLI 63
Query: 64 HPSWVVTAAHCIHNDIFSLPI-PELWTAVLGDWDRTE-EEKSEVRIPVERIRVHEEFH-- 119
WV+TAAHC+ + +G RT E E +E+I +H ++
Sbjct: 64 SDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWR 123
Query: 120 -NYHHDIALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPK----- 171
N DIAL+KL +P + D + VCL + + + TGWG +K
Sbjct: 124 ENLDRDIALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANV 182
Query: 172 -GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG---ACIGDSGGPLQ 227
S L+ + +P+ VC+D + C G AC GDSGGP
Sbjct: 183 GKGQPSVLQVVNLPIVERPVCKDSTRIRI--TDNMFCAGYKPDEGKRGDACEGDSGGPFV 240
Query: 228 C-SLKDGRWYLAGITSFGSGYCG 249
S + RWY GI S+G G C
Sbjct: 241 MKSPFNNRWYQMGIVSWGEG-CD 262
Score = 134 bits (339), Expect = 2e-36
Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 15/158 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPK------GDLVSK 336
AL+KL +P + D + VCL + + + TGWG +K S
Sbjct: 131 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 189
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG---ACIGDSGGPLQC-SLKDG 392
L+ + +P+ VC+D + C G AC GDSGGP S +
Sbjct: 190 LQVVNLPIVERPVCKDSTRIRI--TDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN 247
Query: 393 RWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
RWY GI S+G GC + G YT + WI+K I+
Sbjct: 248 RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285
Score = 33.5 bits (77), Expect = 0.099
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 248 CGVGIRYSHRQPRLINGKESIRGAWPWQ 275
+ S+ R++ G ++ G PWQ
Sbjct: 18 TERELLESYIDGRIVEGSDAEIGMSPWQ 45
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 206 bits (527), Expect = 1e-64
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 20/230 (8%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G + G +PWQ+S Q + G H CGA L+ + ++A+HC+ +P
Sbjct: 2 IGGTNASPGEFPWQLSQQR---QSGSWSHSCGASLLSSTSALSASHCVDGV-----LPNN 53
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF----HNYHHDIALLKLSRPTSARDKGVRA 143
+ G W +++ ++ V+ +HE + +Y +DIA+L L+ S ++A
Sbjct: 54 IRVIAGLWQQSDTSGTQTA-NVDSYTMHENYGAGTASYSNDIAILHLATSISLGGN-IQA 111
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGD--SVEL 201
L + CV +GWGR +L L++ +P+ + C +
Sbjct: 112 AVLPANNNND-YAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANI 170
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
H+C G +GAC GDSGGPL C DG + G+TS+ G+G
Sbjct: 171 WDNHICVQDPAGNTGACNGDSGGPLNC--PDGGTRVVGVTSWVVS-SGLG 217
Score = 138 bits (351), Expect = 9e-39
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 10/150 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
A+L L+ S ++A L + CV +GWGR +L L++ +P+
Sbjct: 95 AILHLATSISLGGN-IQAAVLPANNNND-YAGTTCVISGWGRTDGTNNLPDILQKSSIPV 152
Query: 345 HNISVCRDKYGD--SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
+ C + H+C G +GAC GDSGGPL C DG + G+TS+
Sbjct: 153 ITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNC--PDGGTRVVGVTSW 210
Query: 403 ----GSGCAKSGYPDVYTKLSFYLPWIRKQ 428
G G YP VYT++S YL WI
Sbjct: 211 VVSSGLGACLPDYPSVYTRVSAYLGWIGDN 240
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 208 bits (532), Expect = 3e-64
Identities = 61/246 (24%), Positives = 98/246 (39%), Gaps = 23/246 (9%)
Query: 13 DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAA 72
CG + ++ R+I G+++ G +PWQV + G L+ W++TAA
Sbjct: 76 VCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNI--------HGRGGGALLGDRWILTAA 127
Query: 73 HCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-----HNYHHDIAL 127
H ++ LG + E K P+ R+ VH ++ +N+ DIAL
Sbjct: 128 HTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNH-PIRRVSVHPDYRQDESYNFEGDIAL 186
Query: 128 LKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN 187
L+L + + +CL D D + +G+G + + + LR +R+P+ N
Sbjct: 187 LELENSVTLGPN-LLPICLPDNDTF-YDLGLMGYVSGFGVM--EEKIAHDLRFVRLPVAN 242
Query: 188 ISVCRDKY---GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGITSF 243
C + C G AC GDSGG + RW GI S+
Sbjct: 243 PQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSW 302
Query: 244 GSGYCG 249
G G C
Sbjct: 303 GIG-CS 307
Score = 126 bits (319), Expect = 3e-33
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
ALL+L + + +CL D D + +G+G ++ + LR +R+P+
Sbjct: 185 ALLELENSVTLGPN-LLPICLPDNDTF-YDLGLMGYVSGFGVME--EKIAHDLRFVRLPV 240
Query: 345 HNISVCRDKY---GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGIT 400
N C + C G AC GDSGG + RW GI
Sbjct: 241 ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIV 300
Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
S+G GC++ YTK+ Y+ WI+K++
Sbjct: 301 SWGIGCSRG--YGFYTKVLNYVDWIKKEM 327
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 205 bits (525), Expect = 3e-64
Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 24/235 (10%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHND--------- 78
NG+ + +G PW L L+ + +CG L+ SW+VTAAHC+H
Sbjct: 2 FNGRPAQKGTTPWIAMLSHLNGQ-----PFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLR 56
Query: 79 IFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSA 136
L P + +LG R +++E + V+ +H ++ + +D+AL++L
Sbjct: 57 DSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVL 116
Query: 137 RDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYG 196
V +CL + + +GWG+ L +I +P+ + S C+ Y
Sbjct: 117 NAF-VMPICLPEGP---QQEGAMVIVSGWGKQFL-QRFPETLMEIEIPIVDHSTCQKAYA 171
Query: 197 DSV-ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGYCG 249
++ +C G+ +G AC GDSGGP+ + G+WYL G S+G CG
Sbjct: 172 PLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDD-CG 225
Score = 137 bits (347), Expect = 6e-38
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 7/149 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
AL++L V +CL + + +GWG+ L +I +P+
Sbjct: 106 ALVELLESPVLNAF-VMPICLPEGP---QQEGAMVIVSGWGKQFL-QRFPETLMEIEIPI 160
Query: 345 HNISVCRDKYGDSV-ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSF 402
+ S C+ Y ++ +C G+ +G AC GDSGGP+ + G+WYL G S+
Sbjct: 161 VDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSW 220
Query: 403 GSGCAKSGYPDVYTKLSFYLPWIRKQINI 431
G C K VY+ + WI++ +
Sbjct: 221 GDDCGKKDRYGVYSYIHHNKDWIQRVTGV 249
Score = 28.4 bits (64), Expect = 4.4
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 262 INGKESIRGAWPWQ 275
NG+ + +G PW
Sbjct: 2 FNGRPAQKGTTPWI 15
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 205 bits (525), Expect = 3e-64
Identities = 78/241 (32%), Positives = 117/241 (48%), Gaps = 26/241 (10%)
Query: 14 CGVGIRYSHRQP--RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
CGV R++NG+E++ G+WPWQVSLQ H+CG LI+ +WVVTA
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGF-----HFCGGSLINENWVVTA 55
Query: 72 AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLK 129
AHC V G++D+ + ++ + ++ + +++ ++DI LLK
Sbjct: 56 AHCGVTTS--------DVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLK 107
Query: 130 LSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIRVPLHNI 188
LS S V AVCL A CV TGWG + + +L+Q +PL +
Sbjct: 108 LSTAASFSQT-VSAVCLPSASDDF-AAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSN 165
Query: 189 SVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
+ C+ +G + +C G +C+GDSGGPL C K+G W L GI S+GS
Sbjct: 166 TNCKKYWGTKI--KDAMICAGA--SGVSSCMGDSGGPLVCK-KNGAWTLVGIVSWGSS-T 219
Query: 249 G 249
Sbjct: 220 C 220
Score = 139 bits (352), Expect = 9e-39
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 8/146 (5%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKP-KGDLVSKLRQIRVP 343
LLKLS S V AVCL A CV TGWG + + +L+Q +P
Sbjct: 104 TLLKLSTAASFSQT-VSAVCLPSASDDF-AAGTTCVTTGWGLTRYTNANTPDRLQQASLP 161
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
L + + C+ +G + +C G +C+GDSGGPL C K+G W L GI S+G
Sbjct: 162 LLSNTNCKKYWGTKI--KDAMICAGA--SGVSSCMGDSGGPLVCK-KNGAWTLVGIVSWG 216
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQI 429
S + P VY +++ + W+++ +
Sbjct: 217 SSTCSTSTPGVYARVTALVNWVQQTL 242
Score = 29.9 bits (68), Expect = 1.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 248 CGVGIRYSHRQP--RLINGKESIRGAWPWQ 275
CGV R++NG+E++ G+WPWQ
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQ 30
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 209 bits (535), Expect = 4e-64
Identities = 72/255 (28%), Positives = 108/255 (42%), Gaps = 28/255 (10%)
Query: 6 DTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHP 65
+DCG R++ G+++ G WPWQVSL+ H CG L+
Sbjct: 100 FLAAICQDCGRR---KLPVDRIVGGRDTSLGRWPWQVSLRYDGA------HLCGGSLLSG 150
Query: 66 SWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF------- 118
WV+TAAHC + W G + +++ V+ + H +
Sbjct: 151 DWVLTAAHCFPE---RNRVLSRWRVFAGAVAQASPH--GLQLGVQAVVYHGGYLPFRDPN 205
Query: 119 -HNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK 177
+DIAL+ LS P + ++ VCL A + + + C TGWG + G
Sbjct: 206 SEENSNDIALVHLSSPLPLTEY-IQPVCLPAAGQ-ALVDGKICTVTGWGNTQYYGQQAGV 263
Query: 178 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQC---SLKDGR 234
L++ RVP+ + VC ++ C G +G AC GDSGGP C + R
Sbjct: 264 LQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPR 323
Query: 235 WYLAGITSFGSGYCG 249
W L GI S+G+G C
Sbjct: 324 WRLCGIVSWGTG-CA 337
Score = 145 bits (367), Expect = 1e-39
Identities = 52/148 (35%), Positives = 74/148 (50%), Gaps = 5/148 (3%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
AL+ LS P + ++ VCL A + + + C TGWG + G L++ RVP+
Sbjct: 214 ALVHLSSPLPLTEY-IQPVCLPAAGQ-ALVDGKICTVTGWGNTQYYGQQAGVLQEARVPI 271
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQC---SLKDGRWYLAGITS 401
+ VC ++ C G +G AC GDSGGP C + RW L GI S
Sbjct: 272 ISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVS 331
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
+G+GCA + P VYTK+S + WI + I
Sbjct: 332 WGTGCALAQKPGVYTKVSDFREWIFQAI 359
Score = 31.2 bits (71), Expect = 0.55
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 248 CGVGIRYSHRQPRLINGKESIRGAWPWQ 275
CG R++ G+++ G WPWQ
Sbjct: 108 CGRR---KLPVDRIVGGRDTSLGRWPWQ 132
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 204 bits (522), Expect = 8e-64
Identities = 80/233 (34%), Positives = 106/233 (45%), Gaps = 26/233 (11%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G+E+ R WPWQVSL+V R H+CG LIHP WV+TAAHC+ +
Sbjct: 2 VGGQEAPRSKWPWQVSLRV---RDRYWMHFCGGSLIHPQWVLTAAHCVGP---DVKDLAT 55
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
L + + +PV RI VH +F DIALL+L P + + V V
Sbjct: 56 LRVQLREQHLYY---QDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSR-VHTVM 111
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRVPLHNISVCRDKYGDSVELHG 203
L A + P C TGWG V L L+Q++VP+ +C KY
Sbjct: 112 LPPASET-FPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGD 170
Query: 204 GH-------LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
LC G + +C GDSGGPL C +G W AG+ S+G G C
Sbjct: 171 DVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCK-VNGTWLQAGVVSWGEG-CA 219
Score = 140 bits (354), Expect = 5e-39
Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS--KLRQIRV 342
ALL+L P + + V V L A + P C TGWG V L L+Q++V
Sbjct: 93 ALLELEEPVNISSR-VHTVMLPPASET-FPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKV 150
Query: 343 PLHNISVCRDKYGDSVELHGGH-------LCGGQLDGFSGACIGDSGGPLQCSLKDGRWY 395
P+ +C KY LC G + +C GDSGGPL C +G W
Sbjct: 151 PIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCK-VNGTWL 207
Query: 396 LAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
AG+ S+G GCA+ P +YT++++YL WI +
Sbjct: 208 QAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVP 242
Score = 27.2 bits (61), Expect = 8.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 262 INGKESIRGAWPWQ 275
+ G+E+ R WPWQ
Sbjct: 2 VGGQEAPRSKWPWQ 15
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 203 bits (519), Expect = 2e-63
Identities = 61/225 (27%), Positives = 89/225 (39%), Gaps = 23/225 (10%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G+E I + P+ SLQ H CG VL+HP WV+TAAHC+
Sbjct: 2 IGGREVIPHSRPYMASLQRNGS------HLCGGVLVHPKWVLTAAHCLAQR------MAQ 49
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH---NYHHDIALLKLSRPTSARDKGVRAV 144
VLG + + ++ H + +D+ALL+L +R +
Sbjct: 50 LRLVLGLHTL---DSPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRT-IRPL 105
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
L + V +C GWG G L LR++ + + + +C + + L
Sbjct: 106 ALPSKR-QVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPS 164
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+C C GDSGGPL C LAG+ SF S C
Sbjct: 165 MVCLAADSKDQAPCKGDSGGPLVC---GKGRVLAGVLSFSSRVCT 206
Score = 138 bits (350), Expect = 2e-38
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 6/146 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
ALL+L +R + L + V +C GWG G L LR++ + +
Sbjct: 88 ALLQLDGKVKPSRT-IRPLALPSKR-QVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQV 145
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ +C + + L +C C GDSGGPL C LAG+ SF S
Sbjct: 146 LDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGDSGGPLVC---GKGRVLAGVLSFSS 202
Query: 405 G-CAKSGYPDVYTKLSFYLPWIRKQI 429
C P V T ++ Y+ WIRK
Sbjct: 203 RVCTDIFKPPVATAVAPYVSWIRKVT 228
Score = 27.2 bits (61), Expect = 9.8
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 262 INGKESIRGAWPWQ 275
I G+E I + P+
Sbjct: 2 IGGREVIPHSRPYM 15
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 204 bits (520), Expect = 3e-63
Identities = 71/239 (29%), Positives = 99/239 (41%), Gaps = 25/239 (10%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPI-PE 86
+ G ++ G PWQV L R CGA LI WV+TAAHC+ +
Sbjct: 2 VEGSDAEIGMSPWQVMLF----RKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 57
Query: 87 LWTAVLGDWDRTE-EEKSEVRIPVERIRVHEEFH---NYHHDIALLKLSRPTSARDKGVR 142
+G RT E E +E+I +H ++ N DIAL+KL +P + D +
Sbjct: 58 DLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY-IH 116
Query: 143 AVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLV------SKLRQIRVPLHNISVCRDK 194
VCL + + + TGWG +K S L+ + +P+ VC+D
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 195 YGDSVELHGGHLCGGQLDGFSG---ACIGDSGGPLQC-SLKDGRWYLAGITSFGSGYCG 249
+ C G AC GDSGGP S + RWY GI S+G G C
Sbjct: 177 TRIRI--TDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG-CD 232
Score = 136 bits (344), Expect = 2e-37
Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 15/158 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLV------SK 336
AL+KL +P + D + VCL + + + TGWG +K S
Sbjct: 101 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 159
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG---ACIGDSGGPLQC-SLKDG 392
L+ + +P+ VC+D + C G AC GDSGGP S +
Sbjct: 160 LQVVNLPIVERPVCKDSTRIRI--TDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN 217
Query: 393 RWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
RWY GI S+G GC + G YT + WI+K I+
Sbjct: 218 RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255
Score = 27.7 bits (62), Expect = 6.7
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 262 INGKESIRGAWPWQ 275
+ G ++ G PWQ
Sbjct: 2 VEGSDAEIGMSPWQ 15
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 202 bits (516), Expect = 3e-63
Identities = 53/222 (23%), Positives = 77/222 (34%), Gaps = 28/222 (12%)
Query: 30 GKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWT 89
G + +G +P+ V L CG L V+TAAHC+ T
Sbjct: 4 GTRAAQGEFPFMVRLS----------MGCGGALYAQDIVLTAAHCVSGS----GNNTSIT 49
Query: 90 AVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVCLT 147
A G D S V++ ++ F Y D AL+KL++P + +
Sbjct: 50 ATGGVVDLQSS--SAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPIN------QPTLKI 101
Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
+ GWG + G L + VP + + CR + +C
Sbjct: 102 ATTTAY--NQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFI-LVANEMIC 158
Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
G C GDSGGP+ W GI S+G G C
Sbjct: 159 AGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEG-CA 199
Score = 142 bits (361), Expect = 3e-40
Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 9/146 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
AL+KL++P + + + GWG + G L + VP
Sbjct: 86 ALIKLAQPIN------QPTLKIATTTAY--NQGTFTVAGWGANREGGSQQRYLLKANVPF 137
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ + CR + +C G C GDSGGP+ W GI S+G
Sbjct: 138 VSDAACRSSSSFI-LVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGE 196
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
GCA+ G VYT++S + I
Sbjct: 197 GCARKGKYGVYTEVSTFASAIASAAR 222
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 202 bits (516), Expect = 4e-63
Identities = 60/223 (26%), Positives = 94/223 (42%), Gaps = 21/223 (9%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G E + P+ + L +CG L+ +V+TAAHC
Sbjct: 2 IGGNEISPHSRPYMAYYEFLKVGGK--KMFCGGFLVRDKFVLTAAHC---------KGRS 50
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
T LG + +E+++ IPV + H ++ + +DI LLKL R R + VR +
Sbjct: 51 MTVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAK-RTRAVRPLN 109
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L + V P +C GWG+V P G+ L ++++ + VC ++ S
Sbjct: 110 LPRRNA-HVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSY-NRANE 167
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
+C G + DSGGPL C + AGI S+G
Sbjct: 168 ICVGDSKIKGASFEEDSGGPLVC-----KRAAAGIVSYGQTDG 205
Score = 133 bits (338), Expect = 7e-37
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
LLKL R R + VR + L + V P +C GWG+V P G+ L ++++ +
Sbjct: 91 MLLKLVRNAK-RTRAVRPLNLPRRNA-HVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTV 148
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
VC ++ S +C G + DSGGPL C + AGI S+G
Sbjct: 149 QKDQVCESQFQSSY-NRANEICVGDSKIKGASFEEDSGGPLVC-----KRAAAGIVSYGQ 202
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
P V+T++ ++ WI+K +
Sbjct: 203 TDGS--APQVFTRVLSFVSWIKKTMK 226
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 207 bits (529), Expect = 9e-63
Identities = 74/263 (28%), Positives = 109/263 (41%), Gaps = 25/263 (9%)
Query: 4 LCDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLI 63
L + + + S+ R++ G ++ G PWQV L R CGA LI
Sbjct: 143 LFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLF----RKSPQELLCGASLI 198
Query: 64 HPSWVVTAAHCIHNDIFSLPI-PELWTAVLGDWDRTEEEKS-EVRIPVERIRVHEEFH-- 119
WV+TAAHC+ + +G RT E++ E +E+I +H ++
Sbjct: 199 SDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWR 258
Query: 120 -NYHHDIALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLV- 175
N DIAL+KL +P + D + VCL + + + TGWG +K
Sbjct: 259 ENLDRDIALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANV 317
Query: 176 -----SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG---ACIGDSGGPLQ 227
S L+ + +P+ VC+D + C G AC GDSGGP
Sbjct: 318 GKGQPSVLQVVNLPIVERPVCKDSTRIRI--TDNMFCAGYKPDEGKRGDACEGDSGGPFV 375
Query: 228 C-SLKDGRWYLAGITSFGSGYCG 249
S + RWY GI S+G G C
Sbjct: 376 MKSPFNNRWYQMGIVSWGEG-CD 397
Score = 132 bits (333), Expect = 2e-34
Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 15/158 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLV------SK 336
AL+KL +P + D + VCL + + + TGWG +K S
Sbjct: 266 ALMKLKKPVAFSDY-IHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSV 324
Query: 337 LRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSG---ACIGDSGGPLQC-SLKDG 392
L+ + +P+ VC+D + C G AC GDSGGP S +
Sbjct: 325 LQVVNLPIVERPVCKDSTRIRI--TDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN 382
Query: 393 RWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
RWY GI S+G GC + G YT + WI+K I+
Sbjct: 383 RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 420
Score = 34.1 bits (78), Expect = 0.080
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 248 CGVGIRYSHRQPRLINGKESIRGAWPWQ 275
+ S+ R++ G ++ G PWQ
Sbjct: 153 TERELLESYIDGRIVEGSDAEIGMSPWQ 180
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 206 bits (527), Expect = 9e-63
Identities = 60/246 (24%), Positives = 98/246 (39%), Gaps = 23/246 (9%)
Query: 13 DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAA 72
CG + ++ ++I G+++ G +PWQV + G L+ W++TAA
Sbjct: 144 VCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNI--------HGRGGGALLGDRWILTAA 195
Query: 73 HCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-----HNYHHDIAL 127
H ++ LG + E K P+ R+ VH ++ +N+ DIAL
Sbjct: 196 HTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNH-PIRRVSVHPDYRQDESYNFEGDIAL 254
Query: 128 LKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN 187
L+L + + +CL D D + +G+G + + + LR +R+P+ N
Sbjct: 255 LELENSVTLGPN-LLPICLPDNDTF-YDLGLMGYVSGFGVM--EEKIAHDLRFVRLPVAN 310
Query: 188 ISVCRDKY---GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGITSF 243
C + C G AC GDSGG + RW GI S+
Sbjct: 311 PQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSW 370
Query: 244 GSGYCG 249
G G C
Sbjct: 371 GIG-CS 375
Score = 126 bits (318), Expect = 1e-32
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
ALL+L + + +CL D D + +G+G ++ + LR +R+P+
Sbjct: 253 ALLELENSVTLGPN-LLPICLPDNDTF-YDLGLMGYVSGFGVME--EKIAHDLRFVRLPV 308
Query: 345 HNISVCRDKY---GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGIT 400
N C + C G AC GDSGG + RW GI
Sbjct: 309 ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIV 368
Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
S+G GC++ YTK+ Y+ WI+K++
Sbjct: 369 SWGIGCSRG--YGFYTKVLNYVDWIKKEME 396
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 200 bits (510), Expect = 3e-62
Identities = 62/223 (27%), Positives = 92/223 (41%), Gaps = 23/223 (10%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G ESI + P+ L ++ + CG LI +V+TAAHC +
Sbjct: 2 IGGVESIPHSRPYMAHLDIVTEKGLR--VICGGFLISRQFVLTAAHCKGRE--------- 50
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
T +LG D + E ++ +I VE+ +HE + HDI LLKL + V V
Sbjct: 51 ITVILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVE-LTPAVNVVP 109
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L ++P C A GWG+ + LR++ + + + C D +
Sbjct: 110 LPSPSD-FIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRY---YEYKFQ 165
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
+C G A +GDSGGPL C GI S+G
Sbjct: 166 VCVGSPTTLRAAFMGDSGGPLLC-----AGVAHGIVSYGHPDA 203
Score = 134 bits (341), Expect = 2e-37
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 12/146 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
LLKL + V V L ++P C A GWG+ + LR++ + +
Sbjct: 91 MLLKLEKKVE-LTPAVNVVPLPSPSD-FIHPGAMCWAAGWGKTGVRDPTSYTLREVELRI 148
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ C D + +C G A +GDSGGPL C GI S+G
Sbjct: 149 MDEKACVDYRY---YEYKFQVCVGSPTTLRAAFMGDSGGPLLC-----AGVAHGIVSYGH 200
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
AK P ++T++S Y+PWI IN
Sbjct: 201 PDAK--PPAIFTRVSTYVPWINAVIN 224
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 200 bits (510), Expect = 3e-62
Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 22/223 (9%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G E+ + P+ L + + CG LI +V+TAAHC +
Sbjct: 2 IGGHEAKPHSRPYMAYLMIWDQK---SLKRCGGFLIRDDFVLTAAHCWGSS--------- 49
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
LG + E+E ++ IPV+R H + N+ +DI LL+L R R + V+ +
Sbjct: 50 INVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAK-RTRAVQPLR 108
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L V P Q C GWG+ P G L+++++ + C
Sbjct: 109 LPSNK-AQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYY-DSTIE 166
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
LC G + + GDSGGPL C GI S+G
Sbjct: 167 LCVGDPEIKKTSFKGDSGGPLVC-----NKVAQGIVSYGRNNG 204
Score = 133 bits (338), Expect = 6e-37
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 10/145 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
LL+L R R + V+ + L V P Q C GWG+ P G L+++++ +
Sbjct: 90 MLLQLERKAK-RTRAVQPLRLPSNK-AQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTV 147
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
C LC G + + GDSGGPL C GI S+G
Sbjct: 148 QEDRKCESDLRHYY-DSTIELCVGDPEIKKTSFKGDSGGPLVC-----NKVAQGIVSYGR 201
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
P TK+S ++ WI+K +
Sbjct: 202 NNGM--PPRACTKVSSFVHWIKKTM 224
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 200 bits (510), Expect = 3e-62
Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 23/223 (10%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G E+ + P+ L H CG L+ +V+TAAHC+ +
Sbjct: 2 IGGHEAKPHSRPYMAFLLFKTSG---KSHICGGFLVREDFVLTAAHCLGSS--------- 49
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
LG + E E+++ IPV R H ++ +DI LLKL+R V +
Sbjct: 50 INVTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKAD-ITDKVSPIN 108
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L + V P C GWGR+ KL+++ + + + C ++ + +
Sbjct: 109 LPRSLA-EVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYI--PFTQ 165
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
+C G + GDSGGPL C GI S+G
Sbjct: 166 ICAGDPSKRKNSFSGDSGGPLVC-----NGVAQGIVSYGRNDG 203
Score = 134 bits (340), Expect = 4e-37
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
LLKL+R V + L + V P C GWGR+ KL+++ + +
Sbjct: 90 MLLKLTRKAD-ITDKVSPINLPRSLA-EVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEV 147
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ C ++ + + +C G + GDSGGPL C GI S+G
Sbjct: 148 QSEEKCIARFKNYI--PFTQICAGDPSKRKNSFSGDSGGPLVC-----NGVAQGIVSYGR 200
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
PDVYT++S +L WI +
Sbjct: 201 NDGT--TPDVYTRISSFLSWIHSTMR 224
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 200 bits (510), Expect = 4e-62
Identities = 58/231 (25%), Positives = 91/231 (39%), Gaps = 23/231 (9%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G+++ G +PWQV + G L+ W++TAAH ++
Sbjct: 2 IGGQKAKMGNFPWQVFTNI--------HGRGGGALLGDRWILTAAHTLYPKEHEAQSNAS 53
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-----HNYHHDIALLKLSRPTSARDKGVR 142
LG + E K P+ R+ VH ++ +N+ DIALL+L + +
Sbjct: 54 LDVFLGHTNVEELMKLGNH-PIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPN-LL 111
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKY---GDSV 199
+CL D D + +G+G + + + LR +R+P+ N C +
Sbjct: 112 PICLPDNDTF-YDLGLMGYVSGFGVM--EEKIAHDLRFVRLPVANPQACENWLRGKNRMD 168
Query: 200 ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGITSFGSGYCG 249
C G AC GDSGG + RW GI S+G G C
Sbjct: 169 VFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG-CS 218
Score = 128 bits (324), Expect = 8e-35
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
ALL+L + + +CL D D + +G+G ++ + LR +R+P+
Sbjct: 96 ALLELENSVTLGPN-LLPICLPDNDTF-YDLGLMGYVSGFGVME--EKIAHDLRFVRLPV 151
Query: 345 HNISVCRDKY---GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKD-GRWYLAGIT 400
N C + C G AC GDSGG + RW GI
Sbjct: 152 ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIV 211
Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
S+G GC++ YTK+ Y+ WI+K++
Sbjct: 212 SWGIGCSRG--YGFYTKVLNYVDWIKKEME 239
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 199 bits (509), Expect = 6e-62
Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 30/232 (12%)
Query: 26 RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
+I GKE + P+ S+Q H CG VLI P WV+TAAHC +
Sbjct: 2 EIIGGKEVSPHSRPFMASIQYGGH------HVCGGVLIDPQWVLTAAHCQYRF----TKG 51
Query: 86 ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRP---TSARDKG 140
+ T VLG ++ E S+ + +++ +DI L+KL
Sbjct: 52 QSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKH---- 107
Query: 141 VRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVC--RDKYGD 197
V+ + + K + +C TGWG P S LR++ V + + +C + Y
Sbjct: 108 VKMLHI--RSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNG 165
Query: 198 SVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+ +C G G +C GD+GGPL C + I S G CG
Sbjct: 166 DPFITKDMVCAGDAKGQKDSCKGDAGGPLIC-----KGVFHAIVSGGHE-CG 211
Score = 131 bits (332), Expect = 7e-36
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 18/152 (11%)
Query: 285 ALLKLSRP---TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
L+KL V+ + + K + +C TGWG P S LR++
Sbjct: 94 MLVKLQTAAKLNKH----VKMLHI--RSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREV 147
Query: 341 RVPLHNISVC--RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAG 398
V + + +C + Y + +C G G +C GD+GGPL C +
Sbjct: 148 TVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLIC-----KGVFHA 202
Query: 399 ITSFGSGCAKSGYPDVYTKLSF-YLPWIRKQI 429
I S G C + P +YT L+ Y WI+ +
Sbjct: 203 IVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234
Score = 28.7 bits (65), Expect = 3.7
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 260 RLINGKESIRGAWPWQ 275
+I GKE + P+
Sbjct: 2 EIIGGKEVSPHSRPFM 17
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 199 bits (507), Expect = 1e-61
Identities = 57/231 (24%), Positives = 92/231 (39%), Gaps = 24/231 (10%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
G+++ G +PWQV + L++ +WV+TAAH ++
Sbjct: 2 YGGQKAKPGDFPWQVLIL--------GGTTAAGALLYDNWVLTAAHAVYEQKHD---ASA 50
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH---NYHHDIALLKLSRPTSARDKGVRAV 144
+G R + E + +HE + + +DIAL+KL+ + +
Sbjct: 51 LDIRMGTLKRLSPH--YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSN-ITPI 107
Query: 145 CL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
CL + + A+GWG + +G L L + +P+ + C Y G
Sbjct: 108 CLPRKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRG 166
Query: 204 ----GHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGYCG 249
LC G G +C GDSGG L RW++ GI S+GS CG
Sbjct: 167 SVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCG 217
Score = 133 bits (338), Expect = 7e-37
Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 285 ALLKLSRPTSARDKGVRAVCL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP 343
AL+KL+ + +CL + + A+GWG + +G L L + +P
Sbjct: 90 ALIKLNNKVVINSN-ITPICLPRKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIP 147
Query: 344 LHNISVCRDKYGDSVELHG----GHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAG 398
+ + C Y G LC G G +C GDSGG L RW++ G
Sbjct: 148 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGG 207
Query: 399 ITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
I S+GS C ++G VYTK+ Y+PWI I+
Sbjct: 208 IVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 198 bits (505), Expect = 1e-61
Identities = 58/224 (25%), Positives = 87/224 (38%), Gaps = 30/224 (13%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G+++ +P+ S+Q G H+CG LIH +V+TAA C + P +
Sbjct: 2 VGGRKARPRQFPFLASIQ----NQGR--HFCGGALIHARFVMTAASCFQSQ-----NPGV 50
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
T VLG +D E+ + + +D+ LL+L R + V +
Sbjct: 51 STVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREAN-LTSSVTILP 109
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L + V +C GWG + G L R + V + CR +
Sbjct: 110 LPLQN-ATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP----------NN 158
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+C G L G C GD G PL C G+ SF G CG
Sbjct: 159 VCTGVLTRRGGICNGDGGTPLVC-----EGLAHGVASFSLGPCG 197
Score = 130 bits (330), Expect = 9e-36
Identities = 38/146 (26%), Positives = 55/146 (37%), Gaps = 18/146 (12%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
LL+L R + V + L + V +C GWG + G L R + V +
Sbjct: 91 MLLQLDREAN-LTSSVTILPLPLQN-ATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTV 148
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
CR ++C G L G C GD G PL C G+ SF
Sbjct: 149 TPEDQCRP----------NNVCTGVLTRRGGICNGDGGTPLVC-----EGLAHGVASFSL 193
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
G PD +T+++ + WI +N
Sbjct: 194 GPCGR-GPDFFTRVALFRDWIDGVLN 218
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 198 bits (505), Expect = 2e-61
Identities = 60/224 (26%), Positives = 91/224 (40%), Gaps = 22/224 (9%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G+E+ A P+ S+Q+ H CG VL+ WV++AAHC
Sbjct: 2 LGGREAEAHARPYMASVQLNGA------HLCGGVLVAEQWVLSAAHC-----LEDAADGK 50
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
+LG ++ E S+ V R H + HD+ LL+LS + VR +
Sbjct: 51 VQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKAT-LGPAVRPLP 109
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
D R V P C GWG V G L+ + +P+ + + C + +
Sbjct: 110 WQRVD-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERL 168
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+C +C GD+GGPL C L G+ + GS CG
Sbjct: 169 MCAES--NRRDSCKGDAGGPLVC-----GGVLEGVVTSGSRVCG 205
Score = 129 bits (327), Expect = 2e-35
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 10/146 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
LL+LS + VR + D R V P C GWG V G L+ + +P+
Sbjct: 91 LLLQLSEKAT-LGPAVRPLPWQRVD-RDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPV 148
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ + C + + +C +C GD+GGPL C L G+ + GS
Sbjct: 149 LDRATCNRRTHHDGAITERLMCAES--NRRDSCKGDAGGPLVC-----GGVLEGVVTSGS 201
Query: 405 G-CAKSGYPDVYTKLSFYLPWIRKQI 429
C P +YT+++ Y WI +
Sbjct: 202 RVCGNRKKPGIYTRVASYAAWIDSVL 227
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 203 bits (519), Expect = 2e-61
Identities = 75/260 (28%), Positives = 105/260 (40%), Gaps = 38/260 (14%)
Query: 11 ARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVT 70
DCG + R+ NG E + PW L+ CG +I +++T
Sbjct: 108 NFDCGNFL-----SQRVSNGYEVKLSSRPWMALLRYQQFGES--RFLCGGAMISERYILT 160
Query: 71 AAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSE------------VRIPVERIRVHEEF 118
AAHC+H +L+ LG+ + EE V + +E+ +HE++
Sbjct: 161 AAHCVHG-----LQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKY 215
Query: 119 H--NYHHDIALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDL 174
+ HDIALLKL+R + ++ +CL TD K TGWG + G
Sbjct: 216 DARHIMHDIALLKLNRSVPFQKH-IKPICLPITDELKEKAEQISTYFVTGWGTTE-NGSS 273
Query: 175 VSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK--- 231
L Q VPL S C Y +V LC G D +C GDSGGPLQ +
Sbjct: 274 SDVLLQANVPLQPRSACSQAYRRAV--PLSQLCVGGGDL-QDSCKGDSGGPLQAPAQYLG 330
Query: 232 --DGRWYLAGITSFGSGYCG 249
+ GI S G CG
Sbjct: 331 EYAPKMVEFGIVSQGVVTCG 350
Score = 133 bits (335), Expect = 6e-35
Identities = 49/154 (31%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
ALLKL+R + ++ +CL TD K TGWG + G L Q V
Sbjct: 225 ALLKLNRSVPFQKH-IKPICLPITDELKEKAEQISTYFVTGWGTTE-NGSSSDVLLQANV 282
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK-----DGRWYLA 397
PL S C Y +V LC G D +C GDSGGPLQ + +
Sbjct: 283 PLQPRSACSQAYRRAV--PLSQLCVGGGDL-QDSCKGDSGGPLQAPAQYLGEYAPKMVEF 339
Query: 398 GITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
GI S G C + P +YT + Y+ WI +
Sbjct: 340 GIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMA 373
Score = 31.8 bits (72), Expect = 0.46
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 218 CIGDSGGPLQCSLKDGRWYLAGITS---FGSGYCGVGIRYSHRQPRLINGKESIRGAWPW 274
C +G C + + + S + CG + R+ NG E + PW
Sbjct: 78 CGEFNGVRHFCCPSANIQHNSKVMSLFKDENFDCGNFL-----SQRVSNGYEVKLSSRPW 132
Query: 275 QNLI 278
L+
Sbjct: 133 MALL 136
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 203 bits (517), Expect = 3e-61
Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 25/254 (9%)
Query: 12 RDCGVGIRYSHRQPRLINGK-ESIRGAWPWQVSLQV--LHPRLGLMPHWCGAVLIHPSWV 68
CG+ ++ E+ G +PW V++ + P G CG LI PS V
Sbjct: 116 SFCGI-RNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVV 174
Query: 69 VTAAHCIHNDIFSLPIPELWTAVLGDWD--RTEEEKSEVRIPVERIRVHEEFH--NYHHD 124
+T AHC+++ + G+WD +E + ++ +H F+ +D
Sbjct: 175 LTGAHCVNS---YQSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVND 231
Query: 125 IALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV--SKLRQIR 182
+ALL L RP D + +CL + + +C A+GWG+ + + L++I+
Sbjct: 232 VALLLLDRPLVQADN-IGTICLPQQSQIFDS--TECFASGWGKKEFGSRHRYSNILKKIQ 288
Query: 183 VPLHNISVCRDKY-----GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL--KDGRW 235
+P + C+ G L +C G G C GD G PL C R+
Sbjct: 289 LPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQG-KDTCTGDGGSPLFCPDPRNPSRY 347
Query: 236 YLAGITSFGSGYCG 249
GI ++G G CG
Sbjct: 348 MQMGIVAWGIG-CG 360
Score = 132 bits (334), Expect = 6e-35
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV--SKLRQIRV 342
ALL L RP D + +CL + + +C A+GWG+ + + L++I++
Sbjct: 233 ALLLLDRPLVQADN-IGTICLPQQSQIFDS--TECFASGWGKKEFGSRHRYSNILKKIQL 289
Query: 343 PLHNISVCRDKY-----GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSL--KDGRWY 395
P + C+ G L +C G G C GD G PL C R+
Sbjct: 290 PTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQG-KDTCTGDGGSPLFCPDPRNPSRYM 348
Query: 396 LAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
GI ++G GC P VY ++ + WI +++
Sbjct: 349 QMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEM 382
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 202 bits (516), Expect = 5e-61
Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 24/247 (9%)
Query: 17 GIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIH 76
G+ ++ G+++ G +PWQV + L++ +WV+TAAH ++
Sbjct: 152 GLSARTTGGQIYGGQKAKPGDFPWQVLIL--------GGTTAAGALLYDNWVLTAAHAVY 203
Query: 77 NDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH---NYHHDIALLKLSRP 133
+G R + E + +HE + + +DIAL+KL+
Sbjct: 204 EQKHD---ASALDIRMGTLKRLSPH--YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNK 258
Query: 134 TSARDKGVRAVCL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCR 192
+ +CL + + A+GWG + G L L + +P+ + C
Sbjct: 259 VVINSN-ITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMYVDIPIVDHQKCT 316
Query: 193 DKYGDSVELHG----GHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAGITSFGSGY 247
Y G LC G G +C GDSGG L RW++ GI S+GS
Sbjct: 317 AAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMN 376
Query: 248 CGVGIRY 254
CG +Y
Sbjct: 377 CGEAGQY 383
Score = 131 bits (332), Expect = 1e-34
Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Query: 285 ALLKLSRPTSARDKGVRAVCL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP 343
AL+KL+ + +CL + + A+GWG + G L L + +P
Sbjct: 251 ALIKLNNKVVINSN-ITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMYVDIP 308
Query: 344 LHNISVCRDKYGDSVELHG----GHLCGGQLDGFSGACIGDSGGPLQCSLK-DGRWYLAG 398
+ + C Y G LC G G +C GDSGG L RW++ G
Sbjct: 309 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGG 368
Query: 399 ITSFGS-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
I S+GS C ++G VYTK+ Y+PWI I+
Sbjct: 369 IVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 401
Score = 32.8 bits (75), Expect = 0.22
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 221 DSGGPLQCSLKDGRW-YLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAWPWQ 275
+ G C DG W G S G+ ++ G+++ G +PWQ
Sbjct: 122 VNDGKYVCE-ADGFWTSSKGEKSLPVCEPVCGLSARTTGGQIYGGQKAKPGDFPWQ 176
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 196 bits (502), Expect = 5e-61
Identities = 61/223 (27%), Positives = 86/223 (38%), Gaps = 23/223 (10%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G E + P+ L+++ +CG LI ++V+TAAHC
Sbjct: 2 IGGTECKPHSRPYMAYLEIVTSNGPS--KFCGGFLIRRNFVLTAAHCAGRS--------- 50
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
T LG + TEEE + ++ V + H ++ HHDI LLKL S V +
Sbjct: 51 ITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKAS-LTLAVGTLP 109
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
V P + C GWGR L+++++ L + C H
Sbjct: 110 FPSQFNF-VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRD---FDHNLQ 165
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYC 248
LC G A GDSGGPL C GI S+G
Sbjct: 166 LCVGNPRKTKSAFKGDSGGPLLC-----AGVAQGIVSYGRSDA 203
Score = 128 bits (324), Expect = 6e-35
Identities = 43/146 (29%), Positives = 57/146 (39%), Gaps = 12/146 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
LLKL S V + V P + C GWGR L+++++ L
Sbjct: 91 MLLKLKEKAS-LTLAVGTLPFPSQFNF-VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRL 148
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ C H LC G A GDSGGPL C GI S+G
Sbjct: 149 MDPQACSHFRD---FDHNLQLCVGNPRKTKSAFKGDSGGPLLC-----AGVAQGIVSYGR 200
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
AK P V+T++S Y PWI + +
Sbjct: 201 SDAK--PPAVFTRISHYRPWINQILQ 224
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 195 bits (499), Expect = 1e-60
Identities = 62/224 (27%), Positives = 89/224 (39%), Gaps = 25/224 (11%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G+ES + P+ LQ+ P CG L+ +V+TAAHC ++
Sbjct: 2 IGGRESRPHSRPYMAYLQIQSPA---GQSRCGGFLVREDFVLTAAHCWGSN--------- 49
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
LG + E ++ I R H ++ +DI LL+LSR R++ V V
Sbjct: 50 INVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVR-RNRNVNPVA 108
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L A + P C GWGRV LR++++ + C +G
Sbjct: 109 LPRAQ-EGLRPGTLCTVAGWGRVSM-RRGTDTLREVQLRVQRDRQCLRIFGSYD--PRRQ 164
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+C G A GDSGGPL C GI S+G G
Sbjct: 165 ICVGDRRERKAAFKGDSGGPLLC-----NNVAHGIVSYGKS-SG 202
Score = 129 bits (328), Expect = 2e-35
Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 12/146 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
LL+LSR R++ V V L A + P C GWGRV LR++++ +
Sbjct: 90 MLLQLSRRVR-RNRNVNPVALPRAQ-EGLRPGTLCTVAGWGRVSM-RRGTDTLREVQLRV 146
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
C +G +C G A GDSGGPL C GI S+G
Sbjct: 147 QRDRQCLRIFGSYD--PRRQICVGDRRERKAAFKGDSGGPLLC-----NNVAHGIVSYGK 199
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQIN 430
P+V+T++S +LPWIR +
Sbjct: 200 SSGV--PPEVFTRVSSFLPWIRTTMR 223
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 195 bits (497), Expect = 2e-60
Identities = 68/228 (29%), Positives = 103/228 (45%), Gaps = 33/228 (14%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G E+ + P+ SLQ+ R H+CG LIHPS+V+TAAHC+ + L
Sbjct: 2 VGGHEAQPHSRPYMASLQM---RGNPGSHFCGGTLIHPSFVLTAAHCLRD-----IPQRL 53
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHE-EFHNYHHDIALLKLSRP---TSARDKGVRA 143
VLG + +E ++ V ++ ++ + N +DI L++LS P +++ V
Sbjct: 54 VNVVLGAHNVRTQEPTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSAS----VAT 109
Query: 144 VCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
V L D +PV QC+A GWGRV L+++ V + CR
Sbjct: 110 VQLPQQD-QPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVT-FFCRPH--------- 158
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
++C +G C GDSGGPL C + GI SF C
Sbjct: 159 -NICTFVPRRKAGICFGDSGGPLIC-----DGIIQGIDSFVIWGCATR 200
Score = 127 bits (322), Expect = 9e-35
Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 25/149 (16%)
Query: 285 ALLKLSRP---TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR 341
L++LS P +++ V V L D +PV QC+A GWGRV L+++
Sbjct: 93 LLIQLSSPANLSAS----VATVQLPQQD-QPVPHGTQCLAMGWGRVGAHDPPAQVLQELN 147
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
V + CR ++C +G C GDSGGPL C + GI S
Sbjct: 148 VTVVT-FFCRPH----------NICTFVPRRKAGICFGDSGGPLIC-----DGIIQGIDS 191
Query: 402 FGS-GCAKSGYPDVYTKLSFYLPWIRKQI 429
F GCA +PD +T+++ Y+ WIR +
Sbjct: 192 FVIWGCATRLFPDFFTRVALYVDWIRSTL 220
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 194 bits (496), Expect = 3e-60
Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 32/226 (14%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G+ + AWP+ VSLQ+ H+CGA LI P++V++AAHC+ N
Sbjct: 2 VGGRRARPHAWPFMVSLQLR------GGHFCGATLIAPNFVMSAAHCVAN-----VNVRA 50
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
VLG + + E + V+RI + N +DI +L+L+ + + V+
Sbjct: 51 VRVVLGAHNLSRREPTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSAT-INANVQVAQ 108
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L +R + QC+A GWG + + S L+++ V + S+CR +
Sbjct: 109 LPAQGRR-LGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRR----------SN 156
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
+C +G C GDSG PL C + GI SF G C G
Sbjct: 157 VCTLVRGRQAGVCFGDSGSPLVC-----NGLIHGIASFVRGGCASG 197
Score = 130 bits (329), Expect = 1e-35
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 19/146 (13%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
+L+L+ + + V+ L +R + QC+A GWG + + S L+++ V +
Sbjct: 90 VILQLNGSAT-INANVQVAQLPAQGRR-LGNGVQCLAMGWGLLGRNRGIASVLQELNVTV 147
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
S+CR ++C +G C GDSG PL C + GI SF
Sbjct: 148 VT-SLCRR----------SNVCTLVRGRQAGVCFGDSGSPLVC-----NGLIHGIASFVR 191
Query: 405 -GCAKSGYPDVYTKLSFYLPWIRKQI 429
GCA YPD + ++ ++ WI I
Sbjct: 192 GGCASGLYPDAFAPVAQFVNWIDSII 217
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 204 bits (520), Expect = 5e-60
Identities = 72/243 (29%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 13 DCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAA 72
CGV R R+ R++ GK + G PWQV+++ CG + I W++TAA
Sbjct: 308 SCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASG------ITCGGIYIGGCWILTAA 361
Query: 73 HCIHNDIFSLPIPELWTAVLGDWDRTE-EEKSEVRIPVERIRVHEEFH--NYHHDIALLK 129
HC+ + D + K V V+RI HE ++ Y +DIAL++
Sbjct: 362 HCLRA-----SKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIE 416
Query: 130 LSRP---TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLH 186
+ + C+ + P C+ +GWGR K V L+ V L
Sbjct: 417 MKKDGNKKDCELPRSIPACVPWSP-YLFQPNDTCIVSGWGREKDNER-VFSLQWGEVKL- 473
Query: 187 NISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
IS C YG+ C G DG AC GDSGGPL C + Y+ G+ S+G
Sbjct: 474 -ISNCSKFYGNRF-YEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGEN 531
Query: 247 YCG 249
CG
Sbjct: 532 -CG 533
Score = 141 bits (358), Expect = 3e-37
Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 8/149 (5%)
Query: 285 ALLKLSRP---TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIR 341
AL+++ + C+ + P C+ +GWGR K V L+
Sbjct: 413 ALIEMKKDGNKKDCELPRSIPACVPWSP-YLFQPNDTCIVSGWGREKDNER-VFSLQWGE 470
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
V L IS C YG+ C G DG AC GDSGGPL C + Y+ G+ S
Sbjct: 471 VKL--ISNCSKFYGNRF-YEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVS 527
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
+G C K +P VYTK++ Y WI +
Sbjct: 528 WGENCGKPEFPGVYTKVANYFDWISYHVG 556
Score = 37.6 bits (87), Expect = 0.007
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 248 CGVGIRYSHRQPRLINGKESIRGAWPWQ 275
CGV R R+ R++ GK + G PWQ
Sbjct: 309 CGVKNRMHIRRKRIVGGKRAQLGDLPWQ 336
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 193 bits (494), Expect = 9e-60
Identities = 59/224 (26%), Positives = 84/224 (37%), Gaps = 24/224 (10%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G G PW VSL+ + H+CG L+ W++TA C +
Sbjct: 2 VGGHP---GNSPWTVSLRNRQGQ-----HFCGGSLVKEQWILTARQCFSS---CHMPLTG 50
Query: 88 WTAVLGDW--DRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
+ LG + E S R+PV ++ + LLKL R + + V +C
Sbjct: 51 YEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSG----SQLVLLKLERSVTLNQR-VALIC 105
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L V P +C GWG K G+ + L + + + C K+ V
Sbjct: 106 LPPEWYV-VPPGTKCEIAGWGETKGTGN-DTVLNVALLNVISNQECNIKHRGRV--RESE 161
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+C L GAC GD GGPL C W L GI C
Sbjct: 162 MCTEGLLAPVGACEGDYGGPLAC-FTHNSWVLEGIIIPNRV-CA 203
Score = 140 bits (355), Expect = 3e-39
Identities = 46/145 (31%), Positives = 65/145 (44%), Gaps = 6/145 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
LLKL R + + V +CL V P +C GWG K G+ + L + +
Sbjct: 87 VLLKLERSVTLNQR-VALICLPPEWYV-VPPGTKCEIAGWGETKGTGN-DTVLNVALLNV 143
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ C K+ V +C L GAC GD GGPL C W L GI
Sbjct: 144 ISNQECNIKHRGRV--RESEMCTEGLLAPVGACEGDYGGPLAC-FTHNSWVLEGIIIPNR 200
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
CA+S +P V+T++S ++ WI K +
Sbjct: 201 VCARSRWPAVFTRVSVFVDWIHKVM 225
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 193 bits (492), Expect = 1e-59
Identities = 67/225 (29%), Positives = 98/225 (43%), Gaps = 29/225 (12%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G E++ +WP Q +L + ++CG LI P W++TAAHC+
Sbjct: 2 VGGVEAVPNSWPHQAALFID------DMYFCGGSLISPEWILTAAHCMDG-------AGF 48
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
VLG + E+E ++V I VHE + +DIA+++L P + + V
Sbjct: 49 VDVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAA-IATVG 107
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRDKYGDSVELHGG 204
L D V TGWG +S LRQ+ VP+ + + C YG + G
Sbjct: 108 LPSTD---VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYG---IVTDG 161
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
++C G G C GDSGGPL GITSFG+
Sbjct: 162 NICIDSTGG-KGTCNGDSGGPLNY-----NGLTYGITSFGAAAGC 200
Score = 124 bits (314), Expect = 2e-33
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 15/149 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVP 343
A+++L P + + V L D V TGWG +S LRQ+ VP
Sbjct: 89 AVIRLPVPVTLTAA-IATVGLPSTD---VGVGTVVTPTGWGLPSDSALGISDVLRQVDVP 144
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
+ + + C YG + G++C G G C GDSGGPL + GITSFG
Sbjct: 145 IMSNADCDAVYG---IVTDGNICIDSTGG-KGTCNGDSGGPLNYN-----GLTYGITSFG 195
Query: 404 SG-CAKSGYPDVYTKLSFYLPWIRKQINI 431
+ ++GYPD +T+++++L WI+ Q I
Sbjct: 196 AAAGCEAGYPDAFTRVTYFLDWIQTQTGI 224
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 193 bits (492), Expect = 2e-59
Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 22/224 (9%)
Query: 30 GKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWT 89
G+++ PW V+++ CG ++ +V+TAAHC+ + PE
Sbjct: 3 GEKTDIKQVPWTVAVRTYPGEES---LTCGGAILSQWFVLTAAHCVFD-----QKPETIV 54
Query: 90 AVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVCLT 147
+ E+ P + +DIA+L+LSRP + L
Sbjct: 55 IQYESTNLWEDP--GKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLP 112
Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLC 207
D + RP + +G+G + L+ ++ + ++ CR KYG L C
Sbjct: 113 DIEFRPK-TGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPI-FLSLQVFC 170
Query: 208 GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
+ GD+G P + L G+ ++ G
Sbjct: 171 AQK--VGVSLESGDAGDPTVQ-----QDTLVGVAAYFPK-RPEG 206
Score = 140 bits (355), Expect = 2e-39
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 10/145 (6%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
A+L+LSRP + L D + RP + +G+G + L+ ++ +
Sbjct: 91 AILELSRPLKLDGLKSKPAKLPDIEFRPK-TGSDVLVSGYGDGQTMDPKDHDLKSAQLTV 149
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
++ CR KYG L C + GD+G P + L G+ ++
Sbjct: 150 VDLDECRTKYGPI-FLSLQVFCAQK--VGVSLESGDAGDPTVQ-----QDTLVGVAAYFP 201
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
+ G P+V+TK+ Y+ WI+ I
Sbjct: 202 KRPE-GAPEVFTKVGSYVSWIQDII 225
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 193 bits (493), Expect = 2e-59
Identities = 61/224 (27%), Positives = 89/224 (39%), Gaps = 23/224 (10%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+NG + R W VSL+ + H CG LI SWV+TA C + +
Sbjct: 2 VNGIPT-RTNIGWMVSLRYRNK------HICGGSLIKESWVLTARQCFPS-----RDLKD 49
Query: 88 WTAVLGDWD--RTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVC 145
+ A LG D +EK + + V ++ E D+ L+KL+RP D V +
Sbjct: 50 YEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEGS----DLVLMKLARPAVLDDF-VSTID 104
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L + + K C GWG + LR + + C + V L+
Sbjct: 105 LPNYGST-IPEKTSCSVYGWGYTGL-INYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESE 162
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+C G SG C GD GGPL C + + G+ G G C
Sbjct: 163 ICAGAEKIGSGPCEGDYGGPLVCE-QHKMRMVLGVIVPGRG-CA 204
Score = 141 bits (358), Expect = 1e-39
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
L+KL+RP D V + L + + K C GWG + LR + +
Sbjct: 86 VLMKLARPAVLDDF-VSTIDLPNYGST-IPEKTSCSVYGWGYTGL-INYDGLLRVAHLYI 142
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
C + V L+ +C G SG C GD GGPL C + + G+ G
Sbjct: 143 MGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCE-QHKMRMVLGVIVPGR 201
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
GCA P ++ ++++Y WI K I
Sbjct: 202 GCAIPNRPGIFVRVAYYAKWIHKII 226
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 194 bits (496), Expect = 8e-59
Identities = 61/256 (23%), Positives = 97/256 (37%), Gaps = 40/256 (15%)
Query: 14 CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
CGV + R+I G ++ +PWQV W G LI+ WV+TAAH
Sbjct: 70 CGVPREPFEEKQRIIGGSDADIKNFPWQVFFDN---------PWAGGALINEYWVLTAAH 120
Query: 74 CIHNDIFSLPIPELWTAVLGDWD-RTEEEKSEVRIPVERIRVHEEF---------HNYHH 123
+ T +G +T + E + +H + N+ +
Sbjct: 121 VVEG-------NREPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDN 173
Query: 124 DIALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIR 182
DIAL++L P V +CL + +GWGR + K D +L+ R
Sbjct: 174 DIALVRLKDPVKMGPT-VSPICLPGTSSDYNLMDGDLGLISGWGRTE-KRDRAVRLKAAR 231
Query: 183 VPLHNISVCRDKYGDSVELHGGH-------LCGGQLDGFSGACIGDSGGPLQC--SLKDG 233
+P+ + C++ + +C G G +C GDSGG
Sbjct: 232 LPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMD-SCKGDSGGAFAVQDPNDKT 290
Query: 234 RWYLAGITSFGSGYCG 249
++Y AG+ S+G CG
Sbjct: 291 KFYAAGLVSWGPQ-CG 305
Score = 127 bits (322), Expect = 1e-33
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPK-QQCVATGWGRVKPKGDLVSKLRQIRVP 343
AL++L P V +CL + +GWGR + K D +L+ R+P
Sbjct: 176 ALVRLKDPVKMGPT-VSPICLPGTSSDYNLMDGDLGLISGWGRTE-KRDRAVRLKAARLP 233
Query: 344 LHNISVCRDKYGDSVELHGGH-------LCGGQLDGFSGACIGDSGGPLQC--SLKDGRW 394
+ + C++ + +C G G +C GDSGG ++
Sbjct: 234 VAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMD-SCKGDSGGAFAVQDPNDKTKF 292
Query: 395 YLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
Y AG+ S+G C +YT++ Y+ WI K +
Sbjct: 293 YAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQ 325
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 191 bits (487), Expect = 8e-59
Identities = 61/225 (27%), Positives = 93/225 (41%), Gaps = 27/225 (12%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G G PWQ L +CG ++ +++TAAHC++ +
Sbjct: 2 VGGYNCKDGEVPWQALLINEENE-----GFCGGTILSEFYILTAAHCLYQ-------AKR 49
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
+ +GD + +EE E VE + H F Y DIA+L+L P + R V
Sbjct: 50 FKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN-VAPAS 108
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGG 204
L A P +C+ +GWG G L+ + P+ + + C Y +
Sbjct: 109 LPTA---PPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKI--TSN 163
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
C G L+G +C GDSGGP+ C L G+ S+G G C
Sbjct: 164 MFCVGFLEGGKDSCQGDSGGPVVC-----NGQLQGVVSWGDG-CA 202
Score = 129 bits (326), Expect = 3e-35
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 12/147 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
A+L+L P + R V L A P +C+ +GWG G L+ + P
Sbjct: 90 AVLRLKTPITFRMN-VAPASLPTA---PPATGTKCLISGWGNTASSGADYPDELQCLDAP 145
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
+ + + C Y + C G L+G +C GDSGGP+ C L G+ S+G
Sbjct: 146 VLSQAKCEASYPGKI--TSNMFCVGFLEGGKDSCQGDSGGPVVC-----NGQLQGVVSWG 198
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQIN 430
GCA+ P VYTK+ Y+ WI+ I
Sbjct: 199 DGCAQKNKPGVYTKVYNYVKWIKNTIA 225
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 191 bits (487), Expect = 9e-59
Identities = 61/227 (26%), Positives = 89/227 (39%), Gaps = 26/227 (11%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G E + P+ V L + C LI WV+TAAHC N
Sbjct: 2 IGGNEVTPHSRPYMVLLSLD------RKTICAGALIAKDWVLTAAHCNLNKR-------- 47
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
+LG T EE ++ + V++ + + D+ LL+L+ +K V +
Sbjct: 48 SQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAK-INKYVTILH 106
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSV--ELHG 203
L V P C GWGR LR++ + + + VC D+ + +
Sbjct: 107 LPKKGD-DVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGM 165
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CG 249
+C G L G +C GDSG PL C G+TSFG CG
Sbjct: 166 NMVCAGSLRGGRDSCNGDSGSPLLC-----EGVFRGVTSFGLENKCG 207
Score = 129 bits (328), Expect = 2e-35
Identities = 47/154 (30%), Positives = 63/154 (40%), Gaps = 12/154 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
LL+L+ +K V + L V P C GWGR LR++ + +
Sbjct: 88 KLLQLTEKAK-INKYVTILHLPKKGD-DVKPGTMCQVAGWGRTHNSASWSDTLREVEITI 145
Query: 345 HNISVCRDKYGDSV--ELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
+ VC D+ + + +C G L G +C GDSG PL C G+TSF
Sbjct: 146 IDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLC-----EGVFRGVTSF 200
Query: 403 GS--GCAKSGYPDVYTKLSF-YLPWIRKQINIAV 433
G C P VY LS +L WI I AV
Sbjct: 201 GLENKCGDPRGPGVYILLSKKHLNWIIMTIKGAV 234
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 190 bits (486), Expect = 2e-58
Identities = 59/227 (25%), Positives = 83/227 (36%), Gaps = 27/227 (11%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G E + V+L R +CG LI+ WV+TAAHC +
Sbjct: 2 IGGDECNINEHRFLVALYTSRSRT----LFCGGTLINQEWVLTAAHC---------DRKN 48
Query: 88 WTAVLGDWDRTEEEKSE-VRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
+ LG + + E R+P E+ + DI L++L P +
Sbjct: 49 FRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKH-IAPF 107
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKY-GDSVELH 202
L + P + C GWGR+ P + + L +CR Y +
Sbjct: 108 SLPSS---PPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPAT 164
Query: 203 GGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
LC G L+G C GDSGGPL C GI S+G C
Sbjct: 165 SRTLCAGILEGGKDTCKGDSGGPLIC-----NGQFQGIASWGDDPCA 206
Score = 125 bits (317), Expect = 7e-34
Identities = 43/148 (29%), Positives = 58/148 (39%), Gaps = 12/148 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
L++L P + L + P + C GWGR+ P + +
Sbjct: 90 MLIRLDSPVKNSKH-IAPFSLPSS---PPSVGSVCRIMGWGRISPTEGTYPDVPHCVNIN 145
Query: 344 LHNISVCRDKY-GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
L +CR Y + LC G L+G C GDSGGPL C GI S+
Sbjct: 146 LLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLIC-----NGQFQGIASW 200
Query: 403 GSG-CAKSGYPDVYTKLSFYLPWIRKQI 429
G CA+ P YTK+ +L WI I
Sbjct: 201 GDDPCAQPHKPAAYTKVFDHLDWIENII 228
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 188 bits (481), Expect = 6e-58
Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ GK++ G +P+QVSL++ H CGA ++ + V+TAAHC+ L
Sbjct: 2 VGGKDAPVGKYPYQVSLRLSGS------HRCGASILDNNNVLTAAHCVD----GLSNLNR 51
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
+G +E S VE V++ + +D+AL+ L+ P D V+ +
Sbjct: 52 LKVHVGTNYLSE---SGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDL-VQPIK 107
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L+ D+ + C TGWG + G+ + L++I + +H C + H
Sbjct: 108 LSTNDEDLES--NPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW---RVIDSH 162
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
+C G GAC GDSGGPL GI SFGS C +G
Sbjct: 163 ICTLTKRG-EGACHGDSGGPLVA-----NGAQIGIVSFGSP-CALG 201
Score = 136 bits (344), Expect = 7e-38
Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
AL+ L+ P D V+ + L+ D+ + C TGWG + G+ + L++I + +
Sbjct: 89 ALVHLTNPIKFNDL-VQPIKLSTNDEDLES--NPCTLTGWGSTRLGGNTPNALQEIELIV 145
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
H C + H+C G GAC GDSGGPL GI SFGS
Sbjct: 146 HPQKQCERDQW---RVIDSHICTLTKRG-EGACHGDSGGPLVA-----NGAQIGIVSFGS 196
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
CA G PDVYT++S ++ WI +
Sbjct: 197 PCAL-GEPDVYTRVSSFVSWINANL 220
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 188 bits (480), Expect = 1e-57
Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 28/229 (12%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
ING E+ G +P+Q L + WCG LI W++TAAHC+H+
Sbjct: 2 INGYEAYTGLFPYQAGLDITLQDQRR--VWCGGSLIDNKWILTAAHCVHD-------AVS 52
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPT-SARDKGVRAV 144
LG + E E + ERI H F Y +D+AL+K+ + ++ +
Sbjct: 53 VVVYLGSAVQYE---GEAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDN---IQPI 106
Query: 145 CL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHG 203
L + + +GWG+ + L+ + + C +Y + +
Sbjct: 107 RLPSGEELNNKFENIWATVSGWGQSNTDTVI---LQYTYNLVIDNDRCAQEYPPGI-IVE 162
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGY-CGVG 251
+CG C GDSGGP + L G+ SF SG C G
Sbjct: 163 STICGD-TSDGKSPCFGDSGGPFVL---SDKNLLIGVVSFVSGAGCESG 207
Score = 125 bits (317), Expect = 7e-34
Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 16/152 (10%)
Query: 285 ALLKLSRPT-SARDKGVRAVCL-TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
AL+K+ + ++ + L + + +GWG+ + L+
Sbjct: 90 ALIKIPHVEYTDN---IQPIRLPSGEELNNKFENIWATVSGWGQSNTDTVI---LQYTYN 143
Query: 343 PLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSF 402
+ + C +Y + + +CG C GDSGGP + L G+ SF
Sbjct: 144 LVIDNDRCAQEYPPGI-IVESTICGD-TSDGKSPCFGDSGGPFVL---SDKNLLIGVVSF 198
Query: 403 GS--GCAKSGYPDVYTKLSFYLPWIRKQINIA 432
S GC G P +++++ Y+ WI++ I
Sbjct: 199 VSGAGCES-GKPVGFSRVTSYMDWIQQNTGIK 229
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 187 bits (478), Expect = 2e-57
Identities = 60/223 (26%), Positives = 92/223 (41%), Gaps = 23/223 (10%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G + G +P+ VS+ R G WCG L++ + V+TAAHC+
Sbjct: 2 VGGTSASAGDFPFIVSIS----RNGG--PWCGGSLLNANTVLTAAHCVSG-----YAQSG 50
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLT 147
+ G RT + + +RVH + ++D+A+LKLS + L
Sbjct: 51 FQIRAGSLSRTS---GGITSSLSSVRVHPSYSGNNNDLAILKLSTSIP-SGGNIGYARLA 106
Query: 148 DADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGGHL 206
+ PV GWG G L ++ VP+ + + CR +YG S +
Sbjct: 107 ASGSDPV-AGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS-AITNQMF 164
Query: 207 CGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
C G G +C GDSGGP+ L G S+G+G C
Sbjct: 165 CAGVSSGGKDSCQGDSGGPIVD----SSNTLIGAVSWGNG-CA 202
Score = 129 bits (326), Expect = 3e-35
Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 8/144 (5%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
A+LKLS + L + PV GWG G L ++ VP
Sbjct: 86 AILKLSTSIP-SGGNIGYARLAASGSDPV-AGSSATVAGWGATSEGGSSTPVNLLKVTVP 143
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
+ + + CR +YG S + C G G +C GDSGGP+ L G S+G
Sbjct: 144 IVSRATCRAQYGTS-AITNQMFCAGVSSGGKDSCQGDSGGPIVD----SSNTLIGAVSWG 198
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRK 427
+GCA+ Y VY + +I
Sbjct: 199 NGCARPNYSGVYASVGALRSFIDT 222
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 187 bits (477), Expect = 3e-57
Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 40/238 (16%)
Query: 26 RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
+ + + PW V++ + + CG VL+ +WV+TAAHC ++
Sbjct: 3 PPVQSQVDCENSQPWHVAVYRFNK------YQCGGVLLDRNWVLTAAHCYNDK------- 49
Query: 86 ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------------HNYHHDIALLKLSR 132
+ LG + E+E S+ V + H +F +Y +D+ LL+LS+
Sbjct: 50 --YQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSK 107
Query: 133 PTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVC 191
P V+ + L C+A+GWG P L+ + + L C
Sbjct: 108 PAD-ITDVVKPITLPT---EEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDC 163
Query: 192 RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+ V LC G++DG S C DSGGPL C L GITS+G CG
Sbjct: 164 DKAHEMKV--TDAMLCAGEMDGGSYTCEHDSGGPLIC-----DGILQGITSWGPEPCG 214
Score = 127 bits (322), Expect = 2e-34
Identities = 47/147 (31%), Positives = 64/147 (43%), Gaps = 13/147 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
LL+LS+P V+ + L C+A+GWG P L+ + +
Sbjct: 101 MLLRLSKPAD-ITDVVKPITLPT---EEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLK 156
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
L C + V LC G++DG S C DSGGPL C L GITS+G
Sbjct: 157 LLPNEDCDKAHEMKV--TDAMLCAGEMDGGSYTCEHDSGGPLIC-----DGILQGITSWG 209
Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQI 429
C + P VYTKL + WIR+ +
Sbjct: 210 PEPCGEPTEPSVYTKLIKFSSWIRETM 236
Score = 29.5 bits (67), Expect = 1.8
Identities = 2/16 (12%), Positives = 5/16 (31%)
Query: 260 RLINGKESIRGAWPWQ 275
+ + + PW
Sbjct: 3 PPVQSQVDCENSQPWH 18
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 186 bits (474), Expect = 7e-57
Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 30/225 (13%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
ING++ + PWQ +L + + +C VL+HP WV++AAHC N
Sbjct: 2 INGEDCSPHSQPWQAALVMENE------LFCSGVLVHPQWVLSAAHCFQNS--------- 46
Query: 88 WTAVLGDWD-RTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
+T LG ++E + H E+ +D+ L+KL S +R++
Sbjct: 47 YTIGLGLHSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVS-ESDTIRSI 105
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
+ + C+ +GWG + G + + L+ + V + + VC Y H
Sbjct: 106 SIA---SQCPTAGNSCLVSGWGLLAN-GRMPTVLQCVNVSVVSEEVCSKLYDPLY--HPS 159
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
C G +C GDSGGPL C YL G+ SFG CG
Sbjct: 160 MFCAGGGQDQKDSCNGDSGGPLIC-----NGYLQGLVSFGKAPCG 199
Score = 126 bits (320), Expect = 2e-34
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 13/147 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
L+KL S +R++ + + C+ +GWG + G + + L+ + V +
Sbjct: 88 MLIKLDESVS-ESDTIRSISIA---SQCPTAGNSCLVSGWGLLAN-GRMPTVLQCVNVSV 142
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ VC Y H C G +C GDSGGPL C YL G+ SFG
Sbjct: 143 VSEEVCSKLYDPLY--HPSMFCAGGGQDQKDSCNGDSGGPLIC-----NGYLQGLVSFGK 195
Query: 405 G-CAKSGYPDVYTKLSFYLPWIRKQIN 430
C + G P VYT L + WI K +
Sbjct: 196 APCGQVGVPGVYTNLCKFTEWIEKTVQ 222
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 186 bits (475), Expect = 7e-57
Identities = 70/236 (29%), Positives = 107/236 (45%), Gaps = 42/236 (17%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G + + + PWQV++ + CG VLI PSWV+TAAHC N+
Sbjct: 2 VGGYKCEKNSQPWQVAVINEY--------LCGGVLIDPSWVITAAHCYSNN--------- 44
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------------HNYHHDIALLKLSRPT 134
+ +LG + ++E R V + H ++ H++ +D+ LL LS P
Sbjct: 45 YQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPA 104
Query: 135 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRD 193
GV+ + L + C+A+GWG P +VS L+ + + L + C +
Sbjct: 105 D-ITGGVKVIDLPTKE---PKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIE 160
Query: 194 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
Y D+V LC G+++G C GDSGGPL C L GITS G+ C
Sbjct: 161 TYKDNV--TDVMLCAGEMEGGKDTCAGDSGGPLIC-----DGVLQGITSGGATPCA 209
Score = 127 bits (322), Expect = 1e-34
Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
LL LS P GV+ + L + C+A+GWG P +VS L+ + +
Sbjct: 96 MLLHLSEPAD-ITGGVKVIDLPTKE---PKVGSTCLASGWGSTNPSEMVVSHDLQCVNIH 151
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
L + C + Y D+V LC G+++G C GDSGGPL C L GITS G
Sbjct: 152 LLSNEKCIETYKDNV--TDVMLCAGEMEGGKDTCAGDSGGPLIC-----DGVLQGITSGG 204
Query: 404 SG-CAKSGYPDVYTKLSFYLPWIRKQIN 430
+ CAK P +Y KL + WI+K +
Sbjct: 205 ATPCAKPKTPAIYAKLIKFTSWIKKVMK 232
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 185 bits (472), Expect = 1e-56
Identities = 65/224 (29%), Positives = 97/224 (43%), Gaps = 30/224 (13%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G E + P QVSL H+CG L++ +WVV+AAHC
Sbjct: 2 VGGYECKAYSQPHQVSLN-------SGYHFCGGSLVNENWVVSAAHC---------YKSR 45
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
LG+ + E SE I R+ H + +N +DI L+KLS+P + V+ V
Sbjct: 46 VEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTY-VQPVA 104
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L + C +GWG +KL+ + +P+ + S C + Y +
Sbjct: 105 LPTSC---APAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMI--TNAM 159
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
C G L+G +C GDSGGP+ C L G+ S+G G C
Sbjct: 160 FCAGYLEGGKDSCQGDSGGPVVC-----NGELQGVVSWGYG-CA 197
Score = 131 bits (331), Expect = 5e-36
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 11/145 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
L+KLS+P + V+ V L + C +GWG +KL+ + +P+
Sbjct: 86 MLIKLSKPATLNTY-VQPVALPTSC---APAGTMCTVSGWGNTMSSTADSNKLQCLNIPI 141
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ S C + Y + C G L+G +C GDSGGP+ C L G+ S+G
Sbjct: 142 LSYSDCNNSYPGMI--TNAMFCAGYLEGGKDSCQGDSGGPVVC-----NGELQGVVSWGY 194
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
GCA+ G P VY K+ + W+ +
Sbjct: 195 GCAEPGNPGVYAKVCIFNDWLTSTM 219
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 185 bits (471), Expect = 2e-56
Identities = 66/225 (29%), Positives = 91/225 (40%), Gaps = 31/225 (13%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I+G RG+ PWQV+L + CG VL++ WV+TAAHC N+
Sbjct: 2 IDGAPCARGSHPWQVALLSGNQ------LHCGGVLVNERWVLTAAHCKMNE--------- 46
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVC 145
+T LG + RI + H + + +D+ L+KL+ V+ V
Sbjct: 47 YTVHLGSDTLGDRR--AQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSM-VKKVR 103
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGG 204
L P C +GWG L + V L + C Y D +
Sbjct: 104 LPSR---CEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLL--ENS 158
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
LC G D AC GDSGGPL C R L G+ S+G+ CG
Sbjct: 159 MLCAGIPDSKKNACNGDSGGPLVC-----RGTLQGLVSWGTFPCG 198
Score = 128 bits (323), Expect = 8e-35
Identities = 43/147 (29%), Positives = 58/147 (39%), Gaps = 13/147 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
L+KL+ V+ V L P C +GWG L + V
Sbjct: 85 MLVKLNSQARLSSM-VKKVRLPSR---CEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVK 140
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
L + C Y D + LC G D AC GDSGGPL C R L G+ S+G
Sbjct: 141 LISPQDCTKVYKDLL--ENSMLCAGIPDSKKNACNGDSGGPLVC-----RGTLQGLVSWG 193
Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQI 429
+ C + P VYT++ + WI +
Sbjct: 194 TFPCGQPNDPGVYTQVCKFTKWINDTM 220
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 184 bits (469), Expect = 4e-56
Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 29/224 (12%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
++G + + P+Q +L CG VLIHP WV+TAAHC +
Sbjct: 2 VHGGPCDKTSHPYQAALYTSGH------LLCGGVLIHPLWVLTAAHCKKPN--------- 46
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
LG + + E S+ + V R +H ++ ++ DI LL+L+RP + ++ +
Sbjct: 47 LQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSEL-IQPLP 105
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGH 205
L C GWG+ GD ++ + L + C Y +
Sbjct: 106 LER---DCSANTTSCHILGWGKTAD-GDFPDTIQCAYIHLVSREECEHAYPGQI--TQNM 159
Query: 206 LCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
LC G +C GDSGGPL C +L G+ S+G+ CG
Sbjct: 160 LCAGDEKYGKDSCQGDSGGPLVC-----GDHLRGLVSWGNIPCG 198
Score = 122 bits (309), Expect = 8e-33
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
LL+L+RP + ++ + L C GWG+ GD ++ + L
Sbjct: 87 MLLRLARPAKLSEL-IQPLPLER---DCSANTTSCHILGWGKTAD-GDFPDTIQCAYIHL 141
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
+ C Y + LC G +C GDSGGPL C +L G+ S+G+
Sbjct: 142 VSREECEHAYPGQI--TQNMLCAGDEKYGKDSCQGDSGGPLVC-----GDHLRGLVSWGN 194
Query: 405 -GCAKSGYPDVYTKLSFYLPWIRKQI 429
C P VYT + Y WI+K I
Sbjct: 195 IPCGSKEKPGVYTNVCRYTNWIQKTI 220
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 184 bits (470), Expect = 4e-56
Identities = 64/236 (27%), Positives = 100/236 (42%), Gaps = 39/236 (16%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G E + + PWQ +L CG +L+H WV+TAAHCI ++
Sbjct: 2 VGGWECEQHSQPWQAALYHF------STFQCGGILVHRQWVLTAAHCISDN--------- 46
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------------HNYHHDIALLKLSRPT 134
+ LG + ++E + + V H F +Y HD+ LL+L+ P
Sbjct: 47 YQLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPA 106
Query: 135 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISVCRD 193
V+ V L + C+A+GWG ++P+ L+ + + + C+
Sbjct: 107 DTITDAVKVVELPTEE---PEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKK 163
Query: 194 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+ V LC G L+G C+GDSGGPL C L G+TS+G CG
Sbjct: 164 AHVQKV--TDFMLCVGHLEGGKDTCVGDSGGPLMC-----DGVLQGVTSWGYVPCG 212
Score = 130 bits (328), Expect = 2e-35
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVP 343
LL+L+ P V+ V L + C+A+GWG ++P+ L+ + +
Sbjct: 98 MLLRLTEPADTITDAVKVVELPTEE---PEVGSTCLASGWGSIEPENFSFPDDLQCVDLK 154
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
+ C+ + V LC G L+G C+GDSGGPL C L G+TS+G
Sbjct: 155 ILPNDECKKAHVQKV--TDFMLCVGHLEGGKDTCVGDSGGPLMC-----DGVLQGVTSWG 207
Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQI 429
C P V ++ Y+ WI I
Sbjct: 208 YVPCGTPNKPSVAVRVLSYVKWIEDTI 234
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 183 bits (467), Expect = 8e-56
Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 33/228 (14%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G+E I + PWQ +L CG VL+ WV+TAAHC
Sbjct: 2 LEGRECIPHSQPWQAALFQGER------LICGGVLVGDRWVLTAAHCKKQK--------- 46
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN-----YHHDIALLKLSRPTSARDKGVR 142
++ LGD ++ E I V + H ++N + HDI L++L + V+
Sbjct: 47 YSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSAN-LGDKVK 105
Query: 143 AVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVEL 201
V L + Q+C+ +GWG V + L V +++ + C Y +
Sbjct: 106 PVQLAN---LCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKI-- 160
Query: 202 HGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
G +C G + C GDSGGPL C L GITS+GS CG
Sbjct: 161 TEGMVCAG-SSNGADTCQGDSGGPLVC-----DGMLQGITSWGSDPCG 202
Score = 124 bits (314), Expect = 1e-33
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 14/148 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
L++L + V+ V L + Q+C+ +GWG V + L V
Sbjct: 90 MLIRLQNSAN-LGDKVKPVQLAN---LCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVK 145
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
+++ + C Y + G +C G + C GDSGGPL C L GITS+G
Sbjct: 146 IYSQNKCERAYPGKI--TEGMVCAG-SSNGADTCQGDSGGPLVC-----DGMLQGITSWG 197
Query: 404 SG-CAKSGYPDVYTKLSFYLPWIRKQIN 430
S C K P VYTK+ Y WI+K ++
Sbjct: 198 SDPCGKPEKPGVYTKICRYTTWIKKTMD 225
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 183 bits (466), Expect = 1e-55
Identities = 54/225 (24%), Positives = 77/225 (34%), Gaps = 27/225 (12%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G E P+ V+L C LI+ WV+TAAHC +
Sbjct: 2 VGGDECNINEHPFLVALY----TSASSTIHCAGALINREWVLTAAHCDRRN--------- 48
Query: 88 WTAVLGDWDRTEEEKSE-VRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
LG + + E +R+P + + DI L++L RP + + V
Sbjct: 49 IRIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTH-IAPV 107
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGG 204
L +C GWG++ + + C Y
Sbjct: 108 SLPSR---SRGVGSRCRIMGWGKIST-TTYPDVPHCTNIFIVKHKWCEPLYPWV-PADSR 162
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
LC G L G C GDSGGPL C + GI + GS CG
Sbjct: 163 TLCAGILKGGRDTCHGDSGGPLIC-----NGEMHGIVAGGSEPCG 202
Score = 123 bits (312), Expect = 3e-33
Identities = 40/147 (27%), Positives = 54/147 (36%), Gaps = 12/147 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
L++L RP + + V L +C GWG++ + +
Sbjct: 90 MLIRLRRPVTYSTH-IAPVSLPSR---SRGVGSRCRIMGWGKIST-TTYPDVPHCTNIFI 144
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
C Y LC G L G C GDSGGPL C + GI + GS
Sbjct: 145 VKHKWCEPLYPWV-PADSRTLCAGILKGGRDTCHGDSGGPLIC-----NGEMHGIVAGGS 198
Query: 405 -GCAKSGYPDVYTKLSFYLPWIRKQIN 430
C + P VYTK+ Y WI+ I
Sbjct: 199 EPCGQHLKPAVYTKVFDYNNWIQSIIA 225
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 182 bits (465), Expect = 1e-55
Identities = 65/225 (28%), Positives = 98/225 (43%), Gaps = 31/225 (13%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G P+QVSL H+CG LI+ WVV+AAHC +
Sbjct: 2 VGGYTCGANTVPYQVSLN-------SGYHFCGGSLINSQWVVSAAHCYKSG--------- 45
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
LG+ + E +E I + VH + + ++DI L+KL S + V ++
Sbjct: 46 IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSR-VASIS 104
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHGG 204
L + + QC+ +GWG K G L+ ++ P+ + S C+ Y +
Sbjct: 105 LPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQI--TSN 159
Query: 205 HLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
C G L+G +C GDSGGP+ C L GI S+GSG C
Sbjct: 160 MFCAGYLEGGKDSCQGDSGGPVVC-----SGKLQGIVSWGSG-CA 198
Score = 128 bits (323), Expect = 8e-35
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
L+KL S + V ++ L + + QC+ +GWG K G L+ ++ P
Sbjct: 86 MLIKLKSAASLNSR-VASISLPTS---CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAP 141
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
+ + S C+ Y + C G L+G +C GDSGGP+ C L GI S+G
Sbjct: 142 ILSDSSCKSAYPGQI--TSNMFCAGYLEGGKDSCQGDSGGPVVC-----SGKLQGIVSWG 194
Query: 404 SGCAKSGYPDVYTKLSFYLPWIRKQIN 430
SGCA+ P VYTK+ Y+ WI++ I
Sbjct: 195 SGCAQKNKPGVYTKVCNYVSWIKQTIA 221
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 183 bits (466), Expect = 1e-55
Identities = 65/236 (27%), Positives = 95/236 (40%), Gaps = 40/236 (16%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G + + PWQV++ H CG VL+ +WV+TAAHC +
Sbjct: 2 VGGFNCEKNSQPWQVAVYYQKE------HICGGVLLDRNWVLTAAHCYVDQ--------- 46
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------------HNYHHDIALLKLSRPT 134
+ LG +EE S V + H F ++ D+ LL+LS+P
Sbjct: 47 YEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPA 106
Query: 135 SARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRD 193
D V+ + L + P +C+A+GWG + P L+ + + L C
Sbjct: 107 DITDV-VKPIALPTKE---PKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAK 162
Query: 194 KYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
Y V LC G++ G C DSGGPL C L G TS+G CG
Sbjct: 163 VYLQKV--TDVMLCAGEMGGGKDTCRDDSGGPLIC-----DGILQGTTSYGPVPCG 211
Score = 126 bits (320), Expect = 3e-34
Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 13/147 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
LL+LS+P D V+ + L + P +C+A+GWG + P L+ + +
Sbjct: 98 MLLRLSKPADITDV-VKPIALPTKE---PKPGSKCLASGWGSITPTRWQKPDDLQCVFIT 153
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
L C Y V LC G++ G C DSGGPL C L G TS+G
Sbjct: 154 LLPNENCAKVYLQKV--TDVMLCAGEMGGGKDTCRDDSGGPLIC-----DGILQGTTSYG 206
Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQI 429
C K G P +YT L + WI+ +
Sbjct: 207 PVPCGKPGVPAIYTNLIKFNSWIKDTM 233
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 182 bits (464), Expect = 3e-55
Identities = 62/239 (25%), Positives = 97/239 (40%), Gaps = 46/239 (19%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G E + + PWQV++ CG VL+HP WV+TAAHC+ +D
Sbjct: 2 IGGWECEKHSKPWQVAVYHQGH------FQCGGVLVHPQWVLTAAHCMSDD--------- 46
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------------HNYHHDIALLKLSRP- 133
+ LG + +++E + V + +F + HD+ LL+L++P
Sbjct: 47 YQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPA 106
Query: 134 --TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQIRVPLHNISV 190
T A V+ + L + C +GWG + + S L+ + + L +
Sbjct: 107 RITDA----VKILDLPT---QEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEK 159
Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
C Y + + LC D C+GDSGG L C GITS+G C
Sbjct: 160 CARAYPEKM--TEFVLCATHRDDSGSICLGDSGGALIC-----DGVFQGITSWGYSECA 211
Score = 126 bits (318), Expect = 6e-34
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 19/150 (12%)
Query: 285 ALLKLSRP---TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-KLRQI 340
LL+L++P T A V+ + L + C +GWG + + S L+ +
Sbjct: 98 MLLRLAQPARITDA----VKILDLPT---QEPKLGSTCYTSGWGLISTFTNRGSGTLQCV 150
Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
+ L + C Y + + LC D C+GDSGG L C GIT
Sbjct: 151 ELRLQSNEKCARAYPEKM--TEFVLCATHRDDSGSICLGDSGGALIC-----DGVFQGIT 203
Query: 401 SFGSG-CAKSGYPDVYTKLSFYLPWIRKQI 429
S+G CA V+TK+ + WI++ I
Sbjct: 204 SWGYSECADFNDNFVFTKVMPHKKWIKETI 233
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 182 bits (464), Expect = 3e-55
Identities = 70/239 (29%), Positives = 97/239 (40%), Gaps = 46/239 (19%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+ G E + + PWQV + CG VL+HP WV+TAAHCI N
Sbjct: 2 VGGWECEKHSQPWQVLVASRGR------AVCGGVLVHPQWVLTAAHCIRNK--------- 46
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF-------------HNYHHDIALLKLSRP- 133
+LG E + V H + + HD+ LL+LS P
Sbjct: 47 SVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPA 106
Query: 134 --TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISV 190
T A V+ + L + C A+GWG ++P+ L K L+ + + + + V
Sbjct: 107 ELTDA----VKVMDLPT---QEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDV 159
Query: 191 CRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
C + V LC G+ G C GDSGGPL C L GITS+GS C
Sbjct: 160 CAQVHPQKV--TKFMLCAGRWTGGKSTCSGDSGGPLVC-----NGVLQGITSWGSEPCA 211
Score = 126 bits (319), Expect = 4e-34
Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 19/150 (12%)
Query: 285 ALLKLSRP---TSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQI 340
LL+LS P T A V+ + L + C A+GWG ++P+ L K L+ +
Sbjct: 98 MLLRLSEPAELTDA----VKVMDLPT---QEPALGTTCYASGWGSIEPEEFLTPKKLQCV 150
Query: 341 RVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
+ + + VC + V LC G+ G C GDSGGPL C L GIT
Sbjct: 151 DLHVISNDVCAQVHPQKV--TKFMLCAGRWTGGKSTCSGDSGGPLVC-----NGVLQGIT 203
Query: 401 SFGS-GCAKSGYPDVYTKLSFYLPWIRKQI 429
S+GS CA P +YTK+ Y WI+ I
Sbjct: 204 SWGSEPCALPERPSLYTKVVHYRKWIKDTI 233
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 181 bits (462), Expect = 5e-55
Identities = 47/230 (20%), Positives = 80/230 (34%), Gaps = 28/230 (12%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I GK+S PW V + V +CG ++ ++V+TAA C+ P
Sbjct: 2 IGGKKSDITKEPWAVGVLVDEK------PFCGGSILTANFVITAAQCVDG-----TKPSD 50
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAVC 145
+ G RT + + ++I +H ++ A+++ P DK + +
Sbjct: 51 ISIHYGSSYRTTK---GTSVMAKKI-YIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIE 106
Query: 146 LTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHG- 203
L P P + +GWG K S L + + + C ++Y
Sbjct: 107 LPSLLYDPE-PDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYI 165
Query: 204 --GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
G C G + GD+G P L G+ S+ S
Sbjct: 166 YDGVFCAGGEYDETYIGYGDAGDPAVQ-----NGTLVGVASYISS-MPSE 209
Score = 135 bits (342), Expect = 2e-37
Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 11/150 (7%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
A+++ P DK + + L P P + +GWG K S L +
Sbjct: 87 AVIETEMPIKLDDKTTKKIELPSLLYDPE-PDTSVLVSGWGSTNFKSLEYSGDLMEANFT 145
Query: 344 LHNISVCRDKYGDSVELHG---GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGIT 400
+ + C ++Y G C G + GD+G P L G+
Sbjct: 146 VVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQ-----NGTLVGVA 200
Query: 401 SFGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
S+ S +P V+ ++ +Y+ I+ I+
Sbjct: 201 SYISSMPS-EFPSVFLRVGYYVLDIKDIIS 229
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 180 bits (459), Expect = 2e-54
Identities = 56/226 (24%), Positives = 80/226 (35%), Gaps = 29/226 (12%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G E V+ +C LI+ WV+TAAHC
Sbjct: 2 IGGDECNINEHRSLVAFFNSTG------FFCSGTLINEEWVLTAAHC---------DNTN 46
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH---HDIALLKLSRPTSARDKGVRAV 144
+ LG + + E + + N DI L+KL S + + +
Sbjct: 47 FQMKLGVHSKKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEH-IVPL 105
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHG 203
L + P + C GWG + P + L + +VC+ Y + +
Sbjct: 106 SLPSS---PPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELL-TEY 161
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
LC G L+G C GDSGGPL C GI SFG+ CG
Sbjct: 162 RTLCAGILEGGKDTCGGDSGGPLIC-----NGQFQGIVSFGAHPCG 202
Score = 124 bits (314), Expect = 2e-33
Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 12/148 (8%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
L+KL S + + + L + P + C GWG + P +
Sbjct: 88 MLIKLDSRVSNSEH-IVPLSLPSS---PPSVGSVCHIMGWGSITPIKVTYPDVPYCAYIN 143
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
L + +VC+ Y + + LC G L+G C GDSGGPL C GI SFG
Sbjct: 144 LLDDAVCQAGYPELL-TEYRTLCAGILEGGKDTCGGDSGGPLIC-----NGQFQGIVSFG 197
Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
+ C + P VYTK+ Y WI+ I
Sbjct: 198 AHPCGQGLKPGVYTKVFDYNHWIQSIIA 225
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 179 bits (456), Expect = 4e-54
Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 30/226 (13%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
ING + PWQ +L + + +CGAVL+HP W++TAAHC ++
Sbjct: 2 INGSDCDMHTQPWQAALLLRPNQ-----LYCGAVLVHPQWLLTAAHC---------RKKV 47
Query: 88 WTAVLGDWDRTE-EEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARDKGVRAV 144
+ LG + + E + + H + + +D+ L+KL+R VR +
Sbjct: 48 FRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKD-VRPI 106
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHG 203
++ + +C+ +GWG K K L+ + + + + C D Y +
Sbjct: 107 NVSS---HCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQI--DD 161
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
C G G +C GDSGGP+ C L G+ S+G C
Sbjct: 162 TMFCAGDKAG-RDSCQGDSGGPVVC-----NGSLQGLVSWGDYPCA 201
Score = 119 bits (301), Expect = 1e-31
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
L+KL+R VR + ++ + +C+ +GWG K K L+ + +
Sbjct: 89 MLIKLNRRIRPTKD-VRPINVSS---HCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNIS 144
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
+ + C D Y + C G G +C GDSGGP+ C L G+ S+G
Sbjct: 145 VLSQKRCEDAYPRQI--DDTMFCAGDKAG-RDSCQGDSGGPVVC-----NGSLQGLVSWG 196
Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQI 429
CA+ P VYT L + WI++ I
Sbjct: 197 DYPCARPNRPGVYTNLCKFTKWIQETI 223
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 178 bits (455), Expect = 6e-54
Identities = 54/226 (23%), Positives = 77/226 (34%), Gaps = 32/226 (14%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G E + + CG LI+ WV+TA HC +
Sbjct: 2 IGGDECNINEHRFLALVYANG-------SLCGGTLINQEWVLTARHCDRGN--------- 45
Query: 88 WTAVLGDWDRTEEEKSEV-RIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAV 144
LG + K + R P E+ + DI L++L+RP + +
Sbjct: 46 MRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAH-IAPL 104
Query: 145 CLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVPLHNISVCRDKYGDSVELHG 203
L P + C GWG + + + + + +VC+ Y L
Sbjct: 105 SLPS---NPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG---LAA 158
Query: 204 GHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
LC G L+G C GDSGGPL C GI S G C
Sbjct: 159 TTLCAGILEGGKDTCKGDSGGPLIC-----NGQFQGILSVGGNPCA 199
Score = 121 bits (306), Expect = 3e-32
Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSK-LRQIRVP 343
L++L+RP + + L P + C GWG + + +
Sbjct: 87 MLIRLNRPVRNSAH-IAPLSLPS---NPPSVGSVCRIMGWGTITSPNATLPDVPHCANIN 142
Query: 344 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 403
+ + +VC+ Y L LC G L+G C GDSGGPL C GI S G
Sbjct: 143 ILDYAVCQAAYKG---LAATTLCAGILEGGKDTCKGDSGGPLIC-----NGQFQGILSVG 194
Query: 404 S-GCAKSGYPDVYTKLSFYLPWIRKQIN 430
CA+ P +YTK+ Y WI+ I+
Sbjct: 195 GNPCAQPRKPGIYTKVFDYTDWIQSIIS 222
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 177 bits (452), Expect = 1e-52
Identities = 46/234 (19%), Positives = 78/234 (33%), Gaps = 32/234 (13%)
Query: 21 SHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIF 80
+ PWQV L + +CG V+I ++V+T A C
Sbjct: 88 CACGVLTSEKRAPDLQDLPWQVKLTNSEGK-----DFCGGVIIRENFVLTTAKCSLLH-- 140
Query: 81 SLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLKLSRPTSARD 138
V ++RT ++ + I + + VH + +D++LL+L P
Sbjct: 141 ------RNITVKTYFNRTSQD--PLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPG 192
Query: 139 KGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYG 196
VC + D + + P+ + + +GW R DL + L V L C
Sbjct: 193 A-GLPVCTPEKDFAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTLVEGEECGQVLN 249
Query: 197 DSVELHGGHLC-GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
+V C + A G + G W+L G+ G
Sbjct: 250 VTV--TTRTYCERSSVA----AMHWMDGSVVTRE-HRGSWFLTGVLGSQP--VG 294
Score = 125 bits (317), Expect = 4e-33
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 14/149 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDAD--KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
+LL+L P VC + D + + P+ + + +GW R DL + L V
Sbjct: 180 SLLELEWPIQCPGA-GLPVCTPEKDFAEHLLIPRTRGLLSGWARNG--TDLGNSLTTRPV 236
Query: 343 PLHNISVCRDKYGDSVELHGGHLC-GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
L C +V C + A G + G W+L G+
Sbjct: 237 TLVEGEECGQVLNVTV--TTRTYCERSSVA----AMHWMDGSVVTRE-HRGSWFLTGVLG 289
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
+ + TK+S Y W ++ +N
Sbjct: 290 SQ-PVGGQAHMVLVTKVSRYSLWFKQIMN 317
Score = 29.7 bits (67), Expect = 1.6
Identities = 15/86 (17%), Positives = 19/86 (22%), Gaps = 8/86 (9%)
Query: 191 CRDKY-GDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGYCG 249
C Y G + EL + DG C+ CS G
Sbjct: 30 CSPGYEGSNCELAKNECHPERTDGCQHFCL-PGQESYTCS------CAQGYRLGEDHKQC 82
Query: 250 VGIRYSHRQPRLINGKESIRGAWPWQ 275
V + PWQ
Sbjct: 83 VPHDQCACGVLTSEKRAPDLQDLPWQ 108
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 185 bits (470), Expect = 9e-52
Identities = 75/245 (30%), Positives = 106/245 (43%), Gaps = 18/245 (7%)
Query: 5 CDTVTFARDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIH 64
+ R++ G + +WPWQVSL+ H+CG LI
Sbjct: 540 QCAAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRF-----GMHFCGGTLIS 594
Query: 65 PSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYHHD 124
P WV+TAAHC+ P P + +LG E I V R+ + D
Sbjct: 595 PEWVLTAAHCLEKS----PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEP----TRKD 646
Query: 125 IALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVP 184
IALLKLS P DK V CL + V + +C TGWG + L++ ++P
Sbjct: 647 IALLKLSSPAVITDK-VIPACLPSPNY-VVADRTECFITGWGETQG-TFGAGLLKEAQLP 703
Query: 185 LHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFG 244
+ VC + + LC G L G + +C GDSGGPL C + ++ L G+TS+G
Sbjct: 704 VIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCF-EKDKYILQGVTSWG 762
Query: 245 SGYCG 249
G C
Sbjct: 763 LG-CA 766
Score = 131 bits (331), Expect = 3e-33
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
ALLKLS P DK V CL + V + +C TGWG + L++ ++P+
Sbjct: 648 ALLKLSSPAVITDK-VIPACLPSPNY-VVADRTECFITGWGETQG-TFGAGLLKEAQLPV 704
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
VC + + LC G L G + +C GDSGGPL C + ++ L G+TS+G
Sbjct: 705 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCF-EKDKYILQGVTSWGL 763
Query: 405 GCAKSGYPDVYTKLSFYLPWIRKQI 429
GCA+ P VY ++S ++ WI +
Sbjct: 764 GCARPNKPGVYVRVSRFVTWIEGVM 788
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 174 bits (444), Expect = 9e-52
Identities = 45/243 (18%), Positives = 76/243 (31%), Gaps = 33/243 (13%)
Query: 12 RDCGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTA 71
+ C + + + PWQV L + +CG V+I ++V+T
Sbjct: 39 KQCVPHDQCAC-GVLTSEKRAPDLQDLPWQVKLTNSEGK-----DFCGGVIIRENFVLTT 92
Query: 72 AHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH--NYHHDIALLK 129
A C T + + I + + VH + +D++LL+
Sbjct: 93 AKCSLL-------HRNITVKTYFNRT---SQDPLMIKITHVHVHMRYDADAGENDLSLLE 142
Query: 130 LSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHN 187
L P VC D + + P+ + + +GW R DL + L V L
Sbjct: 143 LEWPIQCPGA-GLPVCTPEKDFAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTLVE 199
Query: 188 ISVCRDKYGDSVELHGGHLC-GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSG 246
C +V C + A G + G W+L G+
Sbjct: 200 GEECGQVLNVTV--TTRTYCERSSVA----AMHWMDGSVVTRE-HRGSWFLTGVLGSQP- 251
Query: 247 YCG 249
G
Sbjct: 252 -VG 253
Score = 123 bits (311), Expect = 1e-32
Identities = 31/149 (20%), Positives = 51/149 (34%), Gaps = 14/149 (9%)
Query: 285 ALLKLSRPTSARDKGVRAVCL--TDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRV 342
+LL+L P VC D + + P+ + + +GW R DL + L V
Sbjct: 139 SLLELEWPIQCPGA-GLPVCTPEKDFAEHLLIPRTRGLLSGWARNG--TDLGNSLTTRPV 195
Query: 343 PLHNISVCRDKYGDSVELHGGHLC-GGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
L C +V C + A G + G W+L G+
Sbjct: 196 TLVEGEECGQVLNVTV--TTRTYCERSSVA----AMHWMDGSVVTRE-HRGSWFLTGVLG 248
Query: 402 FGSGCAKSGYPDVYTKLSFYLPWIRKQIN 430
+ + TK+S Y W ++ +N
Sbjct: 249 SQ-PVGGQAHMVLVTKVSRYSLWFKQIMN 276
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 178 bits (454), Expect = 4e-51
Identities = 52/272 (19%), Positives = 84/272 (30%), Gaps = 54/272 (19%)
Query: 26 RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
+ K + PWQ + V+ P G C ++ +V+TAAHC D
Sbjct: 214 VWEHRKGTDYHKQPWQAKISVIRPSKG--HESCMGAVVSEYFVLTAAHCFTVD----DKE 267
Query: 86 ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH-----------NYHHDIALLKLSRPT 134
+G R + +E + H ++ Y +D+AL+KL
Sbjct: 268 HSIKVSVGGEKRD--------LEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKL 319
Query: 135 SARDKGVRAVCLTDADKRPVNPKQQ----CVATGWGRVKPKGDLV-------SKLRQIRV 183
+R +CL + + C + + KL + V
Sbjct: 320 KYGQT-IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEV 378
Query: 184 PLHN---ISVCRDKYGDSVELHGGH----------LCGGQLDGFSG--ACIGDSGGPLQC 228
+ N C + LC G + ++ C GDSGGPL
Sbjct: 379 YIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIV 438
Query: 229 SLKDGRWYLAGITSFGSGY-CGVGIRYSHRQP 259
K R+ G+ S+G C R
Sbjct: 439 H-KRSRFIQVGVISWGVVDVCKNQKRQKQVPA 469
Score = 115 bits (288), Expect = 4e-28
Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 38/182 (20%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQ----CVATGWGRVKPKGDLV------ 334
AL+KL +R +CL + + C + +
Sbjct: 311 ALIKLKNKLKYGQT-IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEE 369
Query: 335 -SKLRQIRVPLHN---ISVCRDKYGDSVELHGGH----------LCGGQLDGFSG--ACI 378
KL + V + N C + LC G + ++ C
Sbjct: 370 EKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCR 429
Query: 379 GDSGGPLQCSLKDGRWYLAGITSFG--SGCAKSG--------YPDVYTKLSFYLPWIRKQ 428
GDSGGPL K R+ G+ S+G C D + L LPW++++
Sbjct: 430 GDSGGPLIVH-KRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEK 488
Query: 429 IN 430
+
Sbjct: 489 LQ 490
Score = 29.9 bits (67), Expect = 1.8
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 7/47 (14%)
Query: 229 SLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAWPWQ 275
++ + G+ + H K + PWQ
Sbjct: 190 DMECLEDVFYQMIDESQSLSLCGMVWEH-------RKGTDYHKQPWQ 229
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 177 bits (451), Expect = 1e-50
Identities = 53/291 (18%), Positives = 91/291 (31%), Gaps = 60/291 (20%)
Query: 14 CGVGIRYSHRQPRLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAH 73
CGVG ++ S + PW V+++ C LI WV+TAAH
Sbjct: 220 CGVGN---------MSANASDQERTPWHVTIKPKSQ------ETCRGALISDQWVLTAAH 264
Query: 74 CIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH-----------NYH 122
C + LW +GD + +E+ + F Y
Sbjct: 265 CFRDG----NDHSLWRVNVGDPKS----QWGKEFLIEKAVISPGFDVFAKKNQGILEFYG 316
Query: 123 HDIALLKLSRPTSARDKGVRAVCLTDADKRPVN----PKQQCVATGWGRVKPKGDLVS-- 176
DIALLKL++ R +CL + + C + +
Sbjct: 317 DDIALLKLAQKVKMSTH-ARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFV 375
Query: 177 KLRQIRVPLHNI-----SVCRDKYGDSVELHGGH-----------LCGGQLDGFSGACIG 220
L ++ ++ + C + + LC G + C G
Sbjct: 376 ALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQED-ESPCKG 434
Query: 221 DSGGPLQCSLKDGRWYLAGITSFG-SGYCGVGIRYSHRQPRLINGKESIRG 270
+SGG + + R++ G+ S+G C + R+ + R
Sbjct: 435 ESGGAVFLE-RRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRD 484
Score = 110 bits (276), Expect = 2e-26
Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 42/184 (22%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVN----PKQQCVATGWGRVKPKGDLVS--KLR 338
ALLKL++ R +CL + + C + + L
Sbjct: 320 ALLKLAQKVKMSTH-ARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALN 378
Query: 339 QIRVPLHNI-----SVCRDKYGDSVELHGGH-----------LCGGQLDGFSGACIGDSG 382
++ ++ + C + + LC G + C G+SG
Sbjct: 379 GSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQED-ESPCKGESG 437
Query: 383 GPLQCSLKDGRWYLAGITSFG-----SGCAKSG------------YPDVYTKLSFYLPWI 425
G + + R++ G+ S+G G A D + L PW+
Sbjct: 438 GAVFLE-RRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWL 496
Query: 426 RKQI 429
R+ +
Sbjct: 497 RQHL 500
Score = 30.3 bits (68), Expect = 1.5
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 9/30 (30%)
Query: 246 GYCGVGIRYSHRQPRLINGKESIRGAWPWQ 275
CGVG ++ S + PW
Sbjct: 218 TICGVGN---------MSANASDQERTPWH 238
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 168 bits (427), Expect = 5e-46
Identities = 53/272 (19%), Positives = 84/272 (30%), Gaps = 54/272 (19%)
Query: 26 RLINGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIP 85
+ K + PWQ + V+ P G C ++ +V+TAAHC D
Sbjct: 456 VWEHRKGTDYHKQPWQAKISVIRPSKG--HESCMGAVVSEYFVLTAAHCFTVD----DKE 509
Query: 86 ELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH-----------NYHHDIALLKLSRPT 134
+G R + +E + H ++ Y +D+AL+KL
Sbjct: 510 HSIKVSVGGEKRD--------LEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKL 561
Query: 135 SARDKGVRAVCLTDADKRPVN----PKQQCVATGWGRVKPKGDLV-------SKLRQIRV 183
+R +CL + P C + + KL + V
Sbjct: 562 KYGQT-IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEV 620
Query: 184 PLHNI---SVCRDKYGDSVELHGGH----------LCGGQLDGFSG--ACIGDSGGPLQC 228
+ N C + LC G + ++ C GDSGGPL
Sbjct: 621 YIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIV 680
Query: 229 SLKDGRWYLAGITSFGSGY-CGVGIRYSHRQP 259
K R+ G+ S+G C R
Sbjct: 681 H-KRSRFIQVGVISWGVVDVCKNQKRQKQVPA 711
Score = 111 bits (278), Expect = 2e-26
Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 38/182 (20%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVN----PKQQCVATGWGRVKPKGDLV------ 334
AL+KL +R +CL + P C + +
Sbjct: 553 ALIKLKNKLKYGQT-IRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEE 611
Query: 335 -SKLRQIRVPLHNI---SVCRDKYGDSVELHGGH----------LCGGQLDGFSG--ACI 378
KL + V + N C + LC G + ++ C
Sbjct: 612 EKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCR 671
Query: 379 GDSGGPLQCSLKDGRWYLAGITSFGS--GCAKSG--------YPDVYTKLSFYLPWIRKQ 428
GDSGGPL K R+ G+ S+G C D + L LPW++++
Sbjct: 672 GDSGGPLIVH-KRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEK 730
Query: 429 IN 430
+
Sbjct: 731 LQ 732
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 139 bits (353), Expect = 2e-40
Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
+NG+E++ G+WPWQVSLQ H+CG LI+ +WVVTAAHC
Sbjct: 2 VNGEEAVPGSWPWQVSLQDKTGF-----HFCGGSLINENWVVTAAHCGVTTS-------- 48
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEF--HNYHHDIALLKLSRPTSARDKGVRAVC 145
V G++D+ + ++ + ++ + ++ ++DI LLKLS S V AVC
Sbjct: 49 DVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQT-VSAVC 107
Query: 146 LTDADKRPVNPKQQCVATGWGRVK 169
L A CV TGWG +
Sbjct: 108 LPSASD-DFAAGTTCVTTGWGLTR 130
Score = 39.5 bits (93), Expect = 4e-04
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK 328
LLKLS S V AVCL A CV TGWG +
Sbjct: 89 TLLKLSTAASFSQT-VSAVCLPSASD-DFAAGTTCVTTGWGLTR 130
Score = 27.5 bits (62), Expect = 4.0
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 262 INGKESIRGAWPWQ 275
+NG+E++ G+WPWQ
Sbjct: 2 VNGEEAVPGSWPWQ 15
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 123 bits (310), Expect = 7e-34
Identities = 52/150 (34%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS---KLRQIR 341
LL+L P D V+ + L + C A+GWG ++P D +++ ++
Sbjct: 11 MLLRLQSPAKITDA-VKVLELPT---QEPELGSTCEASGWGSIEPGPDDFEFPDEIQCVQ 66
Query: 342 VPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITS 401
+ L + C D + D V LC G L G C+GDSGGPL C +G W GITS
Sbjct: 67 LTLLQNTFCADAHPDKV--TESMLCAGYLPGGKDTCMGDSGGPLIC---NGMWQ--GITS 119
Query: 402 FGSG-CAKSGYPDVYTKLSFYLPWIRKQIN 430
+G C + P +YTKL FYL WI I
Sbjct: 120 WGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149
Score = 105 bits (265), Expect = 2e-27
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 119 HNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVS-- 176
+Y HD+ LL+L P D V+ + L + C A+GWG ++P D
Sbjct: 4 KDYSHDLMLLRLQSPAKITDA-VKVLELPT---QEPELGSTCEASGWGSIEPGPDDFEFP 59
Query: 177 -KLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRW 235
+++ +++ L + C D + D V LC G L G C+GDSGGPL C +G W
Sbjct: 60 DEIQCVQLTLLQNTFCADAHPDKV--TESMLCAGYLPGGKDTCMGDSGGPLIC---NGMW 114
Query: 236 YLAGITSFGSGYCG 249
GITS+G CG
Sbjct: 115 Q--GITSWGHTPCG 126
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 105 bits (265), Expect = 5e-28
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 331 GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 390
+ +L+Q +PL + + C+ +G + +C G +C+GDSGGPL C K
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYWGTKI--KDAMICAGA--SGVSSCMGDSGGPLVCK-K 55
Query: 391 DGRWYLAGITSFGSGCAKSGYPDVYTKLSFYLPWIRKQI 429
+G W L GI S+GS + P VY +++ + W+++ +
Sbjct: 56 NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 94
Score = 71.0 bits (175), Expect = 1e-15
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 172 GDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLK 231
+ +L+Q +PL + + C+ +G + +C G +C+GDSGGPL C K
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYWGTKI--KDAMICAGA--SGVSSCMGDSGGPLVCK-K 55
Query: 232 DGRWYLAGITSFGSGYCG 249
+G W L GI S+GS
Sbjct: 56 NGAWTLVGIVSWGSS-TC 72
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 93.7 bits (234), Expect = 6e-24
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 28 INGKESIRGAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPEL 87
I G+E + + PWQV++ CG VL++P WV+TAAHC +++
Sbjct: 2 IGGRECEKNSHPWQVAIYHY------SSFQCGGVLVNPKWVLTAAHCKNDN--------- 46
Query: 88 WTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHN 120
+ LG + E E + V H F+
Sbjct: 47 YEVWLGRHNLFENENTAQFFGVTADFPHPGFNL 79
Score = 26.3 bits (59), Expect = 5.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 262 INGKESIRGAWPWQ 275
I G+E + + PWQ
Sbjct: 2 IGGRECEKNSHPWQ 15
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 77.7 bits (191), Expect = 1e-16
Identities = 28/233 (12%), Positives = 60/233 (25%), Gaps = 42/233 (18%)
Query: 36 GAWPWQVSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDW 95
P+ + C LI P+ ++T HC++N + + G
Sbjct: 15 RVAPYNSIAYITFGG-----SSCTGTLIAPNKILTNGHCVYNTASRSYSAK-GSVYPG-- 66
Query: 96 DRTEEEKSEVRIPVERIRVHEEFHN---YHHDIALLKLSRPTSARDKGVRAVCLTDADKR 152
+ + V + N +D A++K +T+
Sbjct: 67 -MNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGT 125
Query: 153 PVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLD 212
+ +G+ K + ++ +
Sbjct: 126 TIK------ISGYPGDKMRSTGKVSQWEMSGSVTRED------------------TNLAY 161
Query: 213 GFSGACIGDSGGPLQCSLKDGRWYLAGITSFG--SGYCGVGIRYSHRQPRLIN 263
G+SG + D + G+ + G +G G + + IN
Sbjct: 162 YTIDTFSGNSGSAML----DQNQQIVGVHNAGYSNGTINGGPKATAAFVEFIN 210
Score = 36.9 bits (85), Expect = 0.007
Identities = 14/147 (9%), Positives = 35/147 (23%), Gaps = 32/147 (21%)
Query: 285 ALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPL 344
A++K +T+ + +G+ K + ++ +
Sbjct: 99 AVIKTDTNIGNTVGYRSIRQVTNLTGTTIK------ISGYPGDKMRSTGKVSQWEMSGSV 152
Query: 345 HNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGS 404
G+SG + D + G+ + G
Sbjct: 153 TRED------------------TNLAYYTIDTFSGNSGSAML----DQNQQIVGVHNAGY 190
Query: 405 GCAKSGYPDVYTKLS-FYLPWIRKQIN 430
G + K + ++ +I
Sbjct: 191 SN---GTINGGPKATAAFVEFINYAKA 214
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 58.9 bits (142), Expect = 3e-10
Identities = 30/206 (14%), Positives = 52/206 (25%), Gaps = 32/206 (15%)
Query: 56 HWCGAVLI---HPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERI 112
C A ++ + S V TA HC+H+ +D E E E +
Sbjct: 21 FVCSANIVASANQSTVATAGHCLHDGNGGQFARNF--VFAPAYDYGESEHG--VWAAEEL 76
Query: 113 RVHEEFHN---YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATGWGRVK 169
E+ N + HD A L + + A N + + +G
Sbjct: 77 VTSAEWANRGDFEHDYAFAVLETKGGTTVQQQ----VGTASPIAFNQPRGQYYSAYG--- 129
Query: 170 PKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCS 229
P ++ + + G SGGP
Sbjct: 130 -------------YPAAAPFNGQELHSCHGTATNDPMGSSTQGIPCNMTGGSSGGPWFLG 176
Query: 230 LKDGRWYLAGITSFGSGYCGVGIRYS 255
S+G + + +
Sbjct: 177 -NGTGGAQNSTNSYGYTFLP-NVMFG 200
Score = 30.1 bits (67), Expect = 1.2
Identities = 9/100 (9%), Positives = 17/100 (17%), Gaps = 1/100 (1%)
Query: 310 KRPVNPKQQCVATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQ 369
+ Q + P ++ + +
Sbjct: 98 ETKGGTTVQQQVGTASPIAFNQPRGQYYSAYGYPAAAPFNGQELHSCHGTATNDPMGSST 157
Query: 370 LDGFSGACIGDSGGPLQCSLKDGRWYLAGITSFGSGCAKS 409
G SGGP S+G +
Sbjct: 158 QGIPCNMTGGSSGGPWFLG-NGTGGAQNSTNSYGYTFLPN 196
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 41.7 bits (97), Expect = 2e-04
Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 22/146 (15%)
Query: 37 AWPWQ--VSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGD 94
+ +QV P V++ ++T H + GD
Sbjct: 16 NGHYAPVTYIQVEAPTGT---FIASGVVVGKDTLLTNKHVVDATH-------------GD 59
Query: 95 WDRTEE---EKSEVRIPVERIRVHEEFH-NYHHDIALLKLSRPTSARDKGVRAVCLTDAD 150
+ ++ P + + D+A++K S + G T ++
Sbjct: 60 PHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSN 119
Query: 151 KRPVNPKQQCVATGWGRVKPKGDLVS 176
Q TG+ KP +
Sbjct: 120 NAETQTNQNITVTGYPGDKPVATMWE 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 6e-04
Identities = 71/405 (17%), Positives = 106/405 (26%), Gaps = 164/405 (40%)
Query: 37 AWPWQVSLQVLH-----PRLGLMP-----HWCGAVLIHPSWVVTAAHCIHNDIFSLPIPE 86
+ P +Q+ H LG P + GA H +VTA I
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVTAV-AI----------- 283
Query: 87 LWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH-NYHHDIALLKLSRPTSARDKGVRAVC 145
A W E F + I +L GVR
Sbjct: 284 ---AETDSW--------------------ESFFVSVRKAITVLFFI--------GVRCYE 312
Query: 146 LTDADKRPVNPKQQCVATGWGRVKP----KG-------DLVSKL-------RQIRVPLHN 187
P + + + G P D V+K +Q+ + L N
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 188 ----ISVC---RDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRWYLAGI 240
+ V + YG ++ L G LD Q R
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSG-LD--------------QS-----R------ 406
Query: 241 TSFGSGYCGVGIRYSHRQPRLINGKESIRGAWPWQNLITSFL--SA----ALLKLSRPTS 294
I +S R+ + N FL ++ LL +
Sbjct: 407 -----------IPFSERKLKFSN----------------RFLPVASPFHSHLLVPASDLI 439
Query: 295 ARDKGVRAVCLTDAD-KRPVNPKQQCVATGWGRVKPKGDLVSKL-RQI-RVPLHNISVCR 351
+D V D + PV G G + ++ I R+P+
Sbjct: 440 NKDLVKNNVSFNAKDIQIPV----YDTFDGSDLRVLSGSISERIVDCIIRLPVK------ 489
Query: 352 DKYGDSVELHGGHLCGGQLDGF-SGACIGDSG-GPLQCSLKDGRW 394
+ + + H+ LD F G G SG G L KDG
Sbjct: 490 --WETTTQFKATHI----LD-FGPG---GASGLGVLTHRNKDGTG 524
Score = 38.9 bits (90), Expect = 0.004
Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 48/134 (35%)
Query: 64 HPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFHNYH- 122
H +V A+ I+ D+ + + A +++IPV Y
Sbjct: 428 HSHLLVPASDLINKDLVKNNV--SFNA------------KDIQIPV-----------YDT 462
Query: 123 ---HDIALLKLSRPTSARDKGVRAVCLTDADKRPVN-PK-QQCVAT-----GWGRVKPKG 172
D+ +L S ++ V + + PV Q AT G G G
Sbjct: 463 FDGSDLRVLS----GSISERIVDCII-----RLPVKWETTTQFKATHILDFGPGGASGLG 513
Query: 173 DLVSKLRQ---IRV 183
L + + +RV
Sbjct: 514 VLTHRNKDGTGVRV 527
Score = 27.7 bits (61), Expect = 9.6
Identities = 31/139 (22%), Positives = 46/139 (33%), Gaps = 26/139 (18%)
Query: 237 LAGITSFGSGYCGVGIR---YSHRQPRLINGKE--SIRGAWPWQNLITSFLSAALLKLSR 291
LA + S S V R PR G+ + P + + SF AL +
Sbjct: 1773 LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR-VAASFSQEALQYVVE 1831
Query: 292 PTSARDKGVRAVCLTDADKRPVN---PKQQCVATGWGRVKPKG--DLVSKLRQIRVPLHN 346
R + V VN QQ VA G + + + L I++
Sbjct: 1832 RVGKRTGWL--VE-------IVNYNVENQQYVAAG----DLRALDTVTNVLNFIKL--QK 1876
Query: 347 ISVCRDKYGDSVELHGGHL 365
I + + S+E GHL
Sbjct: 1877 IDIIELQKSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 9e-04
Identities = 71/506 (14%), Positives = 129/506 (25%), Gaps = 175/506 (34%)
Query: 19 RYSHRQPRLINGKESIRGAWPWQVS-----------LQVLHPRLGLMPHW---CG-AVL- 62
Y ++ RL N + + VS L L P ++ G +
Sbjct: 111 MYIEQRDRLYNDNQVFA---KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 63 ----------------IHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVR 106
I W+ +C + + +L + +W + S ++
Sbjct: 168 LDVCLSYKVQCKMDFKIF--WL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 107 IPVE--RIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNP-KQQC--- 160
+ + + + + ++ LL L + V + + N C
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVL------LN-----VQ----NAKAWNAFNLSCKIL 269
Query: 161 VATGWGRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIG 220
+ T R K D +S + L + S+ + L L +
Sbjct: 270 LTT---RFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSL---------LLKYLDCRPQ 316
Query: 221 D------SGGPLQCSLKDGRWYLAGITSFGSGYCGVGIRYSHRQPRLINGKESIRGAWP- 273
D + P + S+ ESIR
Sbjct: 317 DLPREVLTTNPRRLSI------------IA---------------------ESIRD-GLA 342
Query: 274 -WQNLITSFLSAALLKLSRPTSARDKGVRAVCLTDADKRP-----------VNPKQQCVA 321
W N + KL+ + + L A+ R + ++
Sbjct: 343 TWDN----WKHVNCDKLTT---IIESSLN--VLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 322 TGWGRVKPK--GDLVSKLRQ------------IRVP---------------LHNISVCRD 352
W V +V+KL + I +P LH V D
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--D 451
Query: 353 KYGDSVELHGGHLCGGQLDGFSGACIG---------DSGGPLQCSLKDGRWYLAGITSFG 403
Y L LD + + IG + + D R+ I
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 404 SGC-AKSGYPDVYTKLSFYLPWIRKQ 428
+ A + +L FY P+I
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDN 537
Score = 29.4 bits (65), Expect = 3.1
Identities = 24/174 (13%), Positives = 44/174 (25%), Gaps = 71/174 (40%)
Query: 58 CGAVLIHPSWVVTAAHCIHNDIFSLPIPE------LWT----------AVLGDWDRT--- 98
C V P +++ + I WT + + R
Sbjct: 35 CKDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 99 ---EEEKSEVRIPVERIRVHEEFHN-YHHDIALLKLSRPTSARDKGVRAVCLTDADKRPV 154
K+E R P R++ E + ++D + K V
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---------------------KYNV 131
Query: 155 NPKQQCVATGWGRVKPKGDLVSKLRQIR----VPLHN----------ISVCRDK 194
+ R++P L L ++R V + + VC
Sbjct: 132 S-----------RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Score = 28.3 bits (62), Expect = 6.5
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 34/107 (31%)
Query: 265 KESIRGAWPWQNLITSFLSAALLKLSRPT----SARDKGVRAVCLTDADKRPVNPKQQCV 320
+E +R + + + S + + S T RD+ + K V+
Sbjct: 84 EEVLRINYKF---LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVS------ 132
Query: 321 ATGWGRVKPKGDLVSKLRQIR----VPLHN----------ISVCRDK 353
R++P L L ++R V + + VC
Sbjct: 133 -----RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/209 (13%), Positives = 42/209 (20%), Gaps = 36/209 (17%)
Query: 56 HWCGAVLIHPS------WVVTAAHCIHN-DIFSLPIPELWTAVLGDWDRTEEEKSEVRIP 108
C L++ + + +TA HC + I W S
Sbjct: 34 LACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPASGANGD 93
Query: 109 VERIRVHEE----FHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPVNPKQQCVATG 164
+ D LL+L+ NP G
Sbjct: 94 GSMSQTQSGSTVKATYATSDFTLLELN--------------------NAANPAFNLFWAG 133
Query: 165 WGRVKPKGDLVSKLRQIRVPLHNISVCRD--KYGDSVELHGGHLCGGQLDGFSGACIGDS 222
W R + V IS + G Q G S
Sbjct: 134 WDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGS 193
Query: 223 GGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
G + + G G C
Sbjct: 194 SGSP---IYSPEKRVLGQLHGGPSSCSAT 219
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 39.2 bits (91), Expect = 0.002
Identities = 33/197 (16%), Positives = 57/197 (28%), Gaps = 42/197 (21%)
Query: 61 VLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH- 119
VLI + +VT H + + EK+E P + E
Sbjct: 53 VLIGKNTIVTNYHVAREA-----AKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKES 107
Query: 120 --NYHHDIALLKLSRPTSARDKG--VRAVCLTDADKRPVNPKQQCVATGWGRVKPKGDLV 175
D+A++KL G ++ + D + G+ P
Sbjct: 108 PYGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKG--DKYSLLGY----PYNYSA 161
Query: 176 SKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGFSGACIGDSGGPLQCSLKDGRW 235
L Q ++ + N Q G++ G+SG + + +
Sbjct: 162 YSLYQSQIEMFN--------------------DSQYFGYTEV--GNSGSGIF----NLKG 195
Query: 236 YLAGITSFGSGYCGVGI 252
L GI S G + I
Sbjct: 196 ELIGIHSGKGGQHNLPI 212
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 38.9 bits (90), Expect = 0.002
Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 14/148 (9%)
Query: 37 AWPWQ--VSLQVLHPRLGLMPHWCGAVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGD 94
+ +QV P V++ ++T H + +
Sbjct: 16 NGHYAPVTYIQVEAPTGT---FIASGVVVGKDTLLTNKHVVDA-----THGDPHALKAFP 67
Query: 95 WDRTEEEKSEVRIPVERIRVHEEFHNYHHDIALLKLSRPTSARDKGVRAVCLTDADKRPV 154
++ E+I ++ D+A++K S + G T ++
Sbjct: 68 SAINQDNYPNGGFTAEQIT----KYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAET 123
Query: 155 NPKQQCVATGWGRVKPKGDLVSKLRQIR 182
Q TG+ KP + +I
Sbjct: 124 QVNQNITVTGYPGDKPVATMWESKGKIT 151
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A
{Escherichia coli O157}
Length = 968
Score = 36.9 bits (84), Expect = 0.013
Identities = 31/212 (14%), Positives = 56/212 (26%), Gaps = 44/212 (20%)
Query: 60 AVLIHPSWVVTAAHCIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVERIRVHEEFH 119
I ++ +TA H N + +W + + + +
Sbjct: 59 TTSIGGAYSITATHNTKNHH---------SVATQNWGNSTYK------QTDW-------N 96
Query: 120 NYHHDIALLKLSR--------------PTSARDKGVRAVCLTDADKRPVNPKQQCVATGW 165
H D A+ +L + S + R +K+ + + +G
Sbjct: 97 TSHPDFAVSRLDKFVVETRGATEGADISLSKQQALERYGVNYKGEKKLIAFR---AGSGV 153
Query: 166 GRVKPKGDLVSKLRQIRVPLHNISVCRDKYGDSVELHGGHLCGGQLDGF-SGACIGDSGG 224
VK G V + L Q D F + A GD+G
Sbjct: 154 VSVKKNGR---ITPFNEVSYKPEMLNGSFVHIDDWSGWLILTNNQFDEFNNIASQGDAGS 210
Query: 225 PLQC-SLKDGRWYLAGITSFGSGYCGVGIRYS 255
L + +W +AG Y +
Sbjct: 211 ALFVYDNQKKKWVVAGTVWGIYNYANGKNHAA 242
>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta
helix, hydrolase, M protease, secreted, transmembrane,
virulence; 1.75A {Haemophilus influenzae}
Length = 989
Score = 35.1 bits (79), Expect = 0.051
Identities = 45/235 (19%), Positives = 74/235 (31%), Gaps = 46/235 (19%)
Query: 60 AVLIHPSWVVTAAH--CIHNDIFSLPIPELWTAVLGDWDRTEEEKSEVRIPVER------ 111
A LI+P +VV H +++ + R + VE+
Sbjct: 62 ATLINPQYVVGVKHVSNGVSELHFGNLNGNMNNGNAKSHRDVSSEENRYFSVEKNEYPTK 121
Query: 112 -----IRVHEEFHNYHHDIALLKLSR------PTSARDKGVRAVCLTDADKRPVNPKQQC 160
+ ++ D + +L + P A A D +K P +
Sbjct: 122 LNGKAVTTEDQTQKRREDYYMPRLDKFVTEVAPIEASTASSDAGTYNDQNKYPAFVR--- 178
Query: 161 VATGWGRVKPKGDLVSKLRQI-RVPLHNISVCRDKY---------------------GDS 198
+ +G + KGD S + V +N+ + D Y G+S
Sbjct: 179 LGSGSQFIYKKGDNYSLILNNHEVGGNNLKLVGDAYTYGIAGTPYKVNHENNGLIGFGNS 238
Query: 199 VELHGGHLCGGQLDGF-SGACIGDSGGPLQC-SLKDGRWYLAGITSFGSGYCGVG 251
E H D + A +GDSG PL + G+W G F +GY
Sbjct: 239 KEEHSDPKGILSQDPLTNYAVLGDSGSPLFVYDREKGKWLFLGSYDFWAGYNKKS 293
Score = 31.6 bits (70), Expect = 0.61
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 374 SGACIGDSGGPLQC-SLKDGRWYLAGITSFGSGCAKSGY 411
+ A +GDSG PL + G+W G F +G K +
Sbjct: 256 NYAVLGDSGSPLFVYDREKGKWLFLGSYDFWAGYNKKSW 294
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.59
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 12/38 (31%)
Query: 265 KESIRGAWPWQNLITSFLSAALLKLSRPTSARDKGVRA 302
K++++ L S LKL SA ++A
Sbjct: 19 KQALK------KLQAS------LKLYADDSAPALAIKA 44
>3syj_A Adhesion and penetration protein autotransporter; bacterial
aggregation and biofilm formation, SELF-associatin
autotransporter (SAAT); 2.20A {Haemophilus influenzae}
Length = 1011
Score = 30.5 bits (67), Expect = 1.6
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 220 GDSGGPLQC-SLKDGRWYLAGITSFGSGYCGVGIRYS 255
GDSG P+ + +W + GI G+ + G +
Sbjct: 216 GDSGSPMFIYDAEKQKWLINGILREGNPFEGKENGFQ 252
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 28.3 bits (63), Expect = 3.7
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 215 SGACI--GDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
+ C GDSGGPL R G+TS GSG C G
Sbjct: 132 TNVCAEPGDSGGPL---YSGTR--AIGLTSGGSGNCSSG 165
>2do8_A UPF0301 protein HD_1794; NESG, GFT structral genomics, HDR14,
structural genomics, PSI, protein structure initiative;
NMR {Haemophilus ducreyi} SCOP: d.310.1.1
Length = 188
Score = 28.2 bits (63), Expect = 3.8
Identities = 4/27 (14%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 66 SWVVTAAHCIHNDIFSLPIPELWTAVL 92
W+++ A+ + +F + W
Sbjct: 147 YWLLSEAN--NQTLFETSYLDRWVEAN 171
>2gs5_A Conserved hypothetical protein; corvnebacterium diphtheria,
structural genomics, PSI; 1.50A {Corynebacterium
diphtheriae nctc 13129ORGANISM_TAXID} SCOP: d.310.1.1
PDB: 2hrx_A
Length = 198
Score = 28.2 bits (63), Expect = 4.2
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 66 SWVVTAAHCIHNDIFSLPIPELWTAVL 92
W V A +D+ + ++W V+
Sbjct: 154 DWFVAPAL--PSDVTAPGSVDVWGDVM 178
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 27.9 bits (62), Expect = 4.6
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 379 GDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYL 422
GDSGG GI S SGC+ + ++ ++ L
Sbjct: 141 GDSGGAH---FAGSV--ALGIHSGSSGCSGTAGSAIHQPVTEAL 179
Score = 27.2 bits (60), Expect = 10.0
Identities = 11/32 (34%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 220 GDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
GDSGG GI S SG G
Sbjct: 141 GDSGGAH---FAGSV--ALGIHSGSSGCSGTA 167
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 27.5 bits (61), Expect = 5.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 379 GDSGGPLQCSLKDGRWYLAGITSFGSGCAKSGYPDVYTKLSFYL 422
GDSGGP L + G+TS G+G +SG + ++ L
Sbjct: 138 GDSGGPW---LTGSQ--AQGVTSGGTGDCRSGGITFFQPINPLL 176
Score = 27.1 bits (60), Expect = 9.9
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 220 GDSGGPLQCSLKDGRWYLAGITSFGSGYCGVG 251
GDSGGP L + G+TS G+G C G
Sbjct: 138 GDSGGPW---LTGSQ--AQGVTSGGTGDCRSG 164
>2haf_A Putative translation repressor; alpha/beta, X-RAY crystallography,
structural genomics, PSI, protein structure initiative;
2.88A {Vibrio cholerae} SCOP: d.310.1.1 PDB: 2aj2_A
Length = 211
Score = 27.2 bits (60), Expect = 9.8
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 66 SWVVTAAHCIHNDIFSLPIPELWTAVL 92
SW+ A IF+ P+ E W +
Sbjct: 161 SWLTIEAD--PELIFNTPVHEKWQKAI 185
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 27.1 bits (61), Expect = 10.0
Identities = 12/70 (17%), Positives = 16/70 (22%), Gaps = 13/70 (18%)
Query: 282 LSAALLKLSRPTSARDKGVRAVCLTDADK--------RPVNPKQQCVATGWGRVKPKGDL 333
L+ L +GVRAV L + + DL
Sbjct: 42 LARVWRDL-----EAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDL 96
Query: 334 VSKLRQIRVP 343
V P
Sbjct: 97 VLGPLNFPRP 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.465
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,073,343
Number of extensions: 428726
Number of successful extensions: 2403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1350
Number of HSP's successfully gapped: 310
Length of query: 436
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 340
Effective length of database: 4,021,377
Effective search space: 1367268180
Effective search space used: 1367268180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)