BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1605
(718 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ERO|A Chain A, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERO|B Chain B, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERP|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERP|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERQ|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
pdb|2ERQ|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
Length = 427
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 101/205 (49%), Gaps = 38/205 (18%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMA-----PSSRLFD------------------------- 76
GHNLG++HD CTC + C+MA +S LF
Sbjct: 155 GHNLGMDHDKDTCTCGTRPCVMAGALSCEASFLFSDCSQKDHREFLIKNMPQCILKKPLK 214
Query: 77 ----SP-VCGNGFVXXXXXXXXXXXXSCKNACCNATTCMLNVNATCATGSCCNLETCQPH 131
SP VCGN FV +C++ CC+ATTC L A CA G CC + C+
Sbjct: 215 TDVVSPAVCGNYFVEVGEECDCGSPRTCRDPCCDATTCKLRQGAQCAEGLCC--DQCRFK 272
Query: 132 TAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLL 191
AG +CRAA ECD+ + CTG S C +D F+ +G+ CK +CY G C +DQC+ L
Sbjct: 273 GAGTECRAAKDECDMADVCTGRSAEC-TDRFQRNGQPCKNNNGYCYNGKCPIMADQCIAL 331
Query: 192 WGPSASSSDKRCFDLNTSGNRHGNC 216
+GP A+ S CF N GN +G C
Sbjct: 332 FGPGATVSQDACFQFNREGNHYGYC 356
>pdb|3K7L|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
Distinct Activities Highlight The Disulfide Patterns In
The D Domain Of Adamalysin Family Proteins
Length = 422
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 95/204 (46%), Gaps = 36/204 (17%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAP----------------------------------SS 72
GHNLG+ HD CTC ++C+M+ S+
Sbjct: 153 GHNLGMNHDRGFCTCGFNKCVMSTRRTKPAYQFSSCSVREHQRYLLRDRPQCILNKPLST 212
Query: 73 RLFDSPVCGNGFVXXXXXXXXXXXXSCKNACCNATTCMLNVNATCATGSCCNLETCQPHT 132
+ P+CGN FV C++ACCNATTC L A C + CC E C+
Sbjct: 213 DIVSPPICGNYFVEVGEECDCGSPADCQSACCNATTCKLQHEAQCDSEECC--EKCKFKG 270
Query: 133 AGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLW 192
A +CRAA +CDLPE CTG S CP+DVF+ +G C+ + +CY G C ++QC+ L
Sbjct: 271 ARAECRAAKDDCDLPELCTGQSAECPTDVFQRNGLPCQNNQGYCYNGKCPIMTNQCIALR 330
Query: 193 GPSASSSDKRCFDLNTSGNRHGNC 216
GP S CF LN G C
Sbjct: 331 GPGVKVSRDSCFTLNQRTRGCGLC 354
>pdb|3HDB|A Chain A, Crystal Structure Of Aahiv, A Metalloproteinase From Venom
Of Agkistrodon Acutus
Length = 417
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 92/205 (44%), Gaps = 37/205 (18%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS-----SRLFDS------------------------ 77
GHNLG+ HD C C CIM PS S+ F +
Sbjct: 144 GHNLGIHHDDGYCYCGGYPCIMGPSISPEPSKFFSNCSYIQCWDFIMNHNPECIDNEPLG 203
Query: 78 ------PVCGNGFVXXXXXXXXXXXXSCKNACCNATTCMLNVNATCATGSCCNLETCQPH 131
P+CGN + +C+N CC+A TC L + C G CC E C+
Sbjct: 204 TDIISPPLCGNELLEVGEECDCGTPENCQNPCCDAATCKLKSGSQCGHGKCC--EQCKFR 261
Query: 132 TAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLL 191
T+G +CRA+ ECD E CTG S CP+DVF +GE C +CY G+C QC L
Sbjct: 262 TSGTECRASMSECDPAEHCTGQSSECPADVFHKNGEPCLDNYGYCYNGNCPIMYHQCYAL 321
Query: 192 WGPSASSSDKRCFDLNTSGNRHGNC 216
+G ++ CF+ N GN +G C
Sbjct: 322 FGADIYEAEDSCFESNKKGNYYGYC 346
>pdb|3DSL|B Chain B, The Three-Dimensional Structure Of Bothropasin, The Main
Hemorrhagic Factor From Bothrops Jararaca Venom.
pdb|3DSL|A Chain A, The Three-Dimensional Structure Of Bothropasin, The Main
Hemorrhagic Factor From Bothrops Jararaca Venom
Length = 419
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 92/205 (44%), Gaps = 37/205 (18%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS-----SRLFDS------------------------ 77
GHNLG+ HDT C+C CIM P+ S+ F +
Sbjct: 146 GHNLGIHHDTDFCSCGDYPCIMGPTISNEPSKFFSNCSYIQCWDFIMKENPQCILNEPLG 205
Query: 78 ------PVCGNGFVXXXXXXXXXXXXSCKNACCNATTCMLNVNATCATGSCCNLETCQPH 131
PVCGN + +C+N CC+A TC L + C G CC E C+
Sbjct: 206 TDIVSPPVCGNELLEVGEECDCGTPENCQNECCDAATCKLKSGSQCGHGDCC--EQCKFS 263
Query: 132 TAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLL 191
+G +CRA+ ECD E CTG S CP+DVF +G+ C +CY G+C QC L
Sbjct: 264 KSGTECRASMSECDPAEHCTGQSSECPADVFHKNGQPCLDNYGYCYNGNCPIMYHQCYAL 323
Query: 192 WGPSASSSDKRCFDLNTSGNRHGNC 216
+G ++ CF N GN +G C
Sbjct: 324 FGADVYEAEDSCFKDNQKGNYYGYC 348
>pdb|2DW0|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW0|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW1|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW1|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW2|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
pdb|2DW2|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
Length = 419
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 90/205 (43%), Gaps = 37/205 (18%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS----------------------------------- 71
GHNLG+ HD+ C+C CIM P
Sbjct: 146 GHNLGINHDSGYCSCGDYACIMRPEISPEPSTFFSNCSYFECWDFIMNHNPECILNEPLG 205
Query: 72 SRLFDSPVCGNGFVXXXXXXXXXXXXSCKNACCNATTCMLNVNATCATGSCCNLETCQPH 131
+ + PVCGN + +C+N CC+A TC L + C G CC E C+
Sbjct: 206 TDIISPPVCGNELLEVGEECDCGTPENCQNECCDAATCKLKSGSQCGHGDCC--EQCKFS 263
Query: 132 TAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLL 191
+G +CRA+ ECD E CTG S CP+DVF +G+ C +CY G+C QC L
Sbjct: 264 KSGTECRASMSECDPAEHCTGQSSECPADVFHKNGQPCLDNYGYCYNGNCPIMYHQCYDL 323
Query: 192 WGPSASSSDKRCFDLNTSGNRHGNC 216
+G ++ CF+ N GN +G C
Sbjct: 324 FGADVYEAEDSCFERNQKGNYYGYC 348
>pdb|2E3X|A Chain A, Crystal Structure Of Russell's Viper Venom
Metalloproteinase
Length = 427
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 90/204 (44%), Gaps = 37/204 (18%)
Query: 48 HNLGLEHDTTECTCPSDRCIMAPS-----SRLFDS------------------------- 77
HNLG+ HD C C C+M+P S+LF +
Sbjct: 149 HNLGMYHDGKNCICNDSSCVMSPVLSDQPSKLFSNCSIHDYQRYLTRYKPKCIFNPPLRK 208
Query: 78 -----PVCGNGFVXXXXXXXXXXXXSCKNACCNATTCMLNVNATCATGSCCNLETCQPHT 132
PVCGN +C+N CC+A TC L A C G CC C+ T
Sbjct: 209 DIVSPPVCGNEIWEEGEECDCGSPANCQNPCCDAATCKLKPGAECGNGLCC--YQCKIKT 266
Query: 133 AGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLW 192
AG CR A ECD+PE CTG S CP D + +G+ C+ +CY G C +QC+ L+
Sbjct: 267 AGTVCRRARDECDVPEHCTGQSAECPRDQLQQNGKPCQNNRGYCYNGDCPIMRNQCISLF 326
Query: 193 GPSASSSDKRCFDLNTSGNRHGNC 216
G A+ + CF N G+ +G C
Sbjct: 327 GSRANVAKDSCFQENLKGSYYGYC 350
>pdb|3K7N|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
Distinct Activities Highlight The Disulfide Patterns In
The D Domain Of Adamalysin Family Proteins
Length = 397
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 89/204 (43%), Gaps = 53/204 (25%)
Query: 47 GHNLGLEHDTTECTCPSDRCIM-----AP-----------------------------SS 72
GHNLG+ HD C C CIM AP S+
Sbjct: 148 GHNLGIHHDKASCICIPGPCIMLKKRTAPAFQFSSCSIREYREYLLRDRPQCILNKPLST 207
Query: 73 RLFDSPVCGNGFVXXXXXXXXXXXXSCKNACCNATTCMLNVNATCATGSCCNLETCQPHT 132
+ P+CGN FV +C++ACCNA TCQ
Sbjct: 208 DIVSPPICGNYFVEVGEECDCGSPQACQSACCNAA-------------------TCQFKG 248
Query: 133 AGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLW 192
A +CR A +CDLPE CTG S CP+D + +G C+ +++CY G+C T ++QC+ L
Sbjct: 249 AETECRVAKDDCDLPELCTGQSAECPTDSLQRNGHPCQNNQSYCYNGTCPTLTNQCITLL 308
Query: 193 GPSASSSDKRCFDLNTSGNRHGNC 216
GP + S K CF+LN G+ C
Sbjct: 309 GPHFTVSPKGCFNLNMRGDDGSFC 332
>pdb|3G5C|A Chain A, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
pdb|3G5C|B Chain B, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
Length = 510
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 84/167 (50%), Gaps = 10/167 (5%)
Query: 66 CIMAPSSRLFDSPVCGNGFVXXXXXXXXXXXXSC---KNACCNATTCMLNVNATCATGSC 122
C+ S+L D P CGNGF+ C CC C L ++ C+ G C
Sbjct: 201 CLFNKPSKLLDPPECGNGFIETGEECDCGTPAECVLEGAECCKK--CTLTQDSQCSDGLC 258
Query: 123 CNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCR 182
C + C+ G CR A +CD+ E C+G+S C ++ KMDG +C G + C+ G C+
Sbjct: 259 C--KKCKFQPMGTVCREAVNDCDIRETCSGNSSQCAPNIHKMDGYSCDGVQGICFGGRCK 316
Query: 183 THSDQCLLLWGPSASSSDKRCFD-LNTSGNRHGNCGYYKPNMTYAKC 228
T QC +WG ++SDK C++ LN G GNCG K T+ +C
Sbjct: 317 TRDRQCKYIWGQKVTASDKYCYEKLNIEGTEKGNCG--KDKDTWIQC 361
>pdb|3UCI|A Chain A, Crystal Structure Of Rhodostomin Arlddl Mutant
Length = 72
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 100 KNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCP 158
+N CC+A TC L A C G CC E C+ AG+ CR A + DL + CTG S CP
Sbjct: 14 ENPCCDAATCKLRPGAQCGEGLCC--EQCKFSRAGKICRIARLD-DLDDRCTGQSADCP 69
>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 13 ADCPFNCHDQGVCNSRGHCHCHPGFAPPYCE 43
A+CP C + G CN R C C GF P+CE
Sbjct: 149 AECPGGCRNGGFCNERRICECPDGFHGPHCE 179
>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 13 ADCPFNCHDQGVCNSRGHCHCHPGFAPPYCE 43
A+CP C + G CN R C C GF P+CE
Sbjct: 149 AECPGGCRNGGFCNERRICECPDGFHGPHCE 179
>pdb|3C05|B Chain B, Crystal Structure Of Acostatin From Agkistrodon Contortrix
Contortrix
pdb|3C05|D Chain D, Crystal Structure Of Acostatin From Agkistrodon Contortrix
Contortrix
Length = 64
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 101 NACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSD 160
N CC+A TC L + CA G CC + C+ G CR A + DL ++C G S CP +
Sbjct: 5 NPCCDAATCKLTTGSQCADGLCC--DQCKFMKEGTVCRRARGD-DLDDYCNGISAGCPRN 61
Query: 161 VF 162
F
Sbjct: 62 PF 63
>pdb|3C05|A Chain A, Crystal Structure Of Acostatin From Agkistrodon Contortrix
Contortrix
pdb|3C05|C Chain C, Crystal Structure Of Acostatin From Agkistrodon Contortrix
Contortrix
Length = 62
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 100 KNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEF-CTGDSEFCP 158
KN CC+A TC L + CA G CC + C+ AG+ CR A D P++ CTG S CP
Sbjct: 3 KNPCCDAATCKLTPGSQCAEGLCC--DQCKFIKAGKICRRARG--DNPDYRCTGQSGDCP 58
Query: 159 SDVF 162
F
Sbjct: 59 RKHF 62
>pdb|1L3X|A Chain A, Solution Structure Of Novel Disintegrin Salmosin
Length = 73
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 101 NACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSD 160
N CC+A TC L A CA G CC+ C+ G CR A + DL ++C G S CP +
Sbjct: 13 NPCCDAATCKLRQGAQCAEGLCCD--QCRFMKEGTICRRARGD-DLDDYCNGISAGCPRN 69
Query: 161 VF 162
F
Sbjct: 70 PF 71
>pdb|1ND1|A Chain A, Amino Acid Sequence And Crystal Structure Of Bap1, A
Metalloproteinase From Bothrops Asper Snake Venom That
Exerts Multiple Tissue-Damaging Activities
Length = 202
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMA 69
GHNLG++HDT C+C + CIMA
Sbjct: 145 GHNLGIDHDTGSCSCGAKSCIMA 167
>pdb|2W12|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W13|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W14|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W15|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
Length = 202
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMA 69
GHNLG+ HDT C+C + CIMA
Sbjct: 145 GHNLGIHHDTGSCSCGAKSCIMA 167
>pdb|2PJI|A Chain A, Solution Structure Of Rhodostomin P48a Mutant
Length = 68
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 100 KNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLP-EFCTGDSEFCP 158
+N CC+A TC L A C G CC E C+ AG+ CR A D+P + CTG S CP
Sbjct: 10 ENPCCDAATCKLRPGAQCGEGLCC--EQCKFSRAGKICRIARG--DMPDDRCTGQSADCP 65
>pdb|3GBO|A Chain A, Crystal Structure Of Bmoompalpha-I, A Non-Hemorrhagic
Metalloproteinase Isolated From Bothrops Moojeni Snake
Venom
Length = 200
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS 71
GHNLG+ HD +C C + CIMA S
Sbjct: 143 GHNLGMHHDGNQCHCDAASCIMADS 167
>pdb|1BSW|A Chain A, Acutolysin A From Snake Venom Of Agkistrodon Acutus At Ph
7.5
Length = 197
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS 71
HNLG+ HD C+C CIM+PS
Sbjct: 142 AHNLGVSHDEGSCSCGGKSCIMSPS 166
>pdb|1BUD|A Chain A, Acutolysin A From Snake Venom Of Agkistrodon Acutus At Ph
5.0
Length = 197
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS 71
HNLG+ HD C+C CIM+PS
Sbjct: 142 AHNLGVSHDEGSCSCGGKSCIMSPS 166
>pdb|2LJV|A Chain A, Solution Structure Of Rhodostomin G50l Mutant
Length = 68
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 100 KNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLP-EFCTGDSEFCP 158
+N CC+A TC L A C G CC E C+ AG+ CR D+P + CTG S CP
Sbjct: 10 ENPCCDAATCKLRPGAQCGEGLCC--EQCKFSRAGKICRIPRL--DMPDDRCTGQSADCP 65
>pdb|1N4Y|A Chain A, Refined Structure Of Kistrin
pdb|2PJF|A Chain A, Solution Structure Of Rhodostomin
Length = 68
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 100 KNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLP-EFCTGDSEFCP 158
+N CC+A TC L A C G CC E C+ AG+ CR D+P + CTG S CP
Sbjct: 10 ENPCCDAATCKLRPGAQCGEGLCC--EQCKFSRAGKICRIPRG--DMPDDRCTGQSADCP 65
>pdb|2PJG|A Chain A, Solution Structure Of Rhodostomin D51e Mutant
Length = 68
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 100 KNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLP-EFCTGDSEFCP 158
+N CC+A TC L A C G CC E C+ AG+ CR E +P + CTG S CP
Sbjct: 10 ENPCCDAATCKLRPGAQCGEGLCC--EQCKFSRAGKICRIPRGE--MPDDRCTGQSADCP 65
>pdb|1Q7J|A Chain A, Structural Analysis Of Integrin Alpha Iib Beta 3-
Disintegrin With The Akgdwn Motif
Length = 68
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 100 KNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCP 158
+N CC+A TC L A C G CC E C+ AG+ CR A + + + CTG S CP
Sbjct: 10 ENPCCDAATCKLRPGAQCGEGLCC--EQCKFSRAGKICRIAKGDWN-DDRCTGQSADCP 65
>pdb|1Q7I|A Chain A, Structural Analysis Of Integrin Alpha Iib Beta 3-
Disintegrin With The Akgdwn Motif
Length = 68
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 100 KNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCP 158
+N CC+A TC L A C G CC E C+ AG+ CR A + + + CTG S CP
Sbjct: 10 ENPCCDAATCKLRPGAQCGEGLCC--EQCKFSRAGKICRIARGDWN-DDRCTGQSADCP 65
>pdb|1IAG|A Chain A, First Structure Of A Snake Venom Metalloproteinase: A
Prototype For Matrix
Metalloproteinases(Slash)collagenases
Length = 202
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAP 70
GHNLG+EHD +C + CIM P
Sbjct: 145 GHNLGMEHDGKDCLRGASLCIMRP 168
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 13 ADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEY----PGGHNLGLEHDTTECTCP 62
A+CP C + G CN R C C GF P+CE P N GL C CP
Sbjct: 149 AECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICP 202
>pdb|1DTH|A Chain A, Metalloprotease
pdb|1DTH|B Chain B, Metalloprotease
Length = 203
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAP 70
GHNLG+EHD +C + CIM P
Sbjct: 146 GHNLGMEHDGKDCLRGASLCIMRP 169
>pdb|2AIG|P Chain P, Adamalysin Ii With Peptidomimetic Inhibitor Pol647
pdb|3AIG|A Chain A, Adamalysin Ii With Peptidomimetic Inhibitor Pol656
Length = 202
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAP 70
GHNLG+EHD +C + CIM P
Sbjct: 145 GHNLGMEHDGKDCLRGASLCIMRP 168
>pdb|4AIG|A Chain A, Adamalysin Ii With Phosphonate Inhibitor
Length = 201
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAP 70
GHNLG+EHD +C + CIM P
Sbjct: 144 GHNLGMEHDGKDCLRGASLCIMRP 167
>pdb|1HTD|A Chain A, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Ht-D)
pdb|1HTD|B Chain B, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Ht-D)
pdb|1ATL|A Chain A, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Form-D)
pdb|1ATL|B Chain B, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Form-D)
Length = 202
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAP 70
GHNLG+EHD +C + CIM P
Sbjct: 145 GHNLGMEHDGKDCLRGASLCIMRP 168
>pdb|1QUA|A Chain A, Crystal Structure Of Acutolysin-c, A Hemorrhagic Toxin
From The Snake Venom Of Agkistrodon Acutus, At 2.2 A
Resolution
Length = 197
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAP 70
GHNLG+ HD C+C + CIMAP
Sbjct: 144 GHNLGMNHDGAGCSCAT--CIMAP 165
>pdb|1YP1|A Chain A, Crystal Structure Of A Non-hemorrhagic Fibrin(ogen)olytic
Metalloproteinase From Venom Of Agkistrodon Acutus
Length = 202
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS 71
GHNLG+ HD +C D CIMAPS
Sbjct: 144 GHNLGMLHDDGY-SCDCDVCIMAPS 167
>pdb|1KUF|A Chain A, High-Resolution Crystal Structure Of A Snake Venom
Metalloproteinase From Taiwan Habu
pdb|1KUI|A Chain A, Crystal Structure Of A Taiwan Habu Venom Metalloproteinase
Complexed With Peqw.
pdb|1KUK|A Chain A, Crystal Structure Of A Taiwan Habu Venom Metalloproteinase
Complexed With Pekw
Length = 203
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAP-----SSRLF 75
GHNLG+EHD + C D CIM+ S+LF
Sbjct: 147 GHNLGMEHDDKD-KCKCDTCIMSAVISDKQSKLF 179
>pdb|1J2L|A Chain A, Crystal Structure Of The Disintegrin, Trimestatin
Length = 70
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 101 NACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLP-EFCTGDSEFCP 158
N CC+A TC L A CA G CC + C+ CR A D P + CTG S CP
Sbjct: 11 NPCCDAATCKLRPGAQCADGLCC--DQCRFKKKRTICRIARG--DFPDDRCTGQSADCP 65
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 623 MAALANVDHNPNDNIYAVIEESPATSDLGLLGEIVSEIQARNTE 666
MAA+AN+ +D + AV++ +TSD + IVS+++ E
Sbjct: 241 MAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIE 284
>pdb|1FVL|A Chain A, The Nuclear Magnetic Resonance Solution Structure Of
Flavoridin, An Antagonist Of The Platelet Gp Iib-Iiia
Receptor
Length = 70
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 101 NACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLP-EFCTGDSEFCP 158
N CC+A TC L A CA G CC + C+ CR A D P + CTG S CP
Sbjct: 11 NPCCDAATCKLRPGAQCADGLCC--DQCRFKKKRTICRIARG--DFPDDRCTGLSNDCP 65
>pdb|1WNI|A Chain A, Crystal Structure Of H2-Proteinase
Length = 201
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMA 69
GHNLG+EHD + C + CIM+
Sbjct: 145 GHNLGMEHDDKD-KCKCEACIMS 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,151,582
Number of Sequences: 62578
Number of extensions: 720640
Number of successful extensions: 1231
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1146
Number of HSP's gapped (non-prelim): 93
length of query: 718
length of database: 14,973,337
effective HSP length: 106
effective length of query: 612
effective length of database: 8,340,069
effective search space: 5104122228
effective search space used: 5104122228
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)