Query psy1605
Match_columns 718
No_of_seqs 230 out of 1506
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 19:34:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3607|consensus 100.0 6E-49 1.3E-53 446.7 9.6 254 18-274 297-611 (716)
2 KOG3658|consensus 99.9 2.1E-28 4.6E-33 272.2 8.4 150 41-195 395-588 (764)
3 PF08516 ADAM_CR: ADAM cystein 99.8 1.4E-20 3E-25 173.5 1.2 99 165-265 1-103 (117)
4 smart00608 ACR ADAM Cysteine-R 99.8 8.4E-20 1.8E-24 172.4 5.8 98 165-264 1-102 (137)
5 smart00050 DISIN Homologues of 99.7 1.4E-18 3E-23 149.9 5.2 75 86-162 1-75 (75)
6 PF00200 Disintegrin: Disinteg 99.7 1.8E-18 3.8E-23 149.3 1.1 76 86-163 1-76 (76)
7 KOG3538|consensus 99.2 3.7E-11 8.1E-16 141.2 10.5 215 18-248 294-556 (845)
8 cd04273 ZnMc_ADAMTS_like Zinc- 98.6 1.5E-08 3.3E-13 100.4 2.8 66 18-83 117-192 (207)
9 cd04269 ZnMc_adamalysin_II_lik 98.5 1.7E-08 3.6E-13 98.4 -0.4 66 18-83 105-178 (194)
10 cd04270 ZnMc_TACE_like Zinc-de 98.4 5.4E-08 1.2E-12 99.7 -0.9 64 20-83 129-223 (244)
11 cd04271 ZnMc_ADAM_fungal Zinc- 98.3 2.4E-07 5.1E-12 94.5 2.9 66 18-83 114-211 (228)
12 PF01421 Reprolysin: Reprolysi 98.3 2.8E-08 6.1E-13 97.4 -4.4 66 18-83 105-181 (199)
13 cd04267 ZnMc_ADAM_like Zinc-de 98.3 4.2E-07 9E-12 88.4 2.7 64 18-81 108-183 (192)
14 cd04272 ZnMc_salivary_gland_MP 98.0 1.2E-06 2.5E-11 87.9 -0.6 65 18-83 121-205 (220)
15 KOG1225|consensus 97.9 2E-05 4.3E-10 89.4 8.1 91 12-139 249-342 (525)
16 KOG1226|consensus 97.0 0.0015 3.3E-08 76.6 7.9 129 17-182 467-608 (783)
17 cd00203 ZnMc Zinc-dependent me 96.8 0.0004 8.8E-09 65.3 1.1 53 19-71 71-143 (167)
18 KOG1225|consensus 96.6 0.0069 1.5E-07 69.3 8.7 158 13-195 177-365 (525)
19 PF13688 Reprolysin_5: Metallo 96.2 0.00055 1.2E-08 66.8 -2.6 34 38-71 142-187 (196)
20 PF13574 Reprolysin_2: Metallo 95.2 0.002 4.3E-08 63.2 -3.0 31 41-71 114-151 (173)
21 PF13582 Reprolysin_3: Metallo 93.8 0.0057 1.2E-07 55.4 -3.2 18 38-55 107-124 (124)
22 PF13583 Reprolysin_4: Metallo 93.6 0.018 3.9E-07 58.1 -0.3 30 40-69 139-176 (206)
23 KOG3607|consensus 93.5 0.049 1.1E-06 64.7 2.9 35 11-45 624-658 (716)
24 PF07974 EGF_2: EGF-like domai 92.7 0.1 2.2E-06 39.0 2.5 26 17-42 6-32 (32)
25 PRK13267 archaemetzincin-like 92.2 0.043 9.4E-07 55.0 0.1 48 18-71 86-152 (179)
26 COG1913 Predicted Zn-dependent 91.2 0.052 1.1E-06 54.7 -0.5 24 43-72 129-152 (181)
27 KOG1226|consensus 82.5 1.9 4E-05 51.8 5.3 28 18-46 556-583 (783)
28 PF07998 Peptidase_M54: Peptid 80.9 0.27 5.9E-06 50.2 -1.9 22 43-71 150-171 (194)
29 KOG3658|consensus 78.4 4.1 8.8E-05 48.6 6.2 24 162-185 630-654 (764)
30 cd04268 ZnMc_MMP_like Zinc-dep 77.5 0.35 7.6E-06 45.8 -2.2 17 41-57 97-113 (165)
31 PF05548 Peptidase_M11: Gameto 76.7 0.93 2E-05 49.2 0.5 28 41-68 153-181 (314)
32 PF00413 Peptidase_M10: Matrix 75.4 0.57 1.2E-05 43.7 -1.4 24 42-71 109-132 (154)
33 smart00235 ZnMc Zinc-dependent 74.3 0.55 1.2E-05 43.7 -1.7 17 41-57 89-105 (140)
34 KOG0994|consensus 73.5 9 0.0002 48.3 7.5 56 108-172 1070-1130(1758)
35 TIGR02232 myxo_disulf_rpt Myxo 72.2 4 8.7E-05 32.0 2.8 36 78-116 2-37 (38)
36 KOG4289|consensus 71.8 7.6 0.00016 49.9 6.4 21 115-139 1817-1838(2531)
37 cd04279 ZnMc_MMP_like_1 Zinc-d 70.3 1.3 2.7E-05 42.3 -0.3 25 42-71 108-132 (156)
38 PF12388 Peptidase_M57: Dual-a 69.3 1 2.3E-05 46.7 -1.2 16 41-56 136-151 (211)
39 cd04278 ZnMc_MMP Zinc-dependen 68.2 1.7 3.6E-05 41.7 -0.0 24 42-71 111-134 (157)
40 cd04277 ZnMc_serralysin_like Z 65.6 1 2.2E-05 44.2 -2.1 16 41-56 116-131 (186)
41 cd04275 ZnMc_pappalysin_like Z 62.4 2.3 4.9E-05 44.3 -0.3 18 39-56 138-155 (225)
42 PF05572 Peptidase_M43: Pregna 58.6 0.86 1.9E-05 44.6 -3.9 17 39-55 70-86 (154)
43 cd04276 ZnMc_MMP_like_2 Zinc-d 49.9 2.8 6E-05 42.9 -2.1 16 41-56 119-134 (197)
44 PF10462 Peptidase_M66: Peptid 49.5 2.7 5.8E-05 45.9 -2.4 14 41-54 196-209 (305)
45 TIGR03296 M6dom_TIGR03296 M6 f 48.9 5.9 0.00013 42.2 0.1 14 41-54 168-181 (286)
46 PF02031 Peptidase_M7: Strepto 46.8 2.2 4.8E-05 41.6 -3.1 18 42-59 81-99 (132)
47 cd04327 ZnMc_MMP_like_3 Zinc-d 46.4 3 6.5E-05 41.8 -2.4 16 41-56 95-110 (198)
48 KOG1924|consensus 43.8 79 0.0017 39.1 8.1 15 487-501 502-516 (1102)
49 smart00051 DSL delta serrate l 42.1 21 0.00046 30.5 2.4 24 19-42 40-63 (63)
50 cd04280 ZnMc_astacin_like Zinc 36.7 6.2 0.00013 39.2 -1.9 16 41-56 77-92 (180)
51 PF13948 DUF4215: Domain of un 33.3 25 0.00055 28.3 1.4 19 77-95 18-36 (47)
52 cd04283 ZnMc_hatching_enzyme Z 32.0 6.9 0.00015 39.6 -2.4 16 41-56 80-95 (182)
53 KOG1219|consensus 31.9 66 0.0014 44.2 5.3 35 13-47 3865-3904(4289)
54 PF08116 Toxin_29: PhTx neurot 31.8 13 0.00028 28.0 -0.4 27 109-137 3-30 (31)
55 cd04281 ZnMc_BMP1_TLD Zinc-dep 31.5 7.7 0.00017 39.8 -2.2 16 41-56 90-105 (200)
56 smart00608 ACR ADAM Cysteine-R 30.2 31 0.00067 33.5 1.7 23 160-183 114-136 (137)
57 cd04282 ZnMc_meprin Zinc-depen 25.0 13 0.00027 39.2 -2.1 16 41-56 123-138 (230)
58 smart00051 DSL delta serrate l 22.9 91 0.002 26.7 3.1 20 114-137 43-63 (63)
59 smart00209 TSP1 Thrombospondin 22.8 59 0.0013 25.2 1.8 45 186-233 8-52 (53)
60 PF01400 Astacin: Astacin (Pep 22.5 7.3 0.00016 39.1 -4.2 16 41-56 82-97 (191)
61 PF12661 hEGF: Human growth fa 22.1 37 0.0008 21.1 0.4 13 30-42 1-13 (13)
62 KOG1565|consensus 22.0 34 0.00073 39.6 0.4 34 42-85 215-248 (469)
63 PHA03247 large tegument protei 21.7 5.5E+02 0.012 36.4 10.7 18 350-367 2881-2898(3151)
64 COG3590 PepO Predicted metallo 21.5 49 0.0011 39.5 1.5 24 34-57 483-509 (654)
65 COG3824 Predicted Zn-dependent 20.6 30 0.00065 33.9 -0.3 15 42-56 113-127 (136)
No 1
>KOG3607|consensus
Probab=100.00 E-value=6e-49 Score=446.74 Aligned_cols=254 Identities=40% Similarity=0.848 Sum_probs=222.2
Q ss_pred CCCCCCcccCCCCeee------cCCCCCCCCCCCCCcCCCCcCCCCCcccC-CCCccccCCC------------------
Q psy1605 18 NCHDQGVCNSRGHCHC------HPGFAPPYCEYPGGHNLGLEHDTTECTCP-SDRCIMAPSS------------------ 72 (718)
Q Consensus 18 ~Cn~~GVCn~~gsC~C------d~GwaG~~CAHELGHNfGm~HDg~~C~C~-~g~CIMs~~s------------------ 72 (718)
....+|||+...+..+ +..+.+.++||||||+|||.||...|.|. .+.|||....
T Consensus 297 ~a~~~~mCs~~~s~gv~~~~~~~~~~~a~v~AhelgH~lGm~hD~~~c~C~~~~~CiM~~~~~~~~~~~FS~CS~~~~~~ 376 (716)
T KOG3607|consen 297 LAYFGGMCSPGHSGGVNKFHSDILLAFAVVLAHELGHNLGMIHDESSCSCPSSGLCIMPEETGFYIPKKFSNCSYQDFES 376 (716)
T ss_pred eeecccccCcccccceeecCcccchhHHHHHHHHHHhhcCcccccccccCCCCCccccccccCcCcccccccchHHHHHH
Confidence 4678899998667765 23445677899999999999999999996 7789994322
Q ss_pred -----------------ccccCCccCCceeecCCCccCCCcccccCcCCCCccCcCCCCcccCCCCCCCCCCCCCCCCCC
Q psy1605 73 -----------------RLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGR 135 (718)
Q Consensus 73 -----------------~lf~~s~CGNgiVE~GEECDCG~~eeC~d~CCd~~tCkLk~GAqCsnG~CC~~~~Cqf~~sGt 135 (718)
..+..+.|||++||.|||||||..++|.+.||+..+|+|++|++|++|.||. +|+|+++|+
T Consensus 377 ~~~~~~~~cl~n~p~p~~~~~~~~CGNg~vE~gEECDCG~~~eC~~~cC~~~tCkL~pga~Ca~G~CC~--~C~~~p~G~ 454 (716)
T KOG3607|consen 377 FLLKGGGSCLLNLPSPEKIFSGPVCGNGVVEEGEECDCGTPEECSNLCCCASTCKLKPGAQCALGLCCK--DCKFLPAGT 454 (716)
T ss_pred HHhcCCcceEecCCCcccccCCCccCCcccccCCcCCCCChHHcCccccccccccccCCCCCCCCCchh--ccccccCcc
Confidence 1235689999999999999999999999999999999999999999999997 899999999
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCCccccCCccccCCccceeCceeccccccccccccccCcCCchhhhh-cccCCCCCC
Q psy1605 136 QCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLWGPSASSSDKRCFD-LNTSGNRHG 214 (718)
Q Consensus 136 vCR~a~~eCDlpEyCnG~S~~CP~D~~~~DGTpC~ng~G~Cy~G~C~t~d~QCs~lwG~ga~~A~~~Cye-~N~~GdrfG 214 (718)
+||.+.++||++|||+|.|..||.|.|++||++|..+++|||+|.|.+++.||+.+||.+++.|+..||+ +|+.|++||
T Consensus 455 ~CR~~~~eCDlpE~C~G~S~~Cp~d~~~~dG~~C~~~~g~Cy~G~C~t~~~QC~~i~g~~a~~a~~~Cy~~vn~~gd~~G 534 (716)
T KOG3607|consen 455 VCRQAKNECDLPEYCNGTSSQCPPDLYVQDGIPCQGGQGYCYDGRCHTRDRQCQKIWGPGARAAPKYCYEKVNTPGDRFG 534 (716)
T ss_pred eecccCCccccccccCCCCCCCCCCceeECCEecCCCcceecCCCCCCHHHHHHHHhCCCcccCchhhhhhccCCCCCCc
Confidence 9999999999999999999999999999999999988999999999999999999999999999999998 899999999
Q ss_pred CCCCCCCCCccccCCCCC--CCCccccCCCcccCCCCcccc---------cccC------C-ceeeccCCCCCCccce
Q psy1605 215 NCGYYKPNMTYAKCEEDK--CNSNALTGHKVAKSTQNHSNS---------TSGG------R-GQRLLSSGEGQNYNLL 274 (718)
Q Consensus 215 nCG~~~~~~~Yv~C~~~D--CGrlQC~~~~~~P~~~~~~t~---------~sgG------~-~~rc~~~~~~~~~~~~ 274 (718)
|||.+ ..++|++|.+.| ||++||++....|....+.+. +.++ . -.--|.+|+-|+++.+
T Consensus 535 nCg~~-~~~~~~~c~~~d~~CG~l~C~~~~~~P~~~~~~~~~~~~~~~~~C~~~~~~~~~~~D~g~V~dGt~Cg~~~v 611 (716)
T KOG3607|consen 535 NCGQD-RNGTYIKCEIRDVLCGKLQCQNGMTIPILGEHVTEIASTIQDLTCWGTHYHLGMDVDLGLVKDGTSCGPGMI 611 (716)
T ss_pred ccccc-CCCCccccccCCcccceEEEecCccccccccccceeecccccccccceeeccCCCCCcceecCCCccCCCce
Confidence 99986 467999999999 999999999999988876662 1121 1 1235667777888765
No 2
>KOG3658|consensus
Probab=99.95 E-value=2.1e-28 Score=272.25 Aligned_cols=150 Identities=41% Similarity=0.870 Sum_probs=133.5
Q ss_pred CCCCCCCcCCCCcCCCC-CcccC---CCCccccCCC----------------------------ccc---cCCccCCcee
Q psy1605 41 YCEYPGGHNLGLEHDTT-ECTCP---SDRCIMAPSS----------------------------RLF---DSPVCGNGFV 85 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg~-~C~C~---~g~CIMs~~s----------------------------~lf---~~s~CGNgiV 85 (718)
+.|||+|||||..||.. +|..+ +|.|||++.+ .+| ..++|||++|
T Consensus 395 t~AHEiGHNfGSpHDp~~ECsPg~~~~GnyiM~a~AtSGd~~NN~kFSpCS~ksI~~VL~~k~~~CFqE~~~sfCGN~iV 474 (764)
T KOG3658|consen 395 TLAHEIGHNFGSPHDPDIECSPGESQGGNYIMYAYATSGDKPNNKKFSPCSLKSISKVLESKKRNCFQERESSFCGNGIV 474 (764)
T ss_pred eehhhhccccCCCCCCCCccCCCCCCCCcEEEEEecccCcCccCcccCcchHHHHHHHHHHhhhhhccCccccccCCccc
Confidence 46999999999999987 89875 4799999977 123 4589999999
Q ss_pred ecCCCccCCCcccccCcCCCC------ccCcCCCCcccC--CCCCCCCCCCCCCCCCCCccCCC-CCCCCCCCCCCCCCC
Q psy1605 86 EDGEECDCGLEDSCKNACCNA------TTCMLNVNATCA--TGSCCNLETCQPHTAGRQCRAAD-RECDLPEFCTGDSEF 156 (718)
Q Consensus 86 E~GEECDCG~~eeC~d~CCd~------~tCkLk~GAqCs--nG~CC~~~~Cqf~~sGtvCR~a~-~eCDlpEyCnG~S~~ 156 (718)
|.|||||||+.++|.+.||++ ..|+|++|++|+ +|+||.. +|+|...+..||.+. .+|.-..+|+|.+++
T Consensus 475 E~GEECDcG~~~~~~D~CC~p~~~~~~k~C~lk~gaqCSpsqgpCC~~-~Cqf~~~~~kc~~~d~~~C~~~s~CnG~~ae 553 (764)
T KOG3658|consen 475 EPGEECDCGFSTDCKDSCCDPQPNLDEKPCTLKPGAQCSPSQGPCCTP-NCQFHTSGEKCREADEATCKGESTCNGFSAE 553 (764)
T ss_pred cCCcccCcccccccCCcccCCCCCCCCCCceeCCCCccCCCCCCccCC-cceeecccCeeeccccccCcCcccccCCccC
Confidence 999999999999999999973 589999999998 8999985 999999999999765 499999999999999
Q ss_pred CCCCccccCCccccCCccceeCceecccccccccccccc
Q psy1605 157 CPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLWGPS 195 (718)
Q Consensus 157 CP~D~~~~DGTpC~ng~G~Cy~G~C~t~d~QCs~lwG~g 195 (718)
||....+.|||.|+ .++.|++|+|... |...||..
T Consensus 554 CP~s~~~~d~t~C~-~~~~C~~G~C~gs---~c~~~gle 588 (764)
T KOG3658|consen 554 CPPSPPKPDGTVCN-ETGVCINGKCIGS---CCLMQGLE 588 (764)
T ss_pred CcCCCCCCCCCccc-ccceEeCCcCccH---HHHhhCcc
Confidence 99999999999998 7899999999875 66778874
No 3
>PF08516 ADAM_CR: ADAM cysteine-rich; InterPro: IPR006586 An ADAM is a transmembrane protein that contains a disintegrin and metalloprotease domain (MEROPS peptidase family M12B). All members of the ADAM family display a common domain organisation - a pro-domain, the metalloprotease, disintigrin, cysteine-rich, epidermal-growth factor like, and transmembrane domains and a C-terminal cytoplasmic tail. They possess four potential functions: proteolysis, cell adhesion, cell fusion, and cell signalling. ADAMs are membrane-anchored proteases that proteolytically modify cell surface and extracellular matrix (ECM) in order to alter cell behaviour. They are responsible for the proteolytic cleavage of transmembrane proteins and release of their extracellular domain [, ]. The ADAM cysteine-rich domain is not found in plant, archaeal, bacterial or viral proteins. The cysteine-rich domain complements the binding capacity of the disintegrin domain, and perhaps imparts specificity to disintegrin domain-mediated interactions. It has been shown that the cysteine-rich domain of ADAM13 regulates the protein's metalloprotease activity []. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2DW2_A 2DW0_B 2DW1_A 3G5C_B 2ERQ_B 2ERO_A 2ERP_B 3K7L_A 2E3X_A 3K7N_A.
Probab=99.79 E-value=1.4e-20 Score=173.51 Aligned_cols=99 Identities=34% Similarity=0.783 Sum_probs=78.3
Q ss_pred CCccccCCccceeCceeccccccccccccccCcCCchhhhh-cccCCCCCCCCCCCCCCCccccCCCCC--CCCccccCC
Q psy1605 165 DGETCKGGEAFCYEGSCRTHSDQCLLLWGPSASSSDKRCFD-LNTSGNRHGNCGYYKPNMTYAKCEEDK--CNSNALTGH 241 (718)
Q Consensus 165 DGTpC~ng~G~Cy~G~C~t~d~QCs~lwG~ga~~A~~~Cye-~N~~GdrfGnCG~~~~~~~Yv~C~~~D--CGrlQC~~~ 241 (718)
||++|.++++|||+|+|.+++.||+.|||.+++.|++.||+ +|++|++|||||.. +..|++|..+| ||+|||++.
T Consensus 1 nG~pC~~~~~yCy~G~C~t~~~QC~~lwG~~a~~A~~~Cy~~~N~~gd~~GnCg~~--~~~~~~C~~~d~~CGkL~C~~~ 78 (117)
T PF08516_consen 1 NGTPCSNGQGYCYNGRCPTRDQQCQELWGPGARVAPDSCYEEVNTKGDRFGNCGRD--NGTYIPCEPEDVLCGKLQCTGG 78 (117)
T ss_dssp TT-EETTTTEEEBTTBEE-HHHHHHHHH-TTEEE--GGGGGGGGGSTSSSS-SEEE--TTEEE---TTGGGGSB-EEEET
T ss_pred CCcccCCCCeEEECCcCCCHhHHHHHHhCCCccccchhHHHHHhcCCCCCCcCCee--CCEECCCchhCccceEEEEeCC
Confidence 79999988899999999999999999999999999999996 89999999999975 56999999999 999999999
Q ss_pred CcccCCCCcccc-cccCCceeeccC
Q psy1605 242 KVAKSTQNHSNS-TSGGRGQRLLSS 265 (718)
Q Consensus 242 ~~~P~~~~~~t~-~sgG~~~rc~~~ 265 (718)
...|...++.+. ....+++.|.+-
T Consensus 79 ~~~p~~~~~~~~~~~~~~~~~C~~~ 103 (117)
T PF08516_consen 79 NEIPLLGEHATVIYTNVGGTKCWGA 103 (117)
T ss_dssp STTSSCSCEES--EEEEEEEEEEE-
T ss_pred CcCCccCCCceEEEEccCCCEEEeE
Confidence 999998887663 333477888763
No 4
>smart00608 ACR ADAM Cysteine-Rich Domain.
Probab=99.79 E-value=8.4e-20 Score=172.38 Aligned_cols=98 Identities=35% Similarity=0.724 Sum_probs=86.5
Q ss_pred CCccccCCccceeCceeccccccccccccccCcCCchhhhh-cccCCCCCCCCCCCCCCCccccCCCCC--CCCccccCC
Q psy1605 165 DGETCKGGEAFCYEGSCRTHSDQCLLLWGPSASSSDKRCFD-LNTSGNRHGNCGYYKPNMTYAKCEEDK--CNSNALTGH 241 (718)
Q Consensus 165 DGTpC~ng~G~Cy~G~C~t~d~QCs~lwG~ga~~A~~~Cye-~N~~GdrfGnCG~~~~~~~Yv~C~~~D--CGrlQC~~~ 241 (718)
||++|.++++|||+|+|.+++.||+.|||.+|+.|++.||+ +|++|++|||||++. ..|++|..+| ||+|||...
T Consensus 1 dG~pC~~~~~yCy~G~C~t~~~QC~~lfG~~a~~A~~~Cy~~~N~~Gd~~GnCg~~~--~~~~~C~~~dv~CGkL~C~~~ 78 (137)
T smart00608 1 DGTPCDNGQGYCYNGRCPTRDNQCQALFGPGAKVAPDSCYEELNTKGDRFGNCGREN--STYIPCAPEDVKCGKLQCTNV 78 (137)
T ss_pred CCcCcCCCCEEeECCCcCCcchhhHhhhCCCCcccChhHhHHHhhCCCceeecCCCC--CcccCCChhccceeeEEecCC
Confidence 79999988899999999999999999999999999999998 899999999999854 6799999999 999999999
Q ss_pred CcccCCCCcccc-cccCCceeecc
Q psy1605 242 KVAKSTQNHSNS-TSGGRGQRLLS 264 (718)
Q Consensus 242 ~~~P~~~~~~t~-~sgG~~~rc~~ 264 (718)
...|....+.+. .+..+++.|.+
T Consensus 79 ~~~p~~~~~~~~~~~~~~~~~C~~ 102 (137)
T smart00608 79 SSLPLLGEHATVIYSNIGGLVCWS 102 (137)
T ss_pred CccccccCcceEEEeccCCCEEEE
Confidence 988888766663 44456666654
No 5
>smart00050 DISIN Homologues of snake disintegrins. Snake disintegrins inhibit the binding of ligands to integrin receptors. They contain a 'RGD' sequence, identical to the recognition site of many adhesion proteins. Molecules containing both disintegrin and metalloprotease domains are known as ADAMs.
Probab=99.74 E-value=1.4e-18 Score=149.94 Aligned_cols=75 Identities=52% Similarity=1.249 Sum_probs=71.2
Q ss_pred ecCCCccCCCcccccCcCCCCccCcCCCCcccCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCcc
Q psy1605 86 EDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVF 162 (718)
Q Consensus 86 E~GEECDCG~~eeC~d~CCd~~tCkLk~GAqCsnG~CC~~~~Cqf~~sGtvCR~a~~eCDlpEyCnG~S~~CP~D~~ 162 (718)
|.|||||||+.++|.++||++.+|+|+.|++|++|+||+ +|+|..+|++||.+.++||++|||+|.|..||.+.|
T Consensus 1 E~gEeCDCG~~~~~~d~CC~~~tC~l~~ga~Cs~G~CC~--~C~~~~~g~~CR~~~~~Cd~~e~C~G~s~~CP~~~~ 75 (75)
T smart00050 1 EEGEECDCGSPKECTNPCCDPATCKLKPGAQCASGPCCD--NCKFKPAGTLCRPSVDECDLPEYCNGTSADCPPDVY 75 (75)
T ss_pred CcCcccCCCChhhcCCCCcCCCcceecCCCeecCCCCCC--cceEccCCCEecCccCCCCCccccCCCCCcCcCCCC
Confidence 579999999987799999998899999999999999998 899999999999999999999999999999999875
No 6
>PF00200 Disintegrin: Disintegrin; InterPro: IPR001762 Disintegrins are a family of small proteins from viper venoms that function as potent inhibitors of both platelet aggregation and integrin-dependent cell adhesion [, ]. Integrin receptors are involved in cell-cell and cell-extracellular matrix interactions, serving as the final common pathway leading to aggregation via formation of platelet-platelet bridges, which are essential in thrombosis and haemostasis. Disintegrins contain an RGD (Arg-Gly-Asp) or KGD (Lys-Gly-Asp) sequence motif that binds specifically to integrin IIb-IIIa receptors on the platelet surface, thereby blocking the binding of fibrinogen to the receptor-glycoprotein complex of activated platelets. Disintegrins act as receptor antagonists, inhibiting aggregation induced by ADP, thrombin, platelet-activating factor and collagen []. The role of disintegrin in preventing blood coagulation renders it of medical interest, particularly with regard to its use as an anti-coagulant []. Disintegrins from different snake species have been characterised: albolabrin, applagin, barbourin, batroxostatin, bitistatin, obtustatin [], schistatin [], echistatin [], elegantin, eristicophin, flavoridin [], halysin, kistrin, tergeminin, salmosin [] and triflavin. Disintegrin-like proteins are found in various species ranging from slime mold to humans. Some other proteins known to contain a disintegrin domain are: Some snake venom zinc metalloproteinases [] consist of an N-terminal catalytic domain fused to a disintegrin domain. Such is the case for trimerelysin I (HR1B), atrolysin-e (Ht-e) and trigramin. It has been suggested that these proteinases are able to cleave themselves from the disintegrin domains and that the latter may arise from such a post-translational processing. The beta-subunit of guinea pig sperm surface protein PH30 []. PH30 is a protein involved in sperm-egg fusion. The beta subunit contains a disintegrin at the N-terminal extremity. Mammalian epididymial apical protein 1 (EAP I) []. EAP I is associated with the sperm membrane and may play a role in sperm maturation. Structurally, EAP I consists of an N-terminal domain, followed by a zinc metalloproteinase domain, a disintegrin domain, and a large C-terminal domain that contains a transmembrane region. ; PDB: 1L3X_A 3C05_D 3K7N_A 3K7L_A 2ECH_A 1RO3_A 2PJF_A 2PJG_A 1Q7J_A 1Q7I_A ....
Probab=99.71 E-value=1.8e-18 Score=149.34 Aligned_cols=76 Identities=55% Similarity=1.292 Sum_probs=69.5
Q ss_pred ecCCCccCCCcccccCcCCCCccCcCCCCcccCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy1605 86 EDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFK 163 (718)
Q Consensus 86 E~GEECDCG~~eeC~d~CCd~~tCkLk~GAqCsnG~CC~~~~Cqf~~sGtvCR~a~~eCDlpEyCnG~S~~CP~D~~~ 163 (718)
|.|||||||+..+|.++||++.+|+|++|++|++|+||. +|+|...|++||.+.++||+++||+|.|.+||.|.|+
T Consensus 1 E~gEeCDCG~~~~C~~~CC~~~~C~l~~ga~C~~g~CC~--~C~~~~~g~~Cr~~~~~Cd~~e~C~G~s~~CP~d~~k 76 (76)
T PF00200_consen 1 EEGEECDCGSPEECNDPCCDATTCKLKPGAQCSNGPCCN--NCQFKPSGTVCRPATNECDLPEYCNGSSAECPPDVYK 76 (76)
T ss_dssp -TTTS-STSSTTTHTCTTEETTTTEESTTSSTSSSTTEE--TTEESSTTEEEEECSSTTSEEEEECSSSSSS-SSTT-
T ss_pred CcCccCCCCChhhccCCCcCccccccccccccccCcccC--cccccccccccCcccCcCCCCCcCCCcCCcCcCCCCC
Confidence 679999999999999999998899999999999999998 8999999999999999999999999999999999875
No 7
>KOG3538|consensus
Probab=99.21 E-value=3.7e-11 Score=141.18 Aligned_cols=215 Identities=19% Similarity=0.408 Sum_probs=146.5
Q ss_pred CCCCCCcccCCCCeee--cCCC-CCCCCCCCCCcCCCCcCCCCCcccCCCCccccCCC----ccccCCccCCc----eee
Q psy1605 18 NCHDQGVCNSRGHCHC--HPGF-APPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSS----RLFDSPVCGNG----FVE 86 (718)
Q Consensus 18 ~Cn~~GVCn~~gsC~C--d~Gw-aG~~CAHELGHNfGm~HDg~~C~C~~g~CIMs~~s----~lf~~s~CGNg----iVE 86 (718)
.....|||...++|.. +.++ .+.++|||+||+|||.||+..=.|.....||++.. ..+.|+.|+.. |++
T Consensus 294 ~A~v~gmC~~~~sC~i~e~~gl~~aftiahE~GH~~gm~hd~~~~~C~~~~~im~~~~~~~~~~~~WS~CS~~~~t~fl~ 373 (845)
T KOG3538|consen 294 VAPVGGMCSPSRSCSINEDTGLPSAFTIAHELGHNFGMEHDGRGNSCGPTFHVMSSDTCGGNHELTWSECSREYLTRFLD 373 (845)
T ss_pred ceeecceeCCccceeeecCCCCccceeeeeccccccCcccCCcCCCCCCcccccCcccccCCCCccCCcchHHHHHHHhc
Confidence 5788999999999977 4444 46789999999999999975312544448998876 34569999764 666
Q ss_pred cCCC-ccCCCcccccCcCCC---CccCcCCCCcccCCCCCCCCCCCCCCCCCCCccCCC--CCCCCCCCCCCCCC--CCC
Q psy1605 87 DGEE-CDCGLEDSCKNACCN---ATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAAD--RECDLPEFCTGDSE--FCP 158 (718)
Q Consensus 87 ~GEE-CDCG~~eeC~d~CCd---~~tCkLk~GAqCsnG~CC~~~~Cqf~~sGtvCR~a~--~eCDlpEyCnG~S~--~CP 158 (718)
.++. |.-.... ...-.- .+.=.+.. +.+| .-+|+..-..|.... +.|. ..||.+... .|.
T Consensus 374 ~~~~~Cl~d~p~--~~~~~~p~~lPg~~y~~-----~~qC----~~~fg~~~~~c~~~~~~~~c~-~lWC~~~~g~~~C~ 441 (845)
T KOG3538|consen 374 DGEGNCLSDQPF--SALPKLPSQLPGQTYDA-----DEQC----EFQFGPKSKECPDMRAPDPCR-ELWCHTDGGSSSCS 441 (845)
T ss_pred cCccceeecCCc--cccCCCCccCCccccCC-----CCcc----ccccCCcceeccccCccchhh-hhcccCCCCCCccc
Confidence 5432 3222110 110010 01112222 3444 334444444444322 2443 579986544 699
Q ss_pred CCc-cccCCccccCCccceeCceeccccc-------------------cccccccccCcCCchhhhh-cccCCCCCCCCC
Q psy1605 159 SDV-FKMDGETCKGGEAFCYEGSCRTHSD-------------------QCLLLWGPSASSSDKRCFD-LNTSGNRHGNCG 217 (718)
Q Consensus 159 ~D~-~~~DGTpC~ng~G~Cy~G~C~t~d~-------------------QCs~lwG~ga~~A~~~Cye-~N~~GdrfGnCG 217 (718)
... +..||+.|.....+|..|.|+.... +|++.+|.|++.+.+.|.+ ...+|++ +|-
T Consensus 442 t~~~p~~~gt~Cg~~~~~c~~g~c~~~~~~~~~~~~~dg~w~~w~~ws~Cs~TCg~Gv~~~~r~C~np~p~~gg~--~C~ 519 (845)
T KOG3538|consen 442 TKHLPAADGTECGEFGKWCRKGRCTPRTPRAPPCIPFDGGWSSWSPWSPCSRTCGGGVQTRSRLCNNPRPANGGK--YCP 519 (845)
T ss_pred cCcCCcccCCCcCCcCCcccCCcccCcccccCCCCCCCCCccccCCCCccccccCCceeeeeEECCCCCCCCCCc--cCC
Confidence 986 8899999984147999999998663 4999999999999999998 7888887 786
Q ss_pred CCCCCCccccCCCCCCCC--------ccccCCCcccCCC
Q psy1605 218 YYKPNMTYAKCEEDKCNS--------NALTGHKVAKSTQ 248 (718)
Q Consensus 218 ~~~~~~~Yv~C~~~DCGr--------lQC~~~~~~P~~~ 248 (718)
. ....|+.|+..+|.. .||+.++...+..
T Consensus 520 g--~~~~~~~c~~~~C~~~~~~~fr~~qc~~~~~~~~~~ 556 (845)
T KOG3538|consen 520 G--ERLRYRSCNTEPCPPPESESFREQQCSAFNGQELEP 556 (845)
T ss_pred C--CCceeeecCCCCCCCCCccCHHHHhhhhhccccccC
Confidence 5 378999999999975 5688777766665
No 8
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=98.62 E-value=1.5e-08 Score=100.38 Aligned_cols=66 Identities=24% Similarity=0.446 Sum_probs=52.2
Q ss_pred CCCCCCcccCCCCeee--cCCC-CCCCCCCCCCcCCCCcCCCCCcccCCC---CccccCCC----ccccCCccCCc
Q psy1605 18 NCHDQGVCNSRGHCHC--HPGF-APPYCEYPGGHNLGLEHDTTECTCPSD---RCIMAPSS----RLFDSPVCGNG 83 (718)
Q Consensus 18 ~Cn~~GVCn~~gsC~C--d~Gw-aG~~CAHELGHNfGm~HDg~~C~C~~g---~CIMs~~s----~lf~~s~CGNg 83 (718)
.+..+|+|+...+|.. +.++ .+.++||||||+|||.||+..|.|+.. .|||++.. ..+.|+.|+..
T Consensus 117 ~A~~ggiC~~~~s~~i~~~~~~~~a~~~aHElGH~LG~~HD~~~~~C~~~~~~~~IM~~~~~~~~~~~~fS~CS~~ 192 (207)
T cd04273 117 LAPVGGMCSPSRSCSINEDTGLSSAFTIAHELGHVLGMPHDGDGNSCGPEGKDGHIMSPTLGANTGPFTWSKCSRR 192 (207)
T ss_pred EeccccCCCCCcceEEEcCCCceeEEeeeeechhhcCCCCCCCCCCCCCCCCCceeecccccCCCCCCCcCHHHHH
Confidence 4788999998788866 3344 466789999999999999988888864 79999875 23468888853
No 9
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=98.51 E-value=1.7e-08 Score=98.40 Aligned_cols=66 Identities=30% Similarity=0.460 Sum_probs=50.7
Q ss_pred CCCCCCcccCCCCeee--cCC----CCCCCCCCCCCcCCCCcCCCCCcccCCCCccccCCC--ccccCCccCCc
Q psy1605 18 NCHDQGVCNSRGHCHC--HPG----FAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSS--RLFDSPVCGNG 83 (718)
Q Consensus 18 ~Cn~~GVCn~~gsC~C--d~G----waG~~CAHELGHNfGm~HDg~~C~C~~g~CIMs~~s--~lf~~s~CGNg 83 (718)
....+|+|+....+.+ +.+ +.+.++||||||+|||.||+..|.|+.+.|||++.. ....|+.|+-.
T Consensus 105 ~A~~g~iC~~~~~~~v~~~~~~~~~~~a~~~AHElGH~lG~~HD~~~c~C~~~~cIM~~~~~~~~~~fS~CS~~ 178 (194)
T cd04269 105 LAYVGGMCSPKYSGGVVQDHSRNLLLFAVTMAHELGHNLGMEHDDGGCTCGRSTCIMAPSPSSLTDAFSNCSYE 178 (194)
T ss_pred eeecCCccCCCcceEEEEeCCcchHHHHHHHHHHHHhhcCCCcCCCCCCCCCCCeEecCCCCCCCCCCChhhHH
Confidence 4677899996566655 222 335678999999999999999999998889999875 23567788743
No 10
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=98.37 E-value=5.4e-08 Score=99.73 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=45.0
Q ss_pred CCCCcccCCCCee--e----cCCC--------------CCCCCCCCCCcCCCCcCCCC--CcccCC---CCccccCCC--
Q psy1605 20 HDQGVCNSRGHCH--C----HPGF--------------APPYCEYPGGHNLGLEHDTT--ECTCPS---DRCIMAPSS-- 72 (718)
Q Consensus 20 n~~GVCn~~gsC~--C----d~Gw--------------aG~~CAHELGHNfGm~HDg~--~C~C~~---g~CIMs~~s-- 72 (718)
..+|+|.....|. . +.|+ ...++||||||||||.||+. .|.|.. +.|||++.+
T Consensus 129 ~~gGIC~~~~s~~~~~~~~~n~gl~t~~~~~~~~~~~~~a~t~AHElGHnlGm~HD~~~~~C~~~~~~~~~cIM~~~~~~ 208 (244)
T cd04270 129 SAGGICEKAYYYSNGKKKYLNTGLTTTVNYGKRVPTKESDLVTAHELGHNFGSPHDPDIAECAPGESQGGNYIMYARATS 208 (244)
T ss_pred CCCcccCCcccccCCcceeeecceEeeeccCCccchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCceEecCcccc
Confidence 4578998876761 1 1222 22468999999999999997 577753 489999874
Q ss_pred ----ccccCCccCCc
Q psy1605 73 ----RLFDSPVCGNG 83 (718)
Q Consensus 73 ----~lf~~s~CGNg 83 (718)
..+.++.|+..
T Consensus 209 ~~~~~~~~FS~CS~~ 223 (244)
T cd04270 209 GDKENNKKFSPCSKK 223 (244)
T ss_pred CCCCCCCCCCHhHHH
Confidence 13467888853
No 11
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=98.34 E-value=2.4e-07 Score=94.46 Aligned_cols=66 Identities=26% Similarity=0.453 Sum_probs=44.0
Q ss_pred CCCCCCcccCCCCeeecCC-----C-CC-----CCCCCCCCcCCCCcCCCCC--cc---------cC--------CCCcc
Q psy1605 18 NCHDQGVCNSRGHCHCHPG-----F-AP-----PYCEYPGGHNLGLEHDTTE--CT---------CP--------SDRCI 67 (718)
Q Consensus 18 ~Cn~~GVCn~~gsC~Cd~G-----w-aG-----~~CAHELGHNfGm~HDg~~--C~---------C~--------~g~CI 67 (718)
.+..+|+|+....+..... . .. .++||||||||||.||+.. |. |+ .+.||
T Consensus 114 lA~vg~mC~~~~s~~~~~~~~~~~~~~~~~~~~~t~AHElGHnLGm~HD~~~~~C~~~~~~~~~~Cp~~~~~C~~~~~~I 193 (228)
T cd04271 114 VAWLGQLCRTGASDQGNETVAGTNVVVRTSNEWQVFAHEIGHTFGAVHDCTSGTCSDGSVGSQQCCPLSTSTCDANGQYI 193 (228)
T ss_pred EeeccCCCCCCcCCCccccccccceeecccccceehhhhhhhhcCCCCCCCCCccccccccccccCCCcccccCCCCCEE
Confidence 5788999998655432110 0 11 3789999999999999864 52 32 35799
Q ss_pred ccCCC--ccccCCccCCc
Q psy1605 68 MAPSS--RLFDSPVCGNG 83 (718)
Q Consensus 68 Ms~~s--~lf~~s~CGNg 83 (718)
|++.. ..+.|+.|+-.
T Consensus 194 M~~~~~~~~~~FS~CS~~ 211 (228)
T cd04271 194 MNPSSSSGITEFSPCTIG 211 (228)
T ss_pred eecCcCCCCCccChhhHH
Confidence 99865 23446778754
No 12
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=98.31 E-value=2.8e-08 Score=97.39 Aligned_cols=66 Identities=29% Similarity=0.468 Sum_probs=45.4
Q ss_pred CCCCCCcccCCCCeee--cC----CCCCCCCCCCCCcCCCCcCCCC-Cccc-CCCCccccCCC---ccccCCccCCc
Q psy1605 18 NCHDQGVCNSRGHCHC--HP----GFAPPYCEYPGGHNLGLEHDTT-ECTC-PSDRCIMAPSS---RLFDSPVCGNG 83 (718)
Q Consensus 18 ~Cn~~GVCn~~gsC~C--d~----GwaG~~CAHELGHNfGm~HDg~-~C~C-~~g~CIMs~~s---~lf~~s~CGNg 83 (718)
....+|+|+...+|.+ +. ...+.++||||||+|||.||+. .|.| ....|||++.. .-..|+.|+..
T Consensus 105 ~a~~~~~C~~~~s~~i~~~~~~~~~~~a~~~AHelGH~lGm~HD~~~~C~C~~~~~cIM~~~~~~~~~~~fS~CS~~ 181 (199)
T PF01421_consen 105 LAYVGGMCSPSRSCGIVEDHSRSGLSFAVIIAHELGHNLGMPHDGDNGCKCPRRDGCIMSPSIGPSSSDKFSNCSRR 181 (199)
T ss_dssp EE-TT-TTSTTTSEEEEE-SSSSHHHHHHHHHHHHHHHTT---TTTCTHCSSSSSSSTTSSSSSSSSTSSS-HHHHH
T ss_pred eEeCCCCCCcCCCCcEeeeccchhHHHHHHHHHHHHHhcCCCCCCCCcCCcCCCCCccccccccCCCCCCcCHHHHH
Confidence 3678999999888877 22 1245567999999999999998 8999 67789999854 12357888864
No 13
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=98.27 E-value=4.2e-07 Score=88.42 Aligned_cols=64 Identities=25% Similarity=0.373 Sum_probs=45.6
Q ss_pred CCCCCCcccCCCCeee--cC---CCCCCCCCCCCCcCCCCcCCCCC-c--ccC-CCCccccCCCc---cccCCccC
Q psy1605 18 NCHDQGVCNSRGHCHC--HP---GFAPPYCEYPGGHNLGLEHDTTE-C--TCP-SDRCIMAPSSR---LFDSPVCG 81 (718)
Q Consensus 18 ~Cn~~GVCn~~gsC~C--d~---GwaG~~CAHELGHNfGm~HDg~~-C--~C~-~g~CIMs~~s~---lf~~s~CG 81 (718)
.+...++|.....+.+ +. .+.+.++|||+||+|||.||+.. | .|. .+.|||++... .+.++.|+
T Consensus 108 ~a~~~~~C~~~~~~~v~~~~~~~~~~~~~~aHElGH~lG~~HD~~~~~~~~c~~~~~~IM~~~~~~~~~~~FS~CS 183 (192)
T cd04267 108 LAYVGSMCNPYSSVGVVEDTGFTLLTALTMAHELGHNLGAEHDGGDELAFECDGGGNYIMAPVDSGLNSYRFSQCS 183 (192)
T ss_pred eecccCCCCCCCCeEEEecCCcceeehhhhhhhHHhhcCCcCCCCCCccccCCCCCCeEEcccccCCCCCccChhh
Confidence 3567788987667655 22 34567899999999999999875 3 454 56799987642 24466666
No 14
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=97.98 E-value=1.2e-06 Score=87.90 Aligned_cols=65 Identities=23% Similarity=0.349 Sum_probs=46.1
Q ss_pred CCCCCCcccCCCCeee--cC-C--CCCCCCCCCCCcCCCCcCCCCC-c----------ccCC-CCccccCCC---ccccC
Q psy1605 18 NCHDQGVCNSRGHCHC--HP-G--FAPPYCEYPGGHNLGLEHDTTE-C----------TCPS-DRCIMAPSS---RLFDS 77 (718)
Q Consensus 18 ~Cn~~GVCn~~gsC~C--d~-G--waG~~CAHELGHNfGm~HDg~~-C----------~C~~-g~CIMs~~s---~lf~~ 77 (718)
.+..+|+|+. ..+.. +. + ..+.++||||||+|||.||+.. | .|+. ..|||++.. ..+.|
T Consensus 121 ~A~~g~~C~~-~~~~~~~d~~~~~~~~~~~AHElGH~lG~~HD~~~~~~~~~~~~~~~~C~~~~~~IM~~~~~~~~~~~f 199 (220)
T cd04272 121 YAYVGGACTE-NRVAMGEDTPGSYYGVYTMTHELAHLLGAPHDGSPPPSWVKGHPGSLDCPWDDGYIMSYVVNGERQYRF 199 (220)
T ss_pred eEeecCccCC-CceeEeecCCCCcccHHHHHHHHHHHhCCCCCCCCCCccCCCCCccCcCCCCCCeEEeeccCCCCCCcc
Confidence 4678999985 55544 22 2 3456789999999999999864 4 4763 469999753 34568
Q ss_pred CccCCc
Q psy1605 78 PVCGNG 83 (718)
Q Consensus 78 s~CGNg 83 (718)
+.|+..
T Consensus 200 S~CS~~ 205 (220)
T cd04272 200 SQCSQR 205 (220)
T ss_pred CcchHH
Confidence 888854
No 15
>KOG1225|consensus
Probab=97.94 E-value=2e-05 Score=89.44 Aligned_cols=91 Identities=31% Similarity=0.751 Sum_probs=66.9
Q ss_pred CCCCCCCCCCCCcccCCCCeeecCCCCCCCCCCCCCcCCCCcCCCCCcccCCCCccccCCCccccCCccCCceeecCCCc
Q psy1605 12 VADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFDSPVCGNGFVEDGEEC 91 (718)
Q Consensus 12 ~~~Cp~~Cn~~GVCn~~gsC~Cd~GwaG~~CAHELGHNfGm~HDg~~C~C~~g~CIMs~~s~lf~~s~CGNgiVE~GEEC 91 (718)
...|+..|+.+|.|+. ++|+|..||.|.+|.-. .| +..|+++++....+|
T Consensus 249 ~~~C~~~c~~~g~c~~-G~CIC~~Gf~G~dC~e~------------~C-----------------p~~cs~~g~~~~g~C 298 (525)
T KOG1225|consen 249 TIYCPGGCTGRGQCVE-GRCICPPGFTGDDCDEL------------VC-----------------PVDCSGGGVCVDGEC 298 (525)
T ss_pred cccCCCCCcccceEeC-CeEeCCCCCcCCCCCcc------------cC-----------------CcccCCCceecCCEe
Confidence 4557777888888877 88888888887666321 11 234777777777788
Q ss_pred cCCC---cccccCcCCCCccCcCCCCcccCCCCCCCCCCCCCCCCCCCccC
Q psy1605 92 DCGL---EDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRA 139 (718)
Q Consensus 92 DCG~---~eeC~d~CCd~~tCkLk~GAqCsnG~CC~~~~Cqf~~sGtvCR~ 139 (718)
.|.. +++|.-.=| +..|+-+ +.|.+|.| .|..+|.|..|..
T Consensus 299 iC~~g~~G~dCs~~~c-padC~g~--G~Ci~G~C----~C~~Gy~G~~C~~ 342 (525)
T KOG1225|consen 299 ICNPGYSGKDCSIRRC-PADCSGH--GKCIDGEC----LCDEGYTGELCIQ 342 (525)
T ss_pred ecCCCccccccccccC-CccCCCC--CcccCCce----EeCCCCcCCcccc
Confidence 8863 567764445 4788887 99999999 8999999999986
No 16
>KOG1226|consensus
Probab=97.03 E-value=0.0015 Score=76.58 Aligned_cols=129 Identities=28% Similarity=0.653 Sum_probs=81.2
Q ss_pred CCCCCCCcccCCCCeeecCCCCCCCCCCCCCcCCCCcCCCCCcccCCCCccccCCCccccCCccCCceeecCCCccCCC-
Q psy1605 17 FNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFDSPVCGNGFVEDGEECDCGL- 95 (718)
Q Consensus 17 ~~Cn~~GVCn~~gsC~Cd~GwaG~~CAHELGHNfGm~HDg~~C~C~~g~CIMs~~s~lf~~s~CGNgiVE~GEECDCG~- 95 (718)
..|+++|.++= |.|.|+.||.|..|.|-.+-..-..- ...|.-. .+.++|+++..+.-++|.|-.
T Consensus 467 ~~C~g~G~~~C-G~C~C~~G~~G~~CEC~~~~~ss~~~-~~~Cr~~------------~~~~vCSgrG~C~CGqC~C~~~ 532 (783)
T KOG1226|consen 467 ALCHGNGTFVC-GQCRCDEGWLGKKCECSTDELSSSEE-EDKCREN------------SDSPVCSGRGDCVCGQCVCHKP 532 (783)
T ss_pred cccCCCCcEEe-cceecCCCCCCCcccCCccccCcHhH-HhhccCC------------CCCCCcCCCCcEeCCceEecCC
Confidence 36888888887 89999999999988765432211111 1233211 123588888877777777743
Q ss_pred ------cccccCcCCCCccCcCCCCcccC------CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccc
Q psy1605 96 ------EDSCKNACCNATTCMLNVNATCA------TGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFK 163 (718)
Q Consensus 96 ------~eeC~d~CCd~~tCkLk~GAqCs------nG~CC~~~~Cqf~~sGtvCR~a~~eCDlpEyCnG~S~~CP~D~~~ 163 (718)
+..|+ |+.-.|..+.|-.|+ =|+| .|..+|.|..|.- +.....| -.
T Consensus 533 ~~~~i~G~fCE---CDnfsC~r~~g~lC~g~G~C~CG~C----vC~~GwtG~~C~C-----------~~std~C----~~ 590 (783)
T KOG1226|consen 533 DNGKIYGKFCE---CDNFSCERHKGVLCGGHGRCECGRC----VCNPGWTGSACNC-----------PLSTDTC----ES 590 (783)
T ss_pred CCCceeeeeee---ccCcccccccCcccCCCCeEeCCcE----EcCCCCccCCCCC-----------CCCCccc----cC
Confidence 33454 333455555555554 4666 7888998888762 1222223 23
Q ss_pred cCCccccCCccceeCceec
Q psy1605 164 MDGETCKGGEAFCYEGSCR 182 (718)
Q Consensus 164 ~DGTpC~ng~G~Cy~G~C~ 182 (718)
.||..|. ++|.|.-|+|.
T Consensus 591 ~~G~iCS-GrG~C~Cg~C~ 608 (783)
T KOG1226|consen 591 SDGQICS-GRGTCECGRCK 608 (783)
T ss_pred CCCceeC-CCceeeCCceE
Confidence 5788996 78999999993
No 17
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=96.84 E-value=0.0004 Score=65.34 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=34.9
Q ss_pred CCCCCcccCCCCeee--cC----CCCCCCCCCCCCcCCCCcCCCCCcc--------------cCCCCccccCC
Q psy1605 19 CHDQGVCNSRGHCHC--HP----GFAPPYCEYPGGHNLGLEHDTTECT--------------CPSDRCIMAPS 71 (718)
Q Consensus 19 Cn~~GVCn~~gsC~C--d~----GwaG~~CAHELGHNfGm~HDg~~C~--------------C~~g~CIMs~~ 71 (718)
+...++|+....+.. .. .+...+++|||||.|||.||...|. |.+..|||...
T Consensus 71 a~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~HElGH~LGl~H~~~~~~~~~~~~~~~~~~~~~~~~~siM~y~ 143 (167)
T cd00203 71 AYLGRVCDSLRGVGVLQDNQSGTKEGAQTIAHELGHALGFYHDHDRKDRDDYPTIDDTLNAEDDDYYSVMSYT 143 (167)
T ss_pred EecCCccCCCCCcEEEecCCcccccchhhHHHHHHHHhCCCccCcCCCCCCCccccccccCCCCCCCeEeccC
Confidence 355667765444433 11 1345578999999999999987654 33457899765
No 18
>KOG1225|consensus
Probab=96.59 E-value=0.0069 Score=69.35 Aligned_cols=158 Identities=27% Similarity=0.656 Sum_probs=102.7
Q ss_pred CCCCCCCCCCCcccCCCCeeecCCCCCCCCCC-------------CCCcCCCCc-CCCCCcccCCC----CccccCCCcc
Q psy1605 13 ADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEY-------------PGGHNLGLE-HDTTECTCPSD----RCIMAPSSRL 74 (718)
Q Consensus 13 ~~Cp~~Cn~~GVCn~~gsC~Cd~GwaG~~CAH-------------ELGHNfGm~-HDg~~C~C~~g----~CIMs~~s~l 74 (718)
..|+.+|.+||.|.. +.|.+...+.+.++-. +-||+|... -++.-|.|..+ .|. ..
T Consensus 177 ~~~~~~~~~hg~~~~-~~~l~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ic~c~~~~~g~~c~-----~~ 250 (525)
T KOG1225|consen 177 YKCPNDGSGHGRYYF-GNCLSGISASGETCNQLGCNDDCFRTGRCREGRCFCTAGFFDGICECPEGYFGPLCS-----TI 250 (525)
T ss_pred ecCCcCCCCCcccee-cccccccCcchhhhhcccCCccceeccccccCcccccccccCceeecCCceeCCccc-----cc
Confidence 556778899998887 7888877777666622 224555432 23335666543 232 23
Q ss_pred ccCCccCCceeecCCCccCCC---cccccCcCCCCccCcCCCCcccCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC
Q psy1605 75 FDSPVCGNGFVEDGEECDCGL---EDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEFCT 151 (718)
Q Consensus 75 f~~s~CGNgiVE~GEECDCG~---~eeC~d~CCd~~tCkLk~GAqCsnG~CC~~~~Cqf~~sGtvCR~a~~eCDlpEyCn 151 (718)
.....|.+++....+.|.|.. +.+|...-|. ..|. .+..|.+|.| .|.-++.|..|+... | +..|+
T Consensus 251 ~C~~~c~~~g~c~~G~CIC~~Gf~G~dC~e~~Cp-~~cs--~~g~~~~g~C----iC~~g~~G~dCs~~~--c--padC~ 319 (525)
T KOG1225|consen 251 YCPGGCTGRGQCVEGRCICPPGFTGDDCDELVCP-VDCS--GGGVCVDGEC----ICNPGYSGKDCSIRR--C--PADCS 319 (525)
T ss_pred cCCCCCcccceEeCCeEeCCCCCcCCCCCcccCC-cccC--CCceecCCEe----ecCCCcccccccccc--C--CccCC
Confidence 346788888888888888864 5678765564 3474 4499999999 999999999999755 5 67787
Q ss_pred CCC----CCCCCCc-cccCCccccC----CccceeCceeccccccccccc-ccc
Q psy1605 152 GDS----EFCPSDV-FKMDGETCKG----GEAFCYEGSCRTHSDQCLLLW-GPS 195 (718)
Q Consensus 152 G~S----~~CP~D~-~~~DGTpC~n----g~G~Cy~G~C~t~d~QCs~lw-G~g 195 (718)
|+. ..|..+. |. |..|.. +.+.|.+| | +|++.| |..
T Consensus 320 g~G~Ci~G~C~C~~Gy~--G~~C~~~~C~~~g~cv~g-C-----~C~~Gw~G~d 365 (525)
T KOG1225|consen 320 GHGKCIDGECLCDEGYT--GELCIQRACSGGGQCVNG-C-----KCKKGWRGPD 365 (525)
T ss_pred CCCcccCCceEeCCCCc--CCcccccccCCCceeccC-c-----eeccCccCCC
Confidence 764 3444432 22 334432 34556666 5 899999 444
No 19
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=96.17 E-value=0.00055 Score=66.75 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=18.3
Q ss_pred CCCCCCCCCCcCCCCcCCCCC------cc-----cC-CCCccccCC
Q psy1605 38 APPYCEYPGGHNLGLEHDTTE------CT-----CP-SDRCIMAPS 71 (718)
Q Consensus 38 aG~~CAHELGHNfGm~HDg~~------C~-----C~-~g~CIMs~~ 71 (718)
...++||||||+||+.||... |. |+ .+.+||++.
T Consensus 142 ~~~~~AHEiGH~lGa~HD~~~~~~~~~c~~~~~~~~~~~~~IM~y~ 187 (196)
T PF13688_consen 142 GAITFAHEIGHNLGAPHDGDYSSTSSSCPPSSSTCPAGGGYIMSYC 187 (196)
T ss_dssp HHHHHHHHHHHHTT-----SSS---TTTS-----GGGT---TTSSS
T ss_pred eehhhHHhHHHhcCCCCCCCCCCCCCCCCCCccccCCCCCeEEccc
Confidence 344679999999999999752 42 22 468999876
No 20
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=95.19 E-value=0.002 Score=63.17 Aligned_cols=31 Identities=42% Similarity=0.679 Sum_probs=18.0
Q ss_pred CCCCCCCcCCCCcCCCCC-c-----ccC-CCCccccCC
Q psy1605 41 YCEYPGGHNLGLEHDTTE-C-----TCP-SDRCIMAPS 71 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg~~-C-----~C~-~g~CIMs~~ 71 (718)
++||||||.||+.||... | .|+ .+.+||+..
T Consensus 114 ~~aHElGH~lGa~Hd~~~~~~~~~~~~~~sg~~IMsy~ 151 (173)
T PF13574_consen 114 TFAHELGHQLGAPHDFDNGCNPGSPTCPGSGGYIMSYA 151 (173)
T ss_dssp HHHHHHHHHHT---SSSS----SS--T-STTT-TT-SS
T ss_pred eehhhhHhhcCCCCCCCCCCCCCCCcCCCCCCEEEeeC
Confidence 479999999999999864 2 233 367999754
No 21
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=93.76 E-value=0.0057 Score=55.37 Aligned_cols=18 Identities=44% Similarity=0.569 Sum_probs=11.8
Q ss_pred CCCCCCCCCCcCCCCcCC
Q psy1605 38 APPYCEYPGGHNLGLEHD 55 (718)
Q Consensus 38 aG~~CAHELGHNfGm~HD 55 (718)
...+++|||||+||+.||
T Consensus 107 ~~~~~~HEiGH~lGl~Hd 124 (124)
T PF13582_consen 107 GVDTFAHEIGHNLGLNHD 124 (124)
T ss_dssp STTHHHHHHHHHTT----
T ss_pred cceEeeehhhHhcCCCCC
Confidence 345679999999999997
No 22
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=93.58 E-value=0.018 Score=58.14 Aligned_cols=30 Identities=40% Similarity=0.556 Sum_probs=22.0
Q ss_pred CCCCCCCCcCCCCcCCCCC--------cccCCCCcccc
Q psy1605 40 PYCEYPGGHNLGLEHDTTE--------CTCPSDRCIMA 69 (718)
Q Consensus 40 ~~CAHELGHNfGm~HDg~~--------C~C~~g~CIMs 69 (718)
.+++||+||+||+.||... +.|..+..||.
T Consensus 139 ~~~aHEiGH~lGl~H~~~~~~~~~~~~~~~~~~~tIMs 176 (206)
T PF13583_consen 139 QTFAHEIGHNLGLRHDFDYSGDPYSYAYECDSGQTIMS 176 (206)
T ss_pred hHHHHHHHHHhcCCCCcccCCCcccccccCCCCCEEeC
Confidence 3589999999999998741 33344567885
No 23
>KOG3607|consensus
Probab=93.47 E-value=0.049 Score=64.72 Aligned_cols=35 Identities=46% Similarity=1.177 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCCcccCCCCeeecCCCCCCCCCCC
Q psy1605 11 PVADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYP 45 (718)
Q Consensus 11 ~~~~Cp~~Cn~~GVCn~~gsC~Cd~GwaG~~CAHE 45 (718)
....|+.+||+||+|+++.+|||+.||.+++|..-
T Consensus 624 ~~~~~~~~C~g~GVCnn~~~ChC~~gwapp~C~~~ 658 (716)
T KOG3607|consen 624 NSSCCPTTCNGHGVCNNELNCHCEPGWAPPFCFIF 658 (716)
T ss_pred cccccccccCCCcccCCCcceeeCCCCCCCccccc
Confidence 34456889999999999999999999999999654
No 24
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=92.65 E-value=0.1 Score=39.03 Aligned_cols=26 Identities=38% Similarity=1.023 Sum_probs=22.6
Q ss_pred CCCCCCCcccCC-CCeeecCCCCCCCC
Q psy1605 17 FNCHDQGVCNSR-GHCHCHPGFAPPYC 42 (718)
Q Consensus 17 ~~Cn~~GVCn~~-gsC~Cd~GwaG~~C 42 (718)
..|+.||.|+.. +.|.|+.+|.|..|
T Consensus 6 ~~C~~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeCCCCEEECCCCCcCCCC
Confidence 359999999965 89999999999765
No 25
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=92.16 E-value=0.043 Score=55.02 Aligned_cols=48 Identities=29% Similarity=0.379 Sum_probs=32.6
Q ss_pred CCCCCCcccCCCCeeec--CCCCCC-------------C----CCCCCCcCCCCcCCCCCcccCCCCccccCC
Q psy1605 18 NCHDQGVCNSRGHCHCH--PGFAPP-------------Y----CEYPGGHNLGLEHDTTECTCPSDRCIMAPS 71 (718)
Q Consensus 18 ~Cn~~GVCn~~gsC~Cd--~GwaG~-------------~----CAHELGHNfGm~HDg~~C~C~~g~CIMs~~ 71 (718)
.....|.|...+.+.+. ..+... . .+||+||.|||.| |....|+|+..
T Consensus 86 ~nfvfG~a~~~~~~aVvS~~Rl~~~~~~~~~~~~l~~~R~~k~~~HElGH~lGL~H------C~~~~CvM~~s 152 (179)
T PRK13267 86 LNFVFGLAYPNLRGAVISTYRLRPEFYGNKPDSELFEERVRKEVTHELGHTLGLEH------CDNPRCVMNFS 152 (179)
T ss_pred CCceeEEeecCCCEEEEEccccChhhccccchHHHHHHHHHHHHHHHHHHHcCCcc------CCCCCccCCCC
Confidence 45677888887666551 111111 1 4799999999999 55678999754
No 26
>COG1913 Predicted Zn-dependent proteases [General function prediction only]
Probab=91.22 E-value=0.052 Score=54.73 Aligned_cols=24 Identities=50% Similarity=0.866 Sum_probs=20.0
Q ss_pred CCCCCcCCCCcCCCCCcccCCCCccccCCC
Q psy1605 43 EYPGGHNLGLEHDTTECTCPSDRCIMAPSS 72 (718)
Q Consensus 43 AHELGHNfGm~HDg~~C~C~~g~CIMs~~s 72 (718)
-||+||.||+.| |++..|+|+.+.
T Consensus 129 ~HElGH~~GL~H------C~N~~CVM~FSn 152 (181)
T COG1913 129 LHELGHLLGLSH------CPNPRCVMNFSN 152 (181)
T ss_pred HHHhhhhcCccc------CCCCCcEEeCCc
Confidence 599999999998 566679997764
No 27
>KOG1226|consensus
Probab=82.55 E-value=1.9 Score=51.83 Aligned_cols=28 Identities=36% Similarity=1.011 Sum_probs=24.8
Q ss_pred CCCCCCcccCCCCeeecCCCCCCCCCCCC
Q psy1605 18 NCHDQGVCNSRGHCHCHPGFAPPYCEYPG 46 (718)
Q Consensus 18 ~Cn~~GVCn~~gsC~Cd~GwaG~~CAHEL 46 (718)
.|.+||.|.= |.|+|+.||+|..|.|..
T Consensus 556 lC~g~G~C~C-G~CvC~~GwtG~~C~C~~ 583 (783)
T KOG1226|consen 556 LCGGHGRCEC-GRCVCNPGWTGSACNCPL 583 (783)
T ss_pred ccCCCCeEeC-CcEEcCCCCccCCCCCCC
Confidence 4999999998 999999999999887763
No 28
>PF07998 Peptidase_M54: Peptidase family M54; InterPro: IPR012962 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents zinc-dependent peptidases belonging to the MEROPS peptidase family M54, more commonly known as the archaemetzincins. The family has a wide taxonomic distribution, being found in archaea, bacteria and eukaryotes. Two human homologues have been characterised []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 3LMC_A 2XHQ_A 2X7M_A.
Probab=80.87 E-value=0.27 Score=50.20 Aligned_cols=22 Identities=45% Similarity=0.840 Sum_probs=14.2
Q ss_pred CCCCCcCCCCcCCCCCcccCCCCccccCC
Q psy1605 43 EYPGGHNLGLEHDTTECTCPSDRCIMAPS 71 (718)
Q Consensus 43 AHELGHNfGm~HDg~~C~C~~g~CIMs~~ 71 (718)
.||+||.||+.| |.. .|+|+..
T Consensus 150 ~HElGH~~GL~H------C~~-~CvM~~s 171 (194)
T PF07998_consen 150 VHELGHLFGLDH------CEN-RCVMNFS 171 (194)
T ss_dssp HHHHHHHTT----------SS-TSTTS--
T ss_pred HHHHHHHcCCcC------CCC-CCccCCC
Confidence 599999999998 556 7999765
No 29
>KOG3658|consensus
Probab=78.37 E-value=4.1 Score=48.59 Aligned_cols=24 Identities=25% Similarity=0.713 Sum_probs=20.2
Q ss_pred cccCCccccCCccceeC-ceecccc
Q psy1605 162 FKMDGETCKGGEAFCYE-GSCRTHS 185 (718)
Q Consensus 162 ~~~DGTpC~ng~G~Cy~-G~C~t~d 185 (718)
+.++|++|++-+|||.. ++|+..+
T Consensus 630 ~L~pGsPC~~~~GyCdvf~KCr~vd 654 (764)
T KOG3658|consen 630 YLRPGSPCNNYKGYCDVFGKCRKVD 654 (764)
T ss_pred ecCCCCcCcCCcceeccccceeeec
Confidence 77899999987899988 8887654
No 30
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=77.50 E-value=0.35 Score=45.76 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.1
Q ss_pred CCCCCCCcCCCCcCCCC
Q psy1605 41 YCEYPGGHNLGLEHDTT 57 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg~ 57 (718)
+.+|||||.||+.|...
T Consensus 97 ~~~HEiGHaLGL~H~~~ 113 (165)
T cd04268 97 TAEHELGHALGLRHNFA 113 (165)
T ss_pred HHHHHHHHHhcccccCc
Confidence 46799999999988653
No 31
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=76.75 E-value=0.93 Score=49.23 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=20.5
Q ss_pred CCCCCCCcCCCCcCCCC-CcccCCCCccc
Q psy1605 41 YCEYPGGHNLGLEHDTT-ECTCPSDRCIM 68 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg~-~C~C~~g~CIM 68 (718)
.+.||||||||+.|-.. .|.=.+..|.|
T Consensus 153 ~~~HElgHN~GL~Ha~~~~~eYgD~s~~M 181 (314)
T PF05548_consen 153 TIMHELGHNLGLWHAGRNGCEYGDPSDPM 181 (314)
T ss_pred HHHHHhhhhccccccCCCCccccCCCccC
Confidence 56899999999999763 34334556777
No 32
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=75.40 E-value=0.57 Score=43.74 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=18.4
Q ss_pred CCCCCCcCCCCcCCCCCcccCCCCccccCC
Q psy1605 42 CEYPGGHNLGLEHDTTECTCPSDRCIMAPS 71 (718)
Q Consensus 42 CAHELGHNfGm~HDg~~C~C~~g~CIMs~~ 71 (718)
..|||||.||+.|... ..-||++.
T Consensus 109 ~~HEiGHaLGL~H~~~------~~svM~~~ 132 (154)
T PF00413_consen 109 AIHEIGHALGLDHSND------PNSVMYPY 132 (154)
T ss_dssp HHHHHHHHTTBESSSS------TTSTTSSS
T ss_pred hhhccccccCcCcCCC------cccceeee
Confidence 4799999999999653 23588775
No 33
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=74.29 E-value=0.55 Score=43.73 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.5
Q ss_pred CCCCCCCcCCCCcCCCC
Q psy1605 41 YCEYPGGHNLGLEHDTT 57 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg~ 57 (718)
+.+|||||.||+.|...
T Consensus 89 ~~~HEigHaLGl~H~~~ 105 (140)
T smart00235 89 VAAHELGHALGLYHEQS 105 (140)
T ss_pred cHHHHHHHHhcCCcCCC
Confidence 57899999999998763
No 34
>KOG0994|consensus
Probab=73.49 E-value=9 Score=48.25 Aligned_cols=56 Identities=25% Similarity=0.645 Sum_probs=34.6
Q ss_pred cCcCCCCcccC--CCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC---CCCCCCccccCCccccCC
Q psy1605 108 TCMLNVNATCA--TGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDS---EFCPSDVFKMDGETCKGG 172 (718)
Q Consensus 108 tCkLk~GAqCs--nG~CC~~~~Cqf~~sGtvCR~a~~eCDlpEyCnG~S---~~CP~D~~~~DGTpC~ng 172 (718)
.|.-..+-+|. +|+| +|+.+..|..|.. |. ..|+-.-. ..|-.|....+...|...
T Consensus 1070 ~Cd~~~~pqCN~ftGQC----qCkpGfGGR~C~q----Cq-el~WGdP~~~C~aCdCd~rG~~tpQCdr~ 1130 (1758)
T KOG0994|consen 1070 NCDPIGGPQCNEFTGQC----QCKPGFGGRTCSQ----CQ-ELYWGDPNEKCRACDCDPRGIETPQCDRA 1130 (1758)
T ss_pred CCCccCCccccccccce----eccCCCCCcchhH----HH-HhhcCCCCCCceecCCCCCCCCCCCcccc
Confidence 44445566886 7999 8999999999985 53 22221111 235556666667777643
No 35
>TIGR02232 myxo_disulf_rpt Myxococcus cysteine-rich repeat. This model represents a sequence region shared between several proteins of Myxococcus xanthus DK 1622 and some eukaryotic proteins that include human pappalysin-1. The region of about 40 amino acids contains several conserved Cys residues presumed to form disulfide bonds. The region appears in up to 13 repeats in Myxococcus.
Probab=72.22 E-value=4 Score=32.04 Aligned_cols=36 Identities=42% Similarity=0.898 Sum_probs=23.2
Q ss_pred CccCCceeecCCCccCCCcccccCcCCCCccCcCCCCcc
Q psy1605 78 PVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNAT 116 (718)
Q Consensus 78 s~CGNgiVE~GEECDCG~~eeC~d~CCd~~tCkLk~GAq 116 (718)
+.||++++..+|+||=|-.. ..+=|. ..|++-.+-.
T Consensus 2 ~~CGdG~~~~~EeCDDGN~~--~~DGCs-~~C~iE~~~~ 37 (38)
T TIGR02232 2 PTCGDGIIEPGEECDDGNTT--SGDGCS-ATCRLEEGFA 37 (38)
T ss_pred CcCCCCcCcCCccccCCCCc--CCCCcC-cccccCCCCC
Confidence 57999999999999987421 112232 4566654443
No 36
>KOG4289|consensus
Probab=71.76 E-value=7.6 Score=49.89 Aligned_cols=21 Identities=43% Similarity=1.149 Sum_probs=12.4
Q ss_pred cccC-CCCCCCCCCCCCCCCCCCccC
Q psy1605 115 ATCA-TGSCCNLETCQPHTAGRQCRA 139 (718)
Q Consensus 115 AqCs-nG~CC~~~~Cqf~~sGtvCR~ 139 (718)
..|+ +|+| -|+.+.-|..|..
T Consensus 1817 r~C~adGqC----~C~pgaiGRqCdr 1838 (2531)
T KOG4289|consen 1817 RECDADGQC----PCKPGAIGRQCDR 1838 (2531)
T ss_pred ccccCCCcC----CCCCccccccccc
Confidence 3454 5666 5666666666653
No 37
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=70.35 E-value=1.3 Score=42.34 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=18.4
Q ss_pred CCCCCCcCCCCcCCCCCcccCCCCccccCC
Q psy1605 42 CEYPGGHNLGLEHDTTECTCPSDRCIMAPS 71 (718)
Q Consensus 42 CAHELGHNfGm~HDg~~C~C~~g~CIMs~~ 71 (718)
..|||||.||+.|.... ..=||++.
T Consensus 108 ~~HEiGHaLGL~H~~~~-----~~siM~p~ 132 (156)
T cd04279 108 ALHELGHALGLWHHSDR-----PEDAMYPS 132 (156)
T ss_pred HHHHhhhhhcCCCCCCC-----ccceeeee
Confidence 47999999999997642 12478765
No 38
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=69.28 E-value=1 Score=46.71 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.7
Q ss_pred CCCCCCCcCCCCcCCC
Q psy1605 41 YCEYPGGHNLGLEHDT 56 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg 56 (718)
.++|||||.+|+.|-+
T Consensus 136 vi~HEiGH~IGfRHTD 151 (211)
T PF12388_consen 136 VITHEIGHCIGFRHTD 151 (211)
T ss_pred HHHHHhhhhccccccC
Confidence 4689999999999944
No 39
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=68.17 E-value=1.7 Score=41.66 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=17.8
Q ss_pred CCCCCCcCCCCcCCCCCcccCCCCccccCC
Q psy1605 42 CEYPGGHNLGLEHDTTECTCPSDRCIMAPS 71 (718)
Q Consensus 42 CAHELGHNfGm~HDg~~C~C~~g~CIMs~~ 71 (718)
..|||||.||+.|... ..=||++.
T Consensus 111 ~~HEiGHaLGL~H~~~------~~~vM~~~ 134 (157)
T cd04278 111 AAHEIGHALGLGHSSD------PDSIMYPY 134 (157)
T ss_pred HHHHhccccccCCCCC------CcCeeccc
Confidence 4699999999998542 13488765
No 40
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=65.59 E-value=1 Score=44.23 Aligned_cols=16 Identities=44% Similarity=0.455 Sum_probs=13.4
Q ss_pred CCCCCCCcCCCCcCCC
Q psy1605 41 YCEYPGGHNLGLEHDT 56 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg 56 (718)
++.|||||.||+.|..
T Consensus 116 t~~HEiGHaLGL~H~~ 131 (186)
T cd04277 116 TIIHEIGHALGLEHPG 131 (186)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 4579999999998854
No 41
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=62.42 E-value=2.3 Score=44.27 Aligned_cols=18 Identities=33% Similarity=0.278 Sum_probs=15.1
Q ss_pred CCCCCCCCCcCCCCcCCC
Q psy1605 39 PPYCEYPGGHNLGLEHDT 56 (718)
Q Consensus 39 G~~CAHELGHNfGm~HDg 56 (718)
|.+.+||+||.||+.|--
T Consensus 138 g~t~~HEvGH~lGL~HtF 155 (225)
T cd04275 138 GDTATHEVGHWLGLYHTF 155 (225)
T ss_pred cceeEEeccceeeeeeee
Confidence 457899999999998853
No 42
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=58.59 E-value=0.86 Score=44.58 Aligned_cols=17 Identities=35% Similarity=0.300 Sum_probs=11.9
Q ss_pred CCCCCCCCCcCCCCcCC
Q psy1605 39 PPYCEYPGGHNLGLEHD 55 (718)
Q Consensus 39 G~~CAHELGHNfGm~HD 55 (718)
+.+.+||+||-||+.|-
T Consensus 70 g~TltHEvGH~LGL~Ht 86 (154)
T PF05572_consen 70 GKTLTHEVGHWLGLYHT 86 (154)
T ss_dssp SHHHHHHHHHHTT---T
T ss_pred ccchhhhhhhhhccccc
Confidence 55678999999999884
No 43
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=49.87 E-value=2.8 Score=42.91 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=13.9
Q ss_pred CCCCCCCcCCCCcCCC
Q psy1605 41 YCEYPGGHNLGLEHDT 56 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg 56 (718)
.++||+||.||+.|.-
T Consensus 119 ~~~he~gh~lGl~hn~ 134 (197)
T cd04276 119 LLAHEVGHTLGLRHNF 134 (197)
T ss_pred HHHHHHHHHhcCcccc
Confidence 4689999999999964
No 44
>PF10462 Peptidase_M66: Peptidase M66; InterPro: IPR019503 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of metallopeptidases belonging to MEROPS peptidase family M66 (StcE peptidase, clan MA). The StcE peptidase is a virulence factor found in Shiga toxigenic Escherichia coli strains. StcE peptidase cleaves C1 esterase inhibitor []. The SwissProt proteins in this entry have been name "Dictomallein". ; GO: 0004222 metalloendopeptidase activity; PDB: 3UJZ_A.
Probab=49.47 E-value=2.7 Score=45.87 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=10.8
Q ss_pred CCCCCCCcCCCCcC
Q psy1605 41 YCEYPGGHNLGLEH 54 (718)
Q Consensus 41 ~CAHELGHNfGm~H 54 (718)
..+||+||+||+.|
T Consensus 196 ~f~HE~GH~~GL~H 209 (305)
T PF10462_consen 196 EFSHELGHNFGLGH 209 (305)
T ss_dssp HHHHHHHHTTT--S
T ss_pred eeehhhhhhcCCCC
Confidence 46899999999999
No 45
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=48.92 E-value=5.9 Score=42.20 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=12.1
Q ss_pred CCCCCCCcCCCCcC
Q psy1605 41 YCEYPGGHNLGLEH 54 (718)
Q Consensus 41 ~CAHELGHNfGm~H 54 (718)
+++||+||.||+.+
T Consensus 168 v~~HE~gH~lGLPD 181 (286)
T TIGR03296 168 VIAHELGHDLGLPD 181 (286)
T ss_pred eeehhhhcccCCCc
Confidence 57899999999964
No 46
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=46.79 E-value=2.2 Score=41.55 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=11.2
Q ss_pred CCCCCCcCCCCc-CCCCCc
Q psy1605 42 CEYPGGHNLGLE-HDTTEC 59 (718)
Q Consensus 42 CAHELGHNfGm~-HDg~~C 59 (718)
.+||+||.||+. |-.+-|
T Consensus 81 aaHE~GHiLGLPD~y~GpC 99 (132)
T PF02031_consen 81 AAHELGHILGLPDHYPGPC 99 (132)
T ss_dssp HHHHHHHHHT----TTS-T
T ss_pred eeehhccccCCCCCCCCcc
Confidence 589999999995 444445
No 47
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=46.42 E-value=3 Score=41.76 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.5
Q ss_pred CCCCCCCcCCCCcCCC
Q psy1605 41 YCEYPGGHNLGLEHDT 56 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg 56 (718)
++.|||||.||+.|..
T Consensus 95 ~i~HElgHaLG~~HEh 110 (198)
T cd04327 95 VVLHEFGHALGFIHEH 110 (198)
T ss_pred HHHHHHHHHhcCcccc
Confidence 5679999999998864
No 48
>KOG1924|consensus
Probab=43.82 E-value=79 Score=39.10 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=6.8
Q ss_pred ccccCCCCCCCcccc
Q psy1605 487 TDVNFKRPNLPAFGS 501 (718)
Q Consensus 487 ~~~~~~~~~~~~f~s 501 (718)
+++..-.+..+.|-|
T Consensus 502 ~Ki~~l~ae~~al~s 516 (1102)
T KOG1924|consen 502 EKIKLLEAEKQALSS 516 (1102)
T ss_pred hhcccCchhhhhccC
Confidence 444333445555543
No 49
>smart00051 DSL delta serrate ligand.
Probab=42.14 E-value=21 Score=30.48 Aligned_cols=24 Identities=29% Similarity=0.807 Sum_probs=20.5
Q ss_pred CCCCCcccCCCCeeecCCCCCCCC
Q psy1605 19 CHDQGVCNSRGHCHCHPGFAPPYC 42 (718)
Q Consensus 19 Cn~~GVCn~~gsC~Cd~GwaG~~C 42 (718)
+..|..|+..|.|.|..||.|..|
T Consensus 40 ~~~~~~Cd~~G~~~C~~Gw~G~~C 63 (63)
T smart00051 40 FFGHYTCDENGNKGCLEGWMGPYC 63 (63)
T ss_pred ccCCccCCcCCCEecCCCCcCCCC
Confidence 467889999889999999998765
No 50
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=36.75 E-value=6.2 Score=39.24 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=13.5
Q ss_pred CCCCCCCcCCCCcCCC
Q psy1605 41 YCEYPGGHNLGLEHDT 56 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg 56 (718)
++.|||||.||+.|.-
T Consensus 77 ~v~HE~~HalG~~HEh 92 (180)
T cd04280 77 TIVHELMHALGFYHEQ 92 (180)
T ss_pred hhHHHHHHHhcCcchh
Confidence 4579999999998854
No 51
>PF13948 DUF4215: Domain of unknown function (DUF4215)
Probab=33.34 E-value=25 Score=28.26 Aligned_cols=19 Identities=42% Similarity=1.088 Sum_probs=16.7
Q ss_pred CCccCCceeecCCCccCCC
Q psy1605 77 SPVCGNGFVEDGEECDCGL 95 (718)
Q Consensus 77 ~s~CGNgiVE~GEECDCG~ 95 (718)
.++||++++...|+||=+.
T Consensus 18 ~~~CGDgii~~~E~CDD~N 36 (47)
T PF13948_consen 18 EPICGDGIIVGDEQCDDGN 36 (47)
T ss_pred ccccCCCeEECCcccCCCC
Confidence 4799999999999999774
No 52
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=32.00 E-value=6.9 Score=39.64 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.6
Q ss_pred CCCCCCCcCCCCcCCC
Q psy1605 41 YCEYPGGHNLGLEHDT 56 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg 56 (718)
++.|||||.||+.|.-
T Consensus 80 ~i~HEl~HaLG~~HEh 95 (182)
T cd04283 80 IIQHELLHALGFYHEQ 95 (182)
T ss_pred hHHHHHHHHhCCcccc
Confidence 4579999999998864
No 53
>KOG1219|consensus
Probab=31.90 E-value=66 Score=44.16 Aligned_cols=35 Identities=26% Similarity=0.644 Sum_probs=25.5
Q ss_pred CCCC-CCCCCCCcccCCC----CeeecCCCCCCCCCCCCC
Q psy1605 13 ADCP-FNCHDQGVCNSRG----HCHCHPGFAPPYCEYPGG 47 (718)
Q Consensus 13 ~~Cp-~~Cn~~GVCn~~g----sC~Cd~GwaG~~CAHELG 47 (718)
..|. .-|..+|.|+..+ .|.|...|.|..|..++-
T Consensus 3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~~e 3904 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEIDLE 3904 (4289)
T ss_pred cccccCcccCCCEecCCCCCceEEeCcccccCcccccccc
Confidence 4563 3589999998754 588888888888866553
No 54
>PF08116 Toxin_29: PhTx neurotoxin family; InterPro: IPR012634 This family consists of PhTx insecticidal neurotoxins that are found in the venom of Phoneutria nigriventer (Brazilian armed spider). The venom of the P. nigrivente contains numerous neurotoxic polypeptides of 30-140 amino acids, which exert a range of biological effects. While some of these neurotoxins are lethal to mice after intracerebroventricular injections, others are extremely toxic to insects of the orders Diptera and Dictyoptera but had much weaker toxic effects on mice [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=31.85 E-value=13 Score=27.99 Aligned_cols=27 Identities=41% Similarity=1.051 Sum_probs=17.3
Q ss_pred CcCCCCcccC-CCCCCCCCCCCCCCCCCCc
Q psy1605 109 CMLNVNATCA-TGSCCNLETCQPHTAGRQC 137 (718)
Q Consensus 109 CkLk~GAqCs-nG~CC~~~~Cqf~~sGtvC 137 (718)
|++. |.+|. +|+||.. .|.-..-|.+|
T Consensus 3 C~~n-GqQCtSDgqCC~G-~C~tAF~g~IC 30 (31)
T PF08116_consen 3 CRYN-GQQCTSDGQCCNG-RCRTAFMGRIC 30 (31)
T ss_pred cccC-ccccCcCCceecc-hhHHHHhhhhc
Confidence 4443 67775 8888873 67666656555
No 55
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=31.46 E-value=7.7 Score=39.81 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.5
Q ss_pred CCCCCCCcCCCCcCCC
Q psy1605 41 YCEYPGGHNLGLEHDT 56 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg 56 (718)
++.|||||.||+.|.-
T Consensus 90 ti~HEl~HaLGf~HEh 105 (200)
T cd04281 90 IVVHELGHVIGFWHEH 105 (200)
T ss_pred hHHHHHHHHhcCcchh
Confidence 4579999999998854
No 56
>smart00608 ACR ADAM Cysteine-Rich Domain.
Probab=30.15 E-value=31 Score=33.45 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=19.5
Q ss_pred CccccCCccccCCccceeCceecc
Q psy1605 160 DVFKMDGETCKGGEAFCYEGSCRT 183 (718)
Q Consensus 160 D~~~~DGTpC~ng~G~Cy~G~C~t 183 (718)
...+.|||.|+.+ .+|++++|+.
T Consensus 114 ~g~V~dGT~CG~~-kvC~n~~Cv~ 136 (137)
T smart00608 114 LGMVKDGTKCGPG-KVCINGQCVD 136 (137)
T ss_pred ccccCCCCCcCCC-CccCCCCccc
Confidence 3578999999865 7999999975
No 57
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=25.00 E-value=13 Score=39.22 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=13.6
Q ss_pred CCCCCCCcCCCCcCCC
Q psy1605 41 YCEYPGGHNLGLEHDT 56 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg 56 (718)
++.|||||.||+-|.-
T Consensus 123 ti~HEl~HalGf~HEq 138 (230)
T cd04282 123 TVEHEFLHALGFYHEQ 138 (230)
T ss_pred hHHHHHHHHhCCcccc
Confidence 4679999999998865
No 58
>smart00051 DSL delta serrate ligand.
Probab=22.88 E-value=91 Score=26.69 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=16.4
Q ss_pred CcccC-CCCCCCCCCCCCCCCCCCc
Q psy1605 114 NATCA-TGSCCNLETCQPHTAGRQC 137 (718)
Q Consensus 114 GAqCs-nG~CC~~~~Cqf~~sGtvC 137 (718)
+..|+ +|.| .|..+|.|..|
T Consensus 43 ~~~Cd~~G~~----~C~~Gw~G~~C 63 (63)
T smart00051 43 HYTCDENGNK----GCLEGWMGPYC 63 (63)
T ss_pred CccCCcCCCE----ecCCCCcCCCC
Confidence 47787 7888 89999998876
No 59
>smart00209 TSP1 Thrombospondin type 1 repeats. Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
Probab=22.80 E-value=59 Score=25.17 Aligned_cols=45 Identities=20% Similarity=0.493 Sum_probs=30.3
Q ss_pred ccccccccccCcCCchhhhhcccCCCCCCCCCCCCCCCccccCCCCCC
Q psy1605 186 DQCLLLWGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEEDKC 233 (718)
Q Consensus 186 ~QCs~lwG~ga~~A~~~Cye~N~~GdrfGnCG~~~~~~~Yv~C~~~DC 233 (718)
..|+..+|.|.+...+.|...+.. .....|... ...+..|+..+|
T Consensus 8 s~Cs~tCg~G~~~R~r~c~~~~~~-~~~~~C~~~--~~~~~~C~~~~C 52 (53)
T smart00209 8 SPCSVTCGGGVQTRTRSCCSPPPQ-NGGGPCTGE--DVETRACNEQPC 52 (53)
T ss_pred ccccCCCCCCeEEEEEecCCCCCC-CCCCcCcCC--CCEEeecCCCCC
Confidence 368888999988888889863222 223478643 237778887766
No 60
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=22.48 E-value=7.3 Score=39.10 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=11.7
Q ss_pred CCCCCCCcCCCCcCCC
Q psy1605 41 YCEYPGGHNLGLEHDT 56 (718)
Q Consensus 41 ~CAHELGHNfGm~HDg 56 (718)
++.|||||.||+.|.-
T Consensus 82 ~i~HEl~HaLG~~HEh 97 (191)
T PF01400_consen 82 TILHELGHALGFWHEH 97 (191)
T ss_dssp HHHHHHHHHHTB--GG
T ss_pred chHHHHHHHHhhhhhh
Confidence 4579999999998754
No 61
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=22.08 E-value=37 Score=21.06 Aligned_cols=13 Identities=46% Similarity=1.467 Sum_probs=9.3
Q ss_pred CeeecCCCCCCCC
Q psy1605 30 HCHCHPGFAPPYC 42 (718)
Q Consensus 30 sC~Cd~GwaG~~C 42 (718)
.|.|..||.|..|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 3888999988754
No 62
>KOG1565|consensus
Probab=22.04 E-value=34 Score=39.57 Aligned_cols=34 Identities=32% Similarity=0.363 Sum_probs=23.4
Q ss_pred CCCCCCcCCCCcCCCCCcccCCCCccccCCCccccCCccCCcee
Q psy1605 42 CEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFDSPVCGNGFV 85 (718)
Q Consensus 42 CAHELGHNfGm~HDg~~C~C~~g~CIMs~~s~lf~~s~CGNgiV 85 (718)
.+||+||.||+.|... ..=||++.. .. .+++-.+
T Consensus 215 a~HEiGH~LGL~HS~~------~~aiM~P~y---~~-~~~~~~L 248 (469)
T KOG1565|consen 215 AAHEIGHALGLGHSSD------PDAIMYPFY---QP-DSGNFDL 248 (469)
T ss_pred hhhhcccccccCCCCC------ccccccccc---cc-CCCCccc
Confidence 4799999999999742 235998873 22 5555544
No 63
>PHA03247 large tegument protein UL36; Provisional
Probab=21.73 E-value=5.5e+02 Score=36.42 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=11.8
Q ss_pred CCCCCcccCcccccccch
Q psy1605 350 PYARPLISSPILSDTTSQ 367 (718)
Q Consensus 350 ~~arp~issp~l~~~t~~ 367 (718)
|++|+++..+++.++-.-
T Consensus 2881 PP~~~l~~P~~~~~t~s~ 2898 (3151)
T PHA03247 2881 PPVRRLARPAVSRSTESF 2898 (3151)
T ss_pred CCCCCCCCCCCCCCCCCC
Confidence 477777777776665544
No 64
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=21.52 E-value=49 Score=39.48 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=17.8
Q ss_pred cCCCCCCCCCCCCCcCC---CCcCCCC
Q psy1605 34 HPGFAPPYCEYPGGHNL---GLEHDTT 57 (718)
Q Consensus 34 d~GwaG~~CAHELGHNf---Gm~HDg~ 57 (718)
++|=.|.+++|||||.| |...|+.
T Consensus 483 NYGgIGaVIgHEI~HgFDdqGakfD~~ 509 (654)
T COG3590 483 NYGGIGAVIGHEIGHGFDDQGAKFDGD 509 (654)
T ss_pred cccCccceehhhhcccccCCccccCCC
Confidence 45556778999999998 5666653
No 65
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=20.61 E-value=30 Score=33.85 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=12.0
Q ss_pred CCCCCCcCCCCcCCC
Q psy1605 42 CEYPGGHNLGLEHDT 56 (718)
Q Consensus 42 CAHELGHNfGm~HDg 56 (718)
.-||+||.||+..|+
T Consensus 113 liHEIgHhFGLsDdd 127 (136)
T COG3824 113 LIHEIGHHFGLSDDD 127 (136)
T ss_pred hhhhhhhhcCCChhH
Confidence 459999999997554
Done!