RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1605
(718 letters)
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 216 bits (552), Expect = 2e-63
Identities = 80/219 (36%), Positives = 103/219 (47%), Gaps = 38/219 (17%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAP----------------------------------SS 72
GHNLG+ HD CTC ++C+M+ S+
Sbjct: 153 GHNLGMNHDRGFCTCGFNKCVMSTRRTKPAYQFSSCSVREHQRYLLRDRPQCILNKPLST 212
Query: 73 RLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHT 132
+ P+CGN FVE GEECDCG C++ACCNATTC L A C + CC C+
Sbjct: 213 DIVSPPICGNYFVEVGEECDCGSPADCQSACCNATTCKLQHEAQCDSEECCE--KCKFKG 270
Query: 133 AGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLW 192
A +CRAA +CDLPE CTG S CP+DVF+ +G C+ + +CY G C ++QC+ L
Sbjct: 271 ARAECRAAKDDCDLPELCTGQSAECPTDVFQRNGLPCQNNQGYCYNGKCPIMTNQCIALR 330
Query: 193 GPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEED 231
GP S CF LN G C C
Sbjct: 331 GPGVKVSRDSCFTLNQRTRGCGLCR--MEYGRKIPCAAK 367
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 211 bits (539), Expect = 1e-61
Identities = 83/218 (38%), Positives = 107/218 (49%), Gaps = 40/218 (18%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPSS---------------------------------- 72
GHNLG++HD CTC + C+MA +
Sbjct: 155 GHNLGMDHDKDTCTCGTRPCVMAGALSCEASFLFSDCSQKDHREFLIKNMPQCILKKPLK 214
Query: 73 -RLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPH 131
+ VCGN FVE GEECDCG +C++ CC+ATTC L A CA G CC + C+
Sbjct: 215 TDVVSPAVCGNYFVEVGEECDCGSPRTCRDPCCDATTCKLRQGAQCAEGLCC--DQCRFK 272
Query: 132 TAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLL 191
AG +CRAA ECD+ + CTG S C F+ +G+ CK +CY G C +DQC+ L
Sbjct: 273 GAGTECRAAKDECDMADVCTGRSAECTDR-FQRNGQPCKNNNGYCYNGKCPIMADQCIAL 331
Query: 192 WGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCE 229
+GP A+ S CF N GN +G C K T CE
Sbjct: 332 FGPGATVSQDACFQFNREGNHYGYCR--KEQNTKIACE 367
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 207 bits (528), Expect = 4e-60
Identities = 76/220 (34%), Positives = 102/220 (46%), Gaps = 39/220 (17%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS----------------------------------- 71
GHNLG+ HD+ C+C CIM P
Sbjct: 146 GHNLGINHDSGYCSCGDYACIMRPEISPEPSTFFSNCSYFECWDFIMNHNPECILNEPLG 205
Query: 72 SRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPH 131
+ + PVCGN +E GEECDCG ++C+N CC+A TC L + C G CC C+
Sbjct: 206 TDIISPPVCGNELLEVGEECDCGTPENCQNECCDAATCKLKSGSQCGHGDCCE--QCKFS 263
Query: 132 TAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLL 191
+G +CRA+ ECD E CTG S CP+DVF +G+ C +CY G+C QC L
Sbjct: 264 KSGTECRASMSECDPAEHCTGQSSECPADVFHKNGQPCLDNYGYCYNGNCPIMYHQCYDL 323
Query: 192 WGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEED 231
+G ++ CF+ N GN +G C K N C +
Sbjct: 324 FGADVYEAEDSCFERNQKGNYYGYC--RKENGNKIPCAPE 361
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 206 bits (524), Expect = 2e-59
Identities = 77/224 (34%), Positives = 99/224 (44%), Gaps = 41/224 (18%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPSS---------------------------------- 72
HNLG+ HD C C C+M+P
Sbjct: 148 SHNLGMYHDGKNCICNDSSCVMSPVLSDQPSKLFSNCSIHDYQRYLTRYKPKCIFNPPLR 207
Query: 73 -RLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPH 131
+ PVCGN E+GEECDCG +C+N CC+A TC L A C G CC C+
Sbjct: 208 KDIVSPPVCGNEIWEEGEECDCGSPANCQNPCCDAATCKLKPGAECGNGLCC--YQCKIK 265
Query: 132 TAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLL 191
TAG CR A ECD+PE CTG S CP D + +G+ C+ +CY G C +QC+ L
Sbjct: 266 TAGTVCRRARDECDVPEHCTGQSAECPRDQLQQNGKPCQNNRGYCYNGDCPIMRNQCISL 325
Query: 192 WGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEED--KC 233
+G A+ + CF N G+ +G C N C KC
Sbjct: 326 FGSRANVAKDSCFQENLKGSYYGYCRK--ENGRKIPCAPQDVKC 367
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 177 bits (450), Expect = 2e-49
Identities = 72/219 (32%), Positives = 95/219 (43%), Gaps = 55/219 (25%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPSS---------------------------------- 72
GHNLG+ HD C C CIM
Sbjct: 148 GHNLGIHHDKASCICIPGPCIMLKKRTAPAFQFSSCSIREYREYLLRDRPQCILNKPLST 207
Query: 73 RLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHT 132
+ P+CGN FVE GEECDCG +C++ACCNA TC
Sbjct: 208 DIVSPPICGNYFVEVGEECDCGSPQACQSACCNAATCQF-------------------KG 248
Query: 133 AGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLW 192
A +CR A +CDLPE CTG S CP+D + +G C+ +++CY G+C T ++QC+ L
Sbjct: 249 AETECRVAKDDCDLPELCTGQSAECPTDSLQRNGHPCQNNQSYCYNGTCPTLTNQCITLL 308
Query: 193 GPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEED 231
GP + S K CF+LN G+ C + T C
Sbjct: 309 GPHFTVSPKGCFNLNMRGDDGSFCRME--DGTKIPCAAK 345
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 176 bits (448), Expect = 3e-48
Identities = 72/233 (30%), Positives = 99/233 (42%), Gaps = 48/233 (20%)
Query: 47 GHNLGLEHDTTE-------CTCPSDRCIMAPS---------------------------- 71
HN+G+ D + C CIM +
Sbjct: 143 AHNIGIISDKRKLASGECKCEDTWSGCIMGDTGYYLPKKFTQCNIEEYHDFLNSGGGACL 202
Query: 72 ----SRLFDSPVCGNGFVEDGEECDCGLEDSCK-NACCNATTCMLNVNATCATGSCCNLE 126
S+L D P CGNGF+E GEECDCG C C L ++ C+ G CC
Sbjct: 203 FNKPSKLLDPPECGNGFIETGEECDCGTPAECVLEGAECCKKCTLTQDSQCSDGLCCK-- 260
Query: 127 TCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSD 186
C+ G CR A +CD+ E C+G+S C ++ KMDG +C G + C+ G C+T
Sbjct: 261 KCKFQPMGTVCREAVNDCDIRETCSGNSSQCAPNIHKMDGYSCDGVQGICFGGRCKTRDR 320
Query: 187 QCLLLWGPSASSSDKRCFD-LNTSGNRHGNCG-----YYKPNMTYAKCEEDKC 233
QC +WG ++SDK C++ LN G GNCG + + N C C
Sbjct: 321 QCKYIWGQKVTASDKYCYEKLNIEGTEKGNCGKDKDTWIQCNKRDVLCGYLLC 373
Score = 64.4 bits (156), Expect = 7e-11
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 11 PVADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGG 47
+ C GVC++ C C+ + C
Sbjct: 448 LSSKEGTICSGNGVCSNELKCVCNRHWIGSDCNTYFP 484
>2ao7_A ADAM 10; extracellular, protease, disintegrin, hydrolase; 2.90A
{Bos taurus}
Length = 192
Score = 147 bits (373), Expect = 3e-41
Identities = 42/173 (24%), Positives = 53/173 (30%), Gaps = 17/173 (9%)
Query: 76 DSPVCGNGFVEDGEECDCGLEDSCKNACC------NATTCMLNVNATC--ATGSCCNLET 127
P+CGNG VE GEECDCG D CK+ CC C L C + G CC
Sbjct: 2 GQPICGNGMVEQGEECDCGYSDQCKDECCYDANQPEGKKCKLKPGKQCSPSQGPCCT-AH 60
Query: 128 CQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSC-----R 182
C + +CR +C C G + CP+ K + C C G C
Sbjct: 61 CAFKSKTEKCRDD-SDCAKEGICNGITALCPASDPKPNFTDCNRHTQVCINGQCAGSICE 119
Query: 183 THSDQCLLLWGPSASSSDKRCFDLNTSGNRHGNCGYY--KPNMTYAKCEEDKC 233
H + + C C Y
Sbjct: 120 KHGLEECTCASSDGKDDKELCHVCCMKKMEPSTCASTGSVQWNKYFLGRTITL 172
Score = 29.2 bits (65), Expect = 3.8
Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 8/98 (8%)
Query: 76 DSPVC-GNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAG 134
+ +C + + +C+ + C N C + C C +
Sbjct: 85 ITALCPASDPKPNFTDCNRHTQ-VCINGQCAGSIC------EKHGLEECTCASSDGKDDK 137
Query: 135 RQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGG 172
C + P C + F T + G
Sbjct: 138 ELCHVCCMKKMEPSTCASTGSVQWNKYFLGRTITLQPG 175
>1j2l_A Disintegrin triflavin; RGD motif, trimestatin, snake venom, toxin;
1.70A {Trimeresurus flavoviridis} SCOP: g.20.1.1 PDB:
1fvl_A 2pji_A 1n4y_A 2pjf_A 2pjg_A 1q7i_A 1q7j_A 1l3x_A
3c05_A 3c05_B
Length = 70
Score = 90.5 bits (225), Expect = 2e-22
Identities = 31/73 (42%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 88 GEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLP 147
GEECDCG S N CC+A TC L A CA G CC+ C+ CR A +
Sbjct: 1 GEECDCG---SPSNPCCDAATCKLRPGAQCADGLCCD--QCRFKKKRTICRIARGDFP-D 54
Query: 148 EFCTGDSEFCPSD 160
+ CTG S CP
Sbjct: 55 DRCTGQSADCPRW 67
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 95.1 bits (236), Expect = 4e-21
Identities = 30/233 (12%), Positives = 49/233 (21%), Gaps = 58/233 (24%)
Query: 47 GHNLGLEHDTTEC-----TCPSDRCIMA-------------------------------- 69
GH LGL HD ++ D+ +M+
Sbjct: 152 GHLLGLSHDDSKFCEETFGSTEDKRLMSSILTSIDASKPWSKCTSATITEFLDDGHGNCL 211
Query: 70 ---PSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLE 126
P ++ + ++C+ + C C A G L
Sbjct: 212 LDLPRKQILGPEELPGQTYDATQQCNLTFGPEY-SVCPGMDVCARLWCAVVRQGQMVCLT 270
Query: 127 TCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSD 186
P A + + K + G
Sbjct: 271 KKLP--------AVEGTPCGKGRICLQGKCVDKTKKKYYSTSSHGN------WGSWGSWG 316
Query: 187 QCLLLWGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEEDKCNSNALT 239
QC G + + C N R+ Y C C N +
Sbjct: 317 QCSRSCGGGVQFAYRHC---NNPAPRNNGRYCTGKRAIYRSCSLMPCPPNGKS 366
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of
basic residues, extracellular matrix, glycoprotein,
hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens}
PDB: 3b2z_A
Length = 316
Score = 91.2 bits (226), Expect = 4e-20
Identities = 33/196 (16%), Positives = 43/196 (21%), Gaps = 77/196 (39%)
Query: 47 GHNLGLEHDTTECTC------PSDRCIMAPS-------------SR-------------- 73
GH + HD ++ + R +MAP S
Sbjct: 152 GHVFNMLHDNSKPCISLNGPLSTSRHVMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHC 211
Query: 74 LFDSP---------VCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCN 124
L D P G + D +C ++ C C
Sbjct: 212 LLDKPEAPLHLPVTFPGKDYDAD-RQCQLTFGPDSRH-CPQLPP-------------PCA 256
Query: 125 LETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTH 184
C H + C DG C G C G C H
Sbjct: 257 ALWCSGH------------LNGHAMC------QTKHSPWADGTPC-GPAQACMGGRCL-H 296
Query: 185 SDQCLLLWGPSASSSD 200
DQ P A D
Sbjct: 297 MDQLQDFNIPQADYKD 312
>1tej_A Disintegrin chain A; cryatal structure, heterodimer, protein
binding; 1.90A {Echis carinatus} SCOP: g.20.1.1 PDB:
1rmr_A 1tej_B 1z1x_A
Length = 64
Score = 83.3 bits (206), Expect = 5e-20
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 99 CKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCP 158
N CC+ C C +G CC C+ +G C+ A + + ++CTG + CP
Sbjct: 2 SVNPCCDPVICKPRDGEHCISGPCC--NNCKFLNSGTICQRARGDGN-HDYCTGITTDCP 58
Query: 159 SDVFKM 164
+ + +
Sbjct: 59 RNRYNV 64
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease,
heparin-binding, metalloproteinase, metzincin,
glycoprotein metal-binding; 2.00A {Homo sapiens} PDB:
2jih_A 3q2g_A* 3q2h_A*
Length = 300
Score = 84.9 bits (210), Expect = 3e-18
Identities = 28/178 (15%), Positives = 39/178 (21%), Gaps = 75/178 (42%)
Query: 47 GHNLGLEHDTTEC-----TCPSDRCIMAPS-------------SR--------------L 74
GH + HD + D +MA S L
Sbjct: 152 GHVFNMPHDDAKQCASLNGVNQDSHMMASMLSNLDHSQPWSPCSAYMITSFLDNGHGECL 211
Query: 75 FDSP--------VCGNGFVEDGEECDCGLEDSCKNACCNATTC-MLNVNATCATGSCCNL 125
D P + +C + K+ A+TC L T C
Sbjct: 212 MDKPQNPIQLPGDLPGTSYDANRQCQFTFGEDSKHCPDAASTCSTLWCTGTSGGVLVC-- 269
Query: 126 ETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRT 183
+T P DG +C G +C G C
Sbjct: 270 QTKH---------------------------FP----WADGTSC-GEGKWCINGKCVN 295
>1ro3_A Disintegrin echistatin; no regular secondary structure, cell
adhesion; NMR {Echis carinatus} SCOP: g.20.1.1 PDB:
2ech_A
Length = 49
Score = 69.2 bits (170), Expect = 3e-15
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 117 CATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDG 166
C +G CC C+ G C+ A R D+ ++C G + CP + K
Sbjct: 2 CESGPCC--RNCKFLKEGTICKRA-RGDDMDDYCNGKTCDCPRNPHKGPA 48
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A
{Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Length = 288
Score = 75.5 bits (185), Expect = 4e-15
Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 37/92 (40%)
Query: 47 GHNLGLEHDTTECTC------PSDRCIMAPS--------SRLF----------------- 75
GHN G EHD + +M P +++F
Sbjct: 197 GHNFGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFSQCSKQSIYKTIESKAQ 256
Query: 76 ------DSPVCGNGFVEDGEECDCGLEDSCKN 101
+ VCGN V++GEECD G +
Sbjct: 257 ECFQERSNKVCGNSRVDEGEECDPGSHHHHHH 288
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 59.0 bits (142), Expect = 4e-09
Identities = 45/255 (17%), Positives = 62/255 (24%), Gaps = 55/255 (21%)
Query: 14 DCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSR 73
CH +G G C C G+ CE G E +C D + S
Sbjct: 432 RDRSLCHGKGFLEC-GICRCDTGYIGKNCECQTQ---GRSSQELEGSCRKDNNSIICSGL 487
Query: 74 LFDSPVCGN---------GFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCN 124
VCG G + G+ C+C D+ N C C G C
Sbjct: 488 --GDCVCGQCLCHTSDVPGKLIYGQYCEC---DTINCERYNGQVCGGPGRGLCFCGKC-- 540
Query: 125 LETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEG----- 179
C P G C +C+ + C+ C+ G
Sbjct: 541 --RCHPGFEGSAC-----QCERTTEGCLNPRRVEC----SGRGRCRCNVCECHSGYQLPL 589
Query: 180 --SCRTHSDQCLLLW----------GPSASSSDKRCFDLNTSGN--RHGNCGYY-----K 220
C C GP + C L S N + C
Sbjct: 590 CQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCW 649
Query: 221 PNMTYAKCEEDKCNS 235
T + +
Sbjct: 650 VAYTLEQQDGMDRYL 664
Score = 48.6 bits (115), Expect = 7e-06
Identities = 34/178 (19%), Positives = 51/178 (28%), Gaps = 34/178 (19%)
Query: 18 NCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTEC----TCPSDRCIMAPSSR 73
+G+C G C CHPGF C+ L EC C + C
Sbjct: 528 GGPGRGLCFC-GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVC------- 579
Query: 74 LFDSPVCGNGFV-EDGEECDCGLEDSCKNACCNATTCMLNVNATCATG--------SCCN 124
C +G+ +EC C + C +C + G +C
Sbjct: 580 -----ECHSGYQLPLCQECPG-----CPSPCGKYISCAECL--KFEKGPFGKNCSAACPG 627
Query: 125 LETCQPHTAGRQCRAADR-ECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSC 181
L+ GR C+ D C + ++ + C G C E
Sbjct: 628 LQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAGPDGCGENLY 685
Score = 46.2 bits (109), Expect = 3e-05
Identities = 30/204 (14%), Positives = 50/204 (24%), Gaps = 27/204 (13%)
Query: 15 CPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGL-EHDTTECTCPSDRCIMAPSSR 73
N + + C G + + T + + CI S
Sbjct: 347 LDHNALPDTLKVT-YDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFV 405
Query: 74 LFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTA 133
+ V+ +C+C D + + C + G C C
Sbjct: 406 IRALGFTDIVTVQVLPQCECRCRDQ----SRDRSLC--HGKGFLECGIC----RCDTGYI 455
Query: 134 GRQCRAADRECDLPEFCTGD-SEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLW 192
G+ C EC + + C D + C G C G C C
Sbjct: 456 GKNC-----ECQTQGRSSQELEGSCRKDN---NSIICSGL-GDCVCGQC-----LCHTSD 501
Query: 193 GPSASSSDKRCFDLNTSGNRHGNC 216
P + C + R+
Sbjct: 502 VPGKLIYGQYCECDTINCERYNGQ 525
Score = 42.4 bits (99), Expect = 6e-04
Identities = 18/127 (14%), Positives = 28/127 (22%), Gaps = 27/127 (21%)
Query: 11 PVADCPFNCHDQGVCNSRGH-----CHCHPGFAPPYCEY-PGGHNLGLEHDTTECTCPSD 64
+ C+ RG C CH G+ P C+ PG + ++ +
Sbjct: 554 ERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECL--- 610
Query: 65 RCIMAPSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCA---TGS 121
G C N TC + C T
Sbjct: 611 --------------KFEKGPFGKNCSAACPGLQLSNN-PVKGRTCKERDSEGCWVAYTLE 655
Query: 122 CCNLETC 128
+
Sbjct: 656 QQDGMDR 662
Score = 34.7 bits (79), Expect = 0.11
Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 11 PVADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRC 66
P N C R C + + + + ++ EC D C
Sbjct: 626 PGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLI-YVDESRECVAGPDGC 680
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin;
1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB:
1bsw_A
Length = 197
Score = 54.2 bits (131), Expect = 2e-08
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS 71
HNLG+ HD C+C CIM+PS
Sbjct: 142 AHNLGVSHDEGSCSCGGKSCIMSPS 166
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex,
metal-binding, zinc-depending, metalloprotease,
metalloproteinase/inhibitor complex; HET: WR2; 1.05A
{Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A
3gbo_A
Length = 202
Score = 54.3 bits (131), Expect = 2e-08
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS 71
GHNLG+ HDT C+C + CIMA
Sbjct: 145 GHNLGIHHDTGSCSCGAKSCIMASV 169
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor
complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9
PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Length = 202
Score = 53.9 bits (130), Expect = 3e-08
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS 71
GHNLG+EHD +C + CIM P
Sbjct: 145 GHNLGMEHDGKDCLRGASLCIMRPG 169
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 53.3 bits (128), Expect = 1e-07
Identities = 38/139 (27%), Positives = 47/139 (33%), Gaps = 25/139 (17%)
Query: 12 VADCPFNCHDQGVCNSRGHCHCHPGFAPPYCE----YPGGHNLGLEHDTTECTCPS---- 63
A+CP C + G CN R C C GF P+CE P N GL C CP
Sbjct: 148 QAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYG 207
Query: 64 DRCIMAPSSRLFDSPVCGN-GFVEDGEECDCGL--------EDSCKNACCNATTCMLNVN 114
C + S C N G +C C C C N C+
Sbjct: 208 VNC-----DKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSK 262
Query: 115 ATCA---TGSCCNLETCQP 130
C+ G C+ C+P
Sbjct: 263 CKCSKGYQGDLCSKPVCEP 281
Score = 43.7 bits (103), Expect = 1e-04
Identities = 29/138 (21%), Positives = 39/138 (28%), Gaps = 39/138 (28%)
Query: 12 VADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGG----HNLGLEHDTTECTCPSDRCI 67
A+C C + G C G C C PG CE N G ++C C
Sbjct: 212 KANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSK---- 267
Query: 68 MAPSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLET 127
G+ G+ C + C+ C + TC + C
Sbjct: 268 ---------------GYQ--GDLCS---KPVCEPGCGA--------HGTCHEPNKC---Q 296
Query: 128 CQPHTAGRQCRAADRECD 145
CQ GR C
Sbjct: 297 CQEGWHGRHCNKRYEASL 314
Score = 37.5 bits (87), Expect = 0.010
Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 12 VADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTC-PSDRCIMAP 70
++ CP C + G C + C C G+ C P H TC ++C
Sbjct: 244 ISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAH----GTCHEPNKC---- 295
Query: 71 SSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCN 105
C G+ G C+ E S +
Sbjct: 296 --------QCQEGWH--GRHCNKRYEASLIGTKHH 320
Score = 30.2 bits (68), Expect = 2.1
Identities = 20/128 (15%), Positives = 29/128 (22%), Gaps = 23/128 (17%)
Query: 19 CHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPS----DRCIMAPSSRL 74
H V C + E +T T + C +
Sbjct: 97 PHKASVVQ--VGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTC-----QQA 149
Query: 75 FDSPVC-GNGFVEDGEECDCGL--------EDSCKNACCNATTCMLNVNATCA---TGSC 122
C GF + C+C + C C N C+ C G
Sbjct: 150 ECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVN 209
Query: 123 CNLETCQP 130
C+ C
Sbjct: 210 CDKANCST 217
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin,
snake venom proteinase; 2.20A {Deinagkistrodon acutus}
SCOP: d.92.1.9
Length = 197
Score = 49.6 bits (119), Expect = 5e-07
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS 71
GHNLG+ HD C+C + CIMAP
Sbjct: 144 GHNLGMNHDGAGCSCAT--CIMAPV 166
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 49.3 bits (118), Expect = 5e-07
Identities = 23/147 (15%), Positives = 35/147 (23%), Gaps = 20/147 (13%)
Query: 15 CPFNCHDQGVCNSRGHCHCHPGFAPPYCE-----YPGGHNLGLEHDTTECTCPS----DR 65
+ H G R C + C TC
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPE 62
Query: 66 CIMAPSSRLFDSPVCGNGFVEDGEECDC--GLEDSCKNACCNATTCMLNVNATCATGSCC 123
C A +G + +C C G + + C C V+ C C
Sbjct: 63 CNRAICR---QGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGC---VHGICNEPWQC 116
Query: 124 NLETCQPHTAGRQCRAADRECDLPEFC 150
C+ + G+ C C + C
Sbjct: 117 ---LCETNWGGQLCDKDLNYCGTHQPC 140
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 51.6 bits (123), Expect = 7e-07
Identities = 43/233 (18%), Positives = 58/233 (24%), Gaps = 51/233 (21%)
Query: 14 DCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSR 73
C++ G C C PG+ CE + D C S R
Sbjct: 443 PNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVC----SQR 498
Query: 74 LFDSPVCGN-----GFVED--GEECDC---GLEDSCKNACCNATTCMLNVNATCATGSCC 123
+CG G+ C+C C + C+ G C
Sbjct: 499 --GECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSG--------HGQCSCGDC- 547
Query: 124 NLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRT 183
C G C CT ++ C S +G C G C GSC
Sbjct: 548 ---LCDSDWTGYYCN-----------CTTRTDTCMSS----NGLLCSGR-GKCECGSCVC 588
Query: 184 HSDQCLLLWGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEEDKCNSN 236
C D + C K A +E+ CN
Sbjct: 589 IQPG----SYGDTCEKCPTCPD---ACTFKKECVECKKFDRGALHDENTCNRY 634
Score = 41.6 bits (97), Expect = 8e-04
Identities = 43/240 (17%), Positives = 60/240 (25%), Gaps = 43/240 (17%)
Query: 14 DCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSR 73
CP G C+ + C +
Sbjct: 405 GCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQA----EPNSHRCNNGNGTFEC--- 457
Query: 74 LFDSPVCGNGFVEDGEECD-CGLEDSCKNAC-CNATTCMLNVNATCATGSCCNLETCQPH 131
CG G++ EC S ++ C + + C G C C
Sbjct: 458 --GVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQC----VCHSS 511
Query: 132 TAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSD----- 186
G+ ++C D C GE C G C G C SD
Sbjct: 512 DFGKITG---------KYCECDDFSCVR----YKGEMCSGH-GQCSCGDCLCDSDWTGYY 557
Query: 187 -QCLLLWGPSASSSDKRCFDLNTSGN---RHGNCGYYKPNMTYAKCEEDKCNSNALTGHK 242
C SS+ C SG G+C +P CE+ +A T K
Sbjct: 558 CNCTTRTDTCMSSNGLLC-----SGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKK 612
Score = 41.2 bits (96), Expect = 0.001
Identities = 28/166 (16%), Positives = 39/166 (23%), Gaps = 34/166 (20%)
Query: 18 NCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFDS 77
C + V C + + C
Sbjct: 373 TCLNNEVIPGLKSCMGLKI---------------GDTVSFSIEAKVRGCPQEKEKSFTIK 417
Query: 78 PVCGNGF--VEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGR 135
PV V+ +CDC +C+ + N N T G C C P G
Sbjct: 418 PVGFKDSLIVQVTFDCDC----ACQAQAEPNSHRCNNGNGTFECGVC----RCGPGWLGS 469
Query: 136 QCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSC 181
QC EC ++ + C C C G C
Sbjct: 470 QC-----ECSEEDYRPSQQDECSPRE---GQPVCSQRGE-CLCGQC 506
Score = 36.6 bits (84), Expect = 0.032
Identities = 24/141 (17%), Positives = 32/141 (22%), Gaps = 45/141 (31%)
Query: 11 PVADCPFNCHDQGVCNSRGHCHC------HPGFAPPYCEYPGGHNLGLEHDTTECTCPSD 64
+ +C+ RG C C PG CE TCP
Sbjct: 561 TTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKC-------------PTCPDA 607
Query: 65 RCIMAPSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCN 124
C E +C + + A + TC N C
Sbjct: 608 ---------------CTFK----KECVEC--KKFDRGALHDENTC----NRYCRDEIESV 642
Query: 125 LETCQPHTAGRQCRAADRECD 145
E C + E D
Sbjct: 643 KELKDTGKDAVNCTYKN-EDD 662
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 48.5 bits (115), Expect = 2e-06
Identities = 26/131 (19%), Positives = 35/131 (26%), Gaps = 16/131 (12%)
Query: 13 ADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSS 72
+ CH +G G C C G+ CE G E +C D + S
Sbjct: 92 SRDRSLCHGKGFLEC-GICRCDTGYIGKNCECQTQ---GRSSQELEGSCRKDNNSIICSG 147
Query: 73 R---LFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNV---NATCATGSCCNLE 126
+ +C V + G C C + C G C
Sbjct: 148 LGDCVCGQCLCHTSDV--PGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKC---- 201
Query: 127 TCQPHTAGRQC 137
C P G C
Sbjct: 202 RCHPGFEGSAC 212
Score = 34.6 bits (79), Expect = 0.061
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 18 NCHDQGVCNSRGHCHCHPGFAPPYCEYP 45
+G+C G C CHPGF C++
Sbjct: 189 GGPGRGLCFC-GKCRCHPGFEGSACQHH 215
Score = 30.7 bits (69), Expect = 1.1
Identities = 23/128 (17%), Positives = 33/128 (25%), Gaps = 27/128 (21%)
Query: 90 ECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEF 149
EC C + ++ C G C C G+ C EC
Sbjct: 85 ECRCRDQSRDRSLCHG--------KGFLECGIC----RCDTGYIGKNC-----ECQTQGR 127
Query: 150 CTGDSEF-CPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLWGPSASSSDKRCFDLNT 208
+ + E C D + C G C G C C P + C
Sbjct: 128 SSQELEGSCRKDN---NSIIC-SGLGDCVCGQC-----LCHTSDVPGKLIYGQYCECDTI 178
Query: 209 SGNRHGNC 216
+ R+
Sbjct: 179 NCERYNGQ 186
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Length = 202
Score = 47.7 bits (114), Expect = 3e-06
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS 71
GHNLG+ HD +C D CIMAPS
Sbjct: 144 GHNLGMLHDD-GYSCDCDVCIMAPS 167
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG
MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB:
1r54_A*
Length = 214
Score = 47.4 bits (113), Expect = 5e-06
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 47 GHNLGLEHDTTECTC----PSDRCIMAPS 71
GH+LGL HD C S C+MA +
Sbjct: 145 GHSLGLSHDPDGCCVEAAAESGGCVMAAA 173
>2w9o_A Jerdostatin, short disintegrin jerdostatin; venom, toxin, cell
adhesion, blood coagulation; NMR {Trimeresurus jerdonii}
PDB: 2w9u_A
Length = 46
Score = 42.9 bits (101), Expect = 6e-06
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 117 CATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFK 163
C TG CC C+ AG C +CTG S CPS
Sbjct: 4 CTTGPCC--RQCKLKPAGTTCWRTSVSSH---YCTGRSCECPSYPGN 45
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase;
1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB:
1kui_A 1kuk_A 1kug_A 1wni_A
Length = 203
Score = 45.8 bits (109), Expect = 1e-05
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS 71
GHNLG+EHD C D CIM+
Sbjct: 147 GHNLGMEHDDK-DKCKCDTCIMSAV 170
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 47.1 bits (111), Expect = 2e-05
Identities = 46/191 (24%), Positives = 60/191 (31%), Gaps = 25/191 (13%)
Query: 17 FNCHDQGVCNSR-----GHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPS 71
F C D G C S G C G ++ + C +RCI P
Sbjct: 11 FQCQD-GKCISYKWVCDGSAECQDGSDESQETCL---SVTCKSGDFSCGGRVNRCI--PQ 64
Query: 72 SRLFDSPV-CGNGFVEDGEECDCGLEDS--CKNACCNATTCMLNVNATCATGS---CCNL 125
D V C NG E G +D C + C + + + + C GS C +
Sbjct: 65 FWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPV 124
Query: 126 ETCQPHT---AGRQCRAADRECDLPEFCTGDS-----EFCPSDVFKMDGETCKGGEAFCY 177
TC P + C CD C S VF+ D C E C
Sbjct: 125 LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCL 184
Query: 178 EGSCRTHSDQC 188
G C S +C
Sbjct: 185 SGECIHSSWRC 195
Score = 46.7 bits (110), Expect = 2e-05
Identities = 41/178 (23%), Positives = 52/178 (29%), Gaps = 42/178 (23%)
Query: 17 FNCHDQGVCNSR-----GHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPS 71
F CHD G C SR C G C C S CI P
Sbjct: 93 FRCHD-GKCISRQFVCDSDRDCLDGSDEASCPVL-------TCGPASFQCNSSTCI--PQ 142
Query: 72 SRLFDS-PVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQP 130
D+ P C +G E + C ++ C+A C +G C +
Sbjct: 143 LWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEF------HCLSGECIHSSWR-- 194
Query: 131 HTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQC 188
CD C SD TC+ E C +G+C S QC
Sbjct: 195 -------------CDGGPDCK-----DKSDEENCAVATCRPDEFQCSDGNCIHGSRQC 234
Score = 44.4 bits (104), Expect = 1e-04
Identities = 33/220 (15%), Positives = 49/220 (22%), Gaps = 21/220 (9%)
Query: 17 FNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFD 76
F C D + C E G N+ L + C S CI
Sbjct: 220 FQCSDGNCIHGSRQCDREYDCKDMSDEV-GCVNVTLCEGPNKFKCHSGECIT-------L 271
Query: 77 SPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQ 136
VC + DC C C G C ++
Sbjct: 272 DKVC------NMA-RDCRDWSDEPIKECGTNEC------LDNNGGCSHVCNDLKIGYECL 318
Query: 137 CRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLWGPSA 196
C + D P ++ G + C EG + G A
Sbjct: 319 CPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIA 378
Query: 197 SSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEEDKCNSN 236
++ PN+ + + SN
Sbjct: 379 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN 418
Score = 34.4 bits (78), Expect = 0.15
Identities = 20/126 (15%), Positives = 27/126 (21%), Gaps = 11/126 (8%)
Query: 12 VADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPS 71
DC + C + G C EC CP ++A
Sbjct: 278 ARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDL--------KIGYECLCPDGFQLVAQR 329
Query: 72 SRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPH 131
+ LE K C + A A GS L H
Sbjct: 330 RCEDIDECQDPD---TCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRH 386
Query: 132 TAGRQC 137
+
Sbjct: 387 EVRKMT 392
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 44.2 bits (104), Expect = 3e-05
Identities = 25/163 (15%), Positives = 40/163 (24%), Gaps = 11/163 (6%)
Query: 18 NCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECT-CPSDRCIMAPSSRLFD 76
C + C+ G+C + C+ C +++C F
Sbjct: 11 ECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFG 70
Query: 77 SPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQ 136
+ CG G D C C G C G
Sbjct: 71 AEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLC------CSQWGFC----GLGSEFCGGG 120
Query: 137 CRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEG 179
C++ D P C ++ +C G +C G
Sbjct: 121 CQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAG 163
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 45.9 bits (108), Expect = 3e-05
Identities = 35/206 (16%), Positives = 50/206 (24%), Gaps = 15/206 (7%)
Query: 19 CHDQGVCNSR-GHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFDS 77
C + GVC+ G C C PGF CE + C+
Sbjct: 205 CMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYG 264
Query: 78 PVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLET---CQPHTAG 134
C G+ G +C+ C + +C G C+ C P G
Sbjct: 265 CSCATGW--KGLQCNEACHPGFYGPDC-------KLRCSCNNGEMCDRFQGCLCSPGWQG 315
Query: 135 RQC-RAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLWG 193
QC R D S F + G E D +L
Sbjct: 316 LQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICK-ASGWPLPTNEEMTLVKPDGTVLHPK 374
Query: 194 PSASSSDKRCFDLNTSGNRHGNCGYY 219
+ + G +
Sbjct: 375 DFNHTDHFSVAIFTIHRILPPDSGVW 400
Score = 40.1 bits (93), Expect = 0.002
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 17/115 (14%)
Query: 18 NCHDQGVCNSRGHCHCHPGFAPPYCE--YPGGHNLGLEHDTTECTCPSDRCIMAPSSRLF 75
+C++ +C+ C C PG+ CE + S +
Sbjct: 294 SCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKF--------- 344
Query: 76 DSPVCG-NGF-VEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETC 128
+P+C +G+ + EE D + + + A + +
Sbjct: 345 -NPICKASGWPLPTNEEMTLVKPDGT---VLHPKDFNHTDHFSVAIFTIHRILPP 395
Score = 31.6 bits (71), Expect = 0.94
Identities = 28/141 (19%), Positives = 35/141 (24%), Gaps = 33/141 (23%)
Query: 19 CHDQGVCNSRGHCHCHPGFAPPYCEY--PGGHNLGLEHDTT-ECTCPSDRCIMAPSSRLF 75
C P C + N G+ H+ T EC CP
Sbjct: 175 NLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGECICPP------------ 222
Query: 76 DSPVCGNGFVEDGEECDCGLED-----SCKNACCNATTCMLNVNATCATGSCCNLETCQP 130
GF+ G C+ E +CK C C V C +C
Sbjct: 223 -------GFM--GRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGC----SCAT 269
Query: 131 HTAGRQCRAADRECDLPEFCT 151
G QC A C
Sbjct: 270 GWKGLQCNEACHPGFYGPDCK 290
Score = 30.1 bits (67), Expect = 2.8
Identities = 22/192 (11%), Positives = 36/192 (18%), Gaps = 50/192 (26%)
Query: 11 PVADCPFNCHDQGVCNSRG-------------HCHCHPGFAPPYCEYPGGHNLGLEHDTT 57
F + C+ + C C G+ C
Sbjct: 232 ACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKL 291
Query: 58 ECTC-------PSDRCIMAPSSRLFDSPVCGNGFVEDGEECD-CGLEDSCKNACCNATTC 109
C+C C +C G+ G +C+ G+
Sbjct: 292 RCSCNNGEMCDRFQGC------------LCSPGW--QGLQCEREGIPRMTPKIVDLPDHI 337
Query: 110 MLNVNA---TCA----TGSCCNLETCQ----PHTAGRQCRAADR----ECDLPEFCTGDS 154
+N C T + D + DS
Sbjct: 338 EVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDS 397
Query: 155 EFCPSDVFKMDG 166
V + G
Sbjct: 398 GVWVCSVNTVAG 409
Score = 29.7 bits (66), Expect = 3.9
Identities = 21/139 (15%), Positives = 30/139 (21%), Gaps = 17/139 (12%)
Query: 26 NSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFDSPVCGNGFV 85
S H + + + + + C
Sbjct: 137 GSFIHSVPRHEVPDILEVH--LPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKW 194
Query: 86 EDGEECDCGLEDSCKNACCNATTCMLNVNA-TCA---TGSCCNLETCQPHTAGRQCRAAD 141
C AC N C + C G C + C+ HT GR C+
Sbjct: 195 GPECNHLC-------TACMNNGVCHEDTGECICPPGFMGRTCE-KACELHTFGRTCK--- 243
Query: 142 RECDLPEFCTGDSEFCPSD 160
C E C P
Sbjct: 244 ERCSGQEGCKSYVFCLPDP 262
Score = 28.9 bits (64), Expect = 7.3
Identities = 10/89 (11%), Positives = 20/89 (22%), Gaps = 5/89 (5%)
Query: 56 TTECTCPSDRCIMAPSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNA 115
D I S + P + + +D+ + +
Sbjct: 122 KKVLIKEEDAVIYKNGSFIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFT--- 178
Query: 116 TCATGSCCNLETCQPHTAGRQCRAADREC 144
+ T C+ G +C C
Sbjct: 179 SAFTRLIVR--RCEAQKWGPECNHLCTAC 205
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 43.8 bits (102), Expect = 5e-05
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 10 MPVADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYP 45
A+CP C + G CN R C C GF P+CE
Sbjct: 146 CQQAECPGGCRNGGFCNERRICECPDGFHGPHCEGT 181
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo
sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Length = 217
Score = 43.6 bits (103), Expect = 7e-05
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 47 GHNLGLEHDTTE-----CTCPSDRCIMAPSSRLFDSP 78
GH LGL HD ++ D+ +M+ D+
Sbjct: 150 GHLLGLSHDDSKFCEETFGSTEDKRLMSSILTSIDAS 186
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat,
inflammation, alpha/beta motif, metalloproteinas
allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo
sapiens}
Length = 208
Score = 43.5 bits (103), Expect = 8e-05
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 47 GHNLGLEHD--TTECTCP----SDRCIMAPS 71
GHNLG++HD C C + RCIMA S
Sbjct: 142 GHNLGMDHDENVQGCRCQERFEAGRCIMAGS 172
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-04
Identities = 48/268 (17%), Positives = 89/268 (33%), Gaps = 96/268 (35%)
Query: 298 TPPKVPSDAQITPIRAAPKIPATSVRLSADFANFSA------------------TLPP-E 338
TP ++ S + + + A ++ + + +F P
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 339 LPPAN-----KGPNTSPYARPLISSPILS--DTTSQTVRELIDAKNAESTRQTTRPASVA 391
LPP+ + P SP+LS + T + V++ ++ N+ + ++
Sbjct: 319 LPPSILEDSLENNEGVP-------SPMLSISNLTQEQVQDYVNKTNSHL--PAGKQVEIS 369
Query: 392 KSSTL-----------PPVATESNALPG--STLHPVSSESNAPKGSTLNRITSFMSRNST 438
L PP +L G TL AP G +RI F R
Sbjct: 370 ----LVNGAKNLVVSGPPQ-----SLYGLNLTLRKAK----APSGLDQSRIP-FSER--- 412
Query: 439 RRNSKVLTPPATQGSARSLEISEPI--PLNNLRDNEDKVDMVKRTQSMRETDVNFKRPNL 496
K+ + S R L ++ P L L D ++ + + + +V+F ++
Sbjct: 413 ----KL------KFSNRFLPVASPFHSHL--LVPASDLIN-----KDLVKNNVSFNAKDI 455
Query: 497 --PAF----GS-MRAKRPTSLAGSQRPS 517
P + GS +R L+GS
Sbjct: 456 QIPVYDTFDGSDLR-----VLSGSISER 478
Score = 42.7 bits (100), Expect = 5e-04
Identities = 70/475 (14%), Positives = 139/475 (29%), Gaps = 161/475 (33%)
Query: 278 THKSSDMSVKLPT---------RAAPVKPTPPKVPSDAQITPIRAAPKIPATSVRLSADF 328
+H S + + +PT + K P P++ AA P T L F
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPE--PTEGF-----AADDEPTTPAELVGKF 64
Query: 329 ANFSATLPPELPPANKGPNTSPYARPLISSPILSDTTSQTVRELIDAKNAESTRQTTRPA 388
+ ++ + P+ G Q + +
Sbjct: 65 LGYVSS---LVEPSKVGQ------------------FDQVLNLCLT-------------- 89
Query: 389 SVAKSSTLPPVATESNALPGSTLHPVSSESNAPKGSTLNR----ITSF------MSRNST 438
E+ L G+ +H ++++ +TL + I ++ R
Sbjct: 90 -----------EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 439 RRNSKVLTPPATQGSARSLEI------SEPIPLNNLRDNEDKVDMVKRTQSMRETDVNFK 492
++++ L +G+A+ + I ++ LRD + +T
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDD-YFEELRD-------------LYQTY---- 180
Query: 493 RPNLPAFGSMRAKRPTSLAGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGY 552
+ A+ + L + G+ L +NP + TP Y
Sbjct: 181 HVLVGDLIKFSAETLSEL--IRTTLDAEKVFTQGLNILEWLENP---SNTPD-----KDY 230
Query: 553 QNHSAGQAKTPSGIESLPG---YQNPSAGQ----AKTPG-TPG------QGLLGPGQGLG 598
I S P Q AK G TPG +G G QGL
Sbjct: 231 LLSIP--------I-SCPLIGVIQ---LAHYVVTAKLLGFTPGELRSYLKGATGHSQGL- 277
Query: 599 YQNPAVPPGKPKTYDDCLNLLSESMAALANV-----DHNPNDNIYA-VIEESPATSD--- 649
AV + +++ + +++ L + + PN ++ ++E+S ++
Sbjct: 278 --VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 650 ---LGLLG----EIVSEIQARNTESIYSSQSLMDTNKLYM---NTRDLDNVSPDP 694
L + ++ + N L ++ + N VS P
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTN-------SHLPAGKQVEISLVNGAKNLVVSGPP 383
Score = 42.3 bits (99), Expect = 6e-04
Identities = 51/345 (14%), Positives = 97/345 (28%), Gaps = 122/345 (35%)
Query: 384 TTRPASVAKSSTLPPVATESNALPGSTLHPVSSESNAPKGSTLNRITSFMSRNSTRRNSK 443
+TRP +++ S +P + ++S+ F +K
Sbjct: 5 STRPLTLSHGSL-----EHVLLVP-TASFFIASQLQE----------QF---------NK 39
Query: 444 VLTPPATQGSARSLEISEPIPL-----NNLRDNEDKVDMVKRTQSMRETDVNFKRPNLPA 498
+L P T+G A E + P L + + + + Q + F+
Sbjct: 40 IL-PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN----C 94
Query: 499 FGSMRAKRPTSLAGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGYQNHSAG 558
+ + +LA L +N KT I++
Sbjct: 95 Y--LEGNDIHALAA----------------KLLQ-ENDTTLVKTKELIKNY--ITARIMA 133
Query: 559 QAKTPSGIES-LPGYQNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKPKTYDDCLN 617
+ S L ++ G A+ + G GQG DD
Sbjct: 134 KRPFDKKSNSAL--FRAVGEGNAQL-----VAIFG-GQG--------------NTDDYFE 171
Query: 618 LLSESMAALANVDHNPNDNIYAVIEESPATSDLGLLGEIVSEIQARNTESIYSSQSLMDT 677
L + +Y + L+G+++ +E ++ +D
Sbjct: 172 ELRD---------------LY---QTYH-----VLVGDLIKFSAETLSE---LIRTTLDA 205
Query: 678 NKLYMNTRD----LDNVSPDPTIKSTTSSGYLS------P-IGIT 711
K++ + L+N S P YL P IG+
Sbjct: 206 EKVFTQGLNILEWLENPSNTP------DKDYLLSIPISCPLIGVI 244
Score = 32.7 bits (74), Expect = 0.57
Identities = 44/315 (13%), Positives = 86/315 (27%), Gaps = 119/315 (37%)
Query: 237 ALTGHKVAKSTQNHSNSTSG--GRGQRLLS------SGEGQNYNLLAAKTHKSSDMSVKL 288
+T + + + G G Q L++ + +++ + K + +
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-------ITV 302
Query: 289 -------PTRAAPVKPTPPKVPSDAQITPIRAAPKIPATSVR------LSADFANFSATL 335
A P PP + D+ + P P S+ + ++ L
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDS-LENNEGVPS-PMLSISNLTQEQVQDYVNKTNSHL 360
Query: 336 PPE------L-----------PP--------------ANKGPNTS--PYA-RPL------ 355
P L PP A G + S P++ R L
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 356 --IS----SPILSDTTSQTVRELIDAKNAESTRQTTRPASVAKSSTLP-PV-ATESNA-- 405
++ S +L + ++L + + + PV T +
Sbjct: 421 LPVASPFHSHLLVPASDLINKDL------------VKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 406 --LPGSTLH---------PVSSESNAPKGST---------LNRITSFMSRNSTRRNSKVL 445
L GS PV E+ +T + + RN +V+
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Query: 446 TPPATQGSARSLEIS 460
A +L+I+
Sbjct: 529 -------VAGTLDIN 536
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 43.3 bits (101), Expect = 3e-04
Identities = 45/192 (23%), Positives = 61/192 (31%), Gaps = 27/192 (14%)
Query: 17 FNCHD------QGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAP 70
F C D + VC+ C + C + C +RCI P
Sbjct: 29 FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKS-----GDFSCGGRVNRCI--P 81
Query: 71 SSRLFDSPV-CGNGFVEDGEECDCGLEDS--CKNACCNATTCMLNVNATCATGS---CCN 124
D V C NG E G +D C + C + + + + C GS C
Sbjct: 82 QFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCP 141
Query: 125 LETCQPHT---AGRQCRAADRECDLPEFCTGDSEFCPSD-----VFKMDGETCKGGEAFC 176
+ TC P + C CD C S+ P VF+ D C E C
Sbjct: 142 VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC 201
Query: 177 YEGSCRTHSDQC 188
G C S +C
Sbjct: 202 LSGECIHSSWRC 213
Score = 42.5 bits (99), Expect = 5e-04
Identities = 37/236 (15%), Positives = 57/236 (24%), Gaps = 18/236 (7%)
Query: 9 SMPVADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIM 68
S P + F+C +S C P E E C CI
Sbjct: 191 SSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPD---EFQCSDGNCI- 246
Query: 69 APSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNA-CCNATTCML-----NVNATCATGS- 121
S + C + D C N C++ C+ N+ C S
Sbjct: 247 HGSRQCDREYDCKDM--SDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSD 304
Query: 122 ----CCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCY 177
C C + G D + E D + D + C+ +
Sbjct: 305 EPIKECGTNECLDNNGGCSHVCNDLKIG-YECLCPDGFQLVAQRRCEDIDECQDPDTCSQ 363
Query: 178 EGSCRTHSDQCLLLWGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEEDKC 233
+C G K C + + + MT + E
Sbjct: 364 LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL 419
Score = 42.1 bits (98), Expect = 6e-04
Identities = 34/239 (14%), Positives = 61/239 (25%), Gaps = 16/239 (6%)
Query: 17 FNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFD 76
F C D + C E N+ L + C S CI
Sbjct: 238 FQCSDGNCIHGSRQCDREYDCKDMSDEVGC-VNVTLCEGPNKFKCHSGECITL------- 289
Query: 77 SPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQ 136
VC + DC C C+ N N C+ +
Sbjct: 290 DKVC------NMA-RDCRDWSDEPIKECGTNECLDN-NGGCSHVCNDLKIGYECLCPDGF 341
Query: 137 CRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLWGPSA 196
A R C+ + C V G C+ E F + + + +
Sbjct: 342 QLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT 401
Query: 197 SSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEEDKCNSNALTGHKVAKSTQNHSNSTS 255
+ + R L+ S + ++ + L+ + + + ++ S
Sbjct: 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 460
Score = 41.7 bits (97), Expect = 9e-04
Identities = 41/178 (23%), Positives = 53/178 (29%), Gaps = 42/178 (23%)
Query: 17 FNCHDQGVCNSR-----GHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPS 71
F CHD G C SR C G C C S CI P
Sbjct: 111 FRCHD-GKCISRQFVCDSDRDCLDGSDEASCPVL-------TCGPASFQCNSSTCI--PQ 160
Query: 72 SRLFDS-PVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQP 130
D+ P C +G E + C ++ C+A C +G C +
Sbjct: 161 LWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEF------HCLSGECIH------ 208
Query: 131 HTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQC 188
+ CD C SD TC+ E C +G+C S QC
Sbjct: 209 ---------SSWRCDGGPDCK-----DKSDEENCAVATCRPDEFQCSDGNCIHGSRQC 252
Score = 37.9 bits (87), Expect = 0.013
Identities = 35/171 (20%), Positives = 48/171 (28%), Gaps = 24/171 (14%)
Query: 31 CHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFD-SPVCGNGFVEDGE 89
G +G + E C +CI + D S C +G E E
Sbjct: 5 LRWTVAL----LLAAAGTAVGDRCERNEFQCQDGKCI--SYKWVCDGSAECQDGSDESQE 58
Query: 90 ECDCGLEDSCKNACCNATT-CML-----NVNATCATGS---CCNLETCQPHTAGRQCRAA 140
C S +C C+ + C GS C +TC + R
Sbjct: 59 TCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQD----EFRCH 114
Query: 141 DREC-DLPEFCTGDSEFCP--SDVFKMDGETCKGGEAFCYEGSCRTHSDQC 188
D +C C D + C SD TC C +C C
Sbjct: 115 DGKCISRQFVCDSDRD-CLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 164
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 4e-04
Identities = 52/382 (13%), Positives = 105/382 (27%), Gaps = 127/382 (33%)
Query: 350 PYARPLISSPILSDTTSQTVR--ELIDAKNAES-TRQTTRPASVA--------------- 391
PY L+ +L + V+ + +A N TTR V
Sbjct: 242 PYENCLL---VLLN-----VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 392 --------------------KSSTLPPVATESN----ALPGSTLHPVSSESNAPKGSTLN 427
+ LP +N ++ ++ + + K +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 428 RITSFMSRNSTRRNS-KVLTPPATQGSARSLEI---SEPIPL-------NNLRDNEDKVD 476
++T+ + S VL P + L + S IP ++ ++ V
Sbjct: 354 KLTTIIES------SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 477 MVK-RTQSMRETDVNFKRPNLPA-FGSMRAKRPTSLAGSQR------------PSQPPPP 522
+ K S+ E ++P+ + ++ K A + PP
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 523 APSGIQSLPGYQNPAGQAKTPSGIQSLPGYQNH--SAGQAKTPSGIESLPGYQNPSAGQA 580
L Y S G+ H + + + + + + +
Sbjct: 468 ------YLDQY------------FYSHIGH--HLKNIEHPERMTLFRMV--FLDFRFLEQ 505
Query: 581 K-----TPGTPGQGLLGPGQGLGYQNPAVPPGKPKTYD----DCLNLLSESMAALANVDH 631
K T +L Q L + P + P Y+ L+ L + L +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP-KYERLVNAILDFLPKIEENLICSKY 564
Query: 632 ---------NPNDNIYAVIEES 644
++ I+ EE+
Sbjct: 565 TDLLRIALMAEDEAIF---EEA 583
Score = 38.3 bits (88), Expect = 0.009
Identities = 65/388 (16%), Positives = 111/388 (28%), Gaps = 112/388 (28%)
Query: 56 TTECTCPSDRCIMAPSS-----RLFDSPVCGNG------FVEDGEECDCG-LEDSCKNAC 103
E D IM+ + RLF + + FVE+ + L K
Sbjct: 48 KEEI----DHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 104 CNATTCMLNVNATCATGSCCNLETCQPHTAGR-QCRAADRECDLPEFCTGDSEFCPSD-- 160
+ M + + + + R Q R+ L E P+
Sbjct: 103 -RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-L-------LELRPAKNV 153
Query: 161 -VFKMDG--ETCKGGEAFCYEGSCRTHSDQCLL----LWGPSASSSDKRCFDLNTSGNRH 213
+ + G +T + C ++ QC + W LN
Sbjct: 154 LIDGVLGSGKTWVALDV------CLSYKVQCKMDFKIFW-------------LNL----- 189
Query: 214 GNCGYYKPN----MTYAKCEEDKCNSNALTGHKVAKSTQNHSNSTSGGRGQRLLSSGEGQ 269
NC P M + N + + H + + + +S +RLL S +
Sbjct: 190 KNCN--SPETVLEMLQKLLYQIDPNWTSRSDH--SSNIKLRIHSIQA-ELRRLLKS---K 241
Query: 270 NYN--LL------AAKTHKSSDMSVK--LPTRAAPVKPTPPKVPSDAQITPIRAAPKIPA 319
Y LL AK + ++S K L TR V +D +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--------TDFLSAATTTHISLDH 293
Query: 320 TSVRLSAD-----FANFSATLPPELPP-ANKGPNTSPYARPLISSPILSD--TTSQTVRE 371
S+ L+ D + P +LP +P +I+ + D T +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NPRRLSIIAE-SIRDGLATWDNWKH 349
Query: 372 L-IDAKNAESTRQTTRPASVAKSSTLPP 398
+ D T +S+ L P
Sbjct: 350 VNCDKLT------TIIESSLNV---LEP 368
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 42.1 bits (98), Expect = 6e-04
Identities = 12/99 (12%), Positives = 20/99 (20%)
Query: 511 AGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGYQNHSAGQAKTPSGIESLP 570
Q+P+Q PP + Q + + +
Sbjct: 21 TPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80
Query: 571 GYQNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKP 609
+ P Q + G Q P P
Sbjct: 81 NDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAP 119
Score = 42.1 bits (98), Expect = 7e-04
Identities = 13/100 (13%), Positives = 20/100 (20%), Gaps = 5/100 (5%)
Query: 511 AGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPS-GIQSLPGYQNHSAGQAKTPSGIESL 569
+ Q P Q +P A G+ + Q TP+
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ---- 66
Query: 570 PGYQNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKP 609
+ + Y P VP
Sbjct: 67 EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMG 106
Score = 39.8 bits (92), Expect = 0.003
Identities = 15/98 (15%), Positives = 21/98 (21%), Gaps = 7/98 (7%)
Query: 512 GSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGYQNHSAGQAKTP--SGIESL 569
+ P G Q P S GQ P + S+
Sbjct: 2 SHHKKRVYPQAQLQ-----YGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSM 56
Query: 570 PGYQNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPG 607
Q + Q + Q + P V P
Sbjct: 57 GQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN 94
Score = 39.8 bits (92), Expect = 0.004
Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 4/107 (3%)
Query: 507 PTSLAGSQRPSQPPPPAPSGIQSLP----GYQNPAGQAKTPSGIQSLPGYQNHSAGQAKT 562
P P Q P A + G GQ + + Q Q A +
Sbjct: 22 PLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMN 81
Query: 563 PSGIESLPGYQNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKP 609
+ ++P + Q + P G L Q + P
Sbjct: 82 DMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAM 128
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 41.0 bits (95), Expect = 8e-04
Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 21/83 (25%)
Query: 13 ADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSS 72
+ CH +G G C C G+ CE G E +C D
Sbjct: 192 SRDRSLCHGKGFLEC-GICRCDTGYIGKNCECQTQ---GRSSQELEGSCRKDN------- 240
Query: 73 RLFDSPVC-GNGFVEDGEECDCG 94
+S +C G G +C CG
Sbjct: 241 ---NSIICSGLG------DCVCG 254
Score = 28.7 bits (63), Expect = 7.2
Identities = 26/145 (17%), Positives = 40/145 (27%), Gaps = 32/145 (22%)
Query: 61 CPSDRCIMAPSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATG 120
C ++ + + D V EC C + ++ C + G
Sbjct: 159 CIQEQSFVIRALGFTDIVTVQ---VLPQCECRCRDQSRDRSLC--------HGKGFLECG 207
Query: 121 SCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEF-CPSDVFKMDGETCKG-GEAFCYE 178
C C G+ C EC + + E C D + C G G+ C
Sbjct: 208 IC----RCDTGYIGKNC-----ECQTQGRSSQELEGSCRKD---NNSIICSGLGD--CVC 253
Query: 179 GSCRTHSDQCLLLWGPSASSSDKRC 203
G C C P + C
Sbjct: 254 GQC-----LCHTSDVPGKLIYGQYC 273
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 41.6 bits (96), Expect = 0.001
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 5 ALRASMPVADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPG 46
A+ C C+ G C + C C PG++ P C+
Sbjct: 178 AIDNVYIGPQCEEMCYGHGSCINGTKCICDPGYSGPTCKIST 219
Score = 37.3 bits (85), Expect = 0.019
Identities = 12/57 (21%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 5 ALRASMPVADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTC 61
A+ C C G C G C C + YC+ P D
Sbjct: 527 AIDNVYIGDGCLDMCSGHGRCVQ-GSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAP 582
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 39.2 bits (90), Expect = 0.001
Identities = 23/145 (15%), Positives = 35/145 (24%), Gaps = 7/145 (4%)
Query: 18 NCHDQGVC-NSRGH--CHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRL 74
G H C C+ G N +CI P
Sbjct: 11 TICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQ 70
Query: 75 FDSP--VCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHT 132
+ C G+ E C L+ C + C++ + + C P+
Sbjct: 71 VNMYXCGCIEGYT--LXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNP 128
Query: 133 AGRQCRAADRECDLPEFCTGDSEFC 157
E C D+E C
Sbjct: 129 EDEXXCTXTGETACQLXCNTDNEVC 153
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 38.5 bits (89), Expect = 0.008
Identities = 36/214 (16%), Positives = 53/214 (24%), Gaps = 34/214 (15%)
Query: 11 PVADCPFNCHDQGVCNSRGH-------CHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPS 63
P D NCH C GH C C G+A G G + D +
Sbjct: 104 PCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGD------GLICGEDSDLDGWPNLN 157
Query: 64 DRCIMAPSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCC 123
C + + G+ D+C + N +
Sbjct: 158 LVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVT----DEKDNCQLLF 213
Query: 124 NLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEG-SCR 182
N D D + C D D + +G
Sbjct: 214 NPRQADYDK--------DEVGDRCDNCPYVHNPAQID---TDNNGEGDACSVDIDGDDVF 262
Query: 183 THSDQCLLLWGPSASSSDKRCFDLNTSGNRHGNC 216
D C P ++D+R D + G+ NC
Sbjct: 263 NERDNC-----PYVYNTDQRDTDGDGVGDHCDNC 291
Score = 31.1 bits (70), Expect = 1.3
Identities = 16/125 (12%), Positives = 31/125 (24%), Gaps = 4/125 (3%)
Query: 14 DCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGL-EHDTTECTCPSDRCIMAPSS 72
+ G+ ++ + G N ++D E D C +
Sbjct: 179 SGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNP 238
Query: 73 RLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHT 132
D+ G G + + + N T + T G + + C
Sbjct: 239 AQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRD---TDGDGVGDHCDNCPLVH 295
Query: 133 AGRQC 137
Q
Sbjct: 296 NPDQT 300
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 38.3 bits (88), Expect = 0.009
Identities = 17/129 (13%), Positives = 28/129 (21%), Gaps = 28/129 (21%)
Query: 25 CNSRGHCHCHPGFAPPYCEY--PGGHNLGLEHDT-------TECTCPSDRCIMAPSSRLF 75
NS+ C C P C + C + +
Sbjct: 309 DNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDN 368
Query: 76 DSPVC-GNGFVEDGEECDC-----GLE-DSCKNACCNATTCMLNVNATCATGSCCNLETC 128
+ C G + C C G+ + + C A +C +G
Sbjct: 369 ELLHCQNGGTCHNNVRCLCPAAYTGILCEKLR--CEEAGSC------GSDSGQG----AP 416
Query: 129 QPHTAGRQC 137
T
Sbjct: 417 PHGTHHHHH 425
Score = 37.9 bits (87), Expect = 0.009
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 14 DCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLG-LEHDTTECTCP 62
+ +C + G C++ C C + CE G D+ + P
Sbjct: 368 NELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQGAPP 417
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 37.5 bits (86), Expect = 0.012
Identities = 28/150 (18%), Positives = 40/150 (26%), Gaps = 20/150 (13%)
Query: 13 ADCPFNCHDQGVCNSRGHCHCHP---GFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMA 69
++ D + C CH P +H+T +C DRC
Sbjct: 251 RRYYYSIKDISIGGR---CVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSC--DRCCPG 305
Query: 70 PSSRLFDSPVCGNGFVEDGEECDCGLED-SCKNACCNATTCMLNVNATCATGSCCNLETC 128
+ + + + C D N G C + C
Sbjct: 306 FNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLD---C 362
Query: 129 QPHTAGRQC--------RAADRECDLPEFC 150
Q HT G C RA D+ D P C
Sbjct: 363 QHHTTGINCERCLPGFFRAPDQPLDSPHVC 392
Score = 28.3 bits (62), Expect = 8.7
Identities = 22/142 (15%), Positives = 38/142 (26%), Gaps = 30/142 (21%)
Query: 92 DCGLEDSCKNACCN--ATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEF 149
D + C C+ A C + C CQ +T G C
Sbjct: 259 DISIGGRCV---CHGHADVCDAK-DPLDPFRLQCA---CQHNTCGGSC------------ 299
Query: 150 CTGDSEFCPSDVFKMDGETCKGGEAF-CYEGSCRTHSDQCLLLWGPSASSSDKRCFDLNT 208
+ C + + A C +C H+ C + + ++
Sbjct: 300 -----DRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQ 354
Query: 209 SGNRHGNCGYYKPNMTYAKCEE 230
G +C + + T CE
Sbjct: 355 GGGVCLDC---QHHTTGINCER 373
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 37.1 bits (85), Expect = 0.017
Identities = 24/177 (13%), Positives = 40/177 (22%), Gaps = 2/177 (1%)
Query: 433 MSRNSTRRNSKVLTPPATQGSARSLEISEPIPLNNLRDNEDKVDMVKRTQSMRETDVNFK 492
+S P+ L + + +++ +
Sbjct: 200 RDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSV 259
Query: 493 RPNLPAFGSMRAKRPTSLAGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGY 552
K TS G+ P P + PG P G
Sbjct: 260 SQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWN--PGRPEPGSAGTWNPGRPEPGSA 317
Query: 553 QNHSAGQAKTPSGIESLPGYQNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKP 609
+ G+ + S PG P + PG P G G + + P
Sbjct: 318 GTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSS 374
Score = 36.0 bits (82), Expect = 0.035
Identities = 29/178 (16%), Positives = 41/178 (23%), Gaps = 8/178 (4%)
Query: 443 KVLTPPATQGSARSLEISEPIPLNNLRDNEDKVDMVKRTQSMRETDVNFKRPNLPAFGSM 502
K Q A +L S I + V R + + + L
Sbjct: 182 KNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQT 241
Query: 503 RAKRPTSLAGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGYQNHSAGQAKT 562
+ T P + G + G+ +
Sbjct: 242 KMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEP 301
Query: 563 PSGIESLPGYQNPSAGQAKTPGTPGQGLLGPGQ-------GLGYQNPAVP-PGKPKTY 612
S PG P + PG P G G G NP P PG T+
Sbjct: 302 GSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTW 359
Score = 32.9 bits (74), Expect = 0.40
Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 3/101 (2%)
Query: 513 SQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGYQNHSAGQAKTPSGIESLPGY 572
S P S +Q P + + + G H+ G +
Sbjct: 211 STITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGD---SVSQGTGLAP 267
Query: 573 QNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKPKTYD 613
+P + G G GPG + PG T++
Sbjct: 268 GSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWN 308
>1mpz_A Obtustatin; disintegrin, hydrolase; NMR {Macrovipera lebetina
obtusa} SCOP: g.20.1.1 PDB: 2w9w_A 2w9v_A
Length = 41
Score = 32.6 bits (74), Expect = 0.020
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 117 CATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSD 160
C TG CC C+ AG C +CTG S CP
Sbjct: 1 CTTGPCC--RQCKLKPAGTTCWKTSLTSH---YCTGKSCDCPLY 39
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 36.2 bits (83), Expect = 0.035
Identities = 30/142 (21%), Positives = 43/142 (30%), Gaps = 27/142 (19%)
Query: 14 DCPFNCHDQGVCNSR-GHCHCHPGFAPPYCEY--PGGHNLGLEHDTTECTCPSDRCIMAP 70
+ + G C C C+ G ++L E C S C
Sbjct: 391 GGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAED---PYGCKSCACNPLG 447
Query: 71 SSRLFDSP-------VCGNGFVEDGEECD-CGLE---DSCKNACCNATTCMLN--VNATC 117
+ + C G+ CD C + S C C L +N +C
Sbjct: 448 TIPGGNPCDSETGYCYCKRLVT--GQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSC 505
Query: 118 --ATGSCCNLETCQPHTAGRQC 137
+G C +C PH GRQC
Sbjct: 506 SEDSGQC----SCLPHMIGRQC 523
Score = 32.4 bits (73), Expect = 0.61
Identities = 30/190 (15%), Positives = 45/190 (23%), Gaps = 46/190 (24%)
Query: 15 CPFNCHDQGVCN-SRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSR 73
P + ++ V GHC C CE
Sbjct: 264 APVDGVNEEVEGMVHGHCMCRHNTKGLNCELC---------------MDF---------- 298
Query: 74 LFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTA 133
D P C + ++ C+ + + G C N CQ +T
Sbjct: 299 YHDLPWRPAEGRNSNACKKC--NCNEHSSSCHFDMAVFLATGNVSGGVCDN---CQHNTM 353
Query: 134 GRQC--------RAADRECDLPEFC-------TGDSEFCPSDVFKMDGETCKGGEAFCYE 178
GR C + +R+ P C G D + G+ C
Sbjct: 354 GRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKL 413
Query: 179 GSCRTHSDQC 188
D C
Sbjct: 414 HVEGERCDVC 423
Score = 30.0 bits (67), Expect = 2.8
Identities = 23/129 (17%), Positives = 33/129 (25%), Gaps = 28/129 (21%)
Query: 19 CHDQGVCNS-RGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFDS 77
+ Q R C P P GG G + + +C
Sbjct: 363 FYFQHPERDIRDPNLCEPCTCDPAGSENGGICDG--YTDFSVGLIAGQCRCKLHVEGERC 420
Query: 78 PVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLET---------C 128
VC GF + E G CK+ CN G+ C
Sbjct: 421 DVCKEGFYDLSAEDPYG----CKSCACNPL------------GTIPGGNPCDSETGYCYC 464
Query: 129 QPHTAGRQC 137
+ G++C
Sbjct: 465 KRLVTGQRC 473
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 34.6 bits (80), Expect = 0.045
Identities = 18/97 (18%), Positives = 22/97 (22%), Gaps = 16/97 (16%)
Query: 18 NCHDQGVC-NSRG--HCHCHPGFAPPYCEYPGGHNLGLE-HDTTECTCPSD-RCIMAPSS 72
G C N+ G C C P F + + DT C D R
Sbjct: 10 TTCISGNCVNTPGSYICDCPPDFE--------LNPTRVGCVDTRSGNCYLDIRPRGDNGD 61
Query: 73 RLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTC 109
G C C L + C
Sbjct: 62 TACS---NEIGVGVSKASCCCSLGKAWGTPCEMCPAV 95
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A*
3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A*
3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A*
3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Length = 257
Score = 35.2 bits (80), Expect = 0.050
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 47 GHNLGLEHDTT---ECTCPSD---RCIMAPSSRLFDSP 78
GHN G EHD EC D + +M P + D
Sbjct: 191 GHNFGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHE 228
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 35.2 bits (80), Expect = 0.078
Identities = 33/235 (14%), Positives = 51/235 (21%), Gaps = 28/235 (11%)
Query: 14 DCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSR 73
+ + ++ C + TT + RC +
Sbjct: 129 LILDAVSNNYIVGNKPPKEC------GDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQ 182
Query: 74 LFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCM----LNVNATCATGSCCNLETCQ 129
CG + EC +A N T C+ C + C
Sbjct: 183 KMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVC-------VPACP 235
Query: 130 PHT---AGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGE---TCKGGEAFCYEGSCRT 183
P+T G +C + D DGE C G S
Sbjct: 236 PNTYRFEGWRC----VDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYC 291
Query: 184 HSDQCLLLWGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEEDKCNSNAL 238
+ D TS C +K N+ + S
Sbjct: 292 IP-CEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRRGNNIASELE 345
Score = 34.8 bits (79), Expect = 0.095
Identities = 27/205 (13%), Positives = 54/205 (26%), Gaps = 15/205 (7%)
Query: 60 TCPSDRCIMAPSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCAT 119
S+ I+ +C E + + C C +TC
Sbjct: 132 DAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGK 191
Query: 120 GSC-CNLETCQPHTAGRQCRAADRECDLPEFCTGDSEF---------CPSDVFKMDGETC 169
+C N E C P +C + D C + CP + ++ +G C
Sbjct: 192 RACTENNECCHP-----ECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRC 246
Query: 170 KGGEAFCYEGSCRTHSDQCLLLWGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCE 229
+ S + + ++ F N S + + + +
Sbjct: 247 VDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEK 306
Query: 230 EDKCNSNALTGHKVAKSTQNHSNST 254
+ K + + + T N
Sbjct: 307 KTKTIDSVTSAQMLQGCTIFKGNLL 331
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 33.1 bits (76), Expect = 0.083
Identities = 18/106 (16%), Positives = 28/106 (26%), Gaps = 24/106 (22%)
Query: 14 DCPFNCHDQGVC-NSRG--HCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSD------ 64
C C G C + G C C G+ +C + + + C D
Sbjct: 17 PCASLCCGHGTCIDGIGSFSCDCRSGWEGRFC----------QREVSFLNCSLDNGGCTH 66
Query: 65 RCIMAPSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCM 110
C+ R C G+ + + K C M
Sbjct: 67 YCLEEVGWR---RCSCAPGYK--LGDDLLQCHPAVKFPCGRPWKRM 107
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 34.0 bits (78), Expect = 0.10
Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 28/124 (22%)
Query: 18 NCHDQGVCNSRG---HCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSD------RCIM 68
C +QG C C C GF C E T + C D C
Sbjct: 49 PCQNQGKCKDGLGEYTCTCLEGFEGKNC----------ELFTRKL-CSLDNGDCDQFCHE 97
Query: 69 APSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNA---TCATGSCCNL 125
+S C G+ + + C T + T ++G +
Sbjct: 98 EQNSV---VCSCARGYT--LADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDS 152
Query: 126 ETCQ 129
T +
Sbjct: 153 ITWK 156
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 34.8 bits (80), Expect = 0.11
Identities = 16/134 (11%), Positives = 30/134 (22%), Gaps = 10/134 (7%)
Query: 92 DCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEFCT 151
++S +N C T+ + + + Q +F
Sbjct: 244 QEWPKESQRNLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFL- 302
Query: 152 GDSEFCPSDVFKM--------DGETCKGGEAFCYEGSCRTHSDQCLLLWGPSASSSDKRC 203
E + C+ + SC +C L + S +
Sbjct: 303 -GEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILH 361
Query: 204 FDLNTSGNRHGNCG 217
SG C
Sbjct: 362 GRGGISGYTLRLCK 375
Score = 31.4 bits (71), Expect = 1.4
Identities = 13/123 (10%), Positives = 23/123 (18%), Gaps = 15/123 (12%)
Query: 18 NCHDQGVCNSRGH---CHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRL 74
S H CH F + E + C
Sbjct: 273 KALSGFSLQSCRHSIPVFCHSSFY-------HDTDFLGEELDIVAAKSHEAC----QKLC 321
Query: 75 FDSPVC-GNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTA 133
++ C + C+ G N + + +G L
Sbjct: 322 TNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECT 381
Query: 134 GRQ 136
+
Sbjct: 382 TKI 384
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 33.6 bits (77), Expect = 0.11
Identities = 28/127 (22%), Positives = 31/127 (24%), Gaps = 42/127 (33%)
Query: 14 DCPF--NCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPS 71
CP +C HC G A CE C
Sbjct: 2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCE---------------------LC----D 36
Query: 72 SRLFDSPVCGNGFVEDGEECDC-GLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQP 130
F P+ NG V C C D CN TG C C
Sbjct: 37 DGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRL-----------TGECLK---CIY 82
Query: 131 HTAGRQC 137
+TAG C
Sbjct: 83 NTAGFYC 89
Score = 28.6 bits (64), Expect = 4.5
Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 15/89 (16%)
Query: 103 CCNATTCMLNVNATCATGSCCNLETCQPHTAGRQC-RAADRECDLPEFCTGDSEFC-PSD 160
C ++C + C + C TAG++C D P G C P
Sbjct: 3 CPGGSSCAIVPK--TKEVVCTH---CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQ 57
Query: 161 VFKMDGETCKGGEAFCYEGSCRTHSDQCL 189
C G+C + +CL
Sbjct: 58 --------CNDNIDPNAVGNCNRLTGECL 78
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 34.4 bits (78), Expect = 0.13
Identities = 19/112 (16%), Positives = 29/112 (25%), Gaps = 13/112 (11%)
Query: 26 NSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFDSPVCGNGFV 85
G C C+ + +H+T C ++C P
Sbjct: 250 AVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDC--EKC--LPFFNDRPWRRATAESA 305
Query: 86 EDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQC 137
+ CDC T G C N C+ +T G +C
Sbjct: 306 SECLPCDCNGRSQECYFDPELYRS------TGHGGHCTN---CRDNTDGAKC 348
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 34.3 bits (77), Expect = 0.14
Identities = 14/71 (19%), Positives = 17/71 (23%), Gaps = 2/71 (2%)
Query: 14 DCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGG-HNLGLEHDTTECTCPSDRCIMAPSS 72
CP C G C S G C C G+ N D E +
Sbjct: 193 PCPSYCSGHGDCIS-GVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQ 251
Query: 73 RLFDSPVCGNG 83
+G
Sbjct: 252 VGTGCGTLNDG 262
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 33.2 bits (76), Expect = 0.14
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 13 ADCPFNCHDQGVCNSRGH---CHCHPGFAPPYCEY 44
+ +C QG C C C+PGF P CEY
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEY 155
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 34.1 bits (77), Expect = 0.15
Identities = 21/192 (10%), Positives = 36/192 (18%), Gaps = 15/192 (7%)
Query: 15 CPFNCHDQGVCNSRGHCH--CHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSS 72
N C + HC C C G E +A +
Sbjct: 172 TVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHS-ECLGNCSQPDDPTKCVACRN 230
Query: 73 RLFDS---PVCGNGFVEDGEECDCGLEDSCKNAC--CNATTCMLNVNATCATGSCCNLET 127
D C + + C C++ C + C
Sbjct: 231 FYLDGRCVETCPPPYYHFQDWR-CVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCI--PE 287
Query: 128 CQP----HTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRT 183
C +++ C C + S + C
Sbjct: 288 CPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGG 347
Query: 184 HSDQCLLLWGPS 195
++ L
Sbjct: 348 NNLAAELEANLG 359
Score = 31.7 bits (71), Expect = 0.86
Identities = 26/227 (11%), Positives = 46/227 (20%), Gaps = 25/227 (11%)
Query: 47 GHNLGLEHDTTEC------TCPSDRCIMAPSSRLFDSPVCGNGFVEDGEECDCGLEDSCK 100
N L + T + + ++ +C +
Sbjct: 120 EKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFV 179
Query: 101 NACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEF---- 156
C + C C + C C C + D P C F
Sbjct: 180 ERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNC----SQPDDPTKCVACRNFYLDG 235
Query: 157 -----CPSDVFKMDGETCKGGEAFCYE--GSCRTHSDQCLLLWGPSASSSDKRCFDLNTS 209
CP + C FC + C+ Q + + C T
Sbjct: 236 RCVETCPPPYYHFQDWRCVNFS-FCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTM 294
Query: 210 GNRHGNCGYYKPNMTYAKCEEDKCNSNALTGHKVAKSTQNHSNSTSG 256
+ + C P + + +G
Sbjct: 295 NSSNLLC---TPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 34.1 bits (77), Expect = 0.17
Identities = 28/183 (15%), Positives = 46/183 (25%), Gaps = 36/183 (19%)
Query: 15 CPFNCHDQGVCNSRGHCHCHPGFA------PPYCEYPGGHNLGLEHDT---------TEC 59
C + +GHC + E H+ L C
Sbjct: 736 NSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYFTSPAC 795
Query: 60 TCPSDRCIMAPSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCAT 119
+++C+ C +G + + +T +C
Sbjct: 796 KFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTR--------LSSNSTK----KESCGY 843
Query: 120 GSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEG 179
+C + E C T +C C LP C KM T + C G
Sbjct: 844 DTCYDWEKCSAST--SKCV-----CLLPPQCFKGG--NQLYCVKMGSSTSEKTLNICEVG 894
Query: 180 SCR 182
+ R
Sbjct: 895 TIR 897
Score = 32.2 bits (72), Expect = 0.76
Identities = 23/177 (12%), Positives = 32/177 (18%), Gaps = 9/177 (5%)
Query: 22 QGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFDSPVCG 81
Q C C P G + + C ++
Sbjct: 491 QEYAAKFDPCQCAPCPNNGRPTLSGTE----CLCVCQSGTYGENCEKQSPDYKSNAVDGQ 546
Query: 82 NGFVEDGEECDCGLEDSCKNACCNATTC---MLNVNATCATGSCCNLETCQPHTAGRQCR 138
G CD + S C N C
Sbjct: 547 WGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCINDD 606
Query: 139 AADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLWGPS 195
+E DLPE CP V +G + + G
Sbjct: 607 EEMKEVDLPEIEA--DSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQ 661
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 34.0 bits (77), Expect = 0.19
Identities = 20/120 (16%), Positives = 29/120 (24%), Gaps = 5/120 (4%)
Query: 494 PNLPAFGSMRAKRPTSLAGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGYQ 553
P A ++ + PP P P T +G L
Sbjct: 16 PRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRIL 75
Query: 554 NHSAGQAKTPSGIESLPGYQNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKPKTYD 613
G T G Q A P G+ + G Y +P P + +
Sbjct: 76 RGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGL-----YHHPVPEPDPVRVEE 130
Score = 30.5 bits (68), Expect = 2.0
Identities = 12/102 (11%), Positives = 22/102 (21%), Gaps = 2/102 (1%)
Query: 508 TSLAGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGYQNHSAGQAKTPSGIE 567
+S S P +P + + + + + + P+
Sbjct: 3 SSHHHHHHSSGLVPRGSH--MVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60
Query: 568 SLPGYQNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKP 609
S Q G G G + Y P
Sbjct: 61 PPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPA 102
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 33.9 bits (77), Expect = 0.23
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
Query: 494 PNLPAFGSMRAKRPTSLAGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGYQ 553
P+ AF + G +P PGY +P A +P + P Y
Sbjct: 1500 PDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYS 1559
Query: 554 NHSAGQAKTPSGIESLPGYQNPSAGQAKTPGTPGQGLLGPG 594
S G + +P+ + S P Y S + +P +P P
Sbjct: 1560 PSSPGYSTSPAYMPSSPSYSPTS--PSYSPTSPSYSPTSPS 1598
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 32.9 bits (74), Expect = 0.28
Identities = 15/116 (12%), Positives = 23/116 (19%), Gaps = 5/116 (4%)
Query: 494 PNLPAFGSMRAKRPTSLAGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGYQ 553
+ + ++ P + P G G+ P G
Sbjct: 7 KPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPH 66
Query: 554 NHSAGQAKTPSGIESLPGYQNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKP 609
GQ G Q + GQ P P + G
Sbjct: 67 GGGWGQPHGGGG-----WGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGY 117
Score = 31.7 bits (71), Expect = 0.64
Identities = 19/110 (17%), Positives = 26/110 (23%), Gaps = 2/110 (1%)
Query: 500 GSMRAKRPTSLAGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGYQNHSAGQ 559
GS + +P + P +P G + P GQ Q G G
Sbjct: 1 GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG 60
Query: 560 AKTPSGIESLPGYQNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKP 609
Q G GT GQ ++ A
Sbjct: 61 GWGQPH--GGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAG 108
Score = 29.0 bits (64), Expect = 4.9
Identities = 18/97 (18%), Positives = 20/97 (20%), Gaps = 3/97 (3%)
Query: 516 PSQPPPPAPSGIQSLPGYQNPAGQ---AKTPSGIQSLPGYQNHSAGQAKTPSGIESLPGY 572
P G G+ P G G G G S P
Sbjct: 37 GWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKT 96
Query: 573 QNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKP 609
A G GL G G P + G
Sbjct: 97 NMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGSD 133
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 33.1 bits (76), Expect = 0.31
Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 13/83 (15%)
Query: 117 CATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFC 176
C + C + +CQ G C + + C + E G + FC
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPG---------YEGSNCELAKNECHPERTDGCQHFC 58
Query: 177 YEGS----CRTHSDQCLLLWGPS 195
G C L
Sbjct: 59 LPGQESYTCSCAQGYRLGEDHKQ 81
Score = 32.0 bits (73), Expect = 0.71
Identities = 18/101 (17%), Positives = 22/101 (21%), Gaps = 27/101 (26%)
Query: 15 CPFN-CHDQGVCNSRG---HCHCHPGFAPPYCEYPGGHNLGLEHDTTEC-TCPSDRCIMA 69
C C G C C C PG+ C E EC +D C
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNC----------ELAKNECHPERTDGC--- 54
Query: 70 PSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCM 110
C G ++ C C
Sbjct: 55 -------QHFCLPG--QESYTCSCAQGYRLGEDHKQCVPHD 86
Score = 29.7 bits (67), Expect = 3.2
Identities = 16/102 (15%), Positives = 21/102 (20%), Gaps = 11/102 (10%)
Query: 76 DSPVCGNGFVEDGE---ECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHT 132
P NG +D C C N C L N + C P
Sbjct: 10 SQPCLHNGSCQDSIWGYTCTCSPGYEGSN-------CELAKNECHPERTDGCQHFCLPGQ 62
Query: 133 AGRQCRAADR-ECDLPEFCTGDSEFCPSDVFKMDGETCKGGE 173
C A + C V + +
Sbjct: 63 ESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQD 104
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 33.0 bits (74), Expect = 0.33
Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 11 PVADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNL 50
P QG G C C PG CE G NL
Sbjct: 462 TQPQAPHCSDGQGHLQC-GVCSCAPGRLGRLCESRGLENL 500
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 33.3 bits (75), Expect = 0.36
Identities = 20/123 (16%), Positives = 35/123 (28%), Gaps = 2/123 (1%)
Query: 87 DGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDL 146
DG+ D ++ +C C + C N C+ C +
Sbjct: 592 DGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLG 651
Query: 147 P--EFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLWGPSASSSDKRCF 204
E + S K+ EA R+ +L+ S S+D
Sbjct: 652 RSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRL 711
Query: 205 DLN 207
+L+
Sbjct: 712 ELD 714
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 32.1 bits (73), Expect = 0.36
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 13 ADCPFNCHDQGVCNSRGH---CHCHPGFAPPYCEY 44
+ P++C G C + C+C G+ P C++
Sbjct: 121 SCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQF 155
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.50A {Methanopyrus kandleri}
Length = 195
Score = 32.4 bits (73), Expect = 0.38
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPSSRLFD 76
GH GL H CP C+M+ SS L +
Sbjct: 148 GHTFGLGH------CPDRNCVMSFSSSLLE 171
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 31.3 bits (71), Expect = 0.50
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 13 ADCPFNCHDQGVCNSRG---HCHCHPGFAPPYCEY 44
A +C G C C C PGF+ CE
Sbjct: 121 ACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, MUR16; 2.00A {Methanocorpusculum labreanum}
Length = 210
Score = 31.7 bits (71), Expect = 0.57
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPSSRLFD 76
GH GL H C + CIM L +
Sbjct: 152 GHLFGLGH------CDNPGCIMYCPRNLDE 175
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 30.8 bits (70), Expect = 0.58
Identities = 28/142 (19%), Positives = 39/142 (27%), Gaps = 27/142 (19%)
Query: 19 CHDQGVCNSRG-----HCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCI-----M 68
C + G+C C C GF P C E T+ C + C
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCE 67
Query: 69 APSSRLFDSP-----VCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNA-TCATGSC 122
+ D+ C GF +G C + + C N C V +C
Sbjct: 68 ISEAYRGDTFIGYVCKCPRGF--NGIHCQHNINECEVEPCKNGGICTDLVANYSC----- 120
Query: 123 CNLETCQPHTAGRQCRAADREC 144
C GR C+
Sbjct: 121 ----ECPGEFMGRNCQYKGGGH 138
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 32.1 bits (72), Expect = 0.63
Identities = 26/149 (17%), Positives = 35/149 (23%), Gaps = 18/149 (12%)
Query: 26 NSRGHCH--CHPGFAPPYCEYPGGHNLGLEH---DTTECTCP---SDRCIMAPSSRLFDS 77
++ G C C+ C P G L + D EC P S C+
Sbjct: 5 DNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG---YK 61
Query: 78 PVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQC 137
C GF D C S + + E R
Sbjct: 62 CQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR-------SEYTSLIPNLRNV 114
Query: 138 RAADRECDLPEFCTGDSEFCPSDVFKMDG 166
A D E D ++D
Sbjct: 115 VALDTEVASNRIYWSDLSQRMICSTQLDR 143
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 31.2 bits (70), Expect = 0.87
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 5/108 (4%)
Query: 507 PTSLAGSQRPSQPPPPAPSGIQSLPGYQNPAGQA--KTPSGIQSLPGYQNHSAGQAKTPS 564
P G R GI G PAG + P+G+ + Q TP
Sbjct: 86 PPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
Query: 565 G---IESLPGYQNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKP 609
G + + S A T PG+G P G G P + P
Sbjct: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPP 193
Score = 31.2 bits (70), Expect = 0.91
Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 516 PSQPPPPAPSGIQS-LPGYQNPAGQAKTPSGIQSLPGYQNHSAGQAKTPSGIESLPGYQN 574
P P AP+G+ + G P+ Q TP G ++ + PG
Sbjct: 116 AGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQ-YPPGRGG 174
Query: 575 PSAGQAKTPGTPGQGLLGPGQGLGYQNP-AVPPG 607
P + PG PG P +PPG
Sbjct: 175 PPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPG 208
Score = 29.6 bits (66), Expect = 2.9
Identities = 25/103 (24%), Positives = 28/103 (27%), Gaps = 1/103 (0%)
Query: 507 PTSLAGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGYQNHSAGQAKTPSGI 566
P LAG R P Q A A T S + Y G
Sbjct: 124 PAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAA-TASIAGAPTQYPPGRGGPPPPMGRG 182
Query: 567 ESLPGYQNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKP 609
PG P G G P G G +G P + P P
Sbjct: 183 APPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPP 225
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 31.3 bits (71), Expect = 0.97
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 3/97 (3%)
Query: 2 SVAALRASMPVADCPFNCHDQ-GVCNSRGHC--HCHPGFAPPYCEYPGGHNLGLEHDTTE 58
+ A L A + C VC C + G + + E
Sbjct: 24 TKAPLGALTALPRCGTGADQGKKVCIVYHRCDGVTNTVTPEEVINTTGEGIFDIRENANE 83
Query: 59 CTCPSDRCIMAPSSRLFDSPVCGNGFVEDGEECDCGL 95
C D C P + +P V + CG+
Sbjct: 84 CESYLDVCCGLPEGGVLPTPSPTPPVVPVLKPSFCGI 120
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 31.4 bits (70), Expect = 1.1
Identities = 29/171 (16%), Positives = 42/171 (24%), Gaps = 29/171 (16%)
Query: 72 SRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQ-- 129
SR+ DS + + + +CG D C T C V C CQ
Sbjct: 134 SRILDSVEDNHIVLNKDDNEECG--DICPGTAKGKTNCPATVINGQFVERCWTHSHCQKV 191
Query: 130 --PHTAGRQCRAADRECDLPEF--CTGDS------------------EFCPSDVFKMDGE 167
C A C C+ E CP +
Sbjct: 192 CPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDW 251
Query: 168 TCKGGEAFCYE--GSCRTHSDQCLLLWGPSASSSDKRCFDLNTSGNRHGNC 216
C FC + C+ Q + + C T + + C
Sbjct: 252 RCVNFS-FCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC 301
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 31.4 bits (71), Expect = 1.1
Identities = 20/177 (11%), Positives = 36/177 (20%), Gaps = 16/177 (9%)
Query: 76 DSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGR 135
D+ +C L C+ + C T +T
Sbjct: 146 DTQRRFKLSDLSINSTEC-LHVHCRGLETSLAECTFTKRRTMGYQDF---ADVVCYTQKA 201
Query: 136 QCRAADRECDLPEFCTGDSEFCPSDVFKMDGE-TCKGGEAFCYEGSCRTHSDQCLLLWGP 194
F + + S + DG C E C+ +
Sbjct: 202 DS------PMDDFFQCVNGK-YISQMKACDGINDCGDQSD---ELCCKACQGKGFHCKSG 251
Query: 195 SASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEEDKCNSNALTGHKVAKSTQNHS 251
S +C G + E + ++ + KS
Sbjct: 252 VCIPSQYQCNGEVDCITGEDEVGCAGFASVA-QEETEILTADMDAERRRIKSLLPKL 307
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 31.5 bits (71), Expect = 1.2
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 12 VADCPFNCHDQGVCNSRGHCHCHPGFAPPYCE 43
A C C GVC C C G+ P CE
Sbjct: 423 TAKCEPACRHGGVCVRPNKCLCKKGYLGPQCE 454
Score = 29.6 bits (66), Expect = 4.1
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 8 ASMPVADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEY----PGGHNLGLEHDTTECTC 61
A ++C C G C G C C PG+ +C P + G+ +C C
Sbjct: 388 AQTLTSECSRLC-RNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLC 444
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 29.0 bits (65), Expect = 1.2
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 9 SMPVADCPFN-CHDQGVCNSRGH-----CHCHPGFAPPYCE 43
S+PV C C + G C + C C GFA CE
Sbjct: 45 SVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 31.3 bits (70), Expect = 1.3
Identities = 18/144 (12%), Positives = 32/144 (22%), Gaps = 8/144 (5%)
Query: 117 CATGSCCNLETCQPHTAGRQCRAAD--------RECDLPEFCTGDSEFCPSDVFKMDGET 168
C + + CQ QC R C C +
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQ 65
Query: 169 CKGGEAFCYEGSCRTHSDQCLLLWGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKC 228
C + R+ A+ D R + S
Sbjct: 66 CWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHH 125
Query: 229 EEDKCNSNALTGHKVAKSTQNHSN 252
+ + +T ++ ++ N SN
Sbjct: 126 RRELVFWSDVTLDRILRANLNGSN 149
Score = 28.6 bits (63), Expect = 7.2
Identities = 22/155 (14%), Positives = 31/155 (20%), Gaps = 23/155 (14%)
Query: 18 NCHDQGVC-NSRG--HCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCP---SDRCIMAPS 71
N C RG C CH G+ + D EC S C +
Sbjct: 10 NGGCAQKCQMIRGAVQCTCHTGYRL-------TEDGRTCQDVNECAEEGYCSQGCTNSEG 62
Query: 72 SRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPH 131
+ C G+ + C + V E
Sbjct: 63 AFQC---WCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVL-------PHRSEYTLLL 112
Query: 132 TAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDG 166
A D D ++G
Sbjct: 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 147
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 31.1 bits (70), Expect = 1.3
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 5/90 (5%)
Query: 116 TCATGSCCNLETCQPHTAGRQCRAADR-----ECDLPEFCTGDSEFCPSDVFKMDGETCK 170
TC SC N C G C + C+ P S+ +K
Sbjct: 187 TCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRP 246
Query: 171 GGEAFCYEGSCRTHSDQCLLLWGPSASSSD 200
A T + +L+ S+S
Sbjct: 247 STRADRLAIGFSTVQKEAVLVRVDSSSGLG 276
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 31.0 bits (69), Expect = 1.3
Identities = 13/41 (31%), Positives = 14/41 (34%), Gaps = 11/41 (26%)
Query: 14 DCPFNCHDQGVCNSR-----------GHCHCHPGFAPPYCE 43
DC C Q NS G C C PG+ CE
Sbjct: 432 DCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A
Length = 163
Score = 29.9 bits (67), Expect = 1.6
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 15/42 (35%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPSSRLFDS--------PVC 80
GH LGL+H C + C+M S+ + D C
Sbjct: 123 GHVLGLKH------CS-NNCVMRFSNSVQDVDRKPVSFCREC 157
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 30.2 bits (67), Expect = 2.2
Identities = 16/115 (13%), Positives = 27/115 (23%), Gaps = 26/115 (22%)
Query: 9 SMPVADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIM 68
S+ + + NC C + C C + TC D+
Sbjct: 35 SLTMENPWANCSSPLPCWDYINNQCDELCNTVECLFDNFEC-----QGNSKTCKYDKYCA 89
Query: 69 APSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCN--ATTCMLNVNATCATGS 121
+ C+ G C + C C + A G+
Sbjct: 90 DH---------FKDNH------CNQG----CNSEECGWDGLDCAADQPENLAEGT 125
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 30.4 bits (67), Expect = 2.3
Identities = 36/263 (13%), Positives = 61/263 (23%), Gaps = 18/263 (6%)
Query: 14 DCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSR 73
D N + C P C G N S RC S
Sbjct: 147 DFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRC-RGKSPS 205
Query: 74 LFDSPVCGNGFVEDGEECDCGLEDSCKNACCNAT---TCMLNVNATCATGSCCNLETCQP 130
C G E DC C+ AT TC + T +
Sbjct: 206 DCCHNQCAAGCTGPRES-DC---LVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGK- 260
Query: 131 HTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGE---TCKGGEAFCYE------GSC 181
++ G C + C +D ++M+ + CK E C +
Sbjct: 261 YSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGE 320
Query: 182 RTHSDQCLLLWGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEEDKCNSNALTGH 241
S + DL+ + + + +TG
Sbjct: 321 FKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGF 380
Query: 242 KVAKSTQNHSNSTSGGRGQRLLS 264
+ ++ + ++
Sbjct: 381 LLIQAWPENRTDLHAFENLEIIR 403
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 30.5 bits (68), Expect = 2.4
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 15 CPFNCHDQGVCNSRG----HCHC-HPGFAPPYCEYPG 46
C C ++G C S G C C GF C P
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPE 41
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 30.4 bits (67), Expect = 2.4
Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 16/114 (14%)
Query: 72 SRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCAT-------GSC-- 122
+LF +P + E DCGLE N+ C C C C
Sbjct: 462 DQLFRNPHQALLHSGNRPEEDCGLEGLVCNSLCAHGHCWGPGPTQCVNCSHFLRGQECVE 521
Query: 123 -CNLETCQP--HTAGRQCRAADREC---DLPEFCTG-DSEFCPSDVFKMDGETC 169
C + P + + ++C EC + E C G +++ C + D +C
Sbjct: 522 ECRVWKGLPREYVSDKRCLPCHPECQPQNSSETCFGSEADQCAACAHYKDSSSC 575
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 30.5 bits (68), Expect = 2.5
Identities = 20/103 (19%), Positives = 27/103 (26%), Gaps = 1/103 (0%)
Query: 507 PTSLAGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGYQNHSAGQAKTPSGI 566
PT PS P P I S +P +P P S + S
Sbjct: 27 PTGRGSMAAPSLHPSLGPG-IGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVP 85
Query: 567 ESLPGYQNPSAGQAKTPGTPGQGLLGPGQGLGYQNPAVPPGKP 609
+ + + Q +P P LG P P
Sbjct: 86 TTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP 128
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 28.9 bits (65), Expect = 3.2
Identities = 17/114 (14%), Positives = 26/114 (22%), Gaps = 31/114 (27%)
Query: 15 CPFNCHDQGVC-NSRG--HCHCHPGFAPPYCEYPGGHNLGLEHDTTECTC-PSDRCIMAP 70
C + GVC NS G C C D T+ C + +
Sbjct: 7 CESSPCINGVCKNSPGSFICECSSES---------------TLDPTKTICIETIKG---- 47
Query: 71 SSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCN 124
C ++ E + C + + C C
Sbjct: 48 --------TCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICG 93
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 29.5 bits (65), Expect = 3.3
Identities = 16/135 (11%), Positives = 25/135 (18%), Gaps = 13/135 (9%)
Query: 59 CTCPSDRCIMAPSSRLFDS-PVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATC 117
C CI + D C N ED + CD + C
Sbjct: 60 CGGNEQECI--SDLLVCDGHKDCHNAHDEDPDVCD------TSVVKAGNVFSGTSTWHGC 111
Query: 118 ATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGD-SEFCPSDVFKMDGETCKGGEAF- 175
+ R+ A + + F G
Sbjct: 112 LAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRRLI 171
Query: 176 --CYEGSCRTHSDQC 188
+ + C
Sbjct: 172 LLPTDDHDDHLAVVC 186
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 29.5 bits (66), Expect = 3.9
Identities = 16/93 (17%), Positives = 21/93 (22%), Gaps = 3/93 (3%)
Query: 501 SMRAKRPTSLAGSQRPSQPPPPAPSGIQSLPGYQNPAGQAKTPSGIQSLPGYQNHSAGQA 560
+ P + PS + + Q GY
Sbjct: 349 DAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQ 408
Query: 561 KTPSGIESLPGYQNPSAG---QAKTPGTPGQGL 590
P GY P G Q P P QG+
Sbjct: 409 GYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGV 441
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 29.2 bits (64), Expect = 4.9
Identities = 21/232 (9%), Positives = 49/232 (21%), Gaps = 14/232 (6%)
Query: 14 DCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSR 73
P H Q + + C C P + C+ P D A +
Sbjct: 174 WGPTENHCQTLTRTVCAEQC-----DGRCYGPYVSDCCHRECAGGCSGPKDTDCFACMNF 228
Query: 74 LFDS---PVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQP 130
C FV + ++ T C + +C
Sbjct: 229 NDSGACVTQCPQTFVYNPTTF------QLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVR 282
Query: 131 HTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLL 190
+ + + + CT + + + ++ + L
Sbjct: 283 ACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNL 342
Query: 191 LWGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEEDKCNSNALTGHK 242
++ + D + + + + N +
Sbjct: 343 IFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFS 394
Score = 28.9 bits (63), Expect = 6.5
Identities = 24/253 (9%), Positives = 43/253 (16%), Gaps = 7/253 (2%)
Query: 12 VADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPS 71
V CP H +C HN ++ + CPS + + +
Sbjct: 235 VTQCPQTFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEEN 294
Query: 72 SRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATC-------ATGSCCN 124
P L + N +
Sbjct: 295 GIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPY 354
Query: 125 LETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTH 184
RE + T G +
Sbjct: 355 NAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILK 414
Query: 185 SDQCLLLWGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEEDKCNSNALTGHKVA 244
L S + + N + + N + A
Sbjct: 415 QQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTA 474
Query: 245 KSTQNHSNSTSGG 257
+ + +S G
Sbjct: 475 EGMVCNHLCSSDG 487
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 29.2 bits (65), Expect = 5.3
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 15 CPFNCHDQGVCNSRG----HCHC-HPGFAPPYCEYPG 46
C + C QG+C G C C G++ P C P
Sbjct: 6 CYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 42
>2zw5_A Bleomycin acetyltransferase; dimer, two domains; HET: COA; 2.40A
{Streptomyces verticillus} PDB: 2zw4_A* 2zw6_A 2zw7_A*
Length = 301
Score = 28.6 bits (64), Expect = 6.3
Identities = 10/69 (14%), Positives = 16/69 (23%), Gaps = 8/69 (11%)
Query: 291 RAAPVKPTPPKVPSDAQITPIRAAPKIPATSVRLSADFANFSATLPPELPPANKGPNTSP 350
+ P+R F+ PPE A P ++
Sbjct: 179 PLTTLAVITE--------LPVRDVAATLRLVEAALGARTAFAIGDPPEFAEAALTPWSAG 230
Query: 351 YARPLISSP 359
L + P
Sbjct: 231 PRFRLAAVP 239
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 28.1 bits (63), Expect = 6.4
Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 23/100 (23%)
Query: 19 CHDQGVCNSRG---HCHCHPGFAPPYCEYPGGHNLGLEHDTTECT----CPSDRCIMAPS 71
C + G+C C C GF C E D T C A S
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGKNC----------ELDATCNIKNGRCKQFCKTGADS 105
Query: 72 SRLFDSPVCGNGF--VEDGEECDCGLEDSCKN-ACCNATT 108
C G+ D + C + C + ++ T
Sbjct: 106 KV---LCSCTTGYRLAPDQKSCKPAVPFPCGRVSVSHSPT 142
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 28.8 bits (63), Expect = 6.5
Identities = 20/111 (18%), Positives = 31/111 (27%), Gaps = 8/111 (7%)
Query: 49 NLGLEHDTTECTCPSDRCIMAPSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATT 108
++ ++H+ C + R V N + E+ D C C
Sbjct: 434 SVVIQHNRDLCYVSNIRWPAIQKEPEQKVWVNENLRADLCEKNGTICSDQCNEDGCWGAG 493
Query: 109 C--MLNVNATCATGSC---CNLETCQPHTAGRQCRAADRECDLPEFCTGDS 154
LN G+C C + R C+ EC C G
Sbjct: 494 TDQCLNCKNFNFNGTCIADCGYISNAYKFDNRTCKICHPEC---RTCNGAG 541
Score = 28.4 bits (62), Expect = 8.8
Identities = 32/230 (13%), Positives = 45/230 (19%), Gaps = 24/230 (10%)
Query: 14 DCPFNCHDQGVCNSRGHCHC-HPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSS 72
+ + + C G N T + P
Sbjct: 147 SNGTDAYYNYDFTAPERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPKP 206
Query: 73 RLFDSPVCGNGFVEDGEECDC------GLEDSCKNAC-----CNATTCMLNVNATCATGS 121
R C G + DC E CK C N TT +L N
Sbjct: 207 RECCHLFCAGG-CTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTYVLETNPEGKYAY 265
Query: 122 CCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEF--CPSDVFKMDGETCKGGEAFCYEG 179
P R A R C + G G T
Sbjct: 266 GATCVKECPGHLLRDNGACVRSCPQDKMDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFR 325
Query: 180 SCRTHSDQCLLLWGPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCE 229
+C +L + F + G + + E
Sbjct: 326 NCTVIDGNIRIL---------DQTFSGFQDVYANYTMGPRYIPLDPERLE 366
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 27.5 bits (61), Expect = 8.0
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 8/46 (17%)
Query: 15 CPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECT 60
C C C + C C+PGF+ + + C
Sbjct: 5 CARWCPQDSSCVNATACRCNPGFS--------SFSEIITTPMETCD 42
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 28.3 bits (63), Expect = 8.4
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 86 EDGEEC-DCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRA 139
+ G C DC +C N C + N C S +CQ C A
Sbjct: 162 KLGPPCGDCP--SACDNGLCTNPCTIYNKLTNC--DSLLKQSSCQDDWIKSNCPA 212
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 28.4 bits (63), Expect = 9.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 30 HCHCHPGFAPPYCEYPG 46
C C+PG+ P+CE
Sbjct: 398 KCRCYPGWQAPWCERKS 414
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 26.9 bits (60), Expect = 9.6
Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 17/96 (17%)
Query: 18 NCHDQGVCNSRG--HCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLF 75
NC Q + C C GFA P H T C +
Sbjct: 11 NCEYQCQPLDQTSYLCVCAEGFA------PIPHEPHRCQMFCNQTACPADCDPNTQASC- 63
Query: 76 DSPVCGNGFV-EDGEEC-DCGLEDSCKNACCNATTC 109
C G++ +DG C D D C+N + C
Sbjct: 64 ---ECPEGYILDDGFICTDI---DECENGGFCSGVC 93
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 28.3 bits (63), Expect = 9.7
Identities = 14/120 (11%), Positives = 25/120 (20%), Gaps = 15/120 (12%)
Query: 28 RGHCHCHPGF--APPYCEYPGGHNLGLEHDTTECTCPSDRCIM------APSSRLFDSPV 79
H + +C P G D C
Sbjct: 48 SKHQDFNSAVQLVENFCRNPDG-------DEEGVWCYVAGKPGDFGYCDLNYCEEAVEEE 100
Query: 80 CGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRA 139
G+G ED + G + + + A C ++ + T +
Sbjct: 101 TGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLES 160
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.390
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,243,822
Number of extensions: 607276
Number of successful extensions: 1945
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1424
Number of HSP's successfully gapped: 362
Length of query: 718
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 618
Effective length of database: 3,909,693
Effective search space: 2416190274
Effective search space used: 2416190274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (27.6 bits)