RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1605
(718 letters)
>d1j2la_ g.20.1.1 (A:) Flavoridin (triflavin) {Habu snake
(Trimeresurus flavoviridis) [TaxId: 88087]}
Length = 68
Score = 81.4 bits (201), Expect = 9e-20
Identities = 32/71 (45%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 88 GEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLP 147
GEECDCG S N CC+A TC L A CA G CC + C+ CR A R
Sbjct: 1 GEECDCG---SPSNPCCDAATCKLRPGAQCADGLCC--DQCRFKKKRTICRIA-RGDFPD 54
Query: 148 EFCTGDSEFCP 158
+ CTG S CP
Sbjct: 55 DRCTGQSADCP 65
>d1teja_ g.20.1.1 (A:) Schistatin {Saw-scaled viper (Echis
carinatus), different isoforms [TaxId: 40353]}
Length = 62
Score = 70.2 bits (172), Expect = 8e-16
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 100 KNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPS 159
N CC+ C C +G CCN C+ +G C+ A R ++CTG + CP
Sbjct: 2 VNPCCDPVICKPRDGEHCISGPCCN--NCKFLNSGTICQRA-RGDGNHDYCTGITTDCPR 58
Query: 160 DVF 162
+ +
Sbjct: 59 NRY 61
>d2echa_ g.20.1.1 (A:) Echistatin {Saw-scaled viper (Echis
carinatus) [TaxId: 40353]}
Length = 49
Score = 63.6 bits (155), Expect = 1e-13
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 117 CATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDG 166
C +G CC C+ G C+ A R D+ ++C G + CP + K
Sbjct: 2 CESGPCC--RNCKFLKEGTICKRA-RGDDMDDYCNGKTCDCPRNPHKGPA 48
>d1mpza_ g.20.1.1 (A:) Obtustatin {Blunt-nosed viper (Vipera
lebetina obtusa) [TaxId: 209528]}
Length = 41
Score = 50.4 bits (121), Expect = 4e-09
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 117 CATGSCCNLETCQPHTAGRQCRAADRECDLPEFCTGDSEFCPS 159
C TG CC C+ AG C + +CTG S CP
Sbjct: 1 CTTGPCC--RQCKLKPAGTTCW---KTSLTSHYCTGKSCDCPL 38
>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake
(Agkistrodon acutus), acutolysin A [TaxId: 36307]}
Length = 197
Score = 46.3 bits (109), Expect = 3e-06
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS 71
HNLG+ HD C+C CIM+PS
Sbjct: 142 AHNLGVSHDEGSCSCGGKSCIMSPS 166
>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo
(Bothrops asper), bap1 [TaxId: 8722]}
Length = 202
Score = 43.2 bits (101), Expect = 3e-05
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS 71
GHNLG++HDT C+C + CIMA
Sbjct: 145 GHNLGIDHDTGSCSCGAKSCIMASV 169
>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese
five-pace snake (Agkistrodon acutus), acutolysin C
[TaxId: 36307]}
Length = 197
Score = 42.9 bits (100), Expect = 4e-05
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 16/53 (30%)
Query: 33 CHPGFAPPYCEYPG--------------GHNLGLEHDTTECTCPSDRCIMAPS 71
C+ ++ + GHNLG+ HD C+C + CIMAP
Sbjct: 116 CNSKYSVGLIQDHSAIPLLMAVTMAHELGHNLGMNHDGAGCSCAT--CIMAPV 166
>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western
diamonback rattlesnake (Crotalus atrox), atrolysin C
[TaxId: 8730]}
Length = 200
Score = 42.5 bits (99), Expect = 5e-05
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPSS 72
GHNLG+EHD +C + CIM P
Sbjct: 143 GHNLGMEHDGKDCLRGASLCIMRPGL 168
>d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu
(Trimeresurus mucrosquamatus), atrolysin E [TaxId:
103944]}
Length = 201
Score = 35.9 bits (82), Expect = 0.008
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 47 GHNLGLEHDTTECTCPSDRCIMAPS 71
GHNLG+EHD C D CIM+
Sbjct: 145 GHNLGMEHDDK-DKCKCDTCIMSAV 168
>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 35.1 bits (80), Expect = 0.016
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 47 GHNLGLEHDTTECTC----PSDRCIMAPS 71
GH+LGL HD C S C+MA +
Sbjct: 141 GHSLGLSHDPDGCCVEAAAESGGCVMAAA 169
>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 41
Score = 29.4 bits (66), Expect = 0.10
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 19 CHDQGVCNSRGHCHCHPGFAPPYCE 43
+G+C G C CHPGF C+
Sbjct: 17 GPGRGLCFC-GKCRCHPGFEGSACQ 40
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 254
Score = 31.4 bits (70), Expect = 0.35
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 6/38 (15%)
Query: 47 GHNLGLEHDTTECT------CPSDRCIMAPSSRLFDSP 78
GHN G EHD + +M P + D
Sbjct: 189 GHNFGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHE 226
>g1rtf.1 b.47.1.2 (A:,B:) Two-chain tissue plasminogen activator
(TC)-T-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 260
Score = 30.5 bits (67), Expect = 0.61
Identities = 18/137 (13%), Positives = 29/137 (21%), Gaps = 4/137 (2%)
Query: 18 NCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFDS 77
+Q + H L L+ D++ C S
Sbjct: 79 GEEEQKFEVEKYIVHKEF---DDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQ 135
Query: 78 PVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTAGRQC 137
G L A + + + T AG
Sbjct: 136 LPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTR 195
Query: 138 RAADRECDLPEFCTGDS 154
+ +L + C GDS
Sbjct: 196 SGGP-QANLHDACQGDS 211
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 27.3 bits (61), Expect = 0.63
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 19 CHDQGVCNSRG---HCHCHPGFAPPYCE 43
C + G C C C GF CE
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCE 38
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 27.0 bits (60), Expect = 0.81
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 13 ADCPFNCHDQGVCNSRG---HCHCHPGFAPPYCE 43
+ C G C + C C G+ P CE
Sbjct: 7 SLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE 40
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 43
Score = 27.0 bits (60), Expect = 0.82
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 21 DQGVCNSRGHCHC------HPGFAPPYCEY 44
+ +C+ RG C C PG CE
Sbjct: 9 NGLLCSGRGKCECGSCVCIQPGSYGDTCEK 38
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 26.6 bits (59), Expect = 1.1
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 19 CHDQGVCNSRG---HCHCHPGFAPPYCE 43
C + G C + C C P F CE
Sbjct: 10 CQNGGSCKDQLQSYICFCLPAFEGRNCE 37
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 26.6 bits (59), Expect = 1.2
Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 19 CHDQGVCNSRG---HCHCHPGFAPPYCE 43
C +QG C C C GF CE
Sbjct: 8 CQNQGKCKDGLGEYTCTCLEGFEGKNCE 35
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 29.3 bits (64), Expect = 1.2
Identities = 11/139 (7%), Positives = 23/139 (16%), Gaps = 5/139 (3%)
Query: 8 ASMPVADCPFNCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCI 67
A + + A + + D ++ C
Sbjct: 47 AGQIDDFHAPDHIPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVTANACG 106
Query: 68 MAPSSRLFDSPVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLET 127
+ + G + + M ++ L
Sbjct: 107 GFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGL-- 164
Query: 128 CQPHTAGRQCRAADRECDL 146
A R R L
Sbjct: 165 DALGHA---RRTIRRGTPL 180
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 26.8 bits (59), Expect = 1.3
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 19 CHDQGVCN-----SRGHCHCHPGFAPPYCEY 44
C + GVC C+C G++ C+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 26.2 bits (58), Expect = 1.5
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 19 CHDQGVCNSRG---HCHCHPGFAPPYCE 43
C + C + C C PG+ +CE
Sbjct: 9 CQNDATCLDQIGEFQCICMPGYEGVHCE 36
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 25.9 bits (57), Expect = 1.8
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 19 CHDQGVCNSRG---HCHCHPGFAPPYCEY 44
C QG C C C+PGF P CEY
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYGPECEY 37
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus
influenzae [TaxId: 727]}
Length = 120
Score = 27.8 bits (62), Expect = 2.3
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 618 LLSESMAALANVDHNPNDNIYAVIEESPATSDLGLLGEIVSEIQ 661
L+ + L ++ I+E PA G G E +
Sbjct: 78 LIKMLFSELEYKLGIRAHDVEITIKEQPA-HCWGFRGMTGDEAR 120
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 25.5 bits (56), Expect = 2.5
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 19 CHDQGVCNSRG----HCHC-HPGFAPPYCEYP 45
C ++G C S G C C GF C P
Sbjct: 9 CQNRGECMSTGFDQYKCDCTRTGFYGENCTTP 40
>d1jltb_ a.133.1.2 (B:) Snake phospholipase A2 {Sand viper (Vipera
ammodytes meridionalis), vipoxin catalytic subunit
[TaxId: 8704]}
Length = 122
Score = 27.6 bits (61), Expect = 2.6
Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 14/91 (15%)
Query: 81 GNGFVEDGEECDCGLEDSCKNA---CCNATTC----MLNVNATCATGSCCNLETCQPHTA 133
G G +D + C + D C C N C + C + C+
Sbjct: 32 GQGTPKDATDRCCFVHDCCYGRVRGCNPKLAIYSYSFKKGNIVCGKNNGCLRDICECDRV 91
Query: 134 GRQCRAADREC-------DLPEFCTGDSEFC 157
C ++ C SE C
Sbjct: 92 AANCFHQNKNTYNKNYKFLSSSRCRQTSEQC 122
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 25.5 bits (56), Expect = 2.7
Identities = 10/29 (34%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 19 CHDQGVCNSRG---HCHCHPGFAPPYCEY 44
C G C C C PGF+ CE
Sbjct: 9 CSGHGECVETINNYTCKCDPGFSGLKCEQ 37
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 374
Score = 28.3 bits (63), Expect = 3.0
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 12/89 (13%)
Query: 14 DCPFNCHDQGVCNSRGHCH---CHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAP 70
C F + G+C +R C P P +DT + SD
Sbjct: 36 QCSFWDANDGLCLNRA-CSVDVVEDWDTLPEYWQPEILG-SFNNDTMKEADDSD-----D 88
Query: 71 SSRLFD--SPVCGNGFVEDGEECDCGLED 97
+ D + C + D
Sbjct: 89 ECKFLDQLCQTSKKPVDIEDTINYCDVND 117
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 25.0 bits (55), Expect = 3.1
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 19 CHDQGVCNSRG---HCHCHPGFAPPYCE 43
C G C + C C GF C+
Sbjct: 8 CLHNGRCLDKINEFQCECPTGFTGHLCQ 35
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 56
Score = 25.6 bits (56), Expect = 3.9
Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 109 CMLNVNATCATGSCCNLET-----CQPHTAGRQC 137
C N N CN T C +TAG C
Sbjct: 1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYC 34
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 25.2 bits (55), Expect = 4.9
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 19 CHDQGVCN-----SRGHCHCHPGFAPPYCEY 44
C GVC + C+C G+ C+Y
Sbjct: 12 CLHDGVCMYIEALDKYACNCVVGYIGERCQY 42
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia
coronaria) [TaxId: 52861]}
Length = 208
Score = 27.2 bits (59), Expect = 5.0
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 6/116 (5%)
Query: 21 DQGVCNSRGHCHCHPG---FAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFDS 77
+QG C S C G E + +C + C+ +
Sbjct: 18 NQGSCGS---CWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQY 74
Query: 78 PVCGNGFVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHTA 133
+ G ++ C+ A + N C + QP T
Sbjct: 75 IINNGGIDTQANYPYKAVQGPCQAASKVVSIDGYNGVPFCNEXALKQAVAVQPSTV 130
>d2cvca1 a.138.1.1 (A:40-544) 16-heme cytochrome c HmcA
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 505
Score = 27.8 bits (59), Expect = 6.1
Identities = 21/223 (9%), Positives = 30/223 (13%), Gaps = 10/223 (4%)
Query: 18 NCHDQGVCNSRGHCHCHPGFAPPYCEYPGGHNLGLEHDTTECTCPSDRCIMAPSSRLFDS 77
CH P C S
Sbjct: 282 ACHTVNGTADSKFVQLEKAMHQPDSMRSCVGCHNTRVQQPTCAGCHGFIKPTKSDAQCGV 341
Query: 78 PVCGNG-----FVEDGEECDCGLEDSCKNACCNATTCMLNVNATCATGSCCNLETCQPHT 132
VE G + E + A + +
Sbjct: 342 CHVAAPGFDAKQVEAGALLNLKAEQRSQVAASMLSARPQPKGTFDLNDIPEKVVIGSIAK 401
Query: 133 AGRQCRAADRECDLPEFCTGDSEFCPSDVFKMDGETCKGGEAFCYEGSCRTHSDQCLLLW 192
+ R+ + + G C+G C
Sbjct: 402 EYQPSEFPHRKIVKTLIAGIGEDKLAATFHIEKGTLCQGCHHNSPASLTPPKCASC---- 457
Query: 193 GPSASSSDKRCFDLNTSGNRHGNCGYYKPNMTYAKCEEDKCNS 235
R H C M K C
Sbjct: 458 -HGKPFDADRGDRPGLKAAYHQQCMGCHDRMKIEKPANTACVD 499
>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 23.6 bits (51), Expect = 9.6
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 19 CHDQGVCNSRGHCHCHPGFAPPYC 42
C G C+ G C C + YC
Sbjct: 5 CSGHGQCSC-GDCLCDSDWTGYYC 27
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 24.4 bits (53), Expect = 9.8
Identities = 6/30 (20%), Positives = 7/30 (23%), Gaps = 4/30 (13%)
Query: 19 CHDQGVC----NSRGHCHCHPGFAPPYCEY 44
C C C G+ CE
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGARCER 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.128 0.390
Gapped
Lambda K H
0.267 0.0376 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,513,111
Number of extensions: 119717
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 103
Length of query: 718
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 626
Effective length of database: 1,144,436
Effective search space: 716416936
Effective search space used: 716416936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.3 bits)