BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16052
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 105 DGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
+GF+ G C+ R L CNG+ DC D SDE C
Sbjct: 69 EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANC 101
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 95 LLYTDEPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
L +E C++ F C G CI R L CNGE DC D SDE C
Sbjct: 111 LCKIEEADCKNKF-RCDSGRCIARKLECNGENDCGDNSDERDC 152
>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
Length = 554
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 113 GACIERGLFCNGEKDCNDGSDENTCD 138
G C++R L CNG++DC DGSDE+ C+
Sbjct: 76 GRCLKRHLVCNGDQDCLDGSDEDDCE 101
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 104 QDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVL------- 156
QD F C DG CI R C+ ++DC DGSDE +C + C+ + C+
Sbjct: 108 QDEF-RCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDN 166
Query: 157 -PDCFCSEDGT 166
PDC EDG+
Sbjct: 167 DPDC---EDGS 174
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDEN 135
C+ C DG CI C+G +C DGSDE+
Sbjct: 24 CERNEFQCQDGKCISYKWVCDGSAECQDGSDES 56
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 103 CQDGFLACGDGA--CIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCF 160
C+ G +CG CI + C+G+ DC++GSDE C + C C+
Sbjct: 65 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFV 124
Query: 161 CSEDGTYIPG 170
C D + G
Sbjct: 125 CDSDRDCLDG 134
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
C+ C DG CI C+ E DC D SDE C
Sbjct: 233 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 267
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 104 QDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVL------- 156
QD F C DG CI R C+ ++DC DGSDE +C + C+ + C+
Sbjct: 90 QDEF-RCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDN 148
Query: 157 -PDCFCSEDGT 166
PDC EDG+
Sbjct: 149 DPDC---EDGS 156
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDEN 135
C+ C DG CI C+G +C DGSDE+
Sbjct: 6 CERNEFQCQDGKCISYKWVCDGSAECQDGSDES 38
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 103 CQDGFLACGDGA--CIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCF 160
C+ G +CG CI + C+G+ DC++GSDE C + C C+
Sbjct: 47 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFV 106
Query: 161 CSEDGTYIPG 170
C D + G
Sbjct: 107 CDSDRDCLDG 116
>pdb|2GTL|M Chain M, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 217
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 115 CIERGLFCNGEKDCNDGSDEN 135
CI LFC+GEKDC DGSDE+
Sbjct: 68 CIHDLLFCDGEKDCRDGSDED 88
>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl
Receptor Ligand-Binding Modules 3-4 And The Receptor
Associated Protein (Rap)
Length = 80
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
C C DG CI R C+ ++DC DGSDE +C
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37
>pdb|1LDL|A Chain A, Three-Dimensional Structure Of A Cysteine-Rich Repeat From
The Low-Density Lipoprotein Receptor
Length = 48
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDEN--TCDS 139
C+ C DG CI C+G +C DGSDE+ TC S
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLS 46
>pdb|2IW0|A Chain A, Structure Of The Chitin Deacetylase From The Fungal
Pathogen Colletotrichum Lindemuthianum
Length = 254
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 22/121 (18%)
Query: 178 PQMITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVS-------HKYTNYSAVQ 230
P ++ +T+DD ++ + ++N D++ATFFV+ +N ++
Sbjct: 41 PGLVALTYDDG----PFTFTPQLLDILKQN----DVRATFFVNGNNWANIEAGSNPDTIR 92
Query: 231 ELHRKGHEVAVHSITHNDDENFWSNATVDDWAKEMAGMRIIAEKYANLSDNSVVGVRAPY 290
+ GH V H+ H D S A ++ MR + E + + +RAPY
Sbjct: 93 RMRADGHLVGSHTYAHPDLNTLSS-------ADRISQMRQLEEATRRIDGFAPKYMRAPY 145
Query: 291 L 291
L
Sbjct: 146 L 146
>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3 From
The Low Density Lipoprotein Receptor-Related Protein
(Lrp) . Evidence For Specific Binding To The Receptor
Binding Domain Of Human Alpha-2 Macroglobulin
Length = 45
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 101 PLCQDGFLACGDGACIERGLFCNGEKDCNDGSDE 134
P CQ G AC + CI+ C+G+ DC D SDE
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
>pdb|1LDR|A Chain A, Second Repeat Of The Ldl Receptor Ligand-Binding Domain
Length = 43
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 103 CQDGFLACGD--GACIERGLFCNGEKDCNDGSDENTC 137
C+ G +CG CI + C+G+ DC++GSDE C
Sbjct: 7 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
>pdb|2C1G|A Chain A, Structure Of Streptococcus Pneumoniae Peptidoglycan
Deacetylase (Sppgda)
Length = 431
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 16/153 (10%)
Query: 140 ENDPNRAPPCDPAVCVLPDCFCSEDGTYIPGDLPSKEVPQMITITFDDAINNNNIALYKE 199
EN A P V+ + E + K+ +++ +TFDD N E
Sbjct: 197 ENLEEIALPVSAFFDVIQSSYLLEKDAALYQSYFDKKHQKVVALTFDDGPNPATTPQVLE 256
Query: 200 MFNGKRKNPNGCDIKATFFVSHKYT--NYSAVQELHRKGHEVAVHSITHNDDENFWSNAT 257
DIKATFFV K N V+ + +GH V HS +H S +
Sbjct: 257 TLAK-------YDIKATFFVLGKNVSGNEDLVKRIKSEGHVVGNHSWSH----PILSQLS 305
Query: 258 VDDWAKEMAGMRIIAEKYANLSDNSVVGVRAPY 290
+D+ K++ + K S +R PY
Sbjct: 306 LDEAKKQITDTEDVLTKVLGSSSKL---MRPPY 335
>pdb|3RXZ|A Chain A, Crystal Structure Of Putative Polysaccharide Deacetylase
From Mycobacterium Smegmatis
pdb|3RXZ|B Chain B, Crystal Structure Of Putative Polysaccharide Deacetylase
From Mycobacterium Smegmatis
pdb|3RXZ|C Chain C, Crystal Structure Of Putative Polysaccharide Deacetylase
From Mycobacterium Smegmatis
pdb|3RXZ|D Chain D, Crystal Structure Of Putative Polysaccharide Deacetylase
From Mycobacterium Smegmatis
Length = 300
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 212 DIKATFFVSHKYTNY---SAVQELHRKGHEVAVHSITHNDDENFWSNATVDDWAKEMAGM 268
++ TFFV YT + ++ + R GHE+A H H S D+ +
Sbjct: 75 NVPGTFFVP-GYTAHRHPEPIRSIARAGHEIAHHGYLHE------SLVGADEDTERKILT 127
Query: 269 RIIAEKYANLSDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTI 313
R I E ++ VG RAP + ++ E FLYDST+
Sbjct: 128 RGI-EALEEVAGVHPVGYRAPXWEXNWHTP-KLLAEFGFLYDSTL 170
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 16/35 (45%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
CQ C G CI CNGE DC G DE C
Sbjct: 241 CQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGC 275
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 98 TDEPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLP 157
D P+ D F C +G I + C+G DC D SDE C + + C VC+
Sbjct: 201 ADSPM--DDFFQCVNGKYISQMKACDGINDCGDQSDELCCKACQ--GKGFHCKSGVCIPS 256
Query: 158 DCFCSEDGTYIPGD 171
C+ + I G+
Sbjct: 257 QYQCNGEVDCITGE 270
>pdb|2M0P|A Chain A, Solution Structure Of The Tenth Complement Type Repeat Of
Human Megalin
Length = 52
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDS 139
C D C + CI + C+ + DC DGSDE C+S
Sbjct: 7 CLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNS 43
>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 215
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 99 DEPLCQDGFLACG--DGACIERGLFCNGEKDCNDGSDENTC 137
++P C + CG D CI + C+G DC +G DE C
Sbjct: 51 EDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 91
>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues
130-14
Length = 80
Score = 31.6 bits (70), Expect = 0.94, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 103 CQDGFLAC-GDGACIERGLFCNGEKDCNDGSDEN 135
C +C G C+ C+G+KDC DG+DE+
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADES 42
>pdb|1CR8|A Chain A, Low Density Lipoprotein Receptor-Related Protein
Complement Repeat 8
Length = 42
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 105 DGFLACGDGACIERGLFCNGEKDCNDGSDENTCD 138
D F DG CI C+G+ DC D SDE +C+
Sbjct: 7 DEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
>pdb|2C1I|A Chain A, Structure Of Streptococcus Pnemoniae Peptidoglycan
Deacetylase (Sppgda) D 275 N Mutant
Length = 431
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 16/153 (10%)
Query: 140 ENDPNRAPPCDPAVCVLPDCFCSEDGTYIPGDLPSKEVPQMITITFDDAINNNNIALYKE 199
EN A P V+ + E + K+ +++ +TF+D N E
Sbjct: 197 ENLEEIALPVSAFFDVIQSSYLLEKDAALYQSYFDKKHQKVVALTFNDGPNPATTPQVLE 256
Query: 200 MFNGKRKNPNGCDIKATFFVSHKYT--NYSAVQELHRKGHEVAVHSITHNDDENFWSNAT 257
DIKATFFV K N V+ + +GH V HS +H S +
Sbjct: 257 TLAK-------YDIKATFFVLGKNVSGNEDLVKRIKSEGHVVGNHSWSH----PILSQLS 305
Query: 258 VDDWAKEMAGMRIIAEKYANLSDNSVVGVRAPY 290
+D+ K++ + K S +R PY
Sbjct: 306 LDEAKKQITDTEDVLTKVLGSSSKL---MRPPY 335
>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1
Length = 50
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 103 CQDGFLAC-GDGACIERGLFCNGEKDCNDGSDEN 135
C +C G C+ C+G+KDC DG+DE+
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADES 40
>pdb|2GTL|N Chain N, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 220
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 103 CQDGFLACG--DGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCF 160
C+ CG + CI L C+G KDC++ DE DP+ CD +V + F
Sbjct: 53 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE-------DPD---VCDTSVVKAGNVF 102
Query: 161 CSEDGTYI-PGDLPSKEVPQMITIT 184
GT G L ++ ITIT
Sbjct: 103 ---SGTSTWHGCLAREDHVTRITIT 124
>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2
pdb|1H0K|B Chain B, Enoyl Thioester Reductase 2
Length = 364
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 427 YWVDEIIERHKDVYFVTMTQVIQWIQNPRTITEVKNFD 464
+WV E+++ +K++ T+ Q+I W + + +T+ K+ +
Sbjct: 299 FWVTELLKNNKELKTSTLNQIIAWYEEGK-LTDAKSIE 335
>pdb|1GYR|A Chain A, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|B Chain B, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|C Chain C, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
Length = 364
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 427 YWVDEIIERHKDVYFVTMTQVIQWIQNPRTITEVKNFD 464
+WV E+++ +K++ T+ Q+I W + + +T+ K+ +
Sbjct: 299 FWVTELLKNNKELKTSTLNQIIAWYEEGK-LTDAKSIE 335
>pdb|1GU7|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GU7|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
Length = 364
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 427 YWVDEIIERHKDVYFVTMTQVIQWIQNPRTITEVKNFD 464
+WV E+++ +K++ T+ Q+I W + + +T+ K+ +
Sbjct: 299 FWVTELLKNNKELKTSTLNQIIAWYEEGK-LTDAKSIE 335
>pdb|1N9G|A Chain A, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|C Chain C, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|F Chain F, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 427 YWVDEIIERHKDVYFVTMTQVIQWIQNPRTITEVKNFD 464
+WV E+++ +K++ T+ Q+I W + + +T+ K+ +
Sbjct: 321 FWVTELLKNNKELKTSTLNQIIAWYEEGK-LTDAKSIE 357
>pdb|1N9G|B Chain B, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|D Chain D, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|E Chain E, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 427 YWVDEIIERHKDVYFVTMTQVIQWIQNPRTITEVKNFD 464
+WV E+++ +K++ T+ Q+I W + + +T+ K+ +
Sbjct: 321 FWVTELLKNNKELKTSTLNQIIAWYEEGK-LTDAKSIE 357
>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second
Ligand-Binding Modules Of The Human Ldl Receptor
Length = 85
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDEN 135
C+ C DG CI C+G +C DGSDE+
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDES 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,789,990
Number of Sequences: 62578
Number of extensions: 729411
Number of successful extensions: 1383
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1329
Number of HSP's gapped (non-prelim): 66
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)