RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16052
(476 letters)
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 51.1 bits (123), Expect = 1e-08
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCFC 161
C C DG CI R C+ ++DC DGSDE +C + C+ + C+ C
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 61
Score = 49.6 bits (119), Expect = 3e-08
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
C C CI + C+ + DC DGSDE
Sbjct: 42 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 76
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 50.7 bits (122), Expect = 1e-08
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCFCS 162
C +C G CI C+ + DC D SDE+ C C F
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESAS-----------CAYPTCFPLTQFTC 53
Query: 163 EDGTYIPGDL 172
+G I +
Sbjct: 54 NNGRCININW 63
Score = 48.8 bits (117), Expect = 8e-08
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
C +G CI C+ + DC D SDE C
Sbjct: 46 FPLTQFTCNNGRCININWRCDNDNDCGDNSDEAGC 80
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 49.1 bits (118), Expect = 2e-08
Identities = 14/35 (40%), Positives = 15/35 (42%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
C C G CI C+G DC D SDE C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 48.8 bits (117), Expect = 3e-08
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 101 PLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
P CQ G AC + CI+ C+G+ DC D SDE
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 48.8 bits (117), Expect = 3e-08
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCD 138
C C G CI C+G+ DC D SDE +
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 53.7 bits (128), Expect = 8e-08
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 99 DEPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDS--ENDPNRAPPCDPAVCVL 156
C+ C DG CI C+ E DC D SDE C + + C C+
Sbjct: 211 AVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECIT 270
Query: 157 PDCFC 161
D C
Sbjct: 271 LDKVC 275
Score = 52.1 bits (124), Expect = 2e-07
Identities = 17/73 (23%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
Query: 99 DEPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPD 158
C C CI + C+ + DC DGSDE D + C
Sbjct: 123 PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYV--FQGDSSPCS-AF 179
Query: 159 CFCSEDGTYIPGD 171
F G I
Sbjct: 180 EFHCLSGECIHSS 192
Score = 51.7 bits (123), Expect = 3e-07
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 99 DEPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCV--- 155
C C DG CI R C+ ++DC DGSDE +C + C+ + C+
Sbjct: 84 PPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQL 143
Query: 156 -----LPDCFCSED 164
PDC D
Sbjct: 144 WACDNDPDCEDGSD 157
Score = 49.4 bits (117), Expect = 2e-06
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 103 CQDGFLACGD--GACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCF 160
C+ G +CG CI + C+G+ DC++GSDE C + C C+
Sbjct: 47 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFV 106
Query: 161 C 161
C
Sbjct: 107 C 107
Score = 48.3 bits (114), Expect = 5e-06
Identities = 18/68 (26%), Positives = 21/68 (30%)
Query: 94 PLLYTDEPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAV 153
+ D C C G CI C+G DC D SDE C C
Sbjct: 167 YVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGN 226
Query: 154 CVLPDCFC 161
C+ C
Sbjct: 227 CIHGSRQC 234
Score = 44.8 bits (105), Expect = 5e-05
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCFC- 161
C+ C DG CI C+G +C DGSDE+ C C D C
Sbjct: 6 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE----------TCLSVTCKSGDFSCG 55
Query: 162 SEDGTYIPGD 171
IP
Sbjct: 56 GRVNRCIPQF 65
Score = 41.7 bits (97), Expect = 5e-04
Identities = 17/72 (23%), Positives = 20/72 (27%), Gaps = 4/72 (5%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDE-NTCDSENDPNRAPPCDPAVCVLPDC-- 159
C G CI CN +DC D SDE N+ VC
Sbjct: 256 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGY 315
Query: 160 -FCSEDGTYIPG 170
DG +
Sbjct: 316 ECLCPDGFQLVA 327
Score = 32.5 bits (73), Expect = 0.32
Identities = 18/127 (14%), Positives = 32/127 (25%), Gaps = 11/127 (8%)
Query: 43 DNCRDVIQCTSSGLQAIRCPAGLYFDIEKQTCDWKG--------AVKNCKLKNKERKVKP 94
C +V C +C +G ++K C+ +K C
Sbjct: 247 VGCVNVTLCEGPNK--FKCHSGECITLDKV-CNMARDCRDWSDEPIKECGTNECLDNNGG 303
Query: 95 LLYTDEPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVC 154
+ L C DG + C +C D + + C+
Sbjct: 304 CSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQ 363
Query: 155 VLPDCFC 161
+ P
Sbjct: 364 LDPHTKA 370
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan,
TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter
pylori}
Length = 326
Score = 52.9 bits (127), Expect = 8e-08
Identities = 44/259 (16%), Positives = 80/259 (30%), Gaps = 36/259 (13%)
Query: 212 DIKATFF-VSHKYTNY-SAVQELHRKGHEVAVHSITHNDDENFWSNATVDDWAKEMAGMR 269
+ AT+F H + ++ + GHEV H + N +E +
Sbjct: 87 HLPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYS-------HENPIAMSTKQEEDVLL 139
Query: 270 IIAEKYANLSDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITA------PLSNPPLW 323
E +L+ + G AP+ N ++ + F YD ++ + W
Sbjct: 140 KSVELIKDLTGKAPTGYVAPWWEF-SNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSW 198
Query: 324 PYTMYFRMPHRCHGNLQHCPTRSHAVWEMVMN-ELDRREDPNFDEYLPGCAMVDSCSNIL 382
Y L + E+ N LD F + P +
Sbjct: 199 SKIDYSLEAKDWMKPLIR--GVETNLVEIPANWYLDDLPPMMFIKKSPNSFG------FV 250
Query: 383 TGDQFYNFLNHNFDRHYDQ-NRAPLGLYFHAAWLKNNP---EFLDAFLYWVDEIIERHKD 438
+ FD Y + + A + H + P + + E I +H+
Sbjct: 251 SPRDIGQMWIDQFDWVYREMDYAVFSMTIH-PDVSARPQVLLMHEKII----EHINKHEG 305
Query: 439 VYFVTMTQVIQWI--QNPR 455
V +VT ++ +NPR
Sbjct: 306 VRWVTFNEIADDFLKRNPR 324
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 53.0 bits (127), Expect = 1e-07
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCFCS 162
D F C +G I + C+G DC D SDE C + C VC+ C+
Sbjct: 204 PMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKACQGKGFH--CKSGVCIPSQYQCN 261
Query: 163 EDGTYIPGD 171
+ I G+
Sbjct: 262 GEVDCITGE 270
Score = 35.3 bits (81), Expect = 0.044
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 99 DEPLCQDGF---LACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCV 155
DE C+ C G CI CNGE DC G DE C + +
Sbjct: 234 DELCCKACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADM 293
Query: 156 LPDCFCSED 164
+ +
Sbjct: 294 DAERRRIKS 302
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 53.3 bits (127), Expect = 1e-07
Identities = 18/77 (23%), Positives = 22/77 (28%)
Query: 94 PLLYTDEPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAV 153
+ D C C G CI C+G DC D SDE C C
Sbjct: 185 YVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGN 244
Query: 154 CVLPDCFCSEDGTYIPG 170
C+ C +
Sbjct: 245 CIHGSRQCDREYDCKDM 261
Score = 52.9 bits (126), Expect = 2e-07
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 99 DEPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVL-- 156
C C DG CI R C+ ++DC DGSDE +C + C+ + C+
Sbjct: 102 PPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQL 161
Query: 157 ------PDCFCSED 164
PDC D
Sbjct: 162 WACDNDPDCEDGSD 175
Score = 51.8 bits (123), Expect = 3e-07
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSEN--DPNRAPPCDPAVCVLPDCF 160
C+ C DG CI C+ E DC D SDE C + + C C+ D
Sbjct: 233 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKV 292
Query: 161 C 161
C
Sbjct: 293 C 293
Score = 48.7 bits (115), Expect = 3e-06
Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCFCS 162
C C CI + C+ + DC DGSDE D + C F
Sbjct: 145 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYV--FQGDSSPCS-AFEFHC 201
Query: 163 EDGTYIPG 170
G I
Sbjct: 202 LSGECIHS 209
Score = 48.3 bits (114), Expect = 4e-06
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 103 CQDGFLACGD--GACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCF 160
C+ G +CG CI + C+G+ DC++GSDE C + C C+
Sbjct: 65 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFV 124
Query: 161 CSEDGTYIPGD 171
C D + G
Sbjct: 125 CDSDRDCLDGS 135
Score = 45.6 bits (107), Expect = 3e-05
Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 4/73 (5%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPC-DPAVCVLPDC-- 159
C G CI CN +DC D SDE + + VC
Sbjct: 274 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGY 333
Query: 160 -FCSEDGTYIPGD 171
DG +
Sbjct: 334 ECLCPDGFQLVAQ 346
Score = 45.2 bits (106), Expect = 4e-05
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCFC- 161
C+ C DG CI C+G +C DGSDE+ C C D C
Sbjct: 24 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE----------TCLSVTCKSGDFSCG 73
Query: 162 SEDGTYIPGD 171
IP
Sbjct: 74 GRVNRCIPQF 83
Score = 28.6 bits (63), Expect = 5.8
Identities = 9/61 (14%), Positives = 15/61 (24%)
Query: 101 PLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCF 160
L C DG + C +C D + + C+ + P
Sbjct: 328 DLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTK 387
Query: 161 C 161
Sbjct: 388 A 388
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, carbohydrate
esterase family 4; 2.01A {Mycobacterium smegmatis}
Length = 300
Score = 52.0 bits (125), Expect = 1e-07
Identities = 44/257 (17%), Positives = 77/257 (29%), Gaps = 70/257 (27%)
Query: 212 DIKATFF-VSHKYTNY-SAVQELHRKGHEVAVHSITHNDDENFWSNATVDDWAKEMAGMR 269
++ TFF + + ++ + R GHE+A H H D E +
Sbjct: 75 NVPGTFFVPGYTAHRHPEPIRSIARAGHEIAHHGYLHESLVGA-------DEDTERKILT 127
Query: 270 IIAEKYANLSDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYF 329
E ++ VG RAP + + ++ E FLYDST M
Sbjct: 128 RGIEALEEVAGVHPVGYRAPMWEM-NWHTPKLLAEFGFLYDST-------------LMDS 173
Query: 330 RMPHRCHGNLQHCPTRSHAVWEMVMN-ELDRREDPNFDEYLPGCAMVDSCSNILTGDQFY 388
P+ ++ E+ ++ LD D ++P +G
Sbjct: 174 DHPYE-------LAVGDGSLVELPVSWALD---DWQQYCFVPD----------FSGTGLI 213
Query: 389 NFLNHNFDRHYDQ----NRAP--LGLYFH---------AAWLKNNPEFLDAFLYWVDEII 433
+ + L H AA L+ EF+ +
Sbjct: 214 ETPAKAIELWRAELNAMRDIGGAWVLTNHPFLSGRPGRAAALR---EFIAE--------V 262
Query: 434 ERHKDVYFVTMTQVIQW 450
DV+ M+Q+ +
Sbjct: 263 CAMDDVWVAGMSQIAEH 279
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 47.0 bits (112), Expect = 1e-07
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 98 TDEPLCQDGFLACGDGA-CIERGLFCNGEKDCNDGSDENTC 137
+ + C G+ CG+ C+ + L CNG DC + +DE+ C
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 46.9 bits (112), Expect = 1e-07
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 103 CQDGFLACGDG-ACIERGLFCNGEKDCNDGSDENTCDS 139
C C DG +CI C+G DC D SDE C +
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 46.5 bits (111), Expect = 2e-07
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 100 EPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
C+ C + CI C+ + DC D SDE+ C
Sbjct: 5 AKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase,
divale metal cation dependent, carbohydrate esterase
family 4; 1.45A {Streptococcus mutans UA159}
Length = 311
Score = 51.1 bits (122), Expect = 3e-07
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 22/120 (18%)
Query: 180 MITITFDDAINNNNIA-----LYKEMFNGKRKNPNGCDIKATFFV---SHKYTNYSAVQE 231
++ +TFDD ++ N L +++ + ATFF+ + +Q
Sbjct: 108 LVFLTFDDGVDPNMTPKILDVL-------AQQH-----VHATFFLVGCNITDKVKPILQR 155
Query: 232 LHRKGHEVAVHSITHNDDENFW-SNATVDDWAKEMAGMRIIAEKYANLSDNSVVGVRAPY 290
+GH + +HS +H + E+ + + + + V R P
Sbjct: 156 QITEGHALGIHSFSHVYSLLYPNRVGNTQQIVSEVTRTQNALKDQLGQNFKTGV-WRYPG 214
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 44.2 bits (105), Expect = 1e-06
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 103 CQDGFLAC-GDGACIERGLFCNGEKDCNDGSDENTCDS 139
C C DG CI C+G+ DC D SDE +C+
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG 41
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 47.9 bits (113), Expect = 2e-06
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 99 DEPLCQDGFLACG--DGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDP 151
++P C + CG D CI + C+G DC +G DE C D
Sbjct: 51 EDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDV 105
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 43.1 bits (102), Expect = 2e-06
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 103 CQDGFLACGDGA--CIERGLFCNGEKDCNDGSDENTCDS 139
C+ ++CG + CI C+GE DC+ G DE C +
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 43.5 bits (103), Expect = 2e-06
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 98 TDEPLCQDGFLACGDG-ACIERGLFCNGEKDCNDGSDENTC 137
++ C +C C+ C+G+KDC DG+DE+
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase,
peptidoglycan deacetylase, metalloenzyme, D275N mutant,
hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae}
SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Length = 431
Score = 48.4 bits (115), Expect = 3e-06
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 163 EDGTYIPGDLPSKEVPQMITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVSHK 222
E + K+ +++ +TF+D N ++ K DIKATFFV K
Sbjct: 220 EKDAALYQSYFDKKHQKVVALTFNDGPNPATT---PQVLETLAKY----DIKATFFVLGK 272
Query: 223 YTNY--SAVQELHRKGHEVAVHSITHND 248
+ V+ + +GH V HS +H
Sbjct: 273 NVSGNEDLVKRIKSEGHVVGNHSWSHPI 300
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 47.2 bits (111), Expect = 3e-06
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 98 TDEPLCQDGFLACGD--GACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCV 155
+E C + C CI LFC+GEKDC DGSDE+ + +
Sbjct: 49 LEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLAT 108
Query: 156 LPDC 159
C
Sbjct: 109 WTSC 112
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 44.1 bits (104), Expect = 3e-06
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 99 DEPLCQDGFLAC-GDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVC 154
+ C +C G C+ C+G+KDC DG+DE+ +
Sbjct: 5 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGST 61
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR
{Tachypleus tridentatus} SCOP: g.31.1.1
Length = 74
Score = 43.3 bits (102), Expect = 6e-06
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 43 DNCRDVIQCTSSGLQAIRCPAGLYFDIEKQTCDWKGAVKNCKLKNKERKV 92
+C C + CP GL+++ + CDW C NKE +
Sbjct: 22 YSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAG-CTSVNKECHL 70
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 41.7 bits (98), Expect = 1e-05
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 98 TDEPLCQDGFLAC-----GDGACIERGLFCNGEKDCNDGSDENTC 137
++ C G C G C + C+G DC+DG DE C
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 41.3 bits (97), Expect = 1e-05
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 103 CQDGFLACGD-----GACIERGLFCNGEKDCNDGSDENTCDS 139
C G C + G C + C+G DC+DG DE C +
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural
genomics, seattle structural genomic for infectious
disease; 1.85A {Burkholderia pseudomallei}
Length = 321
Score = 46.1 bits (109), Expect = 1e-05
Identities = 39/255 (15%), Positives = 67/255 (26%), Gaps = 51/255 (20%)
Query: 212 DIKATFF-VSHKYTNY-SAVQELHRKGHEVAVHSITHNDDENFWSNATVDDWAKEMAGMR 269
+ T F V + + GHE+A H ++ +E MR
Sbjct: 99 GLPLTVFGVGMAIERHPELARAFVELGHEIACHGWRWIHYQDM-------TPEREAEHMR 151
Query: 270 IIAEKYANLSDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYF 329
+ E ++ +G + + E FLY
Sbjct: 152 LGMEAIERVTGVRPLGWYTGRDSPNTHRL--VAEYGGFLY------------------DS 191
Query: 330 RMPHRCHGNLQHCPTRSHAVWEMVMNELDRREDPNFDEYLPGCAMVDSCSNILTGDQFYN 389
+ + D N D + T D F++
Sbjct: 192 DHYGDDL--PFWMDVEVSGGASVPQLIVPYTLDAN-DMRFA------TPQGFNTADHFFH 242
Query: 390 FLNHNFDRHYDQNRAPLGLY---FHAAWLKNNP---EFLDAFLYWVDEIIERHKDVYFVT 443
+L FD Y++ + H L P L FL + IERH V+
Sbjct: 243 YLRDAFDVLYEEGDEAPKMMSIGMH-CRLLGRPGRFRALQRFL----DHIERHDRVWVAR 297
Query: 444 MTQVIQWI--QNPRT 456
++ + +P
Sbjct: 298 RVEIARHWREHHPYR 312
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Length = 240
Score = 45.0 bits (107), Expect = 2e-05
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 180 MITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVSHKYTNY--SAVQELHRKGH 237
I +TFD+ N ++ + +K+ + TFFV+ + ++ + +GH
Sbjct: 44 TIYLTFDNGYENGYTP---KVLDVLKKH----RVTGTFFVTGHFVKDQPQLIKRMSDEGH 96
Query: 238 EVAVHSITH 246
+ HS H
Sbjct: 97 IIGNHSFHH 105
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase,
bacterial cell WALL, carbohydrate esterase; 1.7A
{Bacillus anthracis} SCOP: c.6.2.3
Length = 247
Score = 45.0 bits (107), Expect = 2e-05
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 180 MITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVSHKY--TNYSAVQELHRKGH 237
I +TFD+ N ++ + ++ + ATFFV+ Y T + + +GH
Sbjct: 56 DIYLTFDNGYENGYTG---KILDVLKEK----KVPATFFVTGHYIKTQKDLLLRMKDEGH 108
Query: 238 EVAVHSITH 246
+ HS +H
Sbjct: 109 IIGNHSWSH 117
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native
protein, microsporidian, chitin deacetylase, hydrolase,
inactive; 1.50A {Encephalitozoon cuniculi}
Length = 254
Score = 44.3 bits (105), Expect = 3e-05
Identities = 21/129 (16%), Positives = 31/129 (24%), Gaps = 17/129 (13%)
Query: 169 PGDLPS-KEVPQMITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFV---SHKYT 224
D+P MI I F D +KATF
Sbjct: 15 EADVPDVCTNSGMIAINFVDGPVRGVTDRILNTL--DELG-----VKATFSFTVNQKAVG 67
Query: 225 NY-SAVQELHRKGHEVAVHSITHNDDENFWSNATVDDWAKEMAGMRIIAEKYANLSDNSV 283
N + +GH VA+ D+ + D + + LS +
Sbjct: 68 NVGQLYRRAVEEGHNVALRVDPSMDEGY--QCLSQDALENNVDREI---DTIDGLSGTEI 122
Query: 284 VGVRAPYLR 292
P
Sbjct: 123 RYAAVPICN 131
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 43.7 bits (102), Expect = 5e-05
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 98 TDEPLCQDGFLACG--DGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCV 155
+ C+ CG + CI L C+G KDC++ DE D +
Sbjct: 48 IEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE---DPDVCDTSVVKAGNVFSG 104
Query: 156 LPDCFCSEDGT 166
Sbjct: 105 TSTWHGCLARE 115
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme,
dockerin type I\:polysaccharide...; acetyl-xylan,
esterases, metal-ION; 1.05A {Clostridium thermocellum}
SCOP: c.6.2.3 PDB: 2c79_A
Length = 216
Score = 43.4 bits (103), Expect = 5e-05
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 172 LPSKEVPQMITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFV---SHKYTNYSA 228
+P+ +++ +TFDD +N A + + K ++KATF V + +
Sbjct: 1 MPAN---KLVALTFDDGPDNVLTA---RVLDKLDKY----NVKATFMVVGQRVNDSTAAI 50
Query: 229 VQELHRKGHEVAVHSITHND 248
++ + GHE+ HS +++
Sbjct: 51 IRRMVNSGHEIGNHSWSYSG 70
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A
{Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Length = 308
Score = 43.0 bits (101), Expect = 1e-04
Identities = 43/243 (17%), Positives = 66/243 (27%), Gaps = 51/243 (20%)
Query: 215 ATFFVSHKYTNYSAVQELHRK-GHEVAVHSITHNDDENFWSNATVDDWAKEMAGMRIIAE 273
F V+ + V GHE+ H D + D A+E M
Sbjct: 98 TIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWIDYQYM-------DEAQEREHMLEAIR 150
Query: 274 KYANLSDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPH 333
L+ +G N + +MEE FLYD + P W PH
Sbjct: 151 ILTELTGERPLGWYTGRTGP--NTRRLVMEEGGFLYDCDTYD--DDLPYWEPNNPTGKPH 206
Query: 334 RCHGNLQHCPTRSHAVWEMVMNELDRREDPNFDEYLPGCAMVDSCSNILTGDQFYNFLNH 393
+ + + D GD F+ +L
Sbjct: 207 ---------------LVIPYTLDTN-------DMRFT------QVQGFNKGDDFFEYLKD 238
Query: 394 NFDRHYDQNRAPLGLY---FHAAWLKNNP---EFLDAFLYWVDEIIERHKDVYFVTMTQV 447
FD Y + + H L P L F+ E + H+ V+F +
Sbjct: 239 AFDVLYAEGAEAPKMLSIGLH-CRLIGRPARLAALQRFI----EYAKSHEQVWFTRRVDI 293
Query: 448 IQW 450
+
Sbjct: 294 ARH 296
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Length = 230
Score = 41.9 bits (99), Expect = 2e-04
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 18/78 (23%)
Query: 177 VPQMITITFDD--AINNNNI--ALYKEMFNGKRKNPNGCDIKATFFV--SHKYTNYSAVQ 230
P I +TFDD + + L R + +ATFFV N +Q
Sbjct: 31 TPNTIALTFDDGPSEYTPQLLDLL-------SRYS-----ARATFFVLGDAAAQNPGLLQ 78
Query: 231 ELHRKGHEVAVHSITHND 248
+ +GH+V H+ H
Sbjct: 79 RMRDEGHQVGAHTYDHVS 96
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A
{Streptomyces lividans} SCOP: c.6.2.3
Length = 195
Score = 40.2 bits (95), Expect = 5e-04
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 212 DIKATFFVSHKYTNY--SAVQELHRKGHEVAVHSITHND 248
++AT F +Y S V+ G VA HS TH
Sbjct: 30 GLRATMFNQGQYAAQNPSLVRAQVDAGMWVANHSYTHPH 68
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4
carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum}
SCOP: c.6.2.3
Length = 254
Score = 40.9 bits (96), Expect = 5e-04
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 23/83 (27%)
Query: 177 VPQMITITFDD--AINNNNI--ALYKEMFNGKRKNPNGCDIKATFFV-------SHKYTN 225
P ++ +T+DD + L + D++ATFFV +N
Sbjct: 40 QPGLVALTYDDGPFTFTPQLLDILKQN------------DVRATFFVNGNNWANIEAGSN 87
Query: 226 YSAVQELHRKGHEVAVHSITHND 248
++ + GH V H+ H D
Sbjct: 88 PDTIRRMRADGHLVGSHTYAHPD 110
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 39.3 bits (92), Expect = 0.003
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 43 DNCRDVIQCTSSGLQAIRCPAGLYFDIEKQTCDW 76
C + L CP GL F + C W
Sbjct: 411 RERSSFYSCAAGRLFQQSCPTGLVFSNSCKCCTW 444
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 38.8 bits (89), Expect = 0.004
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 98 TDEPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVC 154
+ C F G C++R L CNG++DC DGSDE+ C+ + +
Sbjct: 61 VRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIP 117
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 38.3 bits (88), Expect = 0.006
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 98 TDEPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLP 157
+E C++ F C G CI R L CNGE DC D SDE C C +P
Sbjct: 114 IEEADCKNKF-RCDSGRCIARKLECNGENDCGDNSDERDC-----GRTKAVCTRKYNPIP 167
Query: 158 DCFCSEDGTYIPGDLPSKEVPQM 180
+G + P EV
Sbjct: 168 SVQLMGNGFHFLAGEPRGEVLDN 190
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.007
Identities = 32/224 (14%), Positives = 57/224 (25%), Gaps = 115/224 (51%)
Query: 336 HGNLQHC---PTRSHAV----WE-------------------------------MVMNEL 357
HG+L+H PT S + E V + +
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 358 DRREDPNFDEYLPGCAMVDSCSNILTGDQF-YNFLNHNFDRH------YDQNRAPLGL-- 408
+ + FD+ L + L +F +L N D H +N L
Sbjct: 73 EPSKVGQFDQVL---------NLCL--TEFENCYLEGN-DIHALAAKLLQENDTTLVKTK 120
Query: 409 -----YFHA--------------AWLK-----------------NNPEFLD--AFLY--- 427
Y A A + N ++ + LY
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 428 --WVDEIIERH-------------KDVYFVTMTQVIQWIQNPRT 456
V ++I+ + F +++W++NP
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Score = 33.5 bits (76), Expect = 0.20
Identities = 62/378 (16%), Positives = 118/378 (31%), Gaps = 117/378 (30%)
Query: 187 DAINNNNIALYKEMFNGKRKNPNGCDIKATFF--VSHKYTNY-SAVQELHRKGHEVAVHS 243
A+ N L +F G+ N + +F + Y Y V +L + E
Sbjct: 147 RAVGEGNAQLVA-IFGGQ-GNTD------DYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 244 ITHNDDENFWSNATVD--DWAKEMAGMRIIAEKYANLSDNSV----VGVR--APYLRVGG 295
I D ++ +W + + + Y L + +GV A Y+
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPS--NTPDKDY--LLSIPISCPLIGVIQLAHYVVTAK 254
Query: 296 NNQFTMMEEQAFLYDST------ITA-PLSNPPLWP---------YTMYFRMPHRCHGNL 339
FT E +++L +T +TA ++ W T+ F + RC+
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY--- 311
Query: 340 QHCPTRSHAVWEMVMNELDRRED-PN-------------------FDEYLPGC-----AM 374
+ P S ++ + L+ E P+ + +LP ++
Sbjct: 312 EAYPNTSLPP-SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 375 VDSCSN-ILTG--DQFYNFLNHNFDR-----HYDQNRA--------------PLGLYFHA 412
V+ N +++G Y LN + DQ+R P+ FH+
Sbjct: 371 VNGAKNLVVSGPPQSLYG-LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 413 AWLKNNPEFLDAFLYWVDEIIERHKD----VYFVT--------------------MTQVI 448
L + ++ L + + KD VY + +
Sbjct: 430 HLLVPASDLINKDL-VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 449 QWIQNPRT-ITEVKNFDP 465
+W + T + +F P
Sbjct: 489 KWETTTQFKATHILDFGP 506
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.091
Identities = 58/410 (14%), Positives = 107/410 (26%), Gaps = 115/410 (28%)
Query: 127 DCNDGSDE--NTCDSE--NDPNRAPPCDPAVCVLPDCFCSEDGTYIPGDLPSKEVPQMIT 182
DC D D + E + + L S+ ++ K V +++
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-----QEEMVQKFVEEVLR 88
Query: 183 ITFD---DAINNNNI--ALYKEMFNGKRKNP-NGCDIKATFFVS--HKYTNY-SAVQELH 233
I + I ++ M+ +R N + A + VS Y A+ EL
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL- 147
Query: 234 RKGHEVAVH-------------------SITHNDDENFWSNATVDDWAKEMAGM-----R 269
R V + D + FW N + + + M
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 270 IIAEKYANLSDNSVVGVRAPYLRVGGNNQFTMMEEQ---AFLYDSTITAPLSNPPLWPYT 326
I + + SD+S ++ + + + + L + + N W
Sbjct: 208 QIDPNWTSRSDHSS-NIKLRIHSIQAELRRLLKSKPYENCLL----VLLNVQNAKAWNA- 261
Query: 327 MYFRMPHRCHGNLQHCP----TRSHAVWEMVMNELDRREDPNFDEYLPGCAMVDSCSNIL 382
F NL C TR V + + + D + L
Sbjct: 262 --F--------NLS-CKILLTTRFKQVTDFLSAA--TTTHISLDHHSMT----------L 298
Query: 383 TGDQ----FYNFLNHNFD--RHYDQNRAPLGLYFHAAWLKNNPEFLDAFLYW-------V 429
T D+ +L+ P L A +++ D W +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD---NWKHVNCDKL 355
Query: 430 DEIIE-----------RH---------KDVYFVTMTQVIQWIQNPRTITE 459
IIE R + T+ + W ++
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
>3hft_A WBMS, polysaccharide deacetylase involved in O-AN biosynthesis;
structural genomics, joint center for structural
genomics; HET: MSE; 1.90A {Bordetella bronchiseptica}
Length = 257
Score = 33.6 bits (76), Expect = 0.12
Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 25/141 (17%)
Query: 181 ITITFD-DAINNNNIALYKEMFNGKRKNPNGCDIKATFFVSHKYTNYSAVQELHRKGH-E 238
I +TFD D + + ++ G + AT+F +H + ++ + R E
Sbjct: 39 IFLTFDIDWAADFVLQDTIDLIEG-------AGVCATWFATH---STPLLENIRRNPLFE 88
Query: 239 VAVHSITHNDDENFWSNATVDDWAKEMAGMRIIAEKYANLSDNSVVGVRAPYLRVGGNNQ 298
+ VH NF ++ I ++ L+ V VR+ L V +
Sbjct: 89 LGVH-------PNFNPLLAGAHAEG----VQEILDRTLELAPGC-VSVRSHSL-VQATSI 135
Query: 299 FTMMEEQAFLYDSTITAPLSN 319
M E+ YD I P
Sbjct: 136 LNMFGERRLRYDCNILVPWDA 156
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.51
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 3 EAIRVKRQEETSTKKEESFEHELCKDKDAGEWFR 36
+ R++ + S E+ + + KD + EW +
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLE--EWNQ 125
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 31.7 bits (72), Expect = 0.54
Identities = 13/80 (16%), Positives = 17/80 (21%), Gaps = 2/80 (2%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCFCS 162
C+ + F E D C + A C C+
Sbjct: 283 CRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEAC--QKLCTNAVRCQFFTYTPAQASCN 340
Query: 163 EDGTYIPGDLPSKEVPQMIT 182
E L S P I
Sbjct: 341 EGKGKCYLKLSSNGSPTKIL 360
Score = 30.6 bits (69), Expect = 1.5
Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 8/69 (11%)
Query: 98 TDEPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLP 157
T+ CQ +C E C K ++GS +
Sbjct: 322 TNAVRCQFFTYTPAQASCNEGKGKCYL-KLSSNGSPTKILHGRG-------GISGYTLRL 373
Query: 158 DCFCSEDGT 166
+E T
Sbjct: 374 CKMDNECTT 382
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 31.0 bits (70), Expect = 0.86
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 99 DEPLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPD 158
+ C G C E++ DG DE++ + + P
Sbjct: 72 EGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAI--EGATATSEYQTFFNPA 129
Query: 159 CFCS 162
F S
Sbjct: 130 TFGS 133
>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor,
PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis
thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C
Length = 183
Score = 30.1 bits (67), Expect = 0.99
Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 50 QCTSSGLQAIRCPAGLYFDIEKQTCD---WKGAVKNCKLKNKERKV 92
QC+S+ ++ I+ P L + I ++ + +K + C ++ K+ +V
Sbjct: 26 QCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEV 71
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; NMR {Mus musculus} SCOP:
d.60.1.4 PDB: 4a1m_A 2hva_A
Length = 195
Score = 30.2 bits (67), Expect = 1.1
Identities = 10/77 (12%), Positives = 22/77 (28%)
Query: 276 ANLSDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRC 335
+ + + VGG N + + ++FR+P++
Sbjct: 54 KPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQF 113
Query: 336 HGNLQHCPTRSHAVWEM 352
G+ S + E
Sbjct: 114 QGSPPAPSDESVKIEER 130
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 30.8 bits (69), Expect = 1.2
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCF-C 161
C+ + C +G G C+ G C+ + + + + + C
Sbjct: 425 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 484
Query: 162 SEDGTYIPG 170
S G + G
Sbjct: 485 SGLGDCVCG 493
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 30.2 bits (67), Expect = 1.7
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 103 CQDGFLACGD-GACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVL 156
+ C G C+ R L CNG+ DC D SDE C +
Sbjct: 66 VRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWGIGS 120
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions,
DNA HYDR sodium ION, quadruplex DNA, DNA-binding
protein-DNA complex; 1.86A {Sterkiella nova} SCOP:
b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A
1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A
1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Length = 495
Score = 30.0 bits (66), Expect = 2.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 415 LKNNPEFLDAFLYWVDEIIERHKDVYFVTMTQVI 448
L+++ E L F +VD ++ER Y + T++I
Sbjct: 461 LEDSAELLTKFNSYVDAVVERRNGFYLIKDTKLI 494
>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid
receptor, crystal, high resolution, PP2C, HORM
receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A*
3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A
3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*
Length = 190
Score = 29.0 bits (64), Expect = 2.5
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 50 QCTSSGLQAIRCPAGLYFDIEKQTCD---WKGAVKNCKLKNKERKV 92
CTS Q I PA + + + ++ + +K VK C+L + + V
Sbjct: 34 TCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDV 79
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.8
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 13/28 (46%)
Query: 303 EEQAF--------LYDSTITAPLSNPPL 322
E+QA LY A S P L
Sbjct: 18 EKQALKKLQASLKLY-----ADDSAPAL 40
>4sgb_I Potato inhibitor, PCI-1; complex(serine proteinase-inhibitor);
2.10A {Streptomyces griseus} SCOP: g.69.1.1 PDB: 2jzm_A
1tih_A 1qh2_B
Length = 51
Score = 26.1 bits (57), Expect = 4.6
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 122 CNGEKDCNDGSDENT--CDSENDPNRAPPC 149
C G K CN S C+ ++DP + C
Sbjct: 7 CAGYKGCNYYSANGAFICEGQSDPKKPKAC 36
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase,
hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A
Length = 1032
Score = 28.7 bits (64), Expect = 5.3
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 365 FDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYDQNRAPLGLYFHAAWLKNNPEFLDA 424
FD+ G ++D ++ T F H + +A +L +NPE+ A
Sbjct: 407 FDKL--GFWVIDEA-DLETHGVQEPFNRHTNLEAEYPDTKNKLYDVNAHYLSDNPEYEVA 463
Query: 425 FLYWVDEIIERHK 437
+L +++ R
Sbjct: 464 YLDRASQLVLRDV 476
>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4
carbohydrate esterase, TIM barrel, hydrolase, deace
carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia
coli} PDB: 4f9j_A*
Length = 618
Score = 28.4 bits (63), Expect = 5.6
Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 34/99 (34%)
Query: 170 GDLPSKEVPQMITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVS--------- 220
LP K V +TFDD + Y +F + A +
Sbjct: 65 KPLPEKAV----VLTFDDGYQSF----YTRVFPILQAF----QWPAVWAPVGSWVDTPAD 112
Query: 221 ------------HKYTNYSAVQELHRKGH-EVAVHSITH 246
+ + V+E+ R E+A H+
Sbjct: 113 KQVKFGDELVDREYFATWQQVREVARSRLVELASHTWNS 151
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 27.7 bits (61), Expect = 6.1
Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 7/64 (10%)
Query: 103 CQDGFLACGDGACIE--RGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCF 160
Q G+ G C +G C + C + C PN C L F
Sbjct: 62 SQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLC-----PNNLCCSQWGFCGLGSEF 116
Query: 161 CSED 164
C
Sbjct: 117 CGGG 120
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 28.6 bits (64), Expect = 6.4
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 418 NPEFLDAFLYWVDEIIERHKDVYFVTMTQVIQWIQNPRTITEVKNFDPW 466
N ++L + ++ ++Y +T+ W RT W
Sbjct: 232 NAKYLYYGEDICKKFYDKGNNIYELTVDFESTWGLLIRTSNA----SFW 276
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 28.2 bits (63), Expect = 6.7
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 229 VQELHRKGHEVAVHS 243
++EL +GH V
Sbjct: 28 IRELVARGHRVTYAI 42
>3e2q_A Proline oxidase, proline dehydrogenase; proline utilization A,
PUTA, flavoenzyme, DNA-binding, FAD, flavoprotein,
multifunctional enzyme, NAD; HET: FAD 1PE; 1.75A
{Escherichia coli} PDB: 3e2r_A* 3e2s_A* 1tj2_A* 1tiw_A*
1tj0_A* 1tj1_A* 2fzm_A* 2fzn_A* 3itg_A*
Length = 551
Score = 28.1 bits (62), Expect = 7.3
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 173 PSKEVPQMITITFDDAINNNNIALYKEMFNGKRKNPNGCDI 213
P V ++ + + I L ++++ R N G D+
Sbjct: 499 PVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDL 539
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 28.3 bits (63), Expect = 7.6
Identities = 12/49 (24%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 105 DGF--LACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDP 151
GF A G C G N + S +P P DP
Sbjct: 158 QGFRTFAKNGGCCGGNGNNPNCCMNQKKDHTVTLSPSLFNPEEFMPLDP 206
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.442
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,711,461
Number of extensions: 472170
Number of successful extensions: 1364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1333
Number of HSP's successfully gapped: 127
Length of query: 476
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 379
Effective length of database: 3,993,456
Effective search space: 1513519824
Effective search space used: 1513519824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.9 bits)