RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16052
(476 letters)
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 49.7 bits (119), Expect = 5e-09
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
C C DG CI R C+ ++DC DGSDE +C
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37
>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 49.3 bits (118), Expect = 5e-09
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDS 139
C+ C DG CI C+ E DC D SDE C +
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVN 39
>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 49.0 bits (117), Expect = 9e-09
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
C+ C DG CI C+G +C DGSDE+
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE 42
>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 37
Score = 48.6 bits (116), Expect = 1e-08
Identities = 14/35 (40%), Positives = 15/35 (42%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
C C G CI C+G DC D SDE C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 48.6 bits (116), Expect = 1e-08
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSEN 141
C C G CI C+G+ DC D SDE + N
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTN 43
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 48.6 bits (116), Expect = 1e-08
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 101 PLCQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
P CQ G AC + CI+ C+G+ DC D SDE
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 47.1 bits (112), Expect = 3e-08
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
C C CI + C+ + DC DGSDE
Sbjct: 3 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 37
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 42
Score = 45.6 bits (108), Expect = 1e-07
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 103 CQDGFLAC-GDGACIERGLFCNGEKDCNDGSDENTCDS 139
C C DG CI C+G+ DC D SDE +C+
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG 41
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3
subunit {Common earthworm (Lumbricus terrestris) [TaxId:
6398]}
Length = 41
Score = 45.2 bits (107), Expect = 2e-07
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 101 PLCQDGFLAC--GDGACIERGLFCNGEKDCNDGSDENTC 137
P C + C D CI + C+G DC +G DE C
Sbjct: 1 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 43.2 bits (102), Expect = 8e-07
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 110 CGDGACIERGLFCNGEKDCNDGSDENTCD 138
C G CI CN +DC D SDE +
Sbjct: 14 CHSGECITLDKVCNMARDCRDWSDEPIKE 42
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 42.9 bits (101), Expect = 1e-06
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 103 CQDGFLACGD--GACIERGLFCNGEKDCNDGSDENTC 137
C+ G +CG CI + C+G+ DC++GSDE C
Sbjct: 5 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 42.5 bits (100), Expect = 2e-06
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 103 CQDGFLACGDGA--CIERGLFCNGEKDCNDGSDENTCDS 139
C+ ++CG + CI C+GE DC+ G DE C +
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus
tridentatus) [TaxId: 6853]}
Length = 73
Score = 42.6 bits (100), Expect = 3e-06
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 44 NCRDVIQCTSSGLQAIRCPAGLYFDIEKQTCDWKGAVKNCKLKNKE 89
+C C + CP GL+++ + CDW C NKE
Sbjct: 23 SCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKA-GCTSVNKE 67
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2
subunit {Common earthworm (Lumbricus terrestris) [TaxId:
6398]}
Length = 41
Score = 41.8 bits (98), Expect = 3e-06
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 103 CQDGFLAC--GDGACIERGLFCNGEKDCNDGSDENTC 137
C+ C + CI L C+G KDC++ DE+
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail
(Coturnix coturnix) [TaxId: 9091]}
Length = 42
Score = 41.0 bits (96), Expect = 5e-06
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 103 CQDGFLACGD-----GACIERGLFCNGEKDCNDGSDENTC 137
C G C + G C + C+G DC+DG DE C
Sbjct: 2 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 44.1 bits (103), Expect = 1e-05
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 15/102 (14%)
Query: 177 VPQMITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVSHKY-------TNYSAV 229
P ++ +T+DD L + K+ + ++ATFFV+ +N +
Sbjct: 12 QPGLVALTYDDGPFTFTPQLLDIL---KQND-----VRATFFVNGNNWANIEAGSNPDTI 63
Query: 230 QELHRKGHEVAVHSITHNDDENFWSNATVDDWAKEMAGMRII 271
+ + GH V H+ H D S + + R I
Sbjct: 64 RRMRADGHLVGSHTYAHPDLNTLSSADRISQMRQLEEATRRI 105
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 42
Score = 39.8 bits (93), Expect = 1e-05
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 103 CQDGFLACGD--GACIERGLFCNGEKDCNDGSDENTC 137
C + C CI LFC+GEKDC DGSDE+
Sbjct: 3 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE 39
>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain
{Clostridium thermocellum [TaxId: 1515]}
Length = 204
Score = 43.7 bits (102), Expect = 2e-05
Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 17/151 (11%)
Query: 180 MITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVSHKYTNY---SAVQELHRKG 236
++ +TFDD +N A + + N +KATF V + N + ++ + G
Sbjct: 2 LVALTFDDGPDNVLTARVLDKL--DKYN-----VKATFMVVGQRVNDSTAAIIRRMVNSG 54
Query: 237 HEVAVHSITHNDDENFWSNATVDDWAKEMAGMRIIAEKYANLSDNSVVGVRAPYLRVGGN 296
HE+ HS +++ N D K +A + +KYA + R P L
Sbjct: 55 HEIGNHSWSYSGMANMSP----DQIRKSIADTNAVIQKYAG---TTPKFFRPPNLETSPT 107
Query: 297 NQFTMMEEQAFLYDSTITAPLSNPPLWPYTM 327
+ + P + +
Sbjct: 108 LFNNVDLVFVGGLTANDWIPSTTAEQRAAAV 138
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase
C-terminal domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 196
Score = 42.5 bits (99), Expect = 3e-05
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 180 MITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFV--SHKYTNYSAVQELHRKGH 237
++ +TF+D N E + + IKATFFV + N V+ + +GH
Sbjct: 2 VVALTFNDGPNPATTPQVLETL--AKYD-----IKATFFVLGKNVSGNEDLVKRIKSEGH 54
Query: 238 EVAVHSITHNDDENFWSNATVDDWAKEMAGMRIIAEK 274
V HS +H S ++D+ K++ + K
Sbjct: 55 VVGNHSWSH----PILSQLSLDEAKKQITDTEDVLTK 87
>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase
BA0424 {Bacillus anthracis [TaxId: 1392]}
Length = 235
Score = 42.2 bits (98), Expect = 5e-05
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 163 EDGTYIPGDLPSKEVPQMITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFV--S 220
++G + GD K I +TFD+ N ++ K K + ATFFV
Sbjct: 33 KNGGFYLGDTKKK----DIYLTFDNGYENGYTGKILDVL--KEKK-----VPATFFVTGH 81
Query: 221 HKYTNYSAVQELHRKGHEVAVHSITHNDDENFWSNATVDDWAKEMAGMRII 271
+ T + + +GH + HS +H D ++ ++ +
Sbjct: 82 YIKTQKDLLLRMKDEGHIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKV 132
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces
lividans [TaxId: 1916]}
Length = 192
Score = 41.8 bits (97), Expect = 5e-05
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 177 VPQMITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVSHKYTNYSA--VQELHR 234
+ +TFDD + + +L + ++ ++AT F +Y + V+
Sbjct: 3 CNGYVGLTFDDGPSGSTQSLLNAL---RQNG-----LRATMFNQGQYAAQNPSLVRAQVD 54
Query: 235 KGHEVAVHSITHNDDENFWSNATVDDWAK 263
G VA HS TH + ++
Sbjct: 55 AGMWVANHSYTHPHMTQLGQAQMDSEISR 83
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA
{Bacillus subtilis [TaxId: 1423]}
Length = 235
Score = 38.3 bits (88), Expect = 0.001
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 165 GTYIPGDLPSKEVPQMITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVSHKY- 223
+ G+ K I +TFD+ N ++ + TFFV+ +
Sbjct: 33 DAFYLGNTKEK----TIYLTFDNGYENGYTPKVLDVLKKH-------RVTGTFFVTGHFV 81
Query: 224 -TNYSAVQELHRKGHEVAVHSITHNDDENFWSNATVDDWAK 263
++ + +GH + HS H D ++ D+
Sbjct: 82 KDQPQLIKRMSDEGHIIGNHSFHHPDLTTKTADQIQDELDS 122
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 301
Score = 35.9 bits (82), Expect = 0.009
Identities = 40/230 (17%), Positives = 64/230 (27%), Gaps = 44/230 (19%)
Query: 224 TNYSAVQELHRKGHEVAVHSITHNDDENFWSNATVDDWAKEMAGMRIIAEKYANLSDNSV 283
N ++ + GHE+ H D + + M I +
Sbjct: 105 RNPEVIRAMVADGHEICSHGYRWID----YQYMDEAQEREHMLEAIRILTEL-----TGQ 155
Query: 284 VGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQHCP 343
V R G N + +MEE FLYDS P P +
Sbjct: 156 RPVGWYTGRTGPNTRRLVMEEGGFLYDSDTYDD-DLPYWDPAS----------------- 197
Query: 344 TRSHAVWEMVMNELDRREDPNFDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYDQNR 403
E + D N + G+QF+ +L FD Y++
Sbjct: 198 -----TAEKPHLVIPYTLDTNDMRFTQVQGFN-------NGEQFFQYLKDAFDVLYEEGA 245
Query: 404 AP---LGLYFHAAWLKNNPEFLDAFLYWVDEIIERHKDVYFVTMTQVIQW 450
L + H L P + A ++ H V+F + +
Sbjct: 246 TAPKMLSIGLHC-RLIGRPARMAALERFIQYAQS-HDKVWFARREDIARH 293
>d1wlha1 b.1.18.10 (A:547-647) F-actin cross-linking gelation factor
(ABP-120) repeats {Dictyostelium discoideum [TaxId:
44689]}
Length = 101
Score = 28.9 bits (64), Expect = 0.36
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 132 SDENTCDSENDPNRAPPCDPAVCVLPDCFCSEDGTYIPGDLPSKEVPQMITITFDD 187
D D PA V P + DGTY P + +I +T D
Sbjct: 33 PDGVHRTDGGDGFVVTIEGPA-PVDPVMVDNGDGTYDVEFEPKEAGDYVINLTLDG 87
>d1jb7a3 b.40.4.3 (A:329-495) Telomere end binding protein alpha
subunit {Oxytricha nova [TaxId: 200597]}
Length = 167
Score = 29.1 bits (65), Expect = 0.69
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 415 LKNNPEFLDAFLYWVDEIIERHKDVYFVTMTQVI 448
L+++ E L F +VD ++ER Y + T++I
Sbjct: 133 LEDSAELLTKFNSYVDAVVERRNGFYLIKDTKLI 166
>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease
2 (MASP-2), catalytic domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 242
Score = 29.4 bits (64), Expect = 0.76
Identities = 13/157 (8%), Positives = 41/157 (26%), Gaps = 3/157 (1%)
Query: 323 WPYTMYFRMPHRCHGNL---QHCPTRSHAVWEMVMNELDRREDPNFDEYLPGCAMVDSCS 379
+P+ + G L T +HAV+E + + L
Sbjct: 12 FPWQVLILGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSE 71
Query: 380 NILTGDQFYNFLNHNFDRHYDQNRAPLGLYFHAAWLKNNPEFLDAFLYWVDEIIERHKDV 439
+ + + + + D + + + + + + ++F+ D +
Sbjct: 72 AVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGL 131
Query: 440 YFVTMTQVIQWIQNPRTITEVKNFDPWREKCAVEEAI 476
+ + K + + ++
Sbjct: 132 TQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSV 168
>d1vl4a_ d.283.1.1 (A:) PmbA-related protein TM0727 {Thermotoga
maritima [TaxId: 2336]}
Length = 433
Score = 28.7 bits (63), Expect = 1.9
Identities = 15/130 (11%), Positives = 30/130 (23%), Gaps = 2/130 (1%)
Query: 328 YFRMPHRCHGNLQHCPTRSHAVWEMVMNELDRREDPNFDEYLP-GCAMVDSCSNILTGDQ 386
+ V ++ D P P V + + +
Sbjct: 242 MISAENVQKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEKFVLENG 301
Query: 387 FYNFLNHNFDRHYDQNRAPLGLYFHAAWLKNNPEFLDAFLYWVDEIIERHKDVYFVTMTQ 446
HN + P G F N L +E+++ +T +
Sbjct: 302 VLKTFLHNLKTARKEGVEPTGNGFVGGIRPVNL-MLMPGEKSFEELLKEMDRGVVITEVE 360
Query: 447 VIQWIQNPRT 456
+ N +
Sbjct: 361 GMHAGANSIS 370
>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor
(ABP-120) repeats {Dictyostelium discoideum [TaxId:
44689]}
Length = 108
Score = 26.9 bits (59), Expect = 2.1
Identities = 8/57 (14%), Positives = 13/57 (22%)
Query: 131 GSDENTCDSENDPNRAPPCDPAVCVLPDCFCSEDGTYIPGDLPSKEVPQMITITFDD 187
D PA + D ++DGTY + +
Sbjct: 20 NKKGEVKTYGGDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNG 76
>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 98
Score = 26.4 bits (58), Expect = 2.7
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 6/52 (11%)
Query: 142 DPNRAPPCDPAVCV------LPDCFCSEDGTYIPGDLPSKEVPQMITITFDD 187
A + V +C ++DG+ +P + IT+
Sbjct: 28 VTRGAGIGGLGITVEGPSESKINCRDNKDGSCSAEYIPFAPGDYDVNITYGG 79
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA
{Campylobacter jejuni [TaxId: 197]}
Length = 248
Score = 27.3 bits (59), Expect = 4.2
Identities = 20/175 (11%), Positives = 47/175 (26%), Gaps = 2/175 (1%)
Query: 262 AKEMAGMRIIAEKYANLSDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPP 321
AKE+ G + + N V +++ + + N + + + ++
Sbjct: 45 AKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGV 104
Query: 322 LWPYTMYFRMPHRCHGNLQHCPTRSHAVWEMVMNELDRREDPNFDEYLPGCAMVDSCSNI 381
P + A N + + A++D +
Sbjct: 105 AVPKDSNITSVEDLKDKTLLLNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDA 164
Query: 382 LTGDQFYNFLNHNFDRHYDQNRAPLGLYFHAAWL--KNNPEFLDAFLYWVDEIIE 434
L+ D F + LG A K + E + + ++ +
Sbjct: 165 LSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQ 219
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 27.1 bits (59), Expect = 5.0
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 12/77 (15%)
Query: 35 FRLVAGEGDNCRD----------VIQCTSSGLQAIRCPAGLYFDIEKQTCDWKGAVKNCK 84
+RL +GD+ + +S + IR + + ++ GA + +
Sbjct: 29 YRLFNQDGDSFGGVTIDCYGDFVLFSWYNSFVYQIRDE--IVAAFRQVYPNFLGAYEKIR 86
Query: 85 LKNKERKVKPLLYTDEP 101
K + L + P
Sbjct: 87 FKGIDNVSAHLYGQEAP 103
>d1oyvi_ g.69.1.1 (I:) Wound-induced proteinase inhibitor-II {Tomato
(Lycopersicon esculentum) [TaxId: 4081]}
Length = 116
Score = 25.6 bits (56), Expect = 7.5
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 122 CNGEKDCNDGSDENT--CDSENDPNRAPPC 149
C+G K CN + C+ E+DP R C
Sbjct: 31 CSGYKGCNYYNSFGKFICEGESDPKRPNAC 60
>d1o98a1 c.105.1.1 (A:77-310) 2,3-Bisphosphoglycerate-independent
phosphoglycerate mutase, substrate-binding domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 234
Score = 26.2 bits (57), Expect = 7.9
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 21/93 (22%)
Query: 358 DRREDPNFDEYLPGCAMVD----SCSNILTGDQFYNFLNHNFDRHYDQNRAPLGLYFHAA 413
D + +DE++ +V + I D + + D+ +
Sbjct: 146 DSYKHGIYDEFVLPSVIVREDGRPVATIQDNDAIIFY-----NFRPDRAIQ------ISN 194
Query: 414 WLKNNPEFLDAFLYWVDEIIERHKDVYFVTMTQ 446
N +F F D + K ++FV +T
Sbjct: 195 TF-TNEDF-REF----DRGPKHPKHLFFVCLTH 221
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 401
Score = 26.6 bits (57), Expect = 8.2
Identities = 17/214 (7%), Positives = 47/214 (21%), Gaps = 22/214 (10%)
Query: 230 QELHRKGHEVAVHSITHNDDENFWSNATVDDWAKEMAGMRIIAEKYANLSDNSVVGVRAP 289
L G + + E + V + ++ E + A
Sbjct: 22 DRLKALGVQTRM--CAPPAAEERLAEVGVPHVPVGLPQHMMLQEGMPPPPPEEEQRLAAM 79
Query: 290 YLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQHCPTRSHAV 349
+ QF + A + + ++ ++ ++ +
Sbjct: 80 TVE----MQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPH 135
Query: 350 WEMVMNELDRREDPNFDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYDQNRAPLGLY 409
+E + + ++ + ++ RA +GL
Sbjct: 136 LPPAYDEPTTPGVTDIR---------------VLWEERAARFADRYGPTLNRRRAEIGLP 180
Query: 410 FHAAWLK-NNPEFLDAFLYWVDEIIERHKDVYFV 442
+ E V ++ D
Sbjct: 181 PVEDVFGYGHGERPLLAADPVLAPLQPDVDAVQT 214
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.442
Gapped
Lambda K H
0.267 0.0383 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,965,801
Number of extensions: 98980
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 51
Length of query: 476
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 387
Effective length of database: 1,185,626
Effective search space: 458837262
Effective search space used: 458837262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.9 bits)