BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16053
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 238 bits (606), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 121/224 (54%), Positives = 153/224 (68%), Gaps = 18/224 (8%)
Query: 49 RKRQHEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELP 108
R ++EELY QSY V V+FAS+P+F EFY E DVNK+GLECLR LNE+I+DFD
Sbjct: 1 RSLKNEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFD------ 54
Query: 109 KFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDV 168
LL PKF V KIKTIGSTYMAA+GL + + + + E ++ H+
Sbjct: 55 ----------DLLSKPKFSGVEKIKTIGSTYMAATGLSA--IPSQEHAQEPERQYMHIGT 102
Query: 169 LIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRME 228
++EFA + L IN+ SFN F L++G+NHGP+ AGVIGA+KP YDIWGNTVNVASRM+
Sbjct: 103 MVEFAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMD 162
Query: 229 STGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYL 272
STG IQVTEET+ ILQ GY RG+++VKGKG L TY++
Sbjct: 163 STGVLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFV 206
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 237 bits (605), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 123/236 (52%), Positives = 159/236 (67%), Gaps = 21/236 (8%)
Query: 52 QHEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFK 111
++EELY QSY V V+FAS+P+F EFY E DVNK+GLECLR LNE+I+DFD
Sbjct: 3 KNEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFD--------- 53
Query: 112 EWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIE 171
LL PKF V KIKTIGSTYMAA+GL + + + + E ++ H+ ++E
Sbjct: 54 -------DLLSKPKFSGVEKIKTIGSTYMAATGLSA--IPSQEHAQEPERQYMHIGTMVE 104
Query: 172 FAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTG 231
FA + L IN+ SFN F L++G+NHGP+ AGVIGA+KP YDIWGNTVNVASRM+STG
Sbjct: 105 FAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTG 164
Query: 232 RAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYL---LGKSTTGANYPS 284
IQVTEET+ ILQ GY RG+++VKGKG L TY++ + +S + +N S
Sbjct: 165 VLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFVNTEMSRSLSQSNLAS 220
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/220 (54%), Positives = 151/220 (68%), Gaps = 18/220 (8%)
Query: 53 HEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKE 112
+EELY QSY V V+FAS+P+F EFY E DVNK+GLECLR LNE+I+DFD
Sbjct: 1 NEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFD---------- 50
Query: 113 WSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEF 172
LL PKF V KIKTIGSTYMAA+GL + + + + E ++ H+ ++EF
Sbjct: 51 ------DLLSKPKFSGVEKIKTIGSTYMAATGLSA--IPSQEHAQEPERQYMHIGTMVEF 102
Query: 173 AMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGR 232
A + L IN+ SFN F L++G+NHGP+ AGVIGA+KP YDIWGNTVNVASRM+STG
Sbjct: 103 AYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGV 162
Query: 233 AGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYL 272
IQVTEET+ ILQ GY RG+++VKGKG L TY++
Sbjct: 163 LDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFV 202
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 37/220 (16%)
Query: 56 LYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSR 115
+ + Y E VLFA + F+E + + +RFL+ + S FD L++
Sbjct: 3 IIADKYDEASVLFADIVGFTERAS----STAPADLVRFLDRLYSAFDELVD--------- 49
Query: 116 PIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAME 175
+ LE KI+ G +YM SG+ +P R H L +FA++
Sbjct: 50 --QHGLE--------KIEVSGDSYMVVSGVP-------RP------RPDHTQALADFALD 86
Query: 176 MKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGF 235
M + + N L++G+ GP+ AGV+G+R+ Y +WG+ VNVASRMEST G
Sbjct: 87 MTNVAAQLKDPRGNPVPLRVGLATGPVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQ 146
Query: 236 IQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLLGK 275
IQV +E L+ ++ +RG ++VKGKG + T+YL+G+
Sbjct: 147 IQVPDEVYERLKD-DFVLRERGHINVKGKGVMRTWYLIGR 185
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 36/216 (16%)
Query: 58 SQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPI 117
+Q + E VLF+ + F+E LE L+E+ FDA +E
Sbjct: 4 AQEHPEATVLFSDIVGFTEIAS----RSSPLEVXSLLDELYQRFDAAIE----------- 48
Query: 118 KSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMK 177
++ ++ K++TIG YM + P D H DVL+EFA+ M
Sbjct: 49 -------EYPQLYKVETIGDAYMVVCNV-------TVPCD------DHADVLLEFALRMH 88
Query: 178 KALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQ 237
+ + + +++G++ GP+ AGV+G + P + ++G+TVN ASRMES G AG I
Sbjct: 89 EEASRVASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIH 148
Query: 238 VTEETTHILQHF-GYIFEQRGLVSVKGKGQLMTYYL 272
++E L+ + +RG ++VKGKG + TY L
Sbjct: 149 ISEACYXCLRSKERFEIRERGNITVKGKGTMRTYLL 184
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 36/216 (16%)
Query: 58 SQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPI 117
+Q + E VLF+ + F+E LE L+E+ FDA +E
Sbjct: 4 AQEHPEATVLFSDIVGFTEIAS----RSSPLEVXSLLDELYQRFDAAIE----------- 48
Query: 118 KSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMK 177
++ ++ K++TIG YM + P D H DVL+EFA+ M
Sbjct: 49 -------EYPQLYKVETIGDAYMVVCNV-------TVPCD------DHADVLLEFALRMH 88
Query: 178 KALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQ 237
+ + + +++G++ GP+ AGV+G + P + ++G+TVN ASRMES G AG I
Sbjct: 89 EEASRVASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIH 148
Query: 238 VTEETTHILQHF-GYIFEQRGLVSVKGKGQLMTYYL 272
++E L+ + +RG ++VKGKG + TY L
Sbjct: 149 ISEACYCCLRSKERFEIRERGNITVKGKGTMRTYLL 184
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 35/228 (15%)
Query: 58 SQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPI 117
++ Y V +LF+ + F+ F + + ++ + LN++ + FD L + K P
Sbjct: 7 AKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRK-----NPF 61
Query: 118 KSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMK 177
V K++T+G YM SGL P I H + A++M
Sbjct: 62 -----------VYKVETVGDKYMTVSGL---------PEPCIH----HARSICHLALDMM 97
Query: 178 KALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQ 237
+ + G + + +G++ G + GVIG R P Y ++GNTVN+ SR E+TG G I
Sbjct: 98 E-IAGQVQVDGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKIN 156
Query: 238 VTEETTHIL-----QHFGYIFEQRGLVSVKGKGQLMTYYLLGKSTTGA 280
V+E T L + E RG VS+KGK + M + L + TG
Sbjct: 157 VSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRKNTGT 204
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 35/228 (15%)
Query: 58 SQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPI 117
++ Y V +LF+ + F+ F + + ++ + LN++ + FD L + K P
Sbjct: 8 AKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRK-----NPF 62
Query: 118 KSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMK 177
V K++T+ YM SGL P I H + A++M
Sbjct: 63 -----------VYKVETVCDKYMTVSGL---------PEPCIH----HARSICHLALDMM 98
Query: 178 KALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQ 237
+ + G + + +G++ G + GVIG R P Y ++GNTVN+ SR E+TG G I
Sbjct: 99 E-IAGQVQVDGESVQITIGIHTGEVVTGVIGQRMPRYSLFGNTVNLTSRTETTGEKGKIN 157
Query: 238 VTEETTHIL-----QHFGYIFEQRGLVSVKGKGQLMTYYLLGKSTTGA 280
V+E T L + E RG VS+KGK + M + L + TG
Sbjct: 158 VSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRKNTGT 205
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 36/188 (19%)
Query: 55 ELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWS 114
++Y Q + V +LFA + F+ + E + LNE+ + FD
Sbjct: 26 KIYIQKHDNVSILFADIEGFTSLASQCTAQ----ELVMTLNELFARFD------------ 69
Query: 115 RPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAM 174
+L ++IK +G Y SGL P E R H +E M
Sbjct: 70 -------KLAAENHCLRIKILGDCYYCVSGL------------P-EARADHAHCCVEMGM 109
Query: 175 EMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAG 234
+M +A++ + E + + +++G++ G + GV+G RK +D+W N V +A+ ME+ G+AG
Sbjct: 110 DMIEAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAG 169
Query: 235 FIQVTEET 242
I +T+ T
Sbjct: 170 RIHITKAT 177
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 36/188 (19%)
Query: 55 ELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWS 114
++Y Q + V +LFA + F+ + E + LNE+ + FD
Sbjct: 26 KIYIQKHDNVSILFADIEGFTSLASQCTAQ----ELVMTLNELFARFD------------ 69
Query: 115 RPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAM 174
+L ++IK +G Y SGL P E R H +E M
Sbjct: 70 -------KLAAENHCLRIKILGDCYYCVSGL------------P-EARADHAHCCVEMGM 109
Query: 175 EMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAG 234
+M +A++ + E + + +++G++ G + GV+G RK +D+W N V +A+ ME+ G+AG
Sbjct: 110 DMIEAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAG 169
Query: 235 FIQVTEET 242
I +T+ T
Sbjct: 170 RIHITKAT 177
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 36/188 (19%)
Query: 55 ELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWS 114
++Y Q + V +LFA + F+ + E + LNE+ + FD
Sbjct: 18 KIYIQKHDNVSILFADIEGFTSLASQCTAQ----ELVMTLNELFARFD------------ 61
Query: 115 RPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAM 174
+L ++IK +G Y SGL P E R H +E M
Sbjct: 62 -------KLAAENHCLRIKILGDCYYCVSGL------------P-EARADHAHCCVEMGM 101
Query: 175 EMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAG 234
+M +A++ + E + + +++G++ G + GV+G RK +D+W N V +A+ ME+ G+AG
Sbjct: 102 DMIEAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAG 161
Query: 235 FIQVTEET 242
I +T+ T
Sbjct: 162 RIHITKAT 169
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 128 EVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQS 187
+V K++TIG Y A GL K SD H + A++M + +
Sbjct: 56 DVYKVETIGDAYCVAGGLH-------KESD------THAVQIALMALKMMELSDEVMSPH 102
Query: 188 FNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQ 247
+++G++ G + AGV+G + P Y ++GN V +A++ ES I V+ T +L+
Sbjct: 103 GEPIKMRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLK 162
Query: 248 HF-GYIFEQR 256
G++F R
Sbjct: 163 DCPGFVFTPR 172
>pdb|3R5G|A Chain A, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
pdb|3R5G|B Chain B, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
Length = 198
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 193 LKMGVNHGPITAGVIGA-RKPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHFGY 251
++MG+N G T G GA + Y I G VN+ASR+ES AG I ++ ET +++
Sbjct: 110 IRMGINTGYCTVGNFGADTRMDYTIIGREVNLASRLESASEAGEILISHETYSLIKDV-I 168
Query: 252 IFEQRGLVSVKG 263
+ +G ++VKG
Sbjct: 169 MCRDKGQIAVKG 180
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|B Chain B, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|C Chain C, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|D Chain D, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|E Chain E, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|F Chain F, Crystal Structure Of The Guanylyl Cyclase Cya2
Length = 208
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 170 IEFAMEMKKALTGINEQ----SFNHFVLKMGVNHGPITAGVIGA-RKPHYDIWGNTVNVA 224
+ +EM+ AL +N+Q + +G+N G + G IG+ ++ Y + G VN+
Sbjct: 85 VACGVEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGSEKRTKYGVVGAQVNLT 144
Query: 225 SRMESTGRAGFIQVTEET 242
R+ES G I ++ T
Sbjct: 145 YRIESYTTGGQIFISSTT 162
>pdb|3MR7|A Chain A, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|B Chain B, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|C Chain C, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
Length = 189
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 161 VRWKHLDVLIEFAMEMKKALTGINEQS--FNHFVLKMGVNHGPITAGVIGARKPHYDIWG 218
R+ + A+E+++A E + ++G+N G I DI+G
Sbjct: 62 ARFDTAQAALRCALEIQQAXQQREEDTPRKERIQYRIGINIGDIVL-------EDGDIFG 114
Query: 219 NTVNVASRMESTGRAGFIQVTEETTHILQ-HFGYIFEQRGLVSVK 262
+ VNVA+R+E+ G I V++ I Q F GL VK
Sbjct: 115 DAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPFTDLGLQKVK 159
>pdb|1VLG|A Chain A, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|B Chain B, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|C Chain C, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|D Chain D, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|E Chain E, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|F Chain F, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|G Chain G, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
pdb|1VLG|H Chain H, Crystal Structure Of Ferritin (Tm1128) From Thermotoga
Maritima At 2.00 A Resolution
Length = 176
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 221 VNVASRMESTGRAGFI-----QVTEETTHILQHFGYIFEQRGLVSVKG 263
+++A+ ++ G GF Q EE TH ++ + YI+E+ G V ++
Sbjct: 39 LSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEA 86
>pdb|1Z4A|A Chain A, Ferritin From T. Maritima
pdb|1Z4A|B Chain B, Ferritin From T. Maritima
pdb|1Z4A|C Chain C, Ferritin From T. Maritima
pdb|1Z4A|D Chain D, Ferritin From T. Maritima
pdb|1Z4A|E Chain E, Ferritin From T. Maritima
pdb|1Z4A|F Chain F, Ferritin From T. Maritima
pdb|1Z4A|G Chain G, Ferritin From T. Maritima
pdb|1Z4A|H Chain H, Ferritin From T. Maritima
Length = 164
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 221 VNVASRMESTGRAGFI-----QVTEETTHILQHFGYIFEQRGLVSVKG 263
+++A+ ++ G GF Q EE TH ++ + YI+E+ G V ++
Sbjct: 27 LSMATYFDAEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEA 74
>pdb|1SZO|A Chain A, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|B Chain B, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|C Chain C, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|D Chain D, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|E Chain E, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|F Chain F, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|G Chain G, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|H Chain H, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|I Chain I, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|J Chain J, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|K Chain K, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|L Chain L, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
Length = 257
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 92 RFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVA 151
R LN ++S +E+P + P+ + E+P +++ + +T+ P+F +
Sbjct: 99 RLLNNLLS-----IEVPVIAAVNGPVTNAPEIPVMSDIV-LAAESATFQDG----PHFPS 148
Query: 152 TIKPSDPIEVRWKHL 166
I P D V W H+
Sbjct: 149 GIVPGDGAHVVWPHV 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,941,925
Number of Sequences: 62578
Number of extensions: 398611
Number of successful extensions: 897
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 19
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)