Query psy16053
Match_columns 351
No_of_seqs 267 out of 1643
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 19:39:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4171|consensus 100.0 2.4E-43 5.2E-48 358.1 25.3 227 12-279 396-624 (671)
2 KOG3619|consensus 100.0 1.1E-39 2.4E-44 342.1 23.6 253 1-273 589-841 (867)
3 PF00211 Guanylate_cyc: Adenyl 100.0 2.2E-36 4.9E-41 268.5 21.8 181 57-273 2-183 (184)
4 smart00044 CYCc Adenylyl- / gu 100.0 3.7E-34 8E-39 257.0 22.2 188 25-251 2-190 (194)
5 KOG1023|consensus 100.0 6.1E-34 1.3E-38 285.9 15.3 226 13-279 251-479 (484)
6 COG2114 CyaA Adenylate cyclase 100.0 1.2E-31 2.7E-36 247.8 22.7 194 26-276 18-216 (227)
7 KOG3619|consensus 100.0 1.3E-31 2.8E-36 281.5 18.1 218 1-255 41-267 (867)
8 cd07302 CHD cyclase homology d 100.0 2.3E-30 5.1E-35 225.5 22.3 174 63-272 1-176 (177)
9 KOG3618|consensus 100.0 6.7E-31 1.5E-35 266.2 11.6 246 2-278 1028-1274(1318)
10 KOG3618|consensus 100.0 1.4E-29 3E-34 256.8 15.9 236 5-277 254-529 (1318)
11 cd07556 Nucleotidyl_cyc_III Cl 99.4 2E-11 4.3E-16 101.0 16.0 131 64-236 2-132 (133)
12 PF05165 GGDN: GGDN family; I 94.9 0.22 4.8E-06 46.6 9.7 61 61-144 125-186 (246)
13 PRK10245 adrA diguanylate cycl 94.1 0.82 1.8E-05 45.3 12.6 59 62-144 235-293 (366)
14 COG2429 Archaeal GTP cyclohydr 93.6 0.55 1.2E-05 43.3 9.3 63 61-146 129-192 (250)
15 COG2199 c-di-GMP synthetase (d 89.7 4.6 0.0001 35.0 10.7 59 62-144 50-108 (181)
16 COG3706 PleD Response regulato 89.5 10 0.00022 38.6 14.1 121 61-233 299-424 (435)
17 PF00990 GGDEF: GGDEF domain; 89.0 3.1 6.7E-05 34.3 8.8 59 62-144 31-89 (161)
18 PRK02240 GTP cyclohydrolase II 88.0 3.8 8.2E-05 38.7 9.2 61 61-144 132-194 (254)
19 PF10851 DUF2652: Protein of u 87.7 8.1 0.00017 32.0 9.8 41 189-232 71-111 (116)
20 PRK09966 putative inner membra 87.0 13 0.00028 36.6 13.2 59 62-144 277-335 (407)
21 PRK09894 diguanylate cyclase; 85.4 9.7 0.00021 35.6 10.8 59 62-144 157-215 (296)
22 TIGR02577 cas_TM1794_Crm2 CRIS 85.1 9.9 0.00022 39.3 11.4 120 62-232 342-481 (482)
23 smart00267 GGDEF diguanylate c 84.2 18 0.00039 29.4 10.8 58 63-144 34-91 (163)
24 PRK02240 GTP cyclohydrolase II 83.5 8.5 0.00018 36.3 9.1 59 66-144 4-62 (254)
25 PRK15426 putative diguanylate 82.9 38 0.00082 35.0 14.9 59 62-144 428-486 (570)
26 PRK11059 regulatory protein Cs 81.9 47 0.001 35.3 15.3 83 62-184 258-340 (640)
27 COG3887 Predicted signaling pr 81.0 15 0.00033 38.7 10.7 124 62-239 175-299 (655)
28 TIGR00254 GGDEF diguanylate cy 80.3 28 0.00061 28.6 10.7 58 62-143 32-89 (165)
29 PRK11829 biofilm formation reg 79.8 58 0.0013 34.4 15.2 100 62-204 261-360 (660)
30 PRK14538 putative bifunctional 79.4 19 0.00041 39.8 11.5 91 69-200 210-300 (838)
31 cd01949 GGDEF Diguanylate-cycl 75.0 38 0.00082 27.2 9.8 58 62-143 30-87 (158)
32 PRK13561 putative diguanylate 69.0 1.3E+02 0.0029 31.7 14.6 58 62-143 257-314 (651)
33 PRK09776 putative diguanylate 56.5 74 0.0016 35.6 10.3 58 62-143 695-752 (1092)
34 PF05165 GGDN: GGDN family; I 53.9 86 0.0019 29.6 8.6 58 69-146 4-62 (246)
35 PRK10060 RNase II stability mo 53.8 76 0.0016 33.9 9.5 59 62-144 265-323 (663)
36 TIGR02578 cas_TM1811_Csm1 CRIS 48.5 2E+02 0.0044 31.0 11.5 122 62-232 521-647 (648)
37 PF11294 DUF3095: Protein of u 32.9 1.7E+02 0.0038 29.3 7.5 41 189-229 105-155 (373)
38 COG2429 Archaeal GTP cyclohydr 32.4 2.5E+02 0.0053 26.3 7.8 58 66-143 4-61 (250)
39 PF14775 NYD-SP28_assoc: Sperm 24.6 1.3E+02 0.0029 21.8 3.9 25 13-37 36-60 (60)
40 PF10655 DUF2482: Hypothetical 23.8 96 0.0021 24.8 3.1 51 175-232 23-75 (100)
41 PRK14834 undecaprenyl pyrophos 22.0 5.5E+02 0.012 24.2 8.5 51 62-138 60-110 (249)
No 1
>KOG4171|consensus
Probab=100.00 E-value=2.4e-43 Score=358.08 Aligned_cols=227 Identities=30% Similarity=0.573 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHhcCCcccccccccceeeeEEEEEEecCCccccccccccccchHHHH
Q psy16053 12 KKEVESQKETASDIRRRNEALVYNILPPHVASHFLGNRKRQHEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECL 91 (351)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~lL~~~lP~~v~~~l~~~~~~~~~~~~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~ 91 (351)
+.++++..++|+.+|++...||++++|+.||+.|..+ +.....++.+|||||+||++||.++..+. |.+++
T Consensus 396 ~~~Le~~~~~Le~EKkkTd~LLy~mlP~~VA~qLr~g-----~~v~a~~f~~vTilFsdIv~Ft~ic~~ct----p~~vV 466 (671)
T KOG4171|consen 396 KEKLEKMTRELEEEKKKTDTLLYSMLPRSVAQQLRQG-----ESVDAKEFDDVTILFSDIVGFTAICSQCT----PMQVV 466 (671)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHcC-----CCcCccccCceEEEEeccchHHhHhhccC----cHHHH
Confidence 7778888899999999999999999999999999554 57778889999999999999999999998 89999
Q ss_pred HHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHH
Q psy16053 92 RFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIE 171 (351)
Q Consensus 92 ~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~ 171 (351)
.+||++|+.||+++..| ++|++.|+||+||++.|+|.... .||..++.
T Consensus 467 ~~LN~lyt~fD~~i~~~-------------------~VYKVETIGDaYm~vsG~P~~~~-------------~HAe~i~~ 514 (671)
T KOG4171|consen 467 NMLNELYTRFDRIIDTH-------------------DVYKVETIGDAYMVVSGLPDASD-------------YHAEHIAD 514 (671)
T ss_pred HHHHHHHHHHHHhhccc-------------------CeEEEeeccchheeecCCCCCCh-------------hHHHHHHH
Confidence 99999999999999998 99999999999999999998866 99999999
Q ss_pred HHHHHHHHHHHHhhcc-CCceEEEEEEeeecEEEEeeCCCCcceeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcCC
Q psy16053 172 FAMEMKKALTGINEQS-FNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHFG 250 (351)
Q Consensus 172 ~Al~m~~~l~~~~~~~-~~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~~ 250 (351)
+||.|+......-.+. ..++.+|||||+|||++|+||.+.|+|.+||++||+|+|||+.+.||.|+||+.||+.+...+
T Consensus 515 ~AL~Mm~~ak~v~~p~~~~pi~iRiGIHsG~VvAGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~~l~~~~ 594 (671)
T KOG4171|consen 515 LALGMMEEAKEVVSPVTGEPIQIRIGIHSGPVVAGVVGVKMPRYCLFGDTVNLASRMESSSVPGKINVSPTTYRKLKKQG 594 (671)
T ss_pred HHHHHHHHhhhhcCcCCCCceEEEEEeccCCeeeeeecccccceeecCCchhhhhhhhcCCCCceEEeCHHHHHHHHhCC
Confidence 9999999998876553 678999999999999999999999999999999999999999999999999999999999874
Q ss_pred -eeEEEcceEEecCcCceEEEEEeeccCCC
Q psy16053 251 -YIFEQRGLVSVKGKGQLMTYYLLGKSTTG 279 (351)
Q Consensus 251 -~~~~~~g~v~lKG~~~~~~~~~~~~~~~~ 279 (351)
|.|.++|.+.+||++...+||+.....+.
T Consensus 595 ~f~f~pRg~v~vk~kg~m~tyFL~~~~~~~ 624 (671)
T KOG4171|consen 595 SFEFEPRGRVEVKGKGPMETYFLERSLGPS 624 (671)
T ss_pred CceeeecCccccCCCCceEEEEEEecCCCC
Confidence 99999999999999998999988766554
No 2
>KOG3619|consensus
Probab=100.00 E-value=1.1e-39 Score=342.11 Aligned_cols=253 Identities=60% Similarity=1.002 Sum_probs=234.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHhcCCcccccccccceeeeEEEEEEecCCccccccc
Q psy16053 1 MEKASKVLFIWKKEVESQKETASDIRRRNEALVYNILPPHVASHFLGNRKRQHEELYSQSYAEVGVLFASMPNFSEFYCE 80 (351)
Q Consensus 1 ~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~lL~~~lP~~v~~~l~~~~~~~~~~~~~~~~~~vtVlF~Di~gft~l~~~ 80 (351)
+|+.+|+-|+|+.|..+++++.+..+..++.||.++||.+|+.+++..+++. +.+|.+.|..|.|||+.|.+|..+..+
T Consensus 589 ~E~~~RlDFLWk~q~~~E~ee~e~m~~~Nr~LLeNiLPaHVA~HFl~~~~r~-~eLY~qSy~~VgVMFASipnF~dFYsE 667 (867)
T KOG3619|consen 589 VEYTARLDFLWKVQAQEEKEEMETMQNLNRLLLENILPSHVAAHFLGSKKRN-EELYHQSYDCVGVMFASIPNFKDFYSE 667 (867)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhcccch-HHHHHhhhceEEEEEEecCCcceeeee
Confidence 4788999999999999999999999999999999999999999999888666 899999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEeeCCCcCccCCCCCCCchh
Q psy16053 81 DDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIE 160 (351)
Q Consensus 81 ~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~fG~p~~~~~~~~p~~~~~ 160 (351)
.+.+.+..+.+++||++++.||+++.+- +|.+..++|++|-+|||+.|+...... . .+.+.
T Consensus 668 ~d~NneGlECLRlLNEIIaDFDeLL~~p----------------kF~~IEKIKTIGSTYMAAsGL~~~~~~--~-~~~~~ 728 (867)
T KOG3619|consen 668 CDVNNEGLECLRLLNEIIADFDELLSKP----------------KFSGVEKIKTIGSTYMAASGLNPTSAQ--E-NDQSL 728 (867)
T ss_pred ecCCcccchHHHHHHHHHhhHHHhcCcc----------------ccccceeEEEecchhhhhhCCChhhhh--c-cCcch
Confidence 8888778899999999999999977755 777999999999999999999765431 1 11122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCCcceeEeCchHHHHHHHHhcCCCCcEEeCH
Q psy16053 161 VRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTE 240 (351)
Q Consensus 161 ~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe 240 (351)
..+.|+...+.+|++|...+..+|..+++.+.+||||+.||+++|+||.++|+||+||.|||+|+||++++.+|.|+|++
T Consensus 729 ~~~~h~~~l~eFAlal~~~L~~IN~~SfNnF~LrIGin~GpvvAGVIGArKPqYDIWGNTVNvASRMdSTGv~g~IQVTE 808 (867)
T KOG3619|consen 729 RQWSHLGALVEFALALMHKLDEINRHSFNNFELRIGINHGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPGRIQVTE 808 (867)
T ss_pred hHHhhHHHHHHHHHHHHHHHHhhhHHhhccceeeeceeccceeeeEecCCCCCccccccchhhhhcccccCCCCeEEecH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCeeEEEcceEEecCcCceEEEEEe
Q psy16053 241 ETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLL 273 (351)
Q Consensus 241 ~~~~~l~~~~~~~~~~g~v~lKG~~~~~~~~~~ 273 (351)
+|+..|...+|.|..+|.+.+|||++..|||+-
T Consensus 809 Et~~iL~~~gy~~~~RG~i~VKGkGel~Tyfl~ 841 (867)
T KOG3619|consen 809 ETANILQGLGYRFECRGVINVKGKGELETYFLC 841 (867)
T ss_pred HHHHHHhcCCeeEEecceEEEecccceeEEEec
Confidence 999999999999999999999999999999988
No 3
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=100.00 E-value=2.2e-36 Score=268.51 Aligned_cols=181 Identities=35% Similarity=0.577 Sum_probs=167.4
Q ss_pred ccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeC
Q psy16053 57 YSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIG 136 (351)
Q Consensus 57 ~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iG 136 (351)
|.++++++||||+||+|||.+++..+ +++++.+||.++..+++++.+| +|.+++++|
T Consensus 2 ~~~~~~~vtvlf~di~~ft~l~~~~~----~~~~~~~l~~~~~~~~~~v~~~-------------------~g~~~~~~G 58 (184)
T PF00211_consen 2 YSEQYRNVTVLFADIVGFTDLTEQLD----PEELVRLLNDFFSSLDRIVKQH-------------------GGEIIKFIG 58 (184)
T ss_dssp EEEEEEEEEEEEEEETTHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHT-------------------TEEEEEEET
T ss_pred CccccCeEEEEEEEecCcHHHHHhCC----chhHHHHHHHHHHHhhhccccc-------------------ccccccccc
Confidence 45678999999999999999999988 8999999999999999999999 999999999
Q ss_pred ceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCCcceeE
Q psy16053 137 STYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDI 216 (351)
Q Consensus 137 D~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v 216 (351)
|++|++||.+.... +++..|+++|++|.+.+..++.....++++|||||+|++++|.+|..++.|++
T Consensus 59 d~~~~~f~~~~~~~-------------~~~~~a~~~al~~~~~~~~~~~~~~~~~~~rIGI~~G~v~~g~~G~~~~~~~v 125 (184)
T PF00211_consen 59 DGVMAVFGLPEPDE-------------DAAERAVQFALALLEALERLNKESGPPLSVRIGIHTGPVVVGVVGSRRPEYDV 125 (184)
T ss_dssp TEEEEEESSSSCHC-------------HHHHHHHHHHHHHHHHHHHHHHHHHSS-EEEEEEEEEEEEEEEEESSSEEEEE
T ss_pred ceeEEEeccccccc-------------cccccccccccchhhcccccccccceeeeeeccccccccccccccCcccceee
Confidence 99999999995543 89999999999999999988877678899999999999999999966889999
Q ss_pred eCchHHHHHHHHhcCCCCcEEeCHHHHHHhh-cCCeeEEEcceEEecCcCceEEEEEe
Q psy16053 217 WGNTVNVASRMESTGRAGFIQVTEETTHILQ-HFGYIFEQRGLVSVKGKGQLMTYYLL 273 (351)
Q Consensus 217 ~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~-~~~~~~~~~g~v~lKG~~~~~~~~~~ 273 (351)
||++||+|+||+++|++++|+||+++++.|. ...|.++++|.+.+||++.+.+|++.
T Consensus 126 ~G~~vn~Aarl~~~a~~~~i~vs~~v~~~l~~~~~~~~~~~g~~~lkG~~~~~~y~~~ 183 (184)
T PF00211_consen 126 FGDAVNIAARLESLAPPGQILVSEEVYDALNESDQFRFEELGRVELKGKGPVQTYQLN 183 (184)
T ss_dssp ESHHHHHHHHHHHTSSTTSEEEEHHHHHHHTTHTTEEEEEEEEEEETTSSEEEEEEEE
T ss_pred eehhhhhhHHHHHhhcccccccCHHHHHHhcccCceEEEEeeeEEEecCCCcEEEEEE
Confidence 9999999999999999999999999999999 23799999999999998888888775
No 4
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=100.00 E-value=3.7e-34 Score=257.00 Aligned_cols=188 Identities=33% Similarity=0.562 Sum_probs=170.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHhcCCcccccccccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHH
Q psy16053 25 IRRRNEALVYNILPPHVASHFLGNRKRQHEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDAL 104 (351)
Q Consensus 25 ~~~~~~~lL~~~lP~~v~~~l~~~~~~~~~~~~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~ 104 (351)
++++++++|.+|+|+++++++..+. ......+++++||||+||+|||.+++..+ ++++..++|.++..+.++
T Consensus 2 ~~~~~~~ll~~~lP~~v~~~l~~g~----~~~~~~~~~~~tvlf~di~g~t~l~~~~~----~~~~~~~l~~~~~~~~~~ 73 (194)
T smart00044 2 EKRKTDRLLDQLLPASVAESLKRGG----SPVPAESYDNVTILFTDIVGFTTLSSEAT----PEQVVTLLNDLYSRFDRI 73 (194)
T ss_pred hHHHHHHHHHHhCCHHHHHHHHhCC----CCccccccCeEEEEEeEhhhhhhhhhhCC----HHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998765 13456777999999999999999998887 899999999999999999
Q ss_pred HcccccccccccccccccCCCccCEEEEEEeCceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy16053 105 LELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGIN 184 (351)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~ 184 (351)
+.+| ||+++++.||++|++||.|.... .+|+.+|+.+|++++..+..++
T Consensus 74 i~~~-------------------gg~v~~~~Gd~~l~~F~~~~~~~------------~~~a~~a~~~al~l~~~~~~~~ 122 (194)
T smart00044 74 IDRH-------------------GGYKVKTIGDAYMVVSGLPTEAL------------VDHAELAADEALDMVESLKTVL 122 (194)
T ss_pred HHhc-------------------CeEEEEEeCCEEEEEECCCCCcc------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999987642 1899999999999999998887
Q ss_pred hc-cCCceEEEEEEeeecEEEEeeCCCCcceeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcCCe
Q psy16053 185 EQ-SFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHFGY 251 (351)
Q Consensus 185 ~~-~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~~~ 251 (351)
.. ...++++|||||+|+|++|.+|...++|+++|++||+|+||++.|++|+|+||+++++.|....+
T Consensus 123 ~~~~~~~l~~riGih~G~v~~~~~g~~~~~~~~~G~~vn~AarL~~~a~~g~i~vs~~~~~~l~~~~~ 190 (194)
T smart00044 123 SQHRGNGLRVRIGIHTGPVVAGVVGITMPRYCLFGDTVNLASRMESVGDPGQILVSEETYSLLRRRGP 190 (194)
T ss_pred hhccCCCeeEEEEEeccceEEEecCCCCceeEEeChHHHHHHHHHhcCCCCeEEECHHHHHHHHhhCC
Confidence 54 35679999999999999999999977899999999999999999999999999999999965433
No 5
>KOG1023|consensus
Probab=100.00 E-value=6.1e-34 Score=285.88 Aligned_cols=226 Identities=30% Similarity=0.582 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHhcCCcccccccccceeeeEEEEEEecCCccccccccccccchHHHHH
Q psy16053 13 KEVESQKETASDIRRRNEALVYNILPPHVASHFLGNRKRQHEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLR 92 (351)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~lL~~~lP~~v~~~l~~~~~~~~~~~~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~ 92 (351)
..+.++..++.+++++.+.||.++||+.|++.+..+. ...+..+.++|++|.||++||.++.... |.+++.
T Consensus 251 ~~v~eRt~~l~~e~~k~d~LL~~mLP~~VA~~lk~G~-----~v~pe~~~~vti~fsDiv~fT~l~~~~~----P~~vv~ 321 (484)
T KOG1023|consen 251 KLVDERTAELEEEKKKTDTLLGQMLPKSVAESLKLGK-----TVDPESFDSVTIYFSDIVGFTVLSSNST----PIQVVT 321 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhHhhcCC-----cCCccccCceeeeeHHHHHHHHHHhcCC----Cceeee
Confidence 3446678889999999999999999999999997665 6678889999999999999999999988 888999
Q ss_pred HHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHH
Q psy16053 93 FLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEF 172 (351)
Q Consensus 93 ~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~ 172 (351)
+||++++.|+.++..| +++++.++||+||++.|+|..... .|+..++..
T Consensus 322 ~lNdlyt~Fd~ii~~~-------------------d~yKVetiGDaYmvvSglp~~n~~------------~H~~eia~m 370 (484)
T KOG1023|consen 322 LLNDLYTTFDRIIDKH-------------------DVYKVETIGDAYMVVSGLPIRNGY------------RHAREIASM 370 (484)
T ss_pred eccchHHhhhhccccc-------------------CCeeEeccCcceeecccCceecHh------------HHHHHHHHH
Confidence 9999999999999999 999999999999999999987553 699999999
Q ss_pred HHHHHHHHHHHhhc--cCCceEEEEEEeeecEEEEeeCCCCcceeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcC-
Q psy16053 173 AMEMKKALTGINEQ--SFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHF- 249 (351)
Q Consensus 173 Al~m~~~l~~~~~~--~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~- 249 (351)
+++++..+..+.-+ ....+++|||+|+||+++|++|.+.|+|.+|||+||+|+|||+.+. +.|++|++++..|...
T Consensus 371 sl~~~~~~~~f~i~H~P~~~l~iRig~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~~~l~~~~ 449 (484)
T KOG1023|consen 371 ALGLRSFLESFSLPHRPWEKLRLRIGFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSEEAKNLLTERP 449 (484)
T ss_pred HHHHHHHHhccCCCCCCchhhheeeccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecHHHHHHHHhcC
Confidence 99999999987654 3457999999999999999999999999999999999999999999 9999999999999754
Q ss_pred CeeEEEcceEEecCcCceEEEEEeeccCCC
Q psy16053 250 GYIFEQRGLVSVKGKGQLMTYYLLGKSTTG 279 (351)
Q Consensus 250 ~~~~~~~g~v~lKG~~~~~~~~~~~~~~~~ 279 (351)
+|..+.+|.+.+||++...+||+.+.....
T Consensus 450 ~~~~e~rG~v~~kgkg~~~t~wl~g~~~~~ 479 (484)
T KOG1023|consen 450 QFETEERGLVELKGKGVMSTYWLLGESSKS 479 (484)
T ss_pred ceeeeccCcEEeecCceeeeEEeccCcccc
Confidence 799999999999999999999999876644
No 6
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-31 Score=247.83 Aligned_cols=194 Identities=20% Similarity=0.310 Sum_probs=160.2
Q ss_pred HHHHHHHHHccCCHHHHHHHhcCCcccccccccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHH
Q psy16053 26 RRRNEALVYNILPPHVASHFLGNRKRQHEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALL 105 (351)
Q Consensus 26 ~~~~~~lL~~~lP~~v~~~l~~~~~~~~~~~~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i 105 (351)
.......+..+++..+...+.... ... +.+||||+||+|||.+++.++ +..+..++|.|+..+..++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~vtilfaDi~g~T~l~~~~~----~~~~~~ll~~~~~~~~~~v 84 (227)
T COG2114 18 GLRSDLVLRLYLARVVGRLLARGG-------AGD--RRVTLLFADIVGSTELSESLG----DEALVELLNLYFDAVAEVV 84 (227)
T ss_pred hhhhhHHHHHHhhhccchhhcccc-------ccC--ceEEEEEEeeccchHHhhhCC----HHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666663321 111 789999999999999999998 8899999999999999999
Q ss_pred cccccccccccccccccCCCccCEEEEEEeCceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHH----HHHHHHH
Q psy16053 106 ELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAM----EMKKALT 181 (351)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al----~m~~~l~ 181 (351)
.+| ||.++|++||++|++||.|.+. . +|+.||. ++.....
T Consensus 85 ~~~-------------------gG~v~k~iGD~~la~F~~p~~~--------------~---~A~~~a~~~~~~~~~~~~ 128 (227)
T COG2114 85 ARH-------------------GGRVVKFIGDGFLAVFGRPSPL--------------E---DAVACALDLQLALRNPLA 128 (227)
T ss_pred HHc-------------------CCEEEEEecceEEEEeCCCCCc--------------H---HHHHHHHHHHHHHHHHHh
Confidence 999 9999999999999999998652 1 4555555 4444444
Q ss_pred HHhhccCCceEEEEEEeeecEEEEeeCCCCcceeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhh-cCCeeEEEcceEE
Q psy16053 182 GINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQ-HFGYIFEQRGLVS 260 (351)
Q Consensus 182 ~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~-~~~~~~~~~g~v~ 260 (351)
..+.. .+++|||||+|+|++|.+|+ ||++|++||+|+|||++|++|+|++|+.+++.+. . .+.+...|.+.
T Consensus 129 ~~~~~---~l~~riGi~~G~vv~~~~g~----~~~~G~~VN~AaRLe~~a~~g~i~iS~~~~~~~~~~-~~~~~~~g~~~ 200 (227)
T COG2114 129 RLRRE---SLRVRIGIHTGEVVVGNTGG----YTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRDL-VDLFSGLGSHR 200 (227)
T ss_pred hccCc---CeeEEEEEEeecEEEEeecC----eeEechHhHHHHHHHHhcCCCeEEEcHHHHHHHhhh-hhhhhcCCcee
Confidence 33322 29999999999999999988 9999999999999999999999999999999999 5 57888999999
Q ss_pred ecCcCceEEEEEeecc
Q psy16053 261 VKGKGQLMTYYLLGKS 276 (351)
Q Consensus 261 lKG~~~~~~~~~~~~~ 276 (351)
+||+..|+.+|.+...
T Consensus 201 lkg~~~~~~v~~~~~~ 216 (227)
T COG2114 201 LKGLARPVRVYQLCHR 216 (227)
T ss_pred cCCCCCceEEEEeccc
Confidence 9999999998887644
No 7
>KOG3619|consensus
Probab=99.97 E-value=1.3e-31 Score=281.51 Aligned_cols=218 Identities=28% Similarity=0.494 Sum_probs=204.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHhcCCc---------ccccccccceeeeEEEEEEec
Q psy16053 1 MEKASKVLFIWKKEVESQKETASDIRRRNEALVYNILPPHVASHFLGNRK---------RQHEELYSQSYAEVGVLFASM 71 (351)
Q Consensus 1 ~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~lL~~~lP~~v~~~l~~~~~---------~~~~~~~~~~~~~vtVlF~Di 71 (351)
+|..+|-.|...+++.+.+..++.++++.+++|.+.+|++|+..+..+.. .+...+|.+.+.+|+|+|+||
T Consensus 41 ~e~~~r~~f~~~~~~i~~r~~l~~~~~~qerlllsvlp~~va~~m~~~i~~~~~~~~~~~~f~~iy~~~h~nVSIl~adi 120 (867)
T KOG3619|consen 41 MERAQRQAFLETRKCIEVRMELETEKQQQERLLLSVLPAHVAMEMKKDIIESSARCKNDNQFHKLYIQRHDNVSILFADI 120 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcchhhhccchhheeeccchHhhHHHH
Confidence 47789999999999999999999999999999999999999988865432 245567888999999999999
Q ss_pred CCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEeeCCCcCccC
Q psy16053 72 PNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVA 151 (351)
Q Consensus 72 ~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~fG~p~~~~~ 151 (351)
+|||.++..++ +.+++..||++|.+||+++.++ ++..+|+.||+|.|+.|+|....
T Consensus 121 vgft~l~s~~s----aqelv~~LneLf~rfd~lA~~~-------------------~clRiKiLGdcyyCvsglp~~~~- 176 (867)
T KOG3619|consen 121 VGFTQLASQCS----AQELVKVLNELFARFDRLAAEN-------------------HCLRIKILGDCYYCVSGLPEARP- 176 (867)
T ss_pred hhhhhhhcCCC----HHHHHHHHHHHHHHHHHHHHhc-------------------ceEeeeeecceeEEecCCCCCCh-
Confidence 99999999998 8899999999999999999999 99999999999999999997654
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCCcceeEeCchHHHHHHHHhcC
Q psy16053 152 TIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTG 231 (351)
Q Consensus 152 ~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~VN~AaRLe~~a 231 (351)
+||..++.+.++|..++...+...+.++.+|||||+|+|.||++|.++++||+||..|.+|.+||+.+
T Consensus 177 ------------dHA~~~v~mgl~Mi~aI~~vr~at~~dvnmrvGihsG~Vl~GvlG~~kwq~DVws~dv~lAn~mEs~G 244 (867)
T KOG3619|consen 177 ------------DHAVCCVEMGLDMIKAIKQVREATGVDVNMRVGIHSGSVLCGVLGLRKWQYDVWSNDVTLANHMEAGG 244 (867)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCceeecccccceeeeeeccchhhhhhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeCHHHHHHhhcCCeeEEE
Q psy16053 232 RAGFIQVTEETTHILQHFGYIFEQ 255 (351)
Q Consensus 232 ~~g~I~vSe~~~~~l~~~~~~~~~ 255 (351)
.||.|+||.+|.+.|.. .|.+++
T Consensus 245 ~pgrVhis~~Tl~~L~g-~yeve~ 267 (867)
T KOG3619|consen 245 VPGRVHISKATLDCLNG-EYEVEP 267 (867)
T ss_pred CCceeEechhHHHHhCC-Cceeec
Confidence 99999999999999999 587776
No 8
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.97 E-value=2.3e-30 Score=225.48 Aligned_cols=174 Identities=36% Similarity=0.554 Sum_probs=162.5
Q ss_pred eEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEe
Q psy16053 63 EVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAA 142 (351)
Q Consensus 63 ~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~ 142 (351)
++||+|+||++||.+++..+ +++++.++|.++..+..++..| +|++.++.||+++++
T Consensus 1 ~~~il~~di~~~t~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~-------------------~g~~~~~~gd~~~~~ 57 (177)
T cd07302 1 EVTVLFADIVGFTALSERLG----PEELVELLNEYFSAFDEIIERH-------------------GGTVDKTIGDAVMAV 57 (177)
T ss_pred CEEEEEEEccChHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHc-------------------CCEEEEEeCceEEEE
Confidence 48999999999999998876 8899999999999999999999 999999999999999
Q ss_pred eCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEEEeeecEEEEeeCCCCcceeEeCch
Q psy16053 143 SGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQ--SFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNT 220 (351)
Q Consensus 143 fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~--~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~ 220 (351)
|+.+.... +++.+|+.||++|++.+..++.. ....+.+|||||+|++++|.+|..++.|+++|++
T Consensus 58 f~~~~~~~-------------~~~~~A~~~a~~i~~~~~~~~~~~~~~~~~~~riGi~~G~~~~g~~g~~~~~~~~~G~~ 124 (177)
T cd07302 58 FGLPGAHE-------------DHAERAVRAALEMQEALAELNAEREGGPPLRLRIGIHTGPVVAGVVGSERPEYTVIGDT 124 (177)
T ss_pred eCCCCCch-------------hHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEecceEEEEecCCCCcceeEecch
Confidence 99987754 89999999999999999998875 5678999999999999999999998899999999
Q ss_pred HHHHHHHHhcCCCCcEEeCHHHHHHhhcCCeeEEEcceEEecCcCceEEEEE
Q psy16053 221 VNVASRMESTGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYL 272 (351)
Q Consensus 221 VN~AaRLe~~a~~g~I~vSe~~~~~l~~~~~~~~~~g~v~lKG~~~~~~~~~ 272 (351)
||+|+||++.|++|+|++|+++++.+....|.+.+++.+.+||...++..|.
T Consensus 125 v~~A~rl~~~a~~~~i~vs~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~y~ 176 (177)
T cd07302 125 VNLAARLESLAKPGQILVSEATYELLGDAGFEFEELGEVELKGKSGPVRVYR 176 (177)
T ss_pred HhHHHHHHhcCCCCEEEECHHHHHhhccCceEEEEeCCEEecCCCCceEEEE
Confidence 9999999999999999999999999987459999999999999988888774
No 9
>KOG3618|consensus
Probab=99.97 E-value=6.7e-31 Score=266.25 Aligned_cols=246 Identities=44% Similarity=0.677 Sum_probs=213.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHhcCCcccccccccceeeeEEEEEEecCCcccccccc
Q psy16053 2 EKASKVLFIWKKEVESQKETASDIRRRNEALVYNILPPHVASHFLGNRKRQHEELYSQSYAEVGVLFASMPNFSEFYCED 81 (351)
Q Consensus 2 ~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~lL~~~lP~~v~~~l~~~~~~~~~~~~~~~~~~vtVlF~Di~gft~l~~~~ 81 (351)
|..-|+.|.=+.+....+.++...|.+.+-||.+++|.++++.|+... -|++.+.++.|+|+.|++|.++.+..
T Consensus 1028 E~~yRl~f~Gdv~A~~d~~riQ~mrdQADwLL~NiIP~HvaE~LK~~~------kYSeNH~~~gviFASIvNfnemYeEn 1101 (1318)
T KOG3618|consen 1028 EVSYRLHFHGDVEADLDRTRIQSMRDQADWLLRNIIPYHVAEQLKVSQ------KYSENHDSGGVIFASIVNFNEMYEEN 1101 (1318)
T ss_pred eeeEEEEEecchhhchhHHHHHHHHHHHHHHHhccchHHHHHHhhccc------cccccCccceEEEEEeccHHHHHHHh
Confidence 445566666677777888899999999999999999999999997654 57888999999999999999998765
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEeeCCCcCccCCCCCCCchhh
Q psy16053 82 DVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEV 161 (351)
Q Consensus 82 ~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~fG~p~~~~~~~~p~~~~~~ 161 (351)
-. ...+.++.||+++..||+++.+. .|...+++|++|-+|||+.|+.+..... ..+
T Consensus 1102 ye--GGkEflRVLNElIGDFDELLsrP----------------df~~iEKIKTIG~tyMAASGLnp~~~~~------~~h 1157 (1318)
T KOG3618|consen 1102 YE--GGKEFLRVLNELIGDFDELLSRP----------------DFSSIEKIKTIGATYMAASGLNPAQAQD------GSH 1157 (1318)
T ss_pred hh--chHHHHHHHHHHhccHHHHhccc----------------cchhhHHHhhhhHHHHHhcCCChHHccC------CCC
Confidence 32 36789999999999999988876 6778999999999999999997754421 112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcc-CCceEEEEEEeeecEEEEeeCCCCcceeEeCchHHHHHHHHhcCCCCcEEeCH
Q psy16053 162 RWKHLDVLIEFAMEMKKALTGINEQS-FNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTE 240 (351)
Q Consensus 162 ~~~~a~~Av~~Al~m~~~l~~~~~~~-~~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe 240 (351)
...|......+|++|++.+..+|..- ..++.+|||.+.|||.+|+||..+.-||+|||+||+|+||-+++.+++|.||+
T Consensus 1158 p~EHl~~l~eFa~amq~Vvd~FN~dlL~Fnf~lrvG~NiGpvTAGVIGTtKLyYDIWGDtVNiASRMdsTGv~nRIQVs~ 1237 (1318)
T KOG3618|consen 1158 PQEHLQILFEFAKAMQRVVDDFNNDLLWFNFKLRVGFNIGPVTAGVIGTTKLYYDIWGDTVNIASRMDSTGVENRIQVSE 1237 (1318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhheeeeEEeeccccCccccccccceeeehhhcchhhhhhhccccCCcceeEecH
Confidence 33899999999999999999999764 35799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCeeEEEcceEEecCcCceEEEEEeeccCC
Q psy16053 241 ETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLLGKSTT 278 (351)
Q Consensus 241 ~~~~~l~~~~~~~~~~g~v~lKG~~~~~~~~~~~~~~~ 278 (351)
+++..|.+ .|+|+++|.+.+||+++..+|...++...
T Consensus 1238 ~~~~~L~~-rYeFe~Rg~v~VKGkd~M~tyLy~~r~d~ 1274 (1318)
T KOG3618|consen 1238 ESYRVLSK-RYEFEYRGTVNVKGKDQMKTYLYPKRTDH 1274 (1318)
T ss_pred HHHHHHHh-hccccccceEEEeccCcceeEEeccccCC
Confidence 99999999 69999999999999997777665554443
No 10
>KOG3618|consensus
Probab=99.96 E-value=1.4e-29 Score=256.81 Aligned_cols=236 Identities=26% Similarity=0.465 Sum_probs=196.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHhcCCccc----------------------------cccc
Q psy16053 5 SKVLFIWKKEVESQKETASDIRRRNEALVYNILPPHVASHFLGNRKRQ----------------------------HEEL 56 (351)
Q Consensus 5 ~r~~~~~~~~~~~~~~~l~~~~~~~~~lL~~~lP~~v~~~l~~~~~~~----------------------------~~~~ 56 (351)
+|-.|++--|..-..+.|+.+++--++++.+.+|+-|++.|+++..+. ..+.
T Consensus 254 ~R~TFlKVGQs~l~rkdLE~EkqlKe~MIhSVMP~kvAD~Llk~g~~pS~nd~~~~~~~s~~~r~~~s~~vk~~~~FRPF 333 (1318)
T KOG3618|consen 254 SRSTFLKVGQSILHRKDLEVEKQLKERMIHSVMPRKVADDLLKQGDEPSENDVKRHATSSPKNRKKKSSIVKAPIAFRPF 333 (1318)
T ss_pred hhhhHHHhhHHHHhhhhhHHHHHHHHHHHHhhcChHHHHHHHhhcCCCCcccccCCCCCCcccccchhhccccccccCch
Confidence 344555555555567788999999999999999999999999765210 1111
Q ss_pred ccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeC
Q psy16053 57 YSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIG 136 (351)
Q Consensus 57 ~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iG 136 (351)
......+|+|||+||+|||+++..-+ +++++.+||++|.+||.+|+.. |++++.+.|
T Consensus 334 ~M~~menVSILFADIvGFTkMSsnKs----A~~LV~lLNDLFgRFD~LC~l~-------------------gcEKISTLG 390 (1318)
T KOG3618|consen 334 KMQQMENVSILFADIVGFTKMSSNKS----AHALVGLLNDLFGRFDRLCELT-------------------GCEKISTLG 390 (1318)
T ss_pred hhhhhhhhhhhhhhhhchhhcccccc----HHHHHHHHHHHHHHHHHHHHhc-------------------Ccchhcccc
Confidence 23455789999999999999988766 8899999999999999999998 999999999
Q ss_pred ceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCCcceeE
Q psy16053 137 STYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDI 216 (351)
Q Consensus 137 D~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v 216 (351)
|+|.|+.|+|.+.. |||.+.+.++|.|..++..+..+....+.+|+|||||.|+||++|.+|..||+
T Consensus 391 DCYYCVaGCPEPra-------------DHA~ccvEMGLgMI~AirqFd~~r~e~VnMRVGvHTGtVlCGivGtrRfKFDV 457 (1318)
T KOG3618|consen 391 DCYYCVAGCPEPRA-------------DHAYCCVEMGLGMIKAIRQFDQERKEMVNMRVGVHTGTVLCGIVGTRRFKFDV 457 (1318)
T ss_pred ceeeeecCCCCCcc-------------cceeeehhhcchHHHHHHHHHHHhhcccceEEEEecceEEeeeeecceEeeee
Confidence 99999999998865 99999999999999999999888778899999999999999999999999999
Q ss_pred eCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcCCeeEEE------cceEEecCcCc------eEEEEEeeccC
Q psy16053 217 WGNTVNVASRMESTGRAGFIQVTEETTHILQHFGYIFEQ------RGLVSVKGKGQ------LMTYYLLGKST 277 (351)
Q Consensus 217 ~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~~~~~~~------~g~v~lKG~~~------~~~~~~~~~~~ 277 (351)
|.+.||+|..||+.+.+|+|+||++|...|.+ .|..++ .+...+.|... ..+|++.+..+
T Consensus 458 wSNDV~LAN~MEssGvag~VHiSeaTak~L~d-~Ye~EeG~~~~g~~~~~V~g~~rRtnP~t~kt~li~G~~g 529 (1318)
T KOG3618|consen 458 WSNDVNLANLMESSGVAGKVHISEATAKYLDD-RYEMEEGKVIEGLGQSVVAGQLRRTNPGTLKTYLISGQRG 529 (1318)
T ss_pred ccCcchHHHHHHhcCCCcceEeeHHHHHHhcc-cceeccCccccccceeEEeceeeecCCcccceEEecCccc
Confidence 99999999999999999999999999999998 455443 33444444322 34555555543
No 11
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=99.39 E-value=2e-11 Score=100.96 Aligned_cols=131 Identities=39% Similarity=0.690 Sum_probs=113.3
Q ss_pred EEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEee
Q psy16053 64 VGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAAS 143 (351)
Q Consensus 64 vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~f 143 (351)
++++++||.+|+.+.+..+ ....-++|..+...+.+++..+ ++.+.++.||.|+++|
T Consensus 2 ~~ll~i~i~~~~~i~~~~g----~~~~~~~l~~~~~~l~~~~~~~-------------------~~~~~r~~~d~f~~l~ 58 (133)
T cd07556 2 VTILFADIVGFTSLADALG----PDEGDELLNELAGRFDSLIRRS-------------------GDLKIKTIGDEFMVVS 58 (133)
T ss_pred EEEEEEEchhhHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHc-------------------CcEEEEeecceEEEEE
Confidence 6899999999999999987 7788899999999999999887 7899999999999999
Q ss_pred CCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCCcceeEeCchHHH
Q psy16053 144 GLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNV 223 (351)
Q Consensus 144 G~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~VN~ 223 (351)
.. .....+..++.++...+..........+.++||+|.|++..+..|. ++.++.+|+.+|.
T Consensus 59 ~~------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ig~~~g~~~~~~~~~-~~~~~~~~~~~~~ 119 (133)
T cd07556 59 GL------------------DHPAAAVAFAEDMREAVSALNQSEGNPVRVRIGIHTGPVVVGVIGS-RPQYDVWGALVNL 119 (133)
T ss_pred Cc------------------hHHHHHHHHHHHHHHHHHHHHhccCCceEEEEEEecccEEEEeccC-CccceEEcHHHHH
Confidence 42 2345677888888888776554455678999999999999998888 7788999999999
Q ss_pred HHHHHhcCCCCcE
Q psy16053 224 ASRMESTGRAGFI 236 (351)
Q Consensus 224 AaRLe~~a~~g~I 236 (351)
|++++..+++++|
T Consensus 120 a~~a~~~a~~~~i 132 (133)
T cd07556 120 ASRMESQAKAGQV 132 (133)
T ss_pred HHHHHhcCCCCCc
Confidence 9999999998876
No 12
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=94.88 E-value=0.22 Score=46.63 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=47.6
Q ss_pred eeeEEEEEEecCCcc-ccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceE
Q psy16053 61 YAEVGVLFASMPNFS-EFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTY 139 (351)
Q Consensus 61 ~~~vtVlF~Di~gft-~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ 139 (351)
-..|+|...||.++| .++...+ +-+....+++++..+.+.+.+| |+.-.=.-||-+
T Consensus 125 d~~v~iAH~DI~d~T~~~Td~~~----~ydt~~~I~~l~~~l~~~~~~~-------------------G~L~fylGGDNi 181 (246)
T PF05165_consen 125 DGYVQIAHFDINDSTGTYTDEES----PYDTYLEIEDLYAKLMKYLEKY-------------------GSLAFYLGGDNI 181 (246)
T ss_dssp S--EEEEEEEETTHHHHTTTTS-----HHHHHHHHHHHHHHHHHHHHTT-------------------T---EEEETTEE
T ss_pred CCceEEEEEeeeccchhhhcccC----hHHHHHHHHHHHHHHHHHHHhc-------------------CCEEEEecCceE
Confidence 357999999999999 8888887 8888888899999888888888 888777779999
Q ss_pred EEeeC
Q psy16053 140 MAASG 144 (351)
Q Consensus 140 ma~fG 144 (351)
|++++
T Consensus 182 ~~v~p 186 (246)
T PF05165_consen 182 MAVCP 186 (246)
T ss_dssp EEE-T
T ss_pred EEECC
Confidence 99883
No 13
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=94.15 E-value=0.82 Score=45.31 Aligned_cols=59 Identities=7% Similarity=-0.016 Sum_probs=42.8
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...+++++||.+|..+.+..+ ...--.+|..+...+...+.. +..+-++-||.|.+
T Consensus 235 ~~~~ll~idId~Fk~INd~~G----h~~GD~lL~~vA~~L~~~l~~--------------------~d~laRlggdeFav 290 (366)
T PRK10245 235 RDATLLIIDIDHFKSINDTWG----HDVGDEAIVALTRQLQITLRG--------------------SDVIGRFGGDEFAV 290 (366)
T ss_pred CCEEEEEEECCcchHHHHhhC----chHHHHHHHHHHHHHHHhCCC--------------------CCEEEEEcCcEEEE
Confidence 568999999999999988776 333445555555555555543 45677899999998
Q ss_pred eeC
Q psy16053 142 ASG 144 (351)
Q Consensus 142 ~fG 144 (351)
+..
T Consensus 291 ll~ 293 (366)
T PRK10245 291 IMS 293 (366)
T ss_pred EeC
Confidence 883
No 14
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=93.59 E-value=0.55 Score=43.32 Aligned_cols=63 Identities=11% Similarity=-0.011 Sum_probs=53.8
Q ss_pred eeeEEEEEEecCCcc-ccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceE
Q psy16053 61 YAEVGVLFASMPNFS-EFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTY 139 (351)
Q Consensus 61 ~~~vtVlF~Di~gft-~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ 139 (351)
..-+.|...||.+.| +++...+ |.+....++..+..+.+.+.++ |+...-.-||-+
T Consensus 129 dg~v~IAH~Dvn~~Tgt~Td~~~----~~~t~~~I~~~~~~L~~~l~k~-------------------gal~fflGGDN~ 185 (250)
T COG2429 129 DGYVQIAHFDVNDATGTYTDIVS----PYDTYTEIQRVYATLMRFLEKI-------------------GALLFFLGGDNI 185 (250)
T ss_pred CCceEEEEEeeecchhhhhcccc----hhHHHHHHHHHHHHHHHHHHhc-------------------CcEEEEecCcce
Confidence 356899999999999 8888877 8889999999999999999988 777666678999
Q ss_pred EEeeCCC
Q psy16053 140 MAASGLD 146 (351)
Q Consensus 140 ma~fG~p 146 (351)
|+++..-
T Consensus 186 ma~~p~~ 192 (250)
T COG2429 186 MAVCPGL 192 (250)
T ss_pred EEECCCC
Confidence 9999543
No 15
>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]
Probab=89.72 E-value=4.6 Score=35.01 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=42.1
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...++++.||-+|..+-...+ -..--.+|..+...+...+.. +..+.++-||-+.+
T Consensus 50 ~~~~l~~iDiD~Fk~iND~~G----h~~GD~vL~~va~~L~~~~~~--------------------~~~~~R~gGdEF~i 105 (181)
T COG2199 50 EPLALLLLDLDHFKQINDTYG----HAAGDEVLREVARRLRSNLRE--------------------GDLVARLGGDEFAV 105 (181)
T ss_pred CCeEEEEEeCcCCcccccccc----chHHHHHHHHHHHHHHHhcCC--------------------CCEEEEeccceeEE
Confidence 569999999999999765554 223344555555556665554 34788999999999
Q ss_pred eeC
Q psy16053 142 ASG 144 (351)
Q Consensus 142 ~fG 144 (351)
++.
T Consensus 106 ~l~ 108 (181)
T COG2199 106 LLP 108 (181)
T ss_pred EeC
Confidence 984
No 16
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=89.47 E-value=10 Score=38.65 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=73.5
Q ss_pred eeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEE
Q psy16053 61 YAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYM 140 (351)
Q Consensus 61 ~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~m 140 (351)
.+..+++++||-.|..+-....-. ...++ |..+...+...+ +. -..+-++-|..|+
T Consensus 299 ~~pls~~m~DID~FK~iNDt~GH~-~GDev---Lr~vA~~L~~~v-r~-------------------~Dl~aRyGGEEF~ 354 (435)
T COG3706 299 GRPLSLLMLDIDDFKEINDTYGHD-VGDEV---LRQVARRLRQTV-RG-------------------LDLVARYGGEEFA 354 (435)
T ss_pred CCCeeEEEEecccccccccccCCc-cHHHH---HHHHHHHHHhhc-cc-------------------cccceecCCeeEE
Confidence 367999999999999886665421 12223 333333333333 22 3445566777888
Q ss_pred EeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcc---C--CceEEEEEEeeecEEEEeeCCCCccee
Q psy16053 141 AASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQS---F--NHFVLKMGVNHGPITAGVIGARKPHYD 215 (351)
Q Consensus 141 a~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~---~--~~l~lrIGIhtG~v~~G~iG~~~~~~~ 215 (351)
+++.. .+...|+..|-+|+..+..+.... . ..+.+.|||.++. +..+
T Consensus 355 vvlp~------------------t~~~~Ai~iaerIr~~i~~~~~~~~~~~~~~~~TiSiGVa~~~----------p~~~ 406 (435)
T COG3706 355 VVLPD------------------TDLEAAIAIAERIRQKINELPFVHELSREPLEVTISIGVAEGK----------PGED 406 (435)
T ss_pred EEecC------------------CCHHHHHHHHHHHHHHHhcCCccccccccceEEEEEEEEEecC----------CCCC
Confidence 88722 346668888888888887655321 1 2366677777653 2344
Q ss_pred EeCchHHHHHHHHhcCCC
Q psy16053 216 IWGNTVNVASRMESTGRA 233 (351)
Q Consensus 216 v~Gd~VN~AaRLe~~a~~ 233 (351)
.+..-++.|...--.|+.
T Consensus 407 ~~~~li~~AD~aLy~AK~ 424 (435)
T COG3706 407 SIEELLKRADKALYKAKA 424 (435)
T ss_pred cHHHHHHHHHHHHhHHHh
Confidence 456667777776666654
No 17
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=89.05 E-value=3.1 Score=34.32 Aligned_cols=59 Identities=8% Similarity=0.028 Sum_probs=43.9
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...++++.+|.+|..+....+ ....-.+|..+...+...+.. +..+.++-+|.|++
T Consensus 31 ~~~~l~~i~i~~~~~l~~~~G----~~~~~~~l~~i~~~L~~~~~~--------------------~~~~~r~~~~~f~i 86 (161)
T PF00990_consen 31 EPFALVLIDIDNLDELNEKYG----YEVGDEILRQIAKRLKKQLRE--------------------SDILARLGDDEFAI 86 (161)
T ss_dssp SEEEEEEEEETTHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCT--------------------TSEEEEEETTEEEE
T ss_pred CCceEEEEecccccccccccc----ccccccccccccccccccccc--------------------ccccccccchheee
Confidence 569999999999999887765 444555666666666655543 46778889999998
Q ss_pred eeC
Q psy16053 142 ASG 144 (351)
Q Consensus 142 ~fG 144 (351)
++.
T Consensus 87 l~~ 89 (161)
T PF00990_consen 87 LLP 89 (161)
T ss_dssp EEE
T ss_pred ccc
Confidence 873
No 18
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=88.05 E-value=3.8 Score=38.67 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=45.2
Q ss_pred eeeEEEEEEecCCcccccccc-ccccchHHHHHHHHHHHHHHHHHHcc-cccccccccccccccCCCccCEEEEEEeCce
Q psy16053 61 YAEVGVLFASMPNFSEFYCED-DVNKQGLECLRFLNEVISDFDALLEL-PKFKEWSRPIKSLLELPKFKEVIKIKTIGST 138 (351)
Q Consensus 61 ~~~vtVlF~Di~gft~l~~~~-~~~~~~~~~~~~Ln~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~ 138 (351)
-..|+|...||.++|...... + |-+....+++.+..+.+.+.+ | |+.-.=.-||-
T Consensus 132 ~~~v~iaH~Di~~~T~~~td~~~----~~dt~~~i~~~~~~l~~~~~~~~-------------------g~l~ff~GGDN 188 (254)
T PRK02240 132 DGYVQIAHFDINDITGTYTDIEN----AFDTFLEIEQAYLALMRELRKAH-------------------DALSFFVGGDN 188 (254)
T ss_pred CCceEEEEEeeecccceeeccCc----hhHHHHHHHHHHHHHHHHHHHhc-------------------CcEEEEecCce
Confidence 467999999999999875533 4 666666667777766666666 7 77666667999
Q ss_pred EEEeeC
Q psy16053 139 YMAASG 144 (351)
Q Consensus 139 ~ma~fG 144 (351)
+|++++
T Consensus 189 ~~~~~~ 194 (254)
T PRK02240 189 FMAPCP 194 (254)
T ss_pred EEEECC
Confidence 999983
No 19
>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function.
Probab=87.72 E-value=8.1 Score=31.98 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=33.1
Q ss_pred CceEEEEEEeeecEEEEeeCCCCcceeEeCchHHHHHHHHhcCC
Q psy16053 189 NHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGR 232 (351)
Q Consensus 189 ~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~VN~AaRLe~~a~ 232 (351)
..|.+++-+|+|.+..-.||.-. -++|-.|=+|.||-....
T Consensus 71 ~~LsLKfV~H~Ge~~~~~Vk~~~---kL~G~dVI~aHrlLKN~v 111 (116)
T PF10851_consen 71 INLSLKFVAHYGEVAQQKVKRFC---KLAGKDVIEAHRLLKNDV 111 (116)
T ss_pred hcceEEEEEEeeeeeeeeecccc---hhcCchhhHhHHHHcCCC
Confidence 46999999999999777776542 588999999999966543
No 20
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=86.99 E-value=13 Score=36.64 Aligned_cols=59 Identities=15% Similarity=0.051 Sum_probs=41.4
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...++++.|+.+|..+-+..+ ....-.+|..+...+...+.. +..+.++-||.|.+
T Consensus 277 ~~~~l~~i~id~f~~in~~~G----~~~gd~~l~~~a~~L~~~~~~--------------------~~~~~R~~~deF~i 332 (407)
T PRK09966 277 KTSALLFLDGDNFKYINDTWG----HATGDRVLIEIAKRLAEFGGL--------------------RHKAYRLGGDEFAM 332 (407)
T ss_pred CceEEEEEECccchHHHhhhc----hHHHHHHHHHHHHHHHHhCCC--------------------CCEEEEEccceEEE
Confidence 457899999999999987776 333444555555555554443 35567888999988
Q ss_pred eeC
Q psy16053 142 ASG 144 (351)
Q Consensus 142 ~fG 144 (351)
++.
T Consensus 333 ll~ 335 (407)
T PRK09966 333 VLY 335 (407)
T ss_pred EEc
Confidence 883
No 21
>PRK09894 diguanylate cyclase; Provisional
Probab=85.42 E-value=9.7 Score=35.64 Aligned_cols=59 Identities=7% Similarity=-0.042 Sum_probs=43.2
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...+++++||.+|..+-...+ ....-.+|..+...+...+.. +..+-++-||-|++
T Consensus 157 ~~~~l~~i~id~f~~in~~~G----~~~gd~~L~~ia~~l~~~~~~--------------------~~~~~R~~g~~F~i 212 (296)
T PRK09894 157 QNLYLALLDIDRFKLVNDTYG----HLIGDVVLRTLATYLASWTRD--------------------YETVYRYGGEEFII 212 (296)
T ss_pred CcEEEEEEECccccHHHHccC----cHHHHHHHHHHHHHHHHhCCC--------------------CCEEEEEcCCeEEE
Confidence 458999999999999988876 344455666666666665543 45677888999988
Q ss_pred eeC
Q psy16053 142 ASG 144 (351)
Q Consensus 142 ~fG 144 (351)
++.
T Consensus 213 ll~ 215 (296)
T PRK09894 213 CLK 215 (296)
T ss_pred EeC
Confidence 873
No 22
>TIGR02577 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 family. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.
Probab=85.09 E-value=9.9 Score=39.28 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=79.2
Q ss_pred eeEEEEEEecCCcccccccccc--------------ccch---HHHHHHHHHHHHHHHHHHcccccccccccccccccCC
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDV--------------NKQG---LECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELP 124 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~--------------~~~~---~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 124 (351)
.-.+|+.+|--+--.+...... ...+ ..+-+.|+.++......+.++
T Consensus 342 ~y~Ail~aDGD~mG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~aL~~f~~~~~~~v~~~---------------- 405 (482)
T TIGR02577 342 PYYAILKADGDRMGKLLRGEIRPEEKERIHPKKVKNLTTPAAHVAFSRALAEFSLKAVKIVVNE---------------- 405 (482)
T ss_pred ceEEEEEccccchHHHHhCCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhh----------------
Confidence 4599999998887777665210 0012 345666777777766667766
Q ss_pred CccCEEEEEEeCceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhc---cCCceEEEEEEeeec
Q psy16053 125 KFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQ---SFNHFVLKMGVNHGP 201 (351)
Q Consensus 125 ~~~gg~~vk~iGD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~---~~~~l~lrIGIhtG~ 201 (351)
+|.++=.-||-++++.. +..|+.+|.++++........ .... +++..|-
T Consensus 406 ---~g~~VYaGGDDvlai~p---------------------~~~al~~a~~l~~~F~~~~~~~~~~~~~----~T~SaGI 457 (482)
T TIGR02577 406 ---HGELVYAGGDDVLALLP---------------------VDTALDVAKELRKEFRESLEKSLGGERG----PTMSAGL 457 (482)
T ss_pred ---CeEEEEEccCcEEEEcc---------------------HHHHHHHHHHHHHHHHHHhhcccccCCC----ceEEEEE
Confidence 79999999999999983 334888899998887776432 1223 3444443
Q ss_pred EEEEeeCCCCcceeEeCchHHHHHHHHhcCC
Q psy16053 202 ITAGVIGARKPHYDIWGNTVNVASRMESTGR 232 (351)
Q Consensus 202 v~~G~iG~~~~~~~v~Gd~VN~AaRLe~~a~ 232 (351)
+++- .-.-+....+.|..++..|+
T Consensus 458 ~iah-------~k~Pl~~~~~~a~ell~~AK 481 (482)
T TIGR02577 458 LIVH-------HKEPLYDALELARRLLKRAK 481 (482)
T ss_pred EEeC-------CCCcHHHHHHHHHHHHHHhc
Confidence 4332 12456778888888887765
No 23
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=84.19 E-value=18 Score=29.37 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=43.8
Q ss_pred eEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEe
Q psy16053 63 EVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAA 142 (351)
Q Consensus 63 ~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~ 142 (351)
.++++.++|.+|..+....+ ....-.++..+...+...+.. +..+-+..+|.++++
T Consensus 34 ~~~l~~i~i~~~~~~~~~~g----~~~~~~~l~~i~~~l~~~~~~--------------------~~~~~r~~~~~f~ii 89 (163)
T smart00267 34 PFALLLIDLDNFKDINDTYG----HAVGDELLQEVAQRLSSCLRP--------------------GDLLARLGGDEFALL 89 (163)
T ss_pred eEEEEEEEccccchhhhccC----chhHHHHHHHHHHHHHHhcCC--------------------CCEEEEecCceEEEE
Confidence 48999999999999988876 555666777777777666654 346677778888888
Q ss_pred eC
Q psy16053 143 SG 144 (351)
Q Consensus 143 fG 144 (351)
+.
T Consensus 90 ~~ 91 (163)
T smart00267 90 LP 91 (163)
T ss_pred ec
Confidence 73
No 24
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=83.46 E-value=8.5 Score=36.34 Aligned_cols=59 Identities=7% Similarity=0.103 Sum_probs=46.2
Q ss_pred EEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEeeC
Q psy16053 66 VLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASG 144 (351)
Q Consensus 66 VlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~fG 144 (351)
|.-+.|.||-.|++.+.+. .-.++..+-.+++..+.+.+.++ ||+..-+-||-+|++..
T Consensus 4 it~iqid~YgpWT~t~~pr-RE~dlQ~lQsrLya~L~~~~~~~-------------------ggl~Ff~RgDN~iavtN 62 (254)
T PRK02240 4 ITLIQIDNYGPWTVTPNPR-RESDLQALQSRLYADLAQQFGAR-------------------DGYVFFTRFDNMIAVTN 62 (254)
T ss_pred EEEEEecCCCcCcCCCCCc-cHHHHHHHHHHHHHHHHHHHHhC-------------------CCEEEeccCceEEEEcC
Confidence 4456678999999998743 11235556678888888888888 99999999999999973
No 25
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=82.92 E-value=38 Score=34.99 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=42.9
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...+++++||.+|..+-+..+ .+.--.+|..+...+...+.. +..+.+.-||-|++
T Consensus 428 ~~~~l~~idid~fk~iNd~~G----~~~GD~~L~~~a~~l~~~~~~--------------------~~~~~R~ggdeF~i 483 (570)
T PRK15426 428 QPFSVIQLDLDHFKSINDRFG----HQAGDRVLSHAAGLISSSLRA--------------------QDVAGRVGGEEFCV 483 (570)
T ss_pred CcEEEEEEECcccCHhhHhhC----hHHHHHHHHHHHHHHHHhCCC--------------------CCEEEeecCcEEEE
Confidence 458999999999999988776 333445555666666665543 45677899999988
Q ss_pred eeC
Q psy16053 142 ASG 144 (351)
Q Consensus 142 ~fG 144 (351)
++.
T Consensus 484 ll~ 486 (570)
T PRK15426 484 VLP 486 (570)
T ss_pred EeC
Confidence 873
No 26
>PRK11059 regulatory protein CsrD; Provisional
Probab=81.93 E-value=47 Score=35.29 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=54.7
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...++++.||.+|..+-+..+ ...--.+|..+-..+...+..+ ++..+-++-||-|.+
T Consensus 258 ~~~~ll~idid~fk~iNd~~G----h~~gD~~L~~va~~L~~~~~~~------------------~~~~~aR~ggdeFai 315 (640)
T PRK11059 258 AHGVVMLIRLPDFDLLQEEWG----ESQVEELLFELINLLSTFVMRY------------------PGALLARYSRSDFAV 315 (640)
T ss_pred CcEEEEEEECchHHHHHHhcC----hHHHHHHHHHHHHHHHHHHhcC------------------CCCEEEEecCCEEEE
Confidence 357899999999999988776 3344455666666666665543 145667889999988
Q ss_pred eeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy16053 142 ASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGIN 184 (351)
Q Consensus 142 ~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~ 184 (351)
+..- .+...|...|-+++..+....
T Consensus 316 ll~~------------------~~~~~a~~~a~~l~~~i~~~~ 340 (640)
T PRK11059 316 LLPH------------------RSLKEADSLASQLLKAVDALP 340 (640)
T ss_pred EeCC------------------CChHHHHHHHHHHHHHHHhcc
Confidence 8732 112335566667777666543
No 27
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=81.00 E-value=15 Score=38.66 Aligned_cols=124 Identities=13% Similarity=0.125 Sum_probs=82.8
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHH-HHHHcccccccccccccccccCCCccCEEEEEEeCceEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDF-DALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYM 140 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~m 140 (351)
.-++++|. -+|..++..++ ++-...+|.+...| .+.+..| +.+.-++.+|-|+
T Consensus 175 ~vl~~i~v--DNyDe~t~~~~-----d~~rs~inS~V~s~l~~~a~~~-------------------~if~rr~s~drf~ 228 (655)
T COG3887 175 PVLGIISV--DNYDEVTQGLS-----DSDRSQINSFVTSFLEEWATEY-------------------NIFLRRYSSDRFY 228 (655)
T ss_pred ceEEEEEe--ccHHHHhcCCC-----hhhHHHHHHHHHHHHHHHHHHh-------------------hhhheeecCCeEE
Confidence 33444444 47888888775 33455666666554 6677777 7888899999999
Q ss_pred EeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCCcceeEeCch
Q psy16053 141 AASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNT 220 (351)
Q Consensus 141 a~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~ 220 (351)
++... .-......-=..+...+.+...+...++.+.||+..|.- ...-+|+.
T Consensus 229 ~~~~~------------------~~L~~l~~~kF~iLd~~RE~s~~~~ipLTLSiGvg~g~~----------~~~elg~v 280 (655)
T COG3887 229 AFTNY------------------KILEKLEEDKFSILDEFREESSQKNIPLTLSIGVGYGEN----------NLIELGEV 280 (655)
T ss_pred EEecH------------------HHHHHHHHhhhHHHHHHHHHhhccCcceEEEEEeccCcc----------cHHHHHHH
Confidence 99832 556667777777788888777777788999999988843 23445665
Q ss_pred HHHHHHHHhcCCCCcEEeC
Q psy16053 221 VNVASRMESTGRAGFIQVT 239 (351)
Q Consensus 221 VN~AaRLe~~a~~g~I~vS 239 (351)
...+-+|...-...||.+-
T Consensus 281 A~~~L~lAlgRGGDQVvIk 299 (655)
T COG3887 281 AQSNLDLALGRGGDQVVIK 299 (655)
T ss_pred HHHhHHHHhccCCceEEEE
Confidence 5555555333233466664
No 28
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.
Probab=80.34 E-value=28 Score=28.59 Aligned_cols=58 Identities=14% Similarity=0.058 Sum_probs=42.1
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...+++.++|.+|..+....+ ....-.++..+...+...+.. +..+.+.-+|.|++
T Consensus 32 ~~~~l~~i~i~~~~~i~~~~G----~~~~~~ll~~~a~~l~~~~~~--------------------~~~i~r~~~~~f~i 87 (165)
T TIGR00254 32 RSFSVLMIDIDNFKKINDTLG----HDVGDEVLREVARILQSSVRG--------------------SDVVGRYGGEEFVV 87 (165)
T ss_pred CceEEEEEeccchhHHHHhhC----hhhHHHHHHHHHHHHHHhcCc--------------------CCEEEEecCCeEEE
Confidence 347899999999999887776 444556666666666665543 45677888888888
Q ss_pred ee
Q psy16053 142 AS 143 (351)
Q Consensus 142 ~f 143 (351)
++
T Consensus 88 l~ 89 (165)
T TIGR00254 88 IL 89 (165)
T ss_pred Ee
Confidence 87
No 29
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=79.77 E-value=58 Score=34.43 Aligned_cols=100 Identities=8% Similarity=0.082 Sum_probs=60.4
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...+++++||.+|..+-+..+ ...--.+|..+...+...+.. +..+-+.-||.|.+
T Consensus 261 ~~~~l~~idid~f~~in~~~G----~~~gD~lL~~va~~l~~~~~~--------------------~~~~aRl~gdeF~v 316 (660)
T PRK11829 261 DHFHLLVIGIETLQEVSGAMS----EAQHQQLLLTIVQRIEQCIDD--------------------SDLLAQLSKTEFAV 316 (660)
T ss_pred CCEEEEEEECCcHHHHHHhhC----hHHHHHHHHHHHHHHHHhCCC--------------------CcEEEEEeCCEEEE
Confidence 357899999999999988776 334445556666666555543 45677899999988
Q ss_pred eeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEE
Q psy16053 142 ASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITA 204 (351)
Q Consensus 142 ~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~ 204 (351)
++... +....+...|-++...+...- ......+++.++.|-+..
T Consensus 317 l~~~~-----------------~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~siGia~~ 360 (660)
T PRK11829 317 LARGT-----------------RRSFPAMQLARRIMSQVTQPL--FFDEITLRPSASIGITRY 360 (660)
T ss_pred EEcCC-----------------CCHHHHHHHHHHHHHHhcCCE--EECCEEEEEeEEEEEEEe
Confidence 87321 112234445555555554311 112344566666665543
No 30
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=79.42 E-value=19 Score=39.83 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=62.8
Q ss_pred EecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEeeCCCcC
Q psy16053 69 ASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPN 148 (351)
Q Consensus 69 ~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~fG~p~~ 148 (351)
..|-+|.+.....+ ..+-..+...+-+.+...+..| +++.-++..|-|++++.
T Consensus 210 i~iDNyde~~~~~~----~~~~s~l~~~i~~~l~~~~~~~-------------------~~~~r~~~~dry~~~~~---- 262 (838)
T PRK14538 210 ITFDNLEESLIRYD----LSEQSQIQGEYLSALSDFIEPY-------------------EGYLKQLIDDRFLLLIN---- 262 (838)
T ss_pred EEeeCHHHHhcccc----hHHHHHHHHHHHHHHHHHHHhC-------------------CEEEEEecCCcEEEEEE----
Confidence 33445555444444 2233444455555567777777 99998999999999992
Q ss_pred ccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeee
Q psy16053 149 FVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHG 200 (351)
Q Consensus 149 ~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG 200 (351)
.........-=..+.+.+...+.....++.+.||+..|
T Consensus 263 --------------~~~l~~~~~~kF~iLd~ir~~~~~~~~~vTLSiGig~g 300 (838)
T PRK14538 263 --------------RQNLDKMIENKFSILDTIRNISHKYQLKVTLSMGIACW 300 (838)
T ss_pred --------------HHHHHHHHHhCCcHHHHHHHhhcCCCCceEEEEEEeCC
Confidence 25666666666777888887776666778899998887
No 31
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=75.04 E-value=38 Score=27.23 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=42.7
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...++++.+|.+|..+....+ ....-.++..+...+...+.. ++.+-..-++.+++
T Consensus 30 ~~~~l~~i~i~~~~~i~~~~g----~~~~~~~l~~~~~~l~~~~~~--------------------~~~~~~~~~~~f~~ 85 (158)
T cd01949 30 RPLALLLIDIDHFKQINDTYG----HAAGDEVLKEVAERLRSSLRE--------------------SDLVARLGGDEFAI 85 (158)
T ss_pred CeEEEEEEEchhhhHHHHhhC----hHhHHHHHHHHHHHHHHhCCC--------------------CCEEEEecCCeEEE
Confidence 458899999999999988776 555666777777777666643 34566677788888
Q ss_pred ee
Q psy16053 142 AS 143 (351)
Q Consensus 142 ~f 143 (351)
++
T Consensus 86 l~ 87 (158)
T cd01949 86 LL 87 (158)
T ss_pred Ee
Confidence 87
No 32
>PRK13561 putative diguanylate cyclase; Provisional
Probab=69.03 E-value=1.3e+02 Score=31.69 Aligned_cols=58 Identities=5% Similarity=0.096 Sum_probs=43.1
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...++++.||.+|..+-...+ ...--.+|..+...+...+.. +..+-+.-||.|.+
T Consensus 257 ~~~~l~~idld~f~~in~~~G----~~~gD~lL~~ia~~L~~~~~~--------------------~~~~aRl~gdeF~i 312 (651)
T PRK13561 257 QTTALMIITCETLRDTAGVLK----EAQREILLLTLVEKLKSVLSP--------------------RMVLAQISGYDFAI 312 (651)
T ss_pred CCeEEEEEECCchHHHHHhhC----hHHHHHHHHHHHHHHHHhCCC--------------------CcEEEEEeCCEEEE
Confidence 568999999999999887765 334455666666666665543 45678899999988
Q ss_pred ee
Q psy16053 142 AS 143 (351)
Q Consensus 142 ~f 143 (351)
+.
T Consensus 313 ll 314 (651)
T PRK13561 313 IA 314 (651)
T ss_pred EE
Confidence 87
No 33
>PRK09776 putative diguanylate cyclase; Provisional
Probab=56.53 E-value=74 Score=35.63 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=40.0
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...+++++||.+|..+-+..+ ...--.+|..+...+...+.. +..+-+.-||.|.+
T Consensus 695 ~~~~l~~idid~fk~in~~~G----~~~gd~~L~~~a~~l~~~~~~--------------------~~~~~R~~gdeF~v 750 (1092)
T PRK09776 695 QRHALVFIDLDRFKAVNDSAG----HAAGDALLRELASLMLSMLRS--------------------SDVLARLGGDEFGL 750 (1092)
T ss_pred CcEEEEEEECcchHHHHHhhC----hhhHHHHHHHHHHHHHHhCCC--------------------cCEEEEecCcEEEE
Confidence 469999999999998877765 223334445555555444433 45677889999988
Q ss_pred ee
Q psy16053 142 AS 143 (351)
Q Consensus 142 ~f 143 (351)
++
T Consensus 751 l~ 752 (1092)
T PRK09776 751 LL 752 (1092)
T ss_pred Ee
Confidence 87
No 34
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=53.89 E-value=86 Score=29.56 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=40.2
Q ss_pred EecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEee-CCC
Q psy16053 69 ASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAAS-GLD 146 (351)
Q Consensus 69 ~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~f-G~p 146 (351)
+.|.||-.|++.+.+. .-..+..+-..++..+...+..+ ||++.-+-=|-++++. |++
T Consensus 4 i~l~~Y~eWTetlg~~-RE~~iQ~lQa~l~~~l~~~~~~~-------------------~g~~~~~R~D~~iavtnGi~ 62 (246)
T PF05165_consen 4 IQLDNYREWTETLGPD-REWDIQTLQARLYADLQQFFSSR-------------------GGLVFPTRYDNMIAVTNGID 62 (246)
T ss_dssp EEETTHHHHCCSSS----HHHHHHHHHHHHHHHHHHHHTT-------------------T-EEE-TTSSEEEEE-TT--
T ss_pred EEecCCccCcCCCCCc-hHHHHHHHHHHHHHHHHHHHHhc-------------------CCEEeeeeeeeEEEeecCCC
Confidence 5688999999998843 11235555577888888888888 9999999999998888 443
No 35
>PRK10060 RNase II stability modulator; Provisional
Probab=53.82 E-value=76 Score=33.94 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=41.5
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...++++.|+.+|..+-+..+ ...--.+|..+-..+...+.. +..+-+.-||.|++
T Consensus 265 ~~~~ll~idld~fk~iNd~~G----~~~gD~lL~~va~~L~~~~~~--------------------~d~vaRlggdeF~i 320 (663)
T PRK10060 265 NQVGIVYLDLDNFKKVNDAYG----HMFGDQLLQDVSLAILSCLEE--------------------DQTLARLGGDEFLV 320 (663)
T ss_pred CcEEEEEEECcchhHHHHhhC----cHHHHHHHHHHHHHHHHhCCC--------------------CCEEEEEcCCEEEE
Confidence 458899999999998766665 333344555555555555543 56778899999988
Q ss_pred eeC
Q psy16053 142 ASG 144 (351)
Q Consensus 142 ~fG 144 (351)
++.
T Consensus 321 ll~ 323 (663)
T PRK10060 321 LAS 323 (663)
T ss_pred EEc
Confidence 873
No 36
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=48.54 E-value=2e+02 Score=31.00 Aligned_cols=122 Identities=12% Similarity=0.133 Sum_probs=75.1
Q ss_pred eeEEEEEEecCCccccccccccccc----hHHHHHHHHHHHHH-HHHHHcccccccccccccccccCCCccCEEEEEEeC
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQ----GLECLRFLNEVISD-FDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIG 136 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~----~~~~~~~Ln~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iG 136 (351)
.-++||-+|.-+--.+......... -..+-+.|+.+|.. +..++..+ .+.+.++++=.-|
T Consensus 521 ~~lavl~~D~DnlG~~f~~g~~~~~~~s~~~~lS~~l~~fF~~~v~~i~~~~---------------~~~~~~~~VYaGG 585 (648)
T TIGR02578 521 KKLGVLKMDVDNLGEIFASGLKRPTRISRLATLSRQLELFFKLYLLHLAEDK---------------RNKRNLYVVYSGG 585 (648)
T ss_pred ceEEEEEccccCHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhh---------------ccCCCEEEEEEcc
Confidence 5799999999887776654321100 12345555555554 33444432 1223688888889
Q ss_pred ceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCCcceeE
Q psy16053 137 STYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDI 216 (351)
Q Consensus 137 D~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v 216 (351)
|-++++... ..++.+|.+|++.+...... ..+.+..||...+. . .-
T Consensus 586 DDv~~ig~~---------------------~~~l~~A~~i~~~F~~~~~~--~~~TlSaGi~i~~~-------k----~P 631 (648)
T TIGR02578 586 DDLFLIGPW---------------------NAVLELASDIREYFEKFTCR--DKITISAGVVVVSP-------K----YP 631 (648)
T ss_pred ccEEEEccH---------------------HHHHHHHHHHHHHHHHHhCC--CCeeEEEEEEECCC-------C----CC
Confidence 999988832 34788999999998876532 34555555443221 1 23
Q ss_pred eCchHHHHHHHHhcCC
Q psy16053 217 WGNTVNVASRMESTGR 232 (351)
Q Consensus 217 ~Gd~VN~AaRLe~~a~ 232 (351)
+....+.|.+++..|+
T Consensus 632 l~~~~~~aee~l~~AK 647 (648)
T TIGR02578 632 VYRAARIAEELLEAAK 647 (648)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4667788888877765
No 37
>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.
Probab=32.93 E-value=1.7e+02 Score=29.25 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=26.6
Q ss_pred CceEEEEEEee--------ecEEEEeeCCC-CcceeE-eCchHHHHHHHHh
Q psy16053 189 NHFVLKMGVNH--------GPITAGVIGAR-KPHYDI-WGNTVNVASRMES 229 (351)
Q Consensus 189 ~~l~lrIGIht--------G~v~~G~iG~~-~~~~~v-~Gd~VN~AaRLe~ 229 (351)
-+|.+|+|+=- ..|-+.-+... ...|-+ .|.....|.+...
T Consensus 105 f~l~LRvg~VPV~~Ir~~G~dvrvAr~~~S~~~~~amf~GgGL~~AE~~mK 155 (373)
T PF11294_consen 105 FDLELRVGLVPVSDIRAEGLDVRVARFAASPNVSYAMFSGGGLAWAEALMK 155 (373)
T ss_pred cCCceeEeeeEHHHHHhCCCeEEEEEEccCCCceEEEEecCcHHHHHHHHh
Confidence 34788887522 24555555544 345644 4999999999877
No 38
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=32.37 E-value=2.5e+02 Score=26.34 Aligned_cols=58 Identities=7% Similarity=0.088 Sum_probs=42.1
Q ss_pred EEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEee
Q psy16053 66 VLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAAS 143 (351)
Q Consensus 66 VlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~f 143 (351)
|..+-|.+|-.|++.+.+. .--.+..+-++++..+.+.+..+ +|++.-+-=|-++++-
T Consensus 4 it~Iqld~YgpWT~~p~pr-RE~dlQtlQarlyadl~~~~~~~-------------------~g~vf~~RfDnmlait 61 (250)
T COG2429 4 ITLIQLDNYGPWTETPGPR-REWDLQTLQARLYADLQKIFGGR-------------------GGLVFFTRFDNMLAIT 61 (250)
T ss_pred EEEEEecCcCcccCcCCCc-hHHHHHHHHHHHHHHHHHHHhcc-------------------CCeeeeeehhhhhHhh
Confidence 3445677999999998743 11235566688999999999888 8998777777666554
No 39
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=24.63 E-value=1.3e+02 Score=21.83 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Q psy16053 13 KEVESQKETASDIRRRNEALVYNIL 37 (351)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~lL~~~l 37 (351)
..+..+++.|+.++...+.+|.+||
T Consensus 36 ~~l~~e~~~L~~qN~eLr~lLkqYl 60 (60)
T PF14775_consen 36 AALIQEKESLEQQNEELRSLLKQYL 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4456778899999999999999886
No 40
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=23.85 E-value=96 Score=24.77 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhccCCc--eEEEEEEeeecEEEEeeCCCCcceeEeCchHHHHHHHHhcCC
Q psy16053 175 EMKKALTGINEQSFNH--FVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGR 232 (351)
Q Consensus 175 ~m~~~l~~~~~~~~~~--l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~VN~AaRLe~~a~ 232 (351)
++.+.+.+++...... +--.||+.-|.+..+ ...++|+++++|.-|-....
T Consensus 23 ELydL~~eI~kETeFdillfS~igv~~GD~~~s-------s~~alG~~~~lanlL~n~~~ 75 (100)
T PF10655_consen 23 ELYDLANEIDKETEFDILLFSTIGVSNGDFISS-------SHCALGNPFGLANLLDNADN 75 (100)
T ss_pred HHHHHHHHhcccceeeeeeeeeeccccCccccc-------cchhhccHHHHHHHHhhhhh
Confidence 4555555555443333 344889988988765 56899999999998865543
No 41
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.98 E-value=5.5e+02 Score=24.20 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=30.5
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCce
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGST 138 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~ 138 (351)
+.+||.--.+.+|.+-.+. ...++.++..++......+.+ .|..++++||-
T Consensus 60 ~~lTvYaFS~eN~~R~~~E------V~~Lm~L~~~~l~~~~~~~~~--------------------~~iri~viGd~ 110 (249)
T PRK14834 60 GYLTLFAFSSENWSRPASE------VSDLFGLLRLFIRRDLAELHR--------------------NGVRVRVIGER 110 (249)
T ss_pred CEEEEEEEeccccCCCHHH------HHHHHHHHHHHHHHHHHHHHH--------------------CCcEEEEEcCh
Confidence 6799988888888653222 113444455554433333333 57789999994
Done!