Query psy16053
Match_columns 351
No_of_seqs 267 out of 1643
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 19:39:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ab8_A Adenylyl cyclase; lyase 100.0 3.9E-43 1.3E-47 321.4 18.6 209 52-278 3-211 (220)
2 2wz1_A Guanylate cyclase solub 100.0 4.1E-41 1.4E-45 307.9 20.1 193 53-278 2-202 (219)
3 1yk9_A Adenylate cyclase; beta 100.0 1.3E-41 4.4E-46 307.9 8.9 187 56-279 3-189 (204)
4 3et6_A Soluble guanylyl cyclas 100.0 5.6E-40 1.9E-44 292.8 19.1 183 57-274 3-186 (190)
5 2w01_A Adenylate cyclase; guan 100.0 4.1E-39 1.4E-43 291.8 23.0 182 57-275 8-194 (208)
6 3uvj_A Guanylate cyclase solub 100.0 6.7E-40 2.3E-44 300.8 17.9 175 52-262 3-178 (225)
7 3r5g_A CYAB; adenylyl cyclase, 100.0 5.5E-39 1.9E-43 288.0 21.4 182 58-274 4-191 (198)
8 1azs_A VC1; complex (lyase/hyd 100.0 1.5E-39 5E-44 298.1 16.4 185 53-275 24-212 (220)
9 1wc3_A Adenylate cyclase; solu 100.0 2.3E-38 7.8E-43 289.5 20.4 183 57-275 21-214 (219)
10 1fx2_A Receptor-type adenylate 100.0 4.4E-37 1.5E-41 282.9 18.2 177 55-276 4-219 (235)
11 1ybt_A Hydrolase, alpha/beta h 100.0 3.7E-37 1.3E-41 274.4 16.0 171 54-276 8-178 (184)
12 1y10_A Hypothetical protein RV 100.0 1E-36 3.4E-41 301.9 18.3 199 22-275 160-376 (407)
13 3mr7_A Adenylate/guanylate cyc 100.0 3.6E-35 1.2E-39 261.8 19.3 169 59-278 3-175 (189)
14 3hls_A Guanylate cyclase solub 96.9 0.0024 8.2E-08 46.8 6.6 39 9-47 27-65 (66)
15 3i5c_A Fusion of general contr 94.2 0.37 1.3E-05 41.1 10.7 59 62-143 60-118 (206)
16 3ezu_A Ggdef domain protein; m 92.5 1.5 5.2E-05 41.4 12.9 97 62-201 212-308 (342)
17 2qv6_A MJ0145, GTP cyclohydrol 91.9 0.96 3.3E-05 41.7 10.1 62 60-144 128-190 (268)
18 3tvk_A DGC, diguanylate cyclas 90.2 0.47 1.6E-05 40.8 6.1 79 62-182 32-110 (179)
19 3hva_A Protein FIMX; ggdef dig 89.4 1 3.5E-05 37.3 7.4 58 62-143 43-100 (177)
20 3ign_A Diguanylate cyclase; gg 86.6 1.2 4.1E-05 36.9 6.1 58 62-143 38-95 (177)
21 3icl_A EAL/ggdef domain protei 84.3 3.3 0.00011 33.8 7.8 59 62-144 29-87 (171)
22 3mtk_A Diguanylate cyclase/pho 84.1 2.1 7.2E-05 35.6 6.5 58 62-143 35-92 (178)
23 3qyy_A Response regulator; C-D 82.6 3.2 0.00011 33.9 7.0 58 62-143 41-98 (167)
24 3bre_A Probable two-component 79.5 4.1 0.00014 37.7 7.2 60 62-144 201-260 (358)
25 1w25_A Stalked-cell differenti 74.7 6.3 0.00021 38.0 7.3 59 62-144 318-376 (459)
26 3pjx_A Cyclic dimeric GMP bind 71.0 18 0.00062 34.6 9.6 100 62-199 47-148 (430)
27 3hvw_A Diguanylate-cyclase (DG 56.6 17 0.00058 29.9 5.6 58 62-144 26-86 (176)
28 2qv6_A MJ0145, GTP cyclohydrol 46.9 76 0.0026 28.9 8.6 59 66-144 4-62 (268)
29 3hvb_A Protein FIMX; EAL phosp 33.8 8.7 0.0003 37.0 0.0 58 62-143 43-100 (437)
30 3ung_C CMR2DHD; ferredoxin fol 32.8 1.4E+02 0.0047 30.9 8.6 92 90-233 467-562 (693)
No 1
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*
Probab=100.00 E-value=3.9e-43 Score=321.38 Aligned_cols=209 Identities=57% Similarity=0.926 Sum_probs=160.0
Q ss_pred cccccccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEE
Q psy16053 52 QHEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIK 131 (351)
Q Consensus 52 ~~~~~~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~ 131 (351)
.++.++.++++++||||+||+|||.+++.++....|++++.+||++|..|+.++.+| +|.||++
T Consensus 3 ~~~~~~~~~~~~vtvlF~DI~gfT~l~~~l~~~~~p~~~~~~Ln~~~~~~~~~i~~~----------------~~~g~~~ 66 (220)
T 1ab8_A 3 KNEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKP----------------KFSGVEK 66 (220)
T ss_dssp ----CCEEEEEEEEEEEEECTTHHHHCCCSTTTTTTHHHHHHHHHHHHHHHGGGGSG----------------GGTTEEE
T ss_pred CCCcccccccCcEEEEEEEccchHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhh----------------ccCCeEE
Confidence 346788899999999999999999999988644447899999999999999999986 3338999
Q ss_pred EEEeCceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCC
Q psy16053 132 IKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARK 211 (351)
Q Consensus 132 vk~iGD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~ 211 (351)
+|++||+|||+||+|.....+ ..+..+...+|+.+|++||++|++.+..++.....++.+|||||+|+|++|++|..+
T Consensus 67 ik~iGD~~ma~fg~p~~~~~~--~~~~~~~~~~~a~~a~~~Al~~~~~l~~~~~~~~~~l~~rIGIh~G~v~~G~iG~~r 144 (220)
T 1ab8_A 67 IKTIGSTYMAATGLSAIPSQE--HAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQK 144 (220)
T ss_dssp EEEETTEEEEEECCCCSCCC----------CCHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCEEEEEEEEEEEEEECSSS
T ss_pred EEEeCceEEEEECCCcccccc--ccccccccHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEEeeeEEEEeecCCc
Confidence 999999999999998731100 000001122899999999999999999998877778999999999999999999998
Q ss_pred cceeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcCCeeEEEcceEEecCcCceEEEEEeeccCC
Q psy16053 212 PHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLLGKSTT 278 (351)
Q Consensus 212 ~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~~~~~~~~g~v~lKG~~~~~~~~~~~~~~~ 278 (351)
++||+||++||+|+||+++|++|+|+||+++++.+...+|.|+++|.+.+||++.|++||+..+...
T Consensus 145 ~~y~v~Gd~VN~AaRle~~a~~g~I~vS~~~~~~l~~~~~~~~~~g~~~lKG~~~~~~~~~~~~~~~ 211 (220)
T 1ab8_A 145 PQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFVNTEMSR 211 (220)
T ss_dssp CEEEEESHHHHHHHHHHHTCCTTCEEECHHHHHHHHHHTCCCCC---------------CCC-----
T ss_pred eeEEEECcHHHHHHHHHhcCCCCeEEECHHHHHHhhcCceEEEEeccEEecCCCceEEEEEecccCC
Confidence 9999999999999999999999999999999999987459999999999999999999998876543
No 2
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Probab=100.00 E-value=4.1e-41 Score=307.90 Aligned_cols=193 Identities=31% Similarity=0.563 Sum_probs=172.3
Q ss_pred ccccccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHc---ccccccccccccccccCCCccCE
Q psy16053 53 HEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLE---LPKFKEWSRPIKSLLELPKFKEV 129 (351)
Q Consensus 53 ~~~~~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~gg 129 (351)
|+...+.+++++||||+||+|||.+++.++....|++++.+||+|+..++.++. .| +|
T Consensus 2 G~~~~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~-------------------~g 62 (219)
T 2wz1_A 2 KRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNP-------------------FV 62 (219)
T ss_dssp ---CCCEEEEEEEEEEEEETTHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHHCTTTCT-------------------TC
T ss_pred CCccCccceeeEEEEEEEccCcHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhccC-------------------CE
Confidence 356778889999999999999999999876333478999999999999999999 67 99
Q ss_pred EEEEEeCceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCC
Q psy16053 130 IKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGA 209 (351)
Q Consensus 130 ~~vk~iGD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~ 209 (351)
+++|++||+|||+||.|.... +|+.+|++||++|++.+..++.. ..++.+|||||+|+|++|++|+
T Consensus 63 ~~~k~~GD~~ma~fg~p~~~~-------------~~a~~A~~~Al~~~~~~~~~~~~-~~~l~~rIGi~~G~v~~G~iG~ 128 (219)
T 2wz1_A 63 YKVETVGDKYMTVSGLPEPCI-------------HHARSICHLALDMMEIAGQVQVD-GESVQITIGIHTGEVVTGVIGQ 128 (219)
T ss_dssp EEECCCTTCEEEEESSSSCCT-------------THHHHHHHHHHHHHHHHTTCEET-TEECCEEEEEEEEEEEEEEECS
T ss_pred EEEeecCCEEEEEECCCCCCh-------------hHHHHHHHHHHHHHHHHHHHhcc-CCceEEEEEEEEEEEEEEEeCC
Confidence 999999999999999998655 89999999999999999988654 5679999999999999999999
Q ss_pred CCcceeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhh-----cCCeeEEEcceEEecCcCceEEEEEeeccCC
Q psy16053 210 RKPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQ-----HFGYIFEQRGLVSVKGKGQLMTYYLLGKSTT 278 (351)
Q Consensus 210 ~~~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~-----~~~~~~~~~g~v~lKG~~~~~~~~~~~~~~~ 278 (351)
.+++||+||++||+|+||+++|.+|+|+||+++++.+. ...|.++++|.+.+||++.|+++|.+.....
T Consensus 129 ~~~~~~v~Gd~VN~AaRLe~~a~~~~IlvS~~~~~~l~~~~~~~~~~~~~~~g~~~lKG~~~~~~vy~l~~~~~ 202 (219)
T 2wz1_A 129 RMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRKNT 202 (219)
T ss_dssp SSCEEEEESHHHHHHHHHHHTSCTTSEEEEHHHHHHTTSTTTCCTTEEEEEEEEECCTTCSSCEEEEEEEESCC
T ss_pred CceEEEEECHHHHHHHHHHhcCCCCeEEECHHHHHHHhhhcccCCceEEEEeCCEEecCCCccEEEEEEeccCc
Confidence 98899999999999999999999999999999999997 1279999999999999999999998876543
No 3
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.3e-41 Score=307.86 Aligned_cols=187 Identities=36% Similarity=0.657 Sum_probs=170.7
Q ss_pred cccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEe
Q psy16053 56 LYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTI 135 (351)
Q Consensus 56 ~~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~i 135 (351)
..+.+++++||||+||+|||.+++.++ |++++.+||+|+..+++++.+| ||+++|++
T Consensus 3 ~~~~~~~~vtvlf~DI~gfT~l~~~~~----~~~~~~~ln~~~~~~~~~i~~~-------------------gG~v~k~~ 59 (204)
T 1yk9_A 3 IIADKYDEASVLFADIVGFTERASSTA----PADLVRFLDRLYSAFDELVDQH-------------------GLEKIEVS 59 (204)
T ss_dssp ---CCCSCEEEEEEEESCSSCSSCCCC----SSSTTTHHHHHHTTTTGGGTTS-------------------SCEECCCS
T ss_pred CCccccCcEEEEEEEccChHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHc-------------------CCEEEEEe
Confidence 346678999999999999999999987 7889999999999999999999 99999999
Q ss_pred CceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCCccee
Q psy16053 136 GSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYD 215 (351)
Q Consensus 136 GD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~~~~~ 215 (351)
||++||+||+|.... +|+.+|++||++|++.+..++.....++.+|||||+|+|++|++|+.+++|+
T Consensus 60 GD~~ma~fg~p~~~~-------------~~a~~A~~~Al~~~~~~~~~~~~~~~~l~~rIGI~tG~v~~g~vG~~r~~~~ 126 (204)
T 1yk9_A 60 GDSYMVVSGVPRPRP-------------DHTQALADFALDMTNVAAQLKDPRGNPVPLRVGLATGPVVAGVVGSRRFRYC 126 (204)
T ss_dssp SSCEEEESCCSSCCT-------------THHHHHHTHHHHHHHHTTTCCSSSCCCCCEEEEEEEECEEECCCCSSSCCCC
T ss_pred CCeEEEEECCCCCCh-------------HHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEEeeEEEEEEecCCCceEE
Confidence 999999999997654 8999999999999999998887767789999999999999999999888999
Q ss_pred EeCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcCCeeEEEcceEEecCcCceEEEEEeeccCCC
Q psy16053 216 IWGNTVNVASRMESTGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLLGKSTTG 279 (351)
Q Consensus 216 v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~~~~~~~~g~v~lKG~~~~~~~~~~~~~~~~ 279 (351)
+||++||+|+||++++.+|+|+||+++++.+.+ .|.|+++|.+.+||++.+.+|++.+.....
T Consensus 127 v~G~~Vn~AaRle~~a~~g~I~vs~~~~~~l~~-~~~~~~~g~~~lkG~~~~~~y~l~~~~~~~ 189 (204)
T 1yk9_A 127 VWGDAVNVASRMESTDSVGQIQVPDEVYERLKD-DFVLRERGHINVKGKGVMRTWYLIGRKVAA 189 (204)
T ss_dssp EEEHHHHHTTHHHHSCSTTCEEBCHHHHHCCTT-CEEEEECCCCCCSSSSSCCCCEEEEEECCC
T ss_pred EEChHHHHHHHHHhcCCCCeEEECHHHHHHhhc-CeeEEEcceEEecCCCccEEEEEEeccCCC
Confidence 999999999999999999999999999999998 799999999999999976677777665443
No 4
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=100.00 E-value=5.6e-40 Score=292.79 Aligned_cols=183 Identities=34% Similarity=0.585 Sum_probs=166.0
Q ss_pred ccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeC
Q psy16053 57 YSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIG 136 (351)
Q Consensus 57 ~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iG 136 (351)
.+.+++++||||+||+|||.+++.++ |++++.+||+++..+++++.+|| |++++|++|
T Consensus 3 ~~~e~~~vtvlf~Di~gft~l~~~~~----~~~~~~~l~~~~~~~~~~i~~~~------------------g~~~vk~~G 60 (190)
T 3et6_A 3 PAQEHPEATVLFSDIVGFTEIASRSS----PLEVXSLLDELYQRFDAAIEEYP------------------QLYKVETIG 60 (190)
T ss_dssp CCEEEEEEEEEEEEETTHHHHTTTSC----HHHHHHHHHHHHHHHHHHGGGCT------------------TEEEEECTT
T ss_pred CccccceEEEEEeEecChhHhHhhCC----HHHHHHHHHHHHHHHHHHHHHcC------------------CEEEEEEeC
Confidence 35678999999999999999999988 99999999999999999999883 777789999
Q ss_pred ceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCCcceeE
Q psy16053 137 STYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDI 216 (351)
Q Consensus 137 D~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v 216 (351)
|++||+||+|.... +|+.+|++||++|++.+..++.....++.+|||||+|+|++|++|..+++|++
T Consensus 61 D~~~a~fg~~~~~~-------------~~~~~a~~~al~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~~~~v 127 (190)
T 3et6_A 61 DAYMVVCNVTVPCD-------------DHADVLLEFALRMHEEASRVASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFXL 127 (190)
T ss_dssp SCEEEEESSSSCCS-------------THHHHHHHHHHHHHHHHHTSCCC---CCCEEEEEEEEEEEEEEECSSSCEEEE
T ss_pred CEEEEEECCCCCch-------------hHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEEeccEEEEecCCCcceEEe
Confidence 99999999998755 89999999999999999988777667899999999999999999998779999
Q ss_pred eCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcC-CeeEEEcceEEecCcCceEEEEEee
Q psy16053 217 WGNTVNVASRMESTGRAGFIQVTEETTHILQHF-GYIFEQRGLVSVKGKGQLMTYYLLG 274 (351)
Q Consensus 217 ~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~-~~~~~~~g~v~lKG~~~~~~~~~~~ 274 (351)
||++||+|+||++.|++|+|+||+++++.+... .|.++++|.+.+||++.+.+||+..
T Consensus 128 ~G~~Vn~Aarl~~~a~~~~I~vs~~~~~~l~~~~~~~~~~~g~~~lkG~~~~~~y~l~~ 186 (190)
T 3et6_A 128 FGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRERGNITVKGKGTMRTYLLSP 186 (190)
T ss_dssp ESHHHHHHHHHHHTSCTTSEEEEHHHHHHCSCGGGTCCCCEEEECCSSSSCEEEEEECC
T ss_pred cCcchhHHHHHHhcCCCCeEEECHHHHHHhCcCCceEEEEcCCEEecCCCeEEEEEEec
Confidence 999999999999999999999999999999763 6999999999999999877777664
No 5
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=100.00 E-value=4.1e-39 Score=291.85 Aligned_cols=182 Identities=18% Similarity=0.240 Sum_probs=168.5
Q ss_pred ccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeC
Q psy16053 57 YSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIG 136 (351)
Q Consensus 57 ~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iG 136 (351)
...+++++||||+||+|||.+++.++ |++++.+||.+++.+++++.+| ||+++|++|
T Consensus 8 l~~e~~~vtvlf~Di~gfT~l~~~~~----~~~~~~~l~~~~~~~~~~i~~~-------------------~G~v~k~~G 64 (208)
T 2w01_A 8 MGGDRRPITILTSDLRGFTSTSEGLN----PEEVVKVLNIYFGKMADVITHH-------------------GGTIDEFMG 64 (208)
T ss_dssp CCCEEEEEEEEEEECTTHHHHGGGSC----HHHHHHHHHHHHHHHHHHHHHT-------------------TCEEEEEET
T ss_pred CCCeEEEEEEEEEEecChHHHHhhCC----HHHHHHHHHHHHHHHHHHHHHc-------------------CCEEEEEEc
Confidence 45667999999999999999999988 8999999999999999999999 999999999
Q ss_pred ceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhc----cCCceEEEEEEeeecEEEEeeCCC-C
Q psy16053 137 STYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQ----SFNHFVLKMGVNHGPITAGVIGAR-K 211 (351)
Q Consensus 137 D~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~----~~~~l~lrIGIhtG~v~~G~iG~~-~ 211 (351)
|++||+||.|.... +|+.+|++||++|++.+..+|.. ...++++|||||+|+|++|++|+. +
T Consensus 65 D~~~a~fg~p~~~~-------------~~a~~Av~~Al~~~~~l~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~r 131 (208)
T 2w01_A 65 DGILVLFGAPTSQQ-------------DDALRAVACGVEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGSEKR 131 (208)
T ss_dssp TEEEEEESSSSCCT-------------THHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCEEEEEEEEEEEEEEECSSC
T ss_pred CEEEEEECCCCCCh-------------hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeEEEEEEeCCCCe
Confidence 99999999997654 89999999999999999988753 346799999999999999999986 7
Q ss_pred cceeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcCCeeEEEcceEEecCcCceEEEEEeec
Q psy16053 212 PHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLLGK 275 (351)
Q Consensus 212 ~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~~~~~~~~g~v~lKG~~~~~~~~~~~~ 275 (351)
++|++||++||+|+||+++|.+|+|+||+++++.+.. .|.++.+|.+.+||+..|+.+|.+..
T Consensus 132 ~~~~v~G~~Vn~AaRl~~~a~~~~I~vs~~~~~~l~~-~~~~~~~~~~~lkG~~~~~~vy~v~~ 194 (208)
T 2w01_A 132 TKYGVVGAQVNLTYRIESYTTGGQIFISSTTLEAAGD-RVHVNGNRTVQPKGVKDPVVIWDVAG 194 (208)
T ss_dssp EEEEEESHHHHHHHHHHHTCCTTCEEEEHHHHHHHCT-TEEEEEEEEECCTTCSSCEEEEEEEE
T ss_pred eEEEEECHHHHHHHHHHccCCCCeEEECHHHHHhhhc-ceEecccceEeecCCCCcEEEEEEcc
Confidence 7999999999999999999999999999999999998 69999999999999999998776643
No 6
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}
Probab=100.00 E-value=6.7e-40 Score=300.84 Aligned_cols=175 Identities=25% Similarity=0.451 Sum_probs=163.3
Q ss_pred cccccccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEE
Q psy16053 52 QHEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIK 131 (351)
Q Consensus 52 ~~~~~~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~ 131 (351)
+++...+.+++++||||+||+|||.+++.++ |++++.+||+++..++.++..| +|++
T Consensus 3 ~g~~~~~~~~~~vtvlF~Di~gfT~l~~~~~----~~~~~~~ln~~~~~~~~~i~~~-------------------~g~v 59 (225)
T 3uvj_A 3 QGQVVQAKKFSNVTMLFSDIVGFTAICSQCS----PLQVITMLNALYTRFDQQCGEL-------------------DVYK 59 (225)
T ss_dssp --CEEEEEEEEEEEEEEEEETTHHHHHHHSC----HHHHHHHHHHHHHHHHHHHHHH-------------------TCEE
T ss_pred CCCccCCcccceEEEEEEEccChHHHHhcCC----HHHHHHHHHHHHHHHHHHHHhc-------------------CeEE
Confidence 4567788899999999999999999999988 9999999999999999999999 9999
Q ss_pred EEEeCceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCC
Q psy16053 132 IKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARK 211 (351)
Q Consensus 132 vk~iGD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~ 211 (351)
+|++||+|||+||+|.... +|+.+|+.||++|++.+..++.....++.+|||||+|+|++|++|..+
T Consensus 60 ~k~~GD~~ma~fg~p~~~~-------------~~a~~a~~~al~~~~~~~~~~~~~~~~l~~riGih~G~v~~G~iG~~~ 126 (225)
T 3uvj_A 60 VETIGDAYCVAGGLHKESD-------------THAVQIALMALKMMELSDEVMSPHGEPIKMRIGLHSGSVFAGVVGVKM 126 (225)
T ss_dssp ECCSTTCEEEEESSSSCCT-------------THHHHHHHHHHHHHHHHTTSBCTTSCBCCEEEEEEEEEEEEEEECC-C
T ss_pred EEeeCcEEEEEECCCCCch-------------HHHHHHHHHHHHHHHHHHHHHhhcCCceEEEEEEEeccEEEEEecCCC
Confidence 9999999999999988755 899999999999999999888777778999999999999999999998
Q ss_pred cceeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcC-CeeEEEcceEEec
Q psy16053 212 PHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHF-GYIFEQRGLVSVK 262 (351)
Q Consensus 212 ~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~-~~~~~~~g~v~lK 262 (351)
++||+||++||+|+||+++|.+|+|+||++|++.+... +|.|+++|.+.+|
T Consensus 127 ~~~~~~Gd~VN~AaRle~~a~~~~I~vS~~~~~~l~~~~~~~~~~~g~~~lk 178 (225)
T 3uvj_A 127 PRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREELP 178 (225)
T ss_dssp CEEEEESHHHHHHHHHHHTSCTTCEEECHHHHHHHTTSTTEEEEECCSTTSC
T ss_pred ceEEEECcHHHHHHHHHhcCCCCeEEECHHHHHhhcCCCceEEEEcCcEEec
Confidence 89999999999999999999999999999999999985 6999999999995
No 7
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=100.00 E-value=5.5e-39 Score=287.95 Aligned_cols=182 Identities=24% Similarity=0.333 Sum_probs=167.4
Q ss_pred cceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCc
Q psy16053 58 SQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGS 137 (351)
Q Consensus 58 ~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD 137 (351)
..+.+++||||+||+|||.+++.++ |++++.+||.++..+++++.+| ||+++|++||
T Consensus 4 ~~e~~~vtvlf~Di~gft~l~~~~~----~~~~~~~l~~~~~~~~~~i~~~-------------------~G~v~k~~GD 60 (198)
T 3r5g_A 4 ETQRKKLTVFFSDIRGFTELSEELE----AEALTDLLNNYLNEMSKIALKY-------------------GGTIDKFVGD 60 (198)
T ss_dssp CCEEEEEEEEEEEEETHHHHHTTSC----HHHHHHHHHHHHHHHHHHHHHH-------------------TCEEEEEETT
T ss_pred CceEEEEEEEEEEccccchhhhhCC----HHHHHHHHHHHHHHHHHHHHHc-------------------CCEEEeeeCC
Confidence 4467999999999999999999988 9999999999999999999999 9999999999
Q ss_pred eEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhc-----cCCceEEEEEEeeecEEEEeeCCC-C
Q psy16053 138 TYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQ-----SFNHFVLKMGVNHGPITAGVIGAR-K 211 (351)
Q Consensus 138 ~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~-----~~~~l~lrIGIhtG~v~~G~iG~~-~ 211 (351)
++||+||.|.... ..+++.+|+.||++|++.+..++.. ...++++|||||+|+|++|++|.. +
T Consensus 61 ~~~a~fg~p~~~~-----------~~~~a~~a~~~al~i~~~~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~~~ 129 (198)
T 3r5g_A 61 CVMVFFGDPSTQG-----------AKKDAVAAVSMGIAMRKHMKVLRQQWRAQGITKPLEIRMGINTGYCTVGNFGADTR 129 (198)
T ss_dssp EEEEEESSSSCSC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCCEEEEEEEEEEEEEEEEEETTE
T ss_pred EEEEEECCCcccc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEEEEEEEeCCCcc
Confidence 9999999997642 1289999999999999999988753 135799999999999999999998 6
Q ss_pred cceeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcCCeeEEEcceEEecCcCceEEEEEee
Q psy16053 212 PHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLLG 274 (351)
Q Consensus 212 ~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~~~~~~~~g~v~lKG~~~~~~~~~~~ 274 (351)
++|++||++||+|+||++.|++|+|+||+++++.+.+ .|.++++|.+.+||+.+|+.+|.+-
T Consensus 130 ~~~~v~G~~Vn~Aarl~~~a~~~~I~vs~~~~~~l~~-~~~~~~~g~~~lkG~~~p~~vy~v~ 191 (198)
T 3r5g_A 130 MDYTIIGREVNLASRLESASEAGEILISHETYSLIKD-VIMCRDKGQIAVKGFSRPVQIYQVV 191 (198)
T ss_dssp EEEEEESHHHHHHHHHHHHCCTTCEEEEHHHHHHHTT-TSCEEEEEEECCTTCSSCEEEEEEC
T ss_pred eEEEEECcHHHHHHHHHhhCCCCcEEECHHHHHHhhc-CceEEEcccEEeecCCCcEEEEEEe
Confidence 7999999999999999999999999999999999998 6999999999999999999988774
No 8
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*
Probab=100.00 E-value=1.5e-39 Score=298.10 Aligned_cols=185 Identities=29% Similarity=0.497 Sum_probs=167.5
Q ss_pred ccccccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEE
Q psy16053 53 HEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKI 132 (351)
Q Consensus 53 ~~~~~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~v 132 (351)
...++.++++++||||+||+|||.+++.++ |++++.+||+++..+++++.+| ||+++
T Consensus 24 ~~~l~~~~~~~vtvlF~DI~gfT~l~e~~~----~~~~~~~Ln~~~~~~~~~i~~~-------------------gG~v~ 80 (220)
T 1azs_A 24 FHKIYIQKHDNVSILFADIEGFTSLASQCT----AQELVMTLNELFARFDKLAAEN-------------------HCLRI 80 (220)
T ss_dssp SCCCEEEEEEEEEEEEEEEETHHHHHHHSC----HHHHHHHHHHHHHHHHHHHHHH-------------------TEEEE
T ss_pred cccccccccccEEEEEEEccChHHHHhhCC----HHHHHHHHHHHHHHHHHHHHHc-------------------CcEEE
Confidence 456778889999999999999999999988 9999999999999999999999 99999
Q ss_pred EEeCceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCCc
Q psy16053 133 KTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKP 212 (351)
Q Consensus 133 k~iGD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~~ 212 (351)
|++||+|||+||+|.... +|+.+|++||++|++.+..++.....++.+|||||+|+|++|++|+.++
T Consensus 81 k~iGD~~ma~fg~p~~~~-------------~~a~~Av~~Al~m~~~l~~~~~~~~~~l~irIGI~tG~v~~G~vG~~~~ 147 (220)
T 1azs_A 81 KILGDCYYCVSGLPEARA-------------DHAHCCVEMGMDMIEAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKW 147 (220)
T ss_dssp EEETTEEEEEESCSSCCS-------------THHHHHHHHHHHHHHHHHHHHHHHCSCCEEEEEEEEEEEEEEECSSSSC
T ss_pred EEeCCeEEEEECCCCCCh-------------HHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEeEEEEEEeCCCCc
Confidence 999999999999998654 8999999999999999999987666789999999999999999999988
Q ss_pred ceeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcCCeeEEEcc----eEEecCcCceEEEEEeec
Q psy16053 213 HYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHFGYIFEQRG----LVSVKGKGQLMTYYLLGK 275 (351)
Q Consensus 213 ~~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~~~~~~~~g----~v~lKG~~~~~~~~~~~~ 275 (351)
+||+||++||+|+||+++|++|+|+||+++++.+.+ .|.+++.+ .+.+||++ ..+|++.++
T Consensus 148 ~y~v~Gd~VN~AaRLe~~a~~g~IlvS~~t~~~l~~-~f~~~~~~~~~r~~~lKg~~-v~~Y~l~~~ 212 (220)
T 1azs_A 148 QFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLNG-DYEVEPGCGGERNAYLKEHS-IETFLILRC 212 (220)
T ss_dssp CCEEESHHHHHHHHHHHTCCTTSEEECSTTTTTTTT-CSCEEECCGGGTCHHHHHTT-CCCEEEC--
T ss_pred EEEEEchHHHHHHHHHhcCCCCeEEECHHHHHhhcC-ceEEEECcCccccceecCCc-eEEEEEecc
Confidence 999999999999999999999999999999999998 69999853 35789986 445555543
No 9
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Probab=100.00 E-value=2.3e-38 Score=289.50 Aligned_cols=183 Identities=17% Similarity=0.261 Sum_probs=166.0
Q ss_pred ccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeC
Q psy16053 57 YSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIG 136 (351)
Q Consensus 57 ~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iG 136 (351)
...+.+++||||+||+|||.+++.++ |++++.+||+|+..+++++.+| ||+++|++|
T Consensus 21 l~~e~~~vtvlF~DI~gfT~l~~~~~----~~~~~~~Ln~~~~~~~~~i~~~-------------------gG~v~k~iG 77 (219)
T 1wc3_A 21 MRPEPRLITILFSDIVGFTRMSNALQ----SQGVAELLNEYLGEMTRAVFEN-------------------QGTVDKFVG 77 (219)
T ss_dssp CCCEEEEEEEEEEEEESHHHHHHTSC----HHHHHHHHHHHHHHHHHHHHHT-------------------TCEEEEEET
T ss_pred cCCceeEEEEEEEEecChHHHHhhCC----HHHHHHHHHHHHHHHHHHHHHc-------------------CCEEEEEEc
Confidence 45567999999999999999999988 8999999999999999999999 999999999
Q ss_pred ceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhc----------cCCceEEEEEEeeecEEEEe
Q psy16053 137 STYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQ----------SFNHFVLKMGVNHGPITAGV 206 (351)
Q Consensus 137 D~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~----------~~~~l~lrIGIhtG~v~~G~ 206 (351)
|+|||+||.|.... ..+|+.+|++||++|++.+..++.. ...++.+|||||+|+|++|+
T Consensus 78 D~~ma~fg~p~~~~-----------~~~~a~~Av~~Al~~~~~l~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~ 146 (219)
T 1wc3_A 78 DAIMALYGAPEEMS-----------PSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGL 146 (219)
T ss_dssp TEEEEEESSSSCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTCCCCEEEEEEEEEEEEEEE
T ss_pred CeEEEEECCCCCCC-----------ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCccEEEEEEEeceEEEEE
Confidence 99999999986532 1278999999999999999988743 23679999999999999999
Q ss_pred eCCC-CcceeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcCCeeEEEcceEEecCcCceEEEEEeec
Q psy16053 207 IGAR-KPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLLGK 275 (351)
Q Consensus 207 iG~~-~~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~~~~~~~~g~v~lKG~~~~~~~~~~~~ 275 (351)
+|.. +++|++||++||+|+||++.|++|+|+||+++++.+.. +.|+++|.+.+||+++|+.+|.+..
T Consensus 147 vG~~~r~~y~v~Gd~VN~AaRLe~~a~~g~IlvS~~~~~~l~~--~~~~~~g~~~lKG~~~~v~vy~v~~ 214 (219)
T 1wc3_A 147 FGSQERSDFTAIGPSVNIAARLQEATAPNSIMVSAMVAQYVPD--EEIIKREFLELKGIDEPVMTCVINP 214 (219)
T ss_dssp EEETTEEEEEEESHHHHHHHHHHHHSCTTEEEEEHHHHTTSCG--GGEEEEEEECCTTCSSCEEEEEECS
T ss_pred cCCCCeeEEEEECHHHHHHHHHHhcCCCCeEEECHHHHHhhcc--cceeEeeeEEecccCCcEEEEEEcC
Confidence 9986 77999999999999999999999999999999999987 3688999999999999999998854
No 10
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Probab=100.00 E-value=4.4e-37 Score=282.94 Aligned_cols=177 Identities=18% Similarity=0.223 Sum_probs=156.2
Q ss_pred ccccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEE
Q psy16053 55 ELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKT 134 (351)
Q Consensus 55 ~~~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~ 134 (351)
...+..++++||||+||+|||.+++.+ |++++.+||.++..+++++.+| ||+++|+
T Consensus 4 ~~~~~~~~~vtvlF~DI~gfT~l~~~~-----~~~~~~~l~~~~~~~~~~i~~~-------------------~G~v~k~ 59 (235)
T 1fx2_A 4 RAPKEPTDPVTLIFTDIESSTALWAAH-----PDLMPDAVAAHHRMVRSLIGRY-------------------KCYEVKT 59 (235)
T ss_dssp GSCCCTTSCEEEEEEEETTHHHHHHHC-----TTTHHHHHHHHHHHHHHHHHHT-------------------TCEEEEE
T ss_pred cCCCCCCCcEEEEEEeccChHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHc-------------------CCEEEEE
Confidence 455677899999999999999999975 5679999999999999999999 9999999
Q ss_pred eCceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhc----------------------------
Q psy16053 135 IGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQ---------------------------- 186 (351)
Q Consensus 135 iGD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~---------------------------- 186 (351)
+||+|||+||.|. +|++||++|++.+...++.
T Consensus 60 ~GD~~ma~fg~p~--------------------~A~~~Al~i~~~l~~~~w~~~~l~~~~~~~~~~~~~~~~~~~p~~~~ 119 (235)
T 1fx2_A 60 VGDSFMIASKSPF--------------------AAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAH 119 (235)
T ss_dssp ETTEEEEEESCHH--------------------HHHHHHHHHHHHHHHSCCSCSHHHHHHHHHHHHHHHHCSSCCCSSTT
T ss_pred cCCeEEEEeCCHH--------------------HHHHHHHHHHHHHHhCCCchhHhhhhhhhhhhhccccccccCccccc
Confidence 9999999998752 3889999999887653221
Q ss_pred --------cCCceEEEEEEeeecEEEEeeCCCCcceeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhhc---CCeeEEE
Q psy16053 187 --------SFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQH---FGYIFEQ 255 (351)
Q Consensus 187 --------~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~---~~~~~~~ 255 (351)
...++++|||||+|+|++|++|. +++||+||++||+|+||+++|++|+|+||+++++.+.. ..|.+++
T Consensus 120 ~~~~~~~~~~~~l~~riGIh~G~v~~G~~G~-~~~~~v~Gd~VN~AaRle~~a~~g~IlvS~~~~~~l~~~~~~~~~~~~ 198 (235)
T 1fx2_A 120 MDPEVYSRLWNGLRVRVGIHTGLCDIRHDEV-TKGYDYYGRTPNMAARTESVANGGQVLMTHAAYMSLSAEDRKQIDVTA 198 (235)
T ss_dssp SCHHHHHHHCCSCCEEEEEEEECCEEEECTT-SSSEEEESHHHHHHHHHHHTCCTTCEEEEHHHHHTSCHHHHHTCCEEE
T ss_pred cccccccccccCcEEEEEEEeeEEEEEeccc-ccceEEECHHHHHHHHHHhhcCCCEEEECHHHHHHHhhhcccCceeEe
Confidence 12469999999999999999998 67899999999999999999999999999999999964 2699999
Q ss_pred cceEEecCcCceEEEEEeecc
Q psy16053 256 RGLVSVKGKGQLMTYYLLGKS 276 (351)
Q Consensus 256 ~g~v~lKG~~~~~~~~~~~~~ 276 (351)
+|.+.+||+++|+.+|.+...
T Consensus 199 ~g~~~lkG~~~~v~vy~l~~~ 219 (235)
T 1fx2_A 199 LGDVALRGVSDPVKMYQLNTV 219 (235)
T ss_dssp EEEECCTTCSSCEEEEEECCS
T ss_pred cccEEecccCCceEEEEEecc
Confidence 999999999999999988543
No 11
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=100.00 E-value=3.7e-37 Score=274.37 Aligned_cols=171 Identities=13% Similarity=0.144 Sum_probs=154.0
Q ss_pred cccccceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEE
Q psy16053 54 EELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIK 133 (351)
Q Consensus 54 ~~~~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk 133 (351)
...+..+++++||||+||+|||.+++.++ |++++.+||+++..+++++.+| ||+++|
T Consensus 8 ~~~~~~~~~~~tvlf~Di~gft~l~~~~~----~~~~~~~l~~~~~~~~~~i~~~-------------------gG~v~k 64 (184)
T 1ybt_A 8 HHHGSAERMLATIMFTDIVGSTQHAAALG----DDRWRDLLDNHDTIVCHEIQRF-------------------GGREVN 64 (184)
T ss_dssp -----CEEEEEEEEEEEETTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHT-------------------TCEECC
T ss_pred CCCCCCceEEEEEEEEECcCcHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHc-------------------CCEEEe
Confidence 45677788999999999999999999987 8899999999999999999999 999999
Q ss_pred EeCceEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCCcc
Q psy16053 134 TIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPH 213 (351)
Q Consensus 134 ~iGD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~~~ 213 (351)
++||++|++||.| .+|++||++|++.+..++ +++|||||+|+|++|.+|..
T Consensus 65 ~~GD~~ma~f~~p--------------------~~A~~~Al~~~~~l~~~~------l~~riGi~~G~v~~g~ig~~--- 115 (184)
T 1ybt_A 65 TAGDGFVATFTSP--------------------SAAIACADDIVDAVAALG------IEVRIGIHAGEVEVRDASHG--- 115 (184)
T ss_dssp CSSSSEEEEESCH--------------------HHHHHHHHHHHHHHHTTT------CCEEEEEEEEEEEEEECSSC---
T ss_pred EeCCEEEEEeCCH--------------------HHHHHHHHHHHHHHHhcC------CcEEEEEEEeEEEEEecCCC---
Confidence 9999999999764 248999999999998754 89999999999999988874
Q ss_pred eeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcCCeeEEEcceEEecCcCceEEEEEeecc
Q psy16053 214 YDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLLGKS 276 (351)
Q Consensus 214 ~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~~~~~~~~g~v~lKG~~~~~~~~~~~~~ 276 (351)
|++||++||+|+||+++|++|+|+||+++++.+....|.++++|.+.+||+.+|+.+|.+...
T Consensus 116 ~~~~G~~Vn~AaRl~~~a~~g~IlvS~~~~~~l~~~~~~~~~~g~~~lkG~~~~~~vy~l~~~ 178 (184)
T 1ybt_A 116 TDVAGVAVHIGARVCALAGPSEVLVSSTVRDIVAGSRHRFAERGEQELKGVPGRWRLCVLMRD 178 (184)
T ss_dssp EEEESHHHHHHHHHHHHSCTTCEEEEHHHHHHTTTSSCCEEEEEEECCTTSSSCEEEEEECCC
T ss_pred ceEECcHHHHHHHHHhcCCCCEEEECHHHHHhhcccCceEEEcCCEEecCCCCcEEEEEEecC
Confidence 999999999999999999999999999999999644799999999999999999998887543
No 12
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=100.00 E-value=1e-36 Score=301.94 Aligned_cols=199 Identities=22% Similarity=0.256 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHccCC-------HHHHHHHhcCCcc-------cccccccceeeeEEEEEEecCCccccccccccccch
Q psy16053 22 ASDIRRRNEALVYNILP-------PHVASHFLGNRKR-------QHEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQG 87 (351)
Q Consensus 22 l~~~~~~~~~lL~~~lP-------~~v~~~l~~~~~~-------~~~~~~~~~~~~vtVlF~Di~gft~l~~~~~~~~~~ 87 (351)
..+++++.++||.+++| +.+++++..+... .+...+..+++++||||+||+|||.+++.++ |
T Consensus 160 ~~ee~~kse~LL~~iLP~L~~~l~~~va~~L~~~~~~~~v~~~~r~~~~~~~~~~~vTVlFaDIvgFT~ls~~~~----p 235 (407)
T 1y10_A 160 ELDIAKGSQALVSQIVPLLGPMIQDMLFMQLRHMMETEAVNAGERAAGKPLPGARQVTVAFADLVGFTQLGEVVS----A 235 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCEEEEEEEEEECSBCTTSCBCC----H
T ss_pred cHhHHHHHHHHHHHhcccccccchHHHHHHHHhcccchhhhhhhhcccccccceeeEEEEEEEccCchHHHhhCC----H
Confidence 34667889999999999 8888887554311 1111233467999999999999999999998 9
Q ss_pred HHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEeeCCCcCccCCCCCCCchhhhHHHHH
Q psy16053 88 LECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLD 167 (351)
Q Consensus 88 ~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~ 167 (351)
.+++.+||.|+..++.++. | +|+++|++||+|||+||.|.
T Consensus 236 ~evv~lLn~~~~~~~~i~~-~-------------------~g~~iKtiGDa~mavfg~p~-------------------- 275 (407)
T 1y10_A 236 EELGHLAGRLAGLARDLTA-P-------------------PVWFIKTIGDAVMLVCPDPA-------------------- 275 (407)
T ss_dssp HHHHHHHHHHHHHHHHHCC-T-------------------TCEEEEEETTEEEEEESSHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-c-------------------CcEEEEEecceEEEEECCHH--------------------
Confidence 9999999999998877665 7 99999999999999998752
Q ss_pred HHHHHHHHHHHHHHHHhhccCCceEEEEEEeeecEEEEeeCCCCcceeEeCchHHHHHHHHhcCCCCcEEeCHHHHHHhh
Q psy16053 168 VLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQ 247 (351)
Q Consensus 168 ~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~ 247 (351)
.|++||++|++.+...+ ..+.+|||||+|+|++| .||+||++||+|+||++.|++|+|+||++|++.+.
T Consensus 276 ~a~~~Al~m~~~l~~~~----~~l~iRIGIhtG~Vv~G-------vydv~GdtVN~AsRLes~a~~g~I~vS~~t~~~l~ 344 (407)
T 1y10_A 276 PLLDTVLKLVEVVDTDN----NFPRLRAGVASGMAVSR-------AGDWFGSPVNVASRVTGVARPGAVLVADSVREALG 344 (407)
T ss_dssp HHHHHHHHHHHHHHTCT----TSCCEEEEEEEEEEEEE-------TTEEEEHHHHHHHHHHHHCCTTCEEEEHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhC----CCceEEEEEEEEEEEEe-------cCccCCCHHHHHHHHHhcCCCCeEEECHHHHHHHh
Confidence 38999999999888643 45899999999999999 38999999999999999999999999999999998
Q ss_pred c----CCeeEEEcceEEecCcCceEEEEEeec
Q psy16053 248 H----FGYIFEQRGLVSVKGKGQLMTYYLLGK 275 (351)
Q Consensus 248 ~----~~~~~~~~g~v~lKG~~~~~~~~~~~~ 275 (351)
. .+|.|+++|.+.+||+..++..|.+..
T Consensus 345 ~~~~~~~f~~~~~G~v~lKGk~~~v~~y~l~~ 376 (407)
T 1y10_A 345 DAPEADGFQWSFAGPRRLRGIRGDVRLFRVRR 376 (407)
T ss_dssp CC---CCCEEEEEEEECCTTCCSCEEEEEEEC
T ss_pred cccccCceEEEEeceEEeCCCCCceEEEEEcc
Confidence 8 379999999999999977777666543
No 13
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=100.00 E-value=3.6e-35 Score=261.76 Aligned_cols=169 Identities=22% Similarity=0.279 Sum_probs=150.5
Q ss_pred ceeeeEEEEEEecCCccccccccccccchHHHHHHHHHHHHH-HHHHHcccccccccccccccccCCCccCEEEEEEeCc
Q psy16053 59 QSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISD-FDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGS 137 (351)
Q Consensus 59 ~~~~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD 137 (351)
.+++++||||+||+|||.+++.++ ++ .+..|++++.. ++.++.+| ||+++|++||
T Consensus 3 ~e~r~vtvlf~Di~gft~l~~~~~----~~-~~~~l~~~~~~~~~~~i~~~-------------------~G~v~k~~GD 58 (189)
T 3mr7_A 3 AERRLCAILAADMAGYSRLMERNE----TD-VLNRQKLYRRELIDPAIAQA-------------------GGQIVKTTGD 58 (189)
T ss_dssp CEEEEEEEEEEEECCCCGGGCCCC----HH-HHHHHHHHHHHTHHHHHHHT-------------------TCEEEEEETT
T ss_pred CcEEEEEEEEEEchhhHHHHhhCC----HH-HHHHHHHHHHHHHHHHHHHc-------------------CCEEEEEeCC
Confidence 467899999999999999999875 54 45788888887 99999999 9999999999
Q ss_pred eEEEeeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEEEeeecEEEEeeCCCCccee
Q psy16053 138 TYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQ--SFNHFVLKMGVNHGPITAGVIGARKPHYD 215 (351)
Q Consensus 138 ~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~--~~~~l~lrIGIhtG~v~~G~iG~~~~~~~ 215 (351)
++||+||. +.+|++||++|++.+..++.. ...++++|||||+|+|++| .|+
T Consensus 59 ~~~a~f~~--------------------~~~A~~~Al~i~~~l~~~~~~~~~~~~l~~riGi~~G~v~~g-------~~~ 111 (189)
T 3mr7_A 59 GMLARFDT--------------------AQAALRCALEIQQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGD 111 (189)
T ss_dssp EEEEEESS--------------------HHHHHHHHHHHHHHHHHHTTTSCGGGCCCEEEEEEEEEEEEC-------SSC
T ss_pred EEEEEeCC--------------------HHHHHHHHHHHHHHHHHHhhhcccCCceeEEEEEEEEEEEEE-------CCe
Confidence 99999963 456999999999999998854 2357999999999999999 799
Q ss_pred EeCchHHHHHHHHhcCCCCcEEeCHHHHHHhhcC-CeeEEEcceEEecCcCceEEEEEeeccCC
Q psy16053 216 IWGNTVNVASRMESTGRAGFIQVTEETTHILQHF-GYIFEQRGLVSVKGKGQLMTYYLLGKSTT 278 (351)
Q Consensus 216 v~Gd~VN~AaRLe~~a~~g~I~vSe~~~~~l~~~-~~~~~~~g~v~lKG~~~~~~~~~~~~~~~ 278 (351)
+||++||+|+||++.|++|+|+||+++++.+... .|.++++|.+.+||++.|+.+|.+.....
T Consensus 112 ~~G~~Vn~AaRl~~~a~~~~I~vs~~~~~~l~~~~~~~~~~~g~~~lkG~~~~v~vy~~~~~~~ 175 (189)
T 3mr7_A 112 IFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPFTDLGLQKVKNITRPIRVWQWVPDAD 175 (189)
T ss_dssp EESHHHHHHHHHHHHSCTTCEEEEHHHHHHHTTTCCSCCEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred EEChHHHHHHHHHhhCCCCeEEECHHHHHhhccccCceEEECCCEEeCCcCCcEEEEEEccccc
Confidence 9999999999999999999999999999999984 58999999999999999999888765443
No 14
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=96.91 E-value=0.0024 Score=46.75 Aligned_cols=39 Identities=21% Similarity=0.464 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHhc
Q psy16053 9 FIWKKEVESQKETASDIRRRNEALVYNILPPHVASHFLG 47 (351)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~lL~~~lP~~v~~~l~~ 47 (351)
-.++.++++...++..++++.++||+++||++|++.|..
T Consensus 27 E~~~~~Lee~t~~L~~EK~ktd~LL~~mLP~~VA~~Lk~ 65 (66)
T 3hls_A 27 EMLTDRLQLTLRALEDEKKKTDTLLYSVLPPSVANELRH 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhC
Confidence 556778888999999999999999999999999999864
No 15
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=94.20 E-value=0.37 Score=41.14 Aligned_cols=59 Identities=8% Similarity=0.075 Sum_probs=40.4
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...+++++||.+|..+-+..+ ...--.+|..+...+...+... +..+.++-||.|++
T Consensus 60 ~~~~l~~idid~f~~in~~~G----~~~gd~~L~~ia~~L~~~~~~~-------------------~~~~~R~~~d~F~i 116 (206)
T 3i5c_A 60 SQLSLLMIDVDYFKSYNDTFG----HVAGDEALRQVAGAIREGCSRS-------------------SDLAARYGGEEFAM 116 (206)
T ss_dssp CCEEEEEEEETTHHHHHHHHC----HHHHHHHHHHHHHHHHTTCCST-------------------TCEEEEEETTEEEE
T ss_pred CcEEEEEEECcchhHHHhccC----hhHHHHHHHHHHHHHHHhcCCC-------------------CcEEEEecCCeEEE
Confidence 458999999999999877776 3333344444444444333222 56777999999988
Q ss_pred ee
Q psy16053 142 AS 143 (351)
Q Consensus 142 ~f 143 (351)
++
T Consensus 117 l~ 118 (206)
T 3i5c_A 117 VL 118 (206)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 16
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with GG domain, structural genomics, joint center for structural GE JCSG; 1.95A {Geobacter sulfurreducens}
Probab=92.52 E-value=1.5 Score=41.38 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=59.1
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
..++++++||.+|..+-+..+ ...--.+|..+...+...+.. +..+.++-||-|++
T Consensus 212 ~~~all~idId~fk~INd~~G----~~~gD~lL~~va~~L~~~~~~--------------------~d~v~R~ggdeF~i 267 (342)
T 3ezu_A 212 SNVGIMLIDLDYFKLVGDNYG----HQTGDRILQLVAETITSHLRR--------------------SDVVGRYDGDEFVV 267 (342)
T ss_dssp CEEEEEEEEEEECCCCC---------CHHHHHHHHHHHHHHHTCCT--------------------TCEEEECSSSEEEE
T ss_pred CcEEEEEEECCcHHHHHHhhC----hHHHHHHHHHHHHHHHHHCCC--------------------CcEEEEEcCCEEEE
Confidence 568999999999999988776 333444555555555554432 56778899999988
Q ss_pred eeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeeec
Q psy16053 142 ASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGP 201 (351)
Q Consensus 142 ~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~~~~~l~lrIGIhtG~ 201 (351)
+.... ....+...+-.+++.+..... ....+.+.||+..|.
T Consensus 268 ll~~~------------------~~~~~~~~~~~l~~~l~~~~~-~~~~~~~siGva~~~ 308 (342)
T 3ezu_A 268 YLSPV------------------EPASLRTVAENLRRSIEEESA-RMVPVTASIGVAQGI 308 (342)
T ss_dssp EESSC------------------CHHHHHHHHHHHHHHHHHHTT-TTCCEEEEEEEEEEE
T ss_pred EECCC------------------CHHHHHHHHHHHHHHHhcccC-CccceEEEEEEEEEe
Confidence 87321 112344555666666655432 234578888887664
No 17
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=91.86 E-value=0.96 Score=41.74 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=52.2
Q ss_pred eeeeEEEEEEecCCccc-cccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCce
Q psy16053 60 SYAEVGVLFASMPNFSE-FYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGST 138 (351)
Q Consensus 60 ~~~~vtVlF~Di~gft~-l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~ 138 (351)
...+++|...||.++|. .....+ +.++.....+++..+.+.++++ +|...-.-||-
T Consensus 128 ~dsqIaVahiDI~d~t~~~t~~~s----~yd~~~~~l~l~~~Ll~y~~~i-------------------gG~lf~iGgdn 184 (268)
T 2qv6_A 128 VDGYVQIAHIDINNITGTLTDIVS----AYDTYLNVNKVKLALMEELLKY-------------------NALLFFIGGDN 184 (268)
T ss_dssp SSCCEEEEEEEETTHHHHTTTTSC----HHHHHHHHHHHHHHHHHHHHTT-------------------TCCCEEEETTE
T ss_pred CcCceEEEEEEecCccccccccCC----hHHHHHHHHHHHHHHHHHHHHh-------------------CCEEEEECCCE
Confidence 34689999999999998 444444 7888899999999999999998 89988888999
Q ss_pred EEEeeC
Q psy16053 139 YMAASG 144 (351)
Q Consensus 139 ~ma~fG 144 (351)
||++..
T Consensus 185 y~iftt 190 (268)
T 2qv6_A 185 FMAPSN 190 (268)
T ss_dssp EEEECT
T ss_pred EEEEeC
Confidence 999883
No 18
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=90.24 E-value=0.47 Score=40.85 Aligned_cols=79 Identities=5% Similarity=-0.032 Sum_probs=49.6
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
..++|++.||-+|..+-+..+ -..-=.+|..+-..+...+.. +..+.++-||-|++
T Consensus 32 ~~~~l~~iDiD~FK~INd~~G----h~~GD~vL~~va~~L~~~~~~--------------------~~~v~R~gGDEF~i 87 (179)
T 3tvk_A 32 LNLYLMLLDIDRFKLVNDTYG----HLIGDVVLRTLATYLASWTRD--------------------YETVYRYGGEEFII 87 (179)
T ss_dssp SEEEEEEEEETTHHHHHHHHC----HHHHHHHHHHHHHHHHHTSCT--------------------TSCEEECSSSEEEE
T ss_pred CCEEEEEEECCCCcHHHhccC----chhHHHHHHHHHHHhHhcCCc--------------------ccEEEEccCCEEEE
Confidence 358999999999998866654 111223444444444444433 56788999999998
Q ss_pred eeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q psy16053 142 ASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTG 182 (351)
Q Consensus 142 ~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~ 182 (351)
++... ....+...+..+++.+..
T Consensus 88 ll~~~------------------~~~~~~~~~~~i~~~i~~ 110 (179)
T 3tvk_A 88 IVKAA------------------NDEEACRAGVRICQLVDN 110 (179)
T ss_dssp EEEES------------------SHHHHHHHHHHHHHHHHH
T ss_pred EcCCC------------------CHHHHHHHHHHHHHHHHc
Confidence 87321 123355666677776665
No 19
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=89.35 E-value=1 Score=37.26 Aligned_cols=58 Identities=7% Similarity=0.004 Sum_probs=42.8
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...+++++||.+|..+-+..+ ....-.+|..+...+...+.. +..+.++-||.|++
T Consensus 43 ~~~~l~~i~id~f~~in~~~G----~~~gd~~L~~~a~~L~~~~~~--------------------~~~~~R~~~d~F~i 98 (177)
T 3hva_A 43 KPSTLAYIHLNGYPSLQADHG----LSGIDLLLGQLAGLMREQFGE--------------------EADLARFGDSIFAA 98 (177)
T ss_dssp CCEEEEEEEETTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHGG--------------------GCEEEECSSSEEEE
T ss_pred CCeEEEEEeCCCHHHHHHHhC----chhHHHHHHHHHHHHHHhCCC--------------------CceEEEecCCeEEE
Confidence 568999999999999877765 444445566666666665544 46678899999988
Q ss_pred ee
Q psy16053 142 AS 143 (351)
Q Consensus 142 ~f 143 (351)
++
T Consensus 99 ll 100 (177)
T 3hva_A 99 LF 100 (177)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 20
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=86.63 E-value=1.2 Score=36.91 Aligned_cols=58 Identities=5% Similarity=-0.051 Sum_probs=39.9
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...+++++||.+|..+-+..+ ....-.+|..+...+...+.. +..+.++-||.|++
T Consensus 38 ~~~~l~~i~id~f~~in~~~G----~~~gd~~L~~ia~~L~~~~~~--------------------~~~~~R~~~d~F~i 93 (177)
T 3ign_A 38 QATSLVMFDIDHFKPVNDTYG----HLAGDEVIRHTADVTRNNIRQ--------------------SDSAGRYGGEEFGI 93 (177)
T ss_dssp CCEEEEEEEETTHHHHHHHHC----HHHHHHHHHHHHHHHHTTSCT--------------------TSEEEECSSSEEEE
T ss_pred CceEEEEEEchhhHHHHHhhC----hHHHHHHHHHHHHHHHHhCCC--------------------CCEEEEecCCeEEE
Confidence 458999999999999877765 333344444444444443332 45678899999988
Q ss_pred ee
Q psy16053 142 AS 143 (351)
Q Consensus 142 ~f 143 (351)
++
T Consensus 94 ll 95 (177)
T 3ign_A 94 IL 95 (177)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 21
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=84.34 E-value=3.3 Score=33.79 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=43.3
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...+++++||.+|..+-+..+ ....-.+|..+...+...+.. +..+.++-||.|++
T Consensus 29 ~~~~l~~i~id~f~~in~~~G----~~~gd~~L~~~a~~L~~~~~~--------------------~~~~~R~~~d~F~i 84 (171)
T 3icl_A 29 NPVVLLFLDVDNFKSINDSLG----HLVGDRLLRATAERIRTAVRD--------------------GDTVARIGGDKFTI 84 (171)
T ss_dssp SCCEEEEEEETTHHHHHHHHC----HHHHHHHHHHHHHHHHHHSCT--------------------TCEEEEETTTEEEE
T ss_pred CcEEEEEEEChHhhHHHHHhC----hHHHHHHHHHHHHHHHHhcCC--------------------CCEEEEecCCEEEE
Confidence 458999999999999887776 444455556666666555543 56788999999988
Q ss_pred eeC
Q psy16053 142 ASG 144 (351)
Q Consensus 142 ~fG 144 (351)
+..
T Consensus 85 ll~ 87 (171)
T 3icl_A 85 LLN 87 (171)
T ss_dssp EES
T ss_pred Eec
Confidence 873
No 22
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=84.11 E-value=2.1 Score=35.63 Aligned_cols=58 Identities=3% Similarity=-0.040 Sum_probs=43.8
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...+++++||.+|..+-+..+ ....-.+|..+...+...+.. +..+.++-||.|++
T Consensus 35 ~~~~l~~idid~f~~in~~~G----~~~gd~lL~~ia~~L~~~~~~--------------------~~~~~R~~~d~F~i 90 (178)
T 3mtk_A 35 IDTYLIFLEVRDLEKLNVTYG----YDLVDELIIHISKRIKDIAGE--------------------GNKAFKIGFDRFAI 90 (178)
T ss_dssp TTEEEEEEEETTHHHHHHHHC----HHHHHHHHHHHHHHHHHHHCS--------------------SSEEEEEETTEEEE
T ss_pred CceEEEEEEhhHhhHHHHHhC----hHHHHHHHHHHHHHHHHhcCC--------------------CCEEEEecCCEEEE
Confidence 458999999999999877776 444555666666666666543 56788999999988
Q ss_pred ee
Q psy16053 142 AS 143 (351)
Q Consensus 142 ~f 143 (351)
++
T Consensus 91 l~ 92 (178)
T 3mtk_A 91 IC 92 (178)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 23
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=82.60 E-value=3.2 Score=33.87 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=38.7
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
..++++++||.+|..+-+..+ ...--.+|..+...+...+.. +..+.++-||.|++
T Consensus 41 ~~~~l~~idid~f~~in~~~G----~~~gd~~L~~ia~~L~~~~~~--------------------~~~~~R~~~deF~i 96 (167)
T 3qyy_A 41 WPFVLFVLDMDNLKPINDRFG----HLAGDRVLVRLVESAYGWLGA--------------------QDWIGRWGGDEFLI 96 (167)
T ss_dssp CCCEEEEEEESSHHHHHHHHC----HHHHHHHHHHHHHHHTTTCCT--------------------TCEEEEEETTEEEE
T ss_pred CcEEEEEEechhhhHHHhhcC----cHHHHHHHHHHHHHHHHhcCC--------------------CCEEEeecCceEEE
Confidence 458999999999999877765 333333333333333332221 56788999999988
Q ss_pred ee
Q psy16053 142 AS 143 (351)
Q Consensus 142 ~f 143 (351)
++
T Consensus 97 l~ 98 (167)
T 3qyy_A 97 GV 98 (167)
T ss_dssp EE
T ss_pred Ec
Confidence 87
No 24
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=79.47 E-value=4.1 Score=37.73 Aligned_cols=60 Identities=8% Similarity=0.065 Sum_probs=36.9
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...+++++||.+|..+-+..+ ...--.+|..+...+...+... +..+.++-||.|++
T Consensus 201 ~~~~l~~idid~fk~ind~~G----~~~gD~~L~~va~~l~~~~~~~-------------------~~~~~R~ggdeF~i 257 (358)
T 3bre_A 201 SQLSLLMIDVDYFKSYNDTFG----HVAGDEALRQVAGAIREGCSRS-------------------SDLAARYGGEEFAM 257 (358)
T ss_dssp CCEEEEEEEETTHHHHHHHHC----HHHHHHHHHHHHHHHHTTCCST-------------------TCEEEEEETTEEEE
T ss_pred CcEEEEEEEchhhhHHHHhcC----hHHHHHHHHHHHHHHHHhcCCc-------------------CcEEEEecCCeEEE
Confidence 458999999999987755543 2222233344333333322222 56677899999988
Q ss_pred eeC
Q psy16053 142 ASG 144 (351)
Q Consensus 142 ~fG 144 (351)
++.
T Consensus 258 ll~ 260 (358)
T 3bre_A 258 VLP 260 (358)
T ss_dssp EEE
T ss_pred EeC
Confidence 873
No 25
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=74.75 E-value=6.3 Score=37.99 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=41.8
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
..++++++||.+|..+-...+ ...--.+|..+...+...+.. ...+.++-||-|++
T Consensus 318 ~~~~l~~idid~fk~iNd~~G----h~~gD~~L~~~a~~l~~~~~~--------------------~d~~~R~ggdeF~i 373 (459)
T 1w25_A 318 DPVSALLIDIDFFKKINDTFG----HDIGDEVLREFALRLASNVRA--------------------IDLPCRYGGEEFVV 373 (459)
T ss_dssp CCCEEEEEEETTHHHHHHHSC----HHHHHHHHHHHHHHHHHTSCT--------------------TSEEEECSSSEEEE
T ss_pred CcEEEEEEEchhhchhhhccC----hhhHHHHHHHHHHHHHHhCCC--------------------cCEEEEEcCceEEE
Confidence 468999999999999887776 333334555555555554433 46788999999999
Q ss_pred eeC
Q psy16053 142 ASG 144 (351)
Q Consensus 142 ~fG 144 (351)
+..
T Consensus 374 l~~ 376 (459)
T 1w25_A 374 IMP 376 (459)
T ss_dssp EET
T ss_pred EeC
Confidence 873
No 26
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Probab=70.98 E-value=18 Score=34.58 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=60.3
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...++++.||.+|..+-+..+ ...--.+|..+...+...+..+ ...+..+.++-||.|++
T Consensus 47 ~~~~l~~idid~fk~iNd~~G----~~~gD~lL~~va~~L~~~~~~~----------------~~~~~~v~R~ggdeF~i 106 (430)
T 3pjx_A 47 SSGYLLLLRVKDLAGLNQRLG----GQRTDELLKAVGEQLSRECAKY----------------PETQNLVTRIRGGEFAV 106 (430)
T ss_dssp SCEEEEEEEETTHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHTS----------------GGGTTCEEEEETTEEEE
T ss_pred CceEEEEEEchhhhHHHHhcC----hHHHHHHHHHHHHHHHHHHHhc----------------CCcCceEEEecCceEEE
Confidence 457899999999999877776 4444556666666666665542 00035678899999988
Q ss_pred eeCCCcCccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEEEee
Q psy16053 142 ASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQ--SFNHFVLKMGVNH 199 (351)
Q Consensus 142 ~fG~p~~~~~~~~p~~~~~~~~~~a~~Av~~Al~m~~~l~~~~~~--~~~~l~lrIGIht 199 (351)
+.... ....+...+-.+...+...... ....+.+.||+..
T Consensus 107 ll~~~------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~siGi~~ 148 (430)
T 3pjx_A 107 LAPGM------------------TREEALQLAQSLDSALSSLYATGATDVAAVASIGLAP 148 (430)
T ss_dssp EEETC------------------CHHHHHHHHHHHHHHHHHHHHTTSCSCTTCEEEEEEE
T ss_pred EeCCC------------------CHHHHHHHHHHHHHHHhhhhhcCCeeeeEEEEEEEEe
Confidence 87321 1122444555666666553322 2234556666653
No 27
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=56.56 E-value=17 Score=29.88 Aligned_cols=58 Identities=10% Similarity=-0.031 Sum_probs=37.5
Q ss_pred eeEEEEEEec---CCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCce
Q psy16053 62 AEVGVLFASM---PNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGST 138 (351)
Q Consensus 62 ~~vtVlF~Di---~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~ 138 (351)
...+++++|| .+|..+-+..+ ...--.+|..+...+...+. ...+.++-||.
T Consensus 26 ~~~~l~~i~i~~id~f~~in~~~G----~~~gD~~L~~ia~~L~~~~~---------------------~~~v~R~~~de 80 (176)
T 3hvw_A 26 GALTVIAADLLPLALLNTIIRTLG----YPFSNDLMLEARDRIRAELP---------------------DFTLYKISPTR 80 (176)
T ss_dssp SEEEEEEEECSCHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHCT---------------------TSCEEEEETTE
T ss_pred CCceEEEEEecCHHHHHHHHHHhC----cHHHHHHHHHHHHHHHHHCC---------------------CCeEEEecCCE
Confidence 4578899999 88888776665 33333444444444444332 24567888999
Q ss_pred EEEeeC
Q psy16053 139 YMAASG 144 (351)
Q Consensus 139 ~ma~fG 144 (351)
|+++..
T Consensus 81 F~ill~ 86 (176)
T 3hvw_A 81 FGLLLP 86 (176)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 988873
No 28
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=46.92 E-value=76 Score=28.95 Aligned_cols=59 Identities=7% Similarity=0.139 Sum_probs=46.5
Q ss_pred EEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEeeC
Q psy16053 66 VLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASG 144 (351)
Q Consensus 66 VlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~fG 144 (351)
|.-+.|.||-.|++.+.+. .-..+..+-.++++.+...+..+ ||++.-+-=|-++|+-+
T Consensus 4 it~i~i~~Y~~WT~t~g~~-RE~~lQ~lQs~l~~~l~~~~~~~-------------------~g~~f~~R~D~~ia~tn 62 (268)
T 2qv6_A 4 ITVIQIDNYGPWTVTPNPR-RESDLQALQSRLYADLNLMFGAH-------------------KGLVFYTRFDNLIAITN 62 (268)
T ss_dssp EEEEEETTHHHHHHSSSCC-CHHHHHHHHHHHHHHHHHHHHTT-------------------TCEEECTTSSEEEEECT
T ss_pred EEEEEEcCcccccCCCCch-hHHHHHHHHHHHHHHHHHHHHhc-------------------CCEEeecccceEEEEeC
Confidence 3446778999999998853 22346666678888899999888 99999888899998883
No 29
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=33.78 E-value=8.7 Score=36.99 Aligned_cols=58 Identities=7% Similarity=0.039 Sum_probs=0.0
Q ss_pred eeEEEEEEecCCccccccccccccchHHHHHHHHHHHHHHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEE
Q psy16053 62 AEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMA 141 (351)
Q Consensus 62 ~~vtVlF~Di~gft~l~~~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma 141 (351)
...++++.||.+|..+-+..+. ..--.+|..+...+...+.. +..+.++-||.|++
T Consensus 43 ~~~~l~~idid~fk~iNd~~G~----~~gD~lL~~va~~L~~~~~~--------------------~~~v~R~ggdeF~i 98 (437)
T 3hvb_A 43 KPSTLAYIHLNGYPSLQADHGL----SGIDLLLGQLAGLMREQFGE--------------------EADLARFGDSIFAA 98 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEcCcHHHHHHhhCc----hhHHHHHHHHHHHHHHhCCC--------------------CceEEEecCCEEEE
Confidence 5689999999999998777652 22223444444444443332 45667888999888
Q ss_pred ee
Q psy16053 142 AS 143 (351)
Q Consensus 142 ~f 143 (351)
++
T Consensus 99 ll 100 (437)
T 3hvb_A 99 LF 100 (437)
T ss_dssp --
T ss_pred Ee
Confidence 87
No 30
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=32.75 E-value=1.4e+02 Score=30.95 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=57.6
Q ss_pred HHHHHHHHHH-HHHHHHcccccccccccccccccCCCccCEEEEEEeCceEEEeeCCCcCccCCCCCCCchhhhHHHHHH
Q psy16053 90 CLRFLNEVIS-DFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDV 168 (351)
Q Consensus 90 ~~~~Ln~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~gg~~vk~iGD~~ma~fG~p~~~~~~~~p~~~~~~~~~~a~~ 168 (351)
+-+.|+.|+. .+..++ ++ +|+++-.-||-++++.. ...
T Consensus 467 LSRaL~~Ff~~~V~~Iv-k~-------------------~G~vIYaGGDDfL~llP---------------------~d~ 505 (693)
T 3ung_C 467 ISQALANFSIREVRSVV-KD-------------------EGLLIYAGGDDVLAILP---------------------VDK 505 (693)
T ss_dssp HHHHHHHHHHTHHHHHH-TT-------------------SSEEEEECSSEEEEEEE---------------------HHH
T ss_pred HHHHHHHHHHHHHHHHH-hh-------------------CcEEEEEcCceEEEEee---------------------HHH
Confidence 4566777775 455566 46 89999999999999992 234
Q ss_pred HHHHHHHHHHHHHHH-hh-ccCCceEEEEEEeeecEEEEeeCCCCcceeEeCchHHHHHHHHh-cCCC
Q psy16053 169 LIEFAMEMKKALTGI-NE-QSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMES-TGRA 233 (351)
Q Consensus 169 Av~~Al~m~~~l~~~-~~-~~~~~l~lrIGIhtG~v~~G~iG~~~~~~~v~Gd~VN~AaRLe~-~a~~ 233 (351)
|+.+|.++++.+... .. .....+.+.+||... - .. .-+......|..++. .|+.
T Consensus 506 AlelAe~LRe~F~~~~t~~~~~~~ITiSaGVAi~----~---~k----~Pl~~~le~AdeALy~~AK~ 562 (693)
T 3ung_C 506 ALEVAYKIRKEFGKSFENGSLLPGWKLSAGILIV----H---YK----HPLYDALEKARDLLNNKAKN 562 (693)
T ss_dssp HHHHHHHHHHHHHTC---------CCEEEEEEEE----E---TT----SCHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHhccccCCCCceEEEEEEEc----c---CC----CCHHHHHHHHHHHHHHHhcC
Confidence 888888898887763 21 111234455544432 2 11 234567888888888 7764
Done!