RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16053
(351 letters)
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 197 bits (502), Expect = 2e-62
Identities = 85/220 (38%), Positives = 118/220 (53%), Gaps = 37/220 (16%)
Query: 56 LYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSR 115
+Y+QSY V +LFA + F+ E +R LN++ + FD LL+
Sbjct: 1 VYAQSYDNVTILFADIVGFTALSSR----HSPEELVRLLNDLYTRFDELLDKHG------ 50
Query: 116 PIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAME 175
V K+KTIG YMAASGL H L E A++
Sbjct: 51 -------------VYKVKTIGDAYMAASGLPEP-------------SPAHAQTLAEMALD 84
Query: 176 MKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGF 235
M +A+ +N SF +++G++ GP+ AGVIGAR+P YD+WG+TVN+ASRMESTG G
Sbjct: 85 MLEAIKSVNIHSFEGLRVRVGIHTGPVVAGVIGARRPRYDVWGDTVNLASRMESTGVPGK 144
Query: 236 IQVTEETTHIL-QHFGYIFEQRGLVSVKGKGQLMTYYLLG 274
I V+EET +L + F +RG V VKGKG++ TY+L G
Sbjct: 145 IHVSEETYRLLKTREQFEFTERGEVEVKGKGKMETYFLNG 184
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 153 bits (389), Expect = 1e-45
Identities = 64/213 (30%), Positives = 97/213 (45%), Gaps = 38/213 (17%)
Query: 63 EVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLE 122
EV VLFA + F+ E + LNE S FD ++E
Sbjct: 1 EVTVLFADIVGFTALSERLG----PEELVELLNEYFSAFDEIIE---------------- 40
Query: 123 LPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTG 182
+ KTIG MA GL H + + A+EM++AL
Sbjct: 41 --RH-GGTVDKTIGDAVMAVFGLP-------------GAHEDHAERAVRAALEMQEALAE 84
Query: 183 INEQSFNHFVLKM--GVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTE 240
+N + L++ G++ GP+ AGV+G+ +P Y + G+TVN+A+R+ES + G I V+E
Sbjct: 85 LNAEREGGPPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSE 144
Query: 241 ETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLL 273
T +L G+ FE+ G V +KGK + Y L
Sbjct: 145 ATYELLGDAGFEFEELGEVELKGKSGPVRVYRL 177
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 152 bits (387), Expect = 4e-45
Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 40/232 (17%)
Query: 24 DIRRRNEALVYNILPPHVASHFLGNRKRQHEELYSQSYAEVGVLFASMPNFSEFYCEDDV 83
+ +++ + L+ +LP VA KR + ++SY V +LF+ + F+
Sbjct: 1 EEKKKTDRLLDQLLPASVAEQL----KRGGSPVPAESYDNVTILFSDIVGFTSLCST--- 53
Query: 84 NKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAAS 143
+ + LN++ S FD +++ K+KTIG YM AS
Sbjct: 54 -STPEQVVNLLNDLYSRFDQIIDR-------------------HGGYKVKTIGDAYMVAS 93
Query: 144 GLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFV-LKMGVNHGPI 202
GL P E H +++ + A++M + L + Q + +++G++ GP+
Sbjct: 94 GL------------PEEALVDHAELIADEALDMVEELKTVLVQHREEGLRVRIGIHTGPV 141
Query: 203 TAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHFGYIFE 254
AGV+G R P Y ++G+TVN+ASRMES G G IQV+EET +L G F
Sbjct: 142 VAGVVGIRMPRYCLFGDTVNLASRMESAGDPGQIQVSEETYSLLARRGGQFV 193
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be divided
into two major groups; the mononucleotidyl cyclases
(MNC's) and the diguanylate cyclases (DGC's). The
MNC's, which include the adenylate cyclases (AC's) and
the guanylate cyclases (GC's), have a conserved cyclase
homology domain (CHD), while the DGC's have a conserved
GGDEF domain, named after a conserved motif within this
subgroup. Their products, cyclic guanylyl and adenylyl
nucleotides, are second messengers that play important
roles in eukaryotic signal transduction and prokaryotic
sensory pathways.
Length = 133
Score = 111 bits (280), Expect = 3e-30
Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 42/175 (24%)
Query: 63 EVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLE 122
V +LFA + F+ E LNE+ FD+L+ R
Sbjct: 1 PVTILFADIVGFTSLA----DALGPDEGDELLNELAGRFDSLI--------RRS------ 42
Query: 123 LPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTG 182
+KIKTIG +M SGLD H + FA +M++A++
Sbjct: 43 -----GDLKIKTIGDEFMVVSGLD------------------HPAAAVAFAEDMREAVSA 79
Query: 183 INEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQ 237
+N+ N +++G++ GP+ GVIG+R P YD+WG VN+ASRMES +AG +
Sbjct: 80 LNQSEGNPVRVRIGIHTGPVVVGVIGSR-PQYDVWGALVNLASRMESQAKAGQVL 133
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 66.0 bits (161), Expect = 1e-12
Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 53/252 (21%)
Query: 26 RRRNEALVYNILPPHVASHFLGNRKRQHEELYSQSYAEVGVLFASMPNFSEFYCEDDVNK 85
R++ ++ L V L V +LFA + +E
Sbjct: 18 GLRSDLVLRLYLARVVGR-LLARGGAGDRR--------VTLLFADIVGSTELSESLG--- 65
Query: 86 QGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGL 145
L E+++ + F + + +K IG ++A G
Sbjct: 66 -----DEALVELLNLY--------FDAVAEVVARH-------GGRVVKFIGDGFLAVFGR 105
Query: 146 DPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAG 205
V ++ + ++ L + +S +++G++ G + G
Sbjct: 106 PSPLED--------AVAC-----ALDLQLALRNPLARLRRESLR---VRIGIHTGEVVVG 149
Query: 206 VIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKG 265
G Y + G+ VN A+R+ES + G + ++E T +++ +F G +KG
Sbjct: 150 NTGG----YTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRDLVDLFSGLGSHRLKGLA 205
Query: 266 Q-LMTYYLLGKS 276
+ + Y L +S
Sbjct: 206 RPVRVYQLCHRS 217
>gnl|CDD|219526 pfam07701, HNOBA, Heme NO binding associated. The HNOBA domain is
found associated with the HNOB domain and pfam00211 in
soluble cyclases and signalling proteins. The HNOB
domain is predicted to function as a heme-dependent
sensor for gaseous ligands, and transduce diverse
downstream signals, in both bacteria and animals.
Length = 209
Score = 30.7 bits (70), Expect = 0.87
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 1 MEKASKVLFIWKKEVESQKETASDIRRRNEALVYNILPPHVA 42
+EK L +E+E +K ++ + L+Y++LP VA
Sbjct: 172 LEKLKDKLEEAHRELEEEK-------KKTDDLLYSMLPKSVA 206
>gnl|CDD|215072 PLN00141, PLN00141, Tic62-NAD(P)-related group II protein;
Provisional.
Length = 251
Score = 28.7 bits (64), Expect = 4.8
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 15/60 (25%)
Query: 278 TGANY----PSGL---PPFENSVMEPLKEVDEEKEEEIHEGQVNLDMDETNETEGLLKKE 330
+G NY P GL PP N VMEP E+ ++EG ++ D E LL E
Sbjct: 171 SGINYTIVRPGGLTNDPPTGNIVMEP--------EDTLYEGSISRDQVAEVAVEALLCPE 222
>gnl|CDD|131500 TIGR02447, yiiD_Cterm, thioesterase domain, putative. This family
consists of a broadly distributed uncharacterized domain
found often as a standalone protein. The member from
Shewanella oneidensis, PDB|1T82_A (Forouhar, et al.,
unpublished) is described from crystallography work as a
putative thioesterase. About half of the members of this
family are fused to an Acetyltransf_1 domain
(pfam00583). The function of this protein is unknown.
Length = 138
Score = 27.7 bits (62), Expect = 4.8
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 91 LRFLNEVISDFDALLELPKFKEWSRPIKSL 120
+R+L V D A E P + W + +L
Sbjct: 77 IRYLAPVTGDPVANCEAPDLESWEAFLATL 106
>gnl|CDD|220687 pfam10316, 7TM_GPCR_Srbc, Serpentine type 7TM GPCR chemoreceptor
Srbc. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srbc is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 272
Score = 28.3 bits (64), Expect = 6.4
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
Query: 8 LFIWKKEVESQKETASDIRRRNE-AL-------VYNILPPHVASHF 45
LFIW K S+ ++ ++ + N AL +++ LP ++++F
Sbjct: 193 LFIWNKF--SKTQSNKELSKANRLALLDSAIVFLFDFLPSFISNYF 236
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 28.7 bits (64), Expect = 6.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 218 GNTVNVASRMESTGRAGFIQVTEETTHILQH 248
G T N A RM++ G I V+E +L+
Sbjct: 407 GTTPNAAVRMQAQAEPGQILVSEAARKLLRR 437
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 27.7 bits (62), Expect = 8.4
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 272 LLGKSTTGANYPSGLPPFENSVMEPLKEVDEEKEEEIHEGQVN 314
++G ST+G N S EV + + +EI E VN
Sbjct: 202 MIGVSTSGGN------QIVESFKRGSSEVVDLEVDEIRETAVN 238
>gnl|CDD|233015 TIGR00544, lgt, prolipoprotein diacylglyceryl transferase. The
conversion of lipoprotein precursors into lipoproteins
consists of three steps. First, the enzyme described by
this model transfers a diacylglyceryl moiety from
phosphatidylglycerol to the side chain of a Cys that
will become the new N-terminus. Second, the signal
peptide is removed by signal peptidase II. Finally, the
free amino group of the new N-terminal Cys is acylated
by apolipoprotein N-acyltransferase [Protein fate,
Protein modification and repair].
Length = 278
Score = 27.7 bits (62), Expect = 8.7
Identities = 24/121 (19%), Positives = 36/121 (29%), Gaps = 36/121 (29%)
Query: 140 MAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKAL-------TGINEQSFNHFV 192
M +S L P++ PI + W L + + A+ GI + F V
Sbjct: 1 MNSSILYPSWDPIAFQLGPIAIHWYGLIYALGIIFAILMAVRRLQRDNRGIQKDEFEDLV 60
Query: 193 LKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHFGYI 252
V+GA I G R G++ + QH I
Sbjct: 61 F----------WAVLGA------ILG------------ARLGYVLF-YWKGYYAQHPLNI 91
Query: 253 F 253
F
Sbjct: 92 F 92
>gnl|CDD|182031 PRK09694, PRK09694, helicase Cas3; Provisional.
Length = 878
Score = 27.9 bits (62), Expect = 9.9
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 300 VDEEKEEEIHEGQVNLDMDETNETEGLLKK 329
V E +++ +GQV +DE + E L
Sbjct: 794 VQTEHGKQLLDGQVLEQLDEEQQYEALALN 823
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.387
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,017,091
Number of extensions: 1760756
Number of successful extensions: 1591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1572
Number of HSP's successfully gapped: 21
Length of query: 351
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 253
Effective length of database: 6,590,910
Effective search space: 1667500230
Effective search space used: 1667500230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)