RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16053
(351 letters)
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 309 bits (794), Expect = e-106
Identities = 120/233 (51%), Positives = 155/233 (66%), Gaps = 18/233 (7%)
Query: 52 QHEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFK 111
++EELY QSY V V+FAS+P+F EFY E DVNK+GLECLR LNE+I+DFD LL PKF
Sbjct: 3 KNEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFS 62
Query: 112 EWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIE 171
V KIKTIGSTYMAA+GL + + + E ++ H+ ++E
Sbjct: 63 G----------------VEKIKTIGSTYMAATGLSAI--PSQEHAQEPERQYMHIGTMVE 104
Query: 172 FAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTG 231
FA + L IN+ SFN F L++G+NHGP+ AGVIGA+KP YDIWGNTVNVASRM+STG
Sbjct: 105 FAYALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTG 164
Query: 232 RAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLLGKSTTGANYPS 284
IQVTEET+ ILQ GY RG+++VKGKG L TY++ + + + +
Sbjct: 165 VLDKIQVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFVNTEMSRSLSQSN 217
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 201 bits (513), Expect = 6e-64
Identities = 65/249 (26%), Positives = 105/249 (42%), Gaps = 35/249 (14%)
Query: 52 QHEELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFK 111
+ ++ Y V +LF+ + F+ F + + ++ + LN++ + FD L + K
Sbjct: 1 HKRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNP 60
Query: 112 EWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIE 171
V K++T+G YM SGL P E H +
Sbjct: 61 F----------------VYKVETVGDKYMTVSGL------------P-EPCIHHARSICH 91
Query: 172 FAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTG 231
A++M + + + +G++ G + GVIG R P Y ++GNTVN+ SR E+TG
Sbjct: 92 LALDMMEIAGQVQVDG-ESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTG 150
Query: 232 RAGFIQVTEETTHILQHF-----GYIFEQRGLVSVKGKGQLMTYYLLGKSTTGANYPSGL 286
G I V+E T L + E RG VS+KGK + M + L + TG
Sbjct: 151 EKGKINVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRKNTGTEETKQD 210
Query: 287 PPFENSVME 295
EN +
Sbjct: 211 DDAENLYFQ 219
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 184 bits (470), Expect = 1e-57
Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 37/220 (16%)
Query: 56 LYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSR 115
+ + Y E VLFA + F+E + + +RFL+ + S FD L++
Sbjct: 3 IIADKYDEASVLFADIVGFTER-AS---STAPADLVRFLDRLYSAFDELVD--------- 49
Query: 116 PIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAME 175
+ + KI+ G +YM SG+ P R H L +FA++
Sbjct: 50 ---------QHG-LEKIEVSGDSYMVVSGV------------PRP-RPDHTQALADFALD 86
Query: 176 MKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGF 235
M + + N L++G+ GP+ AGV+G+R+ Y +WG+ VNVASRMEST G
Sbjct: 87 MTNVAAQLKDPRGNPVPLRVGLATGPVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQ 146
Query: 236 IQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLLGK 275
IQV +E L+ ++ +RG ++VKGKG + T+YL+G+
Sbjct: 147 IQVPDEVYERLKD-DFVLRERGHINVKGKGVMRTWYLIGR 185
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 164 bits (417), Expect = 7e-50
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 36/221 (16%)
Query: 59 QSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIK 118
Q + E VLF+ + F+E LE L+E+ FDA +E
Sbjct: 5 QEHPEATVLFSDIVGFTEI-ASR---SSPLEVXSLLDELYQRFDAAIE------------ 48
Query: 119 SLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKK 178
++ ++ K++TIG YM + + H DVL+EFA+ M +
Sbjct: 49 ------EYPQLYKVETIGDAYMVVCNV------------TVPCD-DHADVLLEFALRMHE 89
Query: 179 ALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQV 238
+ + +++G++ GP+ AGV+G + P + ++G+TVN ASRMES G AG I +
Sbjct: 90 EASRVASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHI 149
Query: 239 TEETTHILQHFG-YIFEQRGLVSVKGKGQLMTYYLLGKSTT 278
+E L+ + +RG ++VKGKG + TY L T
Sbjct: 150 SEACYCCLRSKERFEIRERGNITVKGKGTMRTYLLSPLERT 190
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 162 bits (413), Expect = 6e-49
Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 44/241 (18%)
Query: 40 HVASHFLGNRKRQHE-----ELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFL 94
H A + + E ++Y Q + V +LFA + F+ + E + L
Sbjct: 6 HHAMEMKADINAKQEDMMFHKIYIQKHDNVSILFADIEGFTSLASQCTA----QELVMTL 61
Query: 95 NEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIK 154
NE+ + FD L + ++IK +G Y SGL
Sbjct: 62 NELFARFDKLAA------------------ENH-CLRIKILGDCYYCVSGL--------- 93
Query: 155 PSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHY 214
P R H +E M+M +A++ + E + + +++G++ G + GV+G RK +
Sbjct: 94 ---PEA-RADHAHCCVEMGMDMIEAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQF 149
Query: 215 DIWGNTVNVASRMESTGRAGFIQVTEETTHILQHFGYIFEQ--RGLVSVKGKGQLMTYYL 272
D+W N V +A+ ME+ G+AG I +T+ T L Y E G + K + +L
Sbjct: 150 DVWSNDVTLANHMEAGGKAGRIHITKATLSYLNG-DYEVEPGCGGERNAYLKEHSIETFL 208
Query: 273 L 273
+
Sbjct: 209 I 209
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 161 bits (410), Expect = 2e-48
Identities = 46/257 (17%), Positives = 95/257 (36%), Gaps = 45/257 (17%)
Query: 54 EELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEW 113
+ + ++ ++ V +LF+ + F+ C L+ + LN + + FD
Sbjct: 5 QVVQAKKFSNVTMLFSDIVGFTA-ICS---QCSPLQVITMLNALYTRFDQQCG------- 53
Query: 114 SRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFA 173
+ +V K++TIG Y A GL E H + A
Sbjct: 54 -----------EL-DVYKVETIGDAYCVAGGL------------HKESD-THAVQIALMA 88
Query: 174 MEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRA 233
++M + + +++G++ G + AGV+G + P Y ++GN V +A++ ES
Sbjct: 89 LKMMELSDEVMSPHGEPIKMRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVP 148
Query: 234 GFIQVTEETTHILQHFG-YIFEQRGLVSVKGKGQ--------LMTYYLLGKSTTGANYPS 284
I V+ T +L+ ++F R + + Y G ++
Sbjct: 149 RKINVSPTTYRLLKDCPGFVFTPRSREELPPNFPSEIPGICHFLDAYQQGTNSKPCFQKK 208
Query: 285 GLPPFENSVMEPLKEVD 301
+ + + +D
Sbjct: 209 DVEDGNANFLGKASGID 225
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 115 bits (289), Expect = 3e-29
Identities = 39/277 (14%), Positives = 74/277 (26%), Gaps = 64/277 (23%)
Query: 16 ESQKETASDIRRRNEALVYNILPPHVASHFLGNRKRQHEELYSQSYAEVGVLFASMPNFS 75
+ I+ + +++ N + +V V FA + F+
Sbjct: 173 QIVPLLGPMIQDMLFMQLRHMMETEAV-----NAGERAAGKPLPGARQVTVAFADLVGFT 227
Query: 76 EFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIKTI 135
+ E + L V IKTI
Sbjct: 228 QLGEVVSAE----ELGHLAGRLAGLARDLTA--------------------PPVWFIKTI 263
Query: 136 GSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSFNHFVLKM 195
G M DP + ++ +++ + + N L+
Sbjct: 264 GDAVMLVCP------------DPAPL--------LDTVLKLVEVVDTDNN----FPRLRA 299
Query: 196 GVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAGFIQVTEETTHILQHF----GY 251
GV G + D +G+ VNVASR+ R G + V + L G+
Sbjct: 300 GVASGMAVSRA-------GDWFGSPVNVASRVTGVARPGAVLVADSVREALGDAPEADGF 352
Query: 252 IFEQRGLVSVKGKGQLMTYYLLGKSTTGANYPSGLPP 288
+ G ++G + + + + T
Sbjct: 353 QWSFAGPRRLRGIRGDVRLFRVRRGATRTGSGGAAQD 389
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 92.2 bits (229), Expect = 4e-22
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 20/162 (12%)
Query: 131 KIKTIGSTYMAASG----------------LDPNFVATIKPSDPIEVRWKHLDVLIEFAM 174
++KT+G ++M AS L ++ E + + E+
Sbjct: 56 EVKTVGDSFMIASKSPFAAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTP 115
Query: 175 EMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMESTGRAG 234
+ + +N +++G++ G K YD +G T N+A+R ES G
Sbjct: 116 PTAHMDPEVYSRLWNGLRVRVGIHTGLCDIRHDEVTK-GYDYYGRTPNMAARTESVANGG 174
Query: 235 FIQVTEETTHILQH---FGYIFEQRGLVSVKGKGQLMTYYLL 273
+ +T L G V+++G + Y L
Sbjct: 175 QVLMTHAAYMSLSAEDRKQIDVTALGDVALRGVSDPVKMYQL 216
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 78.5 bits (194), Expect = 2e-17
Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 170 IEFAMEMKKALTGINEQSFNHFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRMES 229
I A ++ A+ + + +++G++ G + D+ G V++ +R+ +
Sbjct: 81 IACADDIVDAVAALGIE------VRIGIHAGEVEVRDASHG---TDVAGVAVHIGARVCA 131
Query: 230 TGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLL 273
+ V+ I+ + F +RG +KG +L
Sbjct: 132 LAGPSEVLVSSTVRDIVAGSRHRFAERGEQELKGVPGRWRLCVL 175
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 72.2 bits (178), Expect = 4e-15
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 173 AMEMKKALTGINEQ----SFNHFVLKMGVNHGPITAGVIGARK-PHYDIWGNTVNVASRM 227
+EM+ AL +N+Q + +G+N G + G IG+ K Y + G VN+ R+
Sbjct: 88 GVEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGSEKRTKYGVVGAQVNLTYRI 147
Query: 228 ESTGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQ-LMTYYLLG 274
ES G I ++ T V KG ++ + + G
Sbjct: 148 ESYTTGGQIFISSTTLEAAGDR-VHVNGNRTVQPKGVKDPVVIWDVAG 194
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 68.0 bits (167), Expect = 1e-13
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 173 AMEMKKALTGINEQSFNH-----FVLKMGVNHGPITAGVIGA-RKPHYDIWGNTVNVASR 226
+ M+K + + +Q ++MG+N G T G GA + Y I G VN+ASR
Sbjct: 85 GIAMRKHMKVLRQQWRAQGITKPLEIRMGINTGYCTVGNFGADTRMDYTIIGREVNLASR 144
Query: 227 MESTGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYY-LLGK 275
+ES AG I ++ ET +++ + +G ++VKG + + Y ++
Sbjct: 145 LESASEAGEILISHETYSLIKD-VIMCRDKGQIAVKGFSRPVQIYQVVDS 193
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 67.7 bits (166), Expect = 1e-13
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 170 IEFAMEMKKALTGINEQSFN--HFVLKMGVNHGPITAGVIGARKPHYDIWGNTVNVASRM 227
+ A+E+++A+ E + ++G+N G I DI+G+ VNVA+R+
Sbjct: 71 LRCALEIQQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGDIFGDAVNVAARL 123
Query: 228 ESTGRAGFIQVTEETTHILQ-HFGYIFEQRGLVSVKGKGQLMTYY 271
E+ G I V++ I Q F GL VK + + +
Sbjct: 124 EAISEPGAICVSDIVHQITQDRVSEPFTDLGLQKVKNITRPIRVW 168
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 63.8 bits (156), Expect = 4e-12
Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 13/112 (11%)
Query: 173 AMEMKKALTGINEQ----------SFNHFVLKMGVNHGPITAGVIGARK-PHYDIWGNTV 221
A +M AL +N+ + G++ G G+ G+++ + G +V
Sbjct: 103 ARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGLFGSQERSDFTAIGPSV 162
Query: 222 NVASRMESTGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYYLL 273
N+A+R++ I V+ + +R + +KG + + ++
Sbjct: 163 NIAARLQEATAPNSIMVSAMVAQYVPDE--EIIKREFLELKGIDEPVMTCVI 212
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 6e-04
Identities = 60/387 (15%), Positives = 109/387 (28%), Gaps = 155/387 (40%)
Query: 38 PPHVASHFLGNRKRQHEELYSQSYAEVGVLFASMPNF-SEFYCEDDVN-------KQGLE 89
P + FLG E + + VL + F + + +D++ ++
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQ--VLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 90 CLRFLNEVISD-FDALLELPKFKEWSRPIKS-LLELPK-------------------FKE 128
L E+I + A + + + + S L F+E
Sbjct: 115 TLVKTKELIKNYITARIMAK--RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 129 VIKIKTIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALT-GINEQ- 186
++ + TY V + I+ + L LI ++ +K T G+N
Sbjct: 173 ---LRDLYQTY-------HVLVGDL-----IKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 187 -------------------SFN--------HFVL---KMGVNHG---PITAGVIGARKPH 213
S H+V+ +G G G G +
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ-- 275
Query: 214 YDIWGNTVNVASRM--ESTGRAGFIQVTEETTHILQHFGYIFEQRGLVSVKGKGQLMTYY 271
+ V + E+ F + +L F +I G+ +
Sbjct: 276 -GL------VTAVAIAETDSWESFFVSVRKAITVL--F-FI----GV-----RCYE---- 312
Query: 272 LLGKSTTGANYP-SGLPPFENSVMEPLKEVDEEKEEEIHEGQVNLDMDETNETEGL---- 326
YP + LPP S++E D EG+
Sbjct: 313 ---------AYPNTSLPP---SILE----------------------DSLENNEGVPSPM 338
Query: 327 -----LKKEDVQNGV-IVNPTVPSEEQ 347
L +E VQ+ V N +P+ +Q
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Score = 39.6 bits (92), Expect = 0.002
Identities = 40/250 (16%), Positives = 76/250 (30%), Gaps = 96/250 (38%)
Query: 1 ME--KASKVLF-IWKKEVESQKET----ASDIRRRNEALVYNILPPHVASHFLGNRKRQH 53
M+ K SK +W + K+T DI N P ++ HF G + ++
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN--------PVNLTIHFGGEKGKRI 1684
Query: 54 EELYSQSYAEVGVLFASMPNFSEFYCEDDVNKQGLECLRFLNEVISDF-----DALLELP 108
E YS ++F ++ D + + + +NE + + LL
Sbjct: 1685 RENYS------AMIFETIV---------DGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 109 KF----------------KEW-SRPIK------SLLE----------LPKFKEVIKI--- 132
+F K P SL E + + ++++
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS-IESLVEVVFY 1788
Query: 133 --KTI----------GSTY-MAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKA 179
T+ S Y M A ++P VA + ++ V+
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIA--INPGRVAASFSQEALQ------YVVERVGKRTGWL 1840
Query: 180 LTGINEQSFN 189
+ +N +N
Sbjct: 1841 VEIVN---YN 1847
Score = 34.6 bits (79), Expect = 0.049
Identities = 46/268 (17%), Positives = 84/268 (31%), Gaps = 76/268 (28%)
Query: 113 WS-RPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATI-----------KPSDPIE 160
+S RP+ L + V+ + T +++ AS L F + +P+ P E
Sbjct: 4 YSTRPL--TLSHGSLEHVLLVPT--ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 161 VRWK---HLDVLIE------FAMEMKKALTGINEQSF---N--H-FVLKMGVNHGPITAG 205
+ K ++ L+E F + LT E + N H K+ +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-ENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 206 VIGARKPHYDIWGNTVNVASR-MESTGRAGFIQ-VTEETTHILQHFGYIFEQRGLVSVKG 263
K + +A R + + + V E ++ FG G
Sbjct: 119 TKELIKNYI----TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG------------G 162
Query: 264 KGQLMTYY--LLGKSTTGANYPSGLPPFENSVMEPLKEV--DEEKEEEIHEGQVNLDMDE 319
+G Y+ L T Y + E L E+ E++
Sbjct: 163 QGNTDDYFEELRDLYQT---YHVLVGDLIKFSAETLSELIRTTLDAEKVF---------- 209
Query: 320 TNETEGLLKKEDVQNGVIVNP-TVPSEE 346
T+GL ++ + NP P ++
Sbjct: 210 ---TQGL----NILE-WLENPSNTPDKD 229
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain,
signaling helix, S-helix, CGMP biosynthesis, cytoplasm,
GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Length = 66
Score = 29.7 bits (67), Expect = 0.21
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 12 KKEVESQKETASDIRRRNEALVYNILPPHVA 42
++ D +++ + L+Y++LPP VA
Sbjct: 30 TDRLQLTLRALEDEKKKTDTLLYSVLPPSVA 60
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.22
Identities = 23/175 (13%), Positives = 55/175 (31%), Gaps = 51/175 (29%)
Query: 25 IRRRNEALVY---NILPP--------HVASHFLGNRKRQHEELYSQSYAEVGVLFASMPN 73
+ N + +++PP H+ H + L+ + +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL----------D 499
Query: 74 FSEFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVIKIK 133
F + E + N S + L +L +K + PK++ ++
Sbjct: 500 FR--FLEQKIRHDSTAW----NASGSILNTLQQLKFYKPYICDND-----PKYERLVN-- 546
Query: 134 TIGSTYMAASGLDPNFVATIKPSDPIEVRWKHLDVLIEFAMEMKKALTGINEQSF 188
+ +F+ I+ + + K+ D L+ A+ + I E++
Sbjct: 547 ----AIL-------DFLPKIEEN---LICSKYTD-LLRIALMAED--EAIFEEAH 584
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 31.7 bits (72), Expect = 0.42
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 105 LELPKFKEWSRPIKSLLELPKFKEVIKIKTIGSTYMAASGLDPNFVATIK-----PSDPI 159
L + IK + + K +++ IK IG ++A + LD VAT++ P
Sbjct: 193 LSFVGEGCFDDEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRYGKPF 252
Query: 160 EVRWKHLDVLIEFA 173
V + ++ + ++
Sbjct: 253 AVMMRDVEEVKKYC 266
>3lxz_A Glutathione S-transferase family protein; structural genomics,
PP0183, PSI-2, protein structure initiative; 1.76A
{Pseudomonas putida} PDB: 3pr8_A*
Length = 229
Score = 28.0 bits (63), Expect = 4.0
Identities = 6/43 (13%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 88 LECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKEVI 130
++ + + + + D L + P+ K ++ + E P ++
Sbjct: 163 VDLANAVGKKVLNIDFLADFPQAKAL---LQLMGENPHMPRIL 202
>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold,
metal transport; 1.70A {Drosophila melanogaster}
Length = 260
Score = 27.0 bits (59), Expect = 9.3
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 76 EFYCEDDVNKQGLECLRFLNEVISDFDALLELPKFKEWSRPIKSLLELPKFKE 128
C D L+ +R + DF+ L + + + +L F +
Sbjct: 170 TMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLTALWRY---MYHMYQLDAFTQ 219
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.387
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,386,699
Number of extensions: 328303
Number of successful extensions: 599
Number of sequences better than 10.0: 1
Number of HSP's gapped: 562
Number of HSP's successfully gapped: 35
Length of query: 351
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 257
Effective length of database: 4,077,219
Effective search space: 1047845283
Effective search space used: 1047845283
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.7 bits)