Query psy16054
Match_columns 563
No_of_seqs 512 out of 3123
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:41:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qbu_A Putative uncharacterize 100.0 1.4E-43 4.7E-48 368.3 16.5 241 233-498 75-326 (326)
2 3s6o_A Polysaccharide deacetyl 100.0 2.7E-40 9.1E-45 342.5 15.7 232 220-497 75-312 (321)
3 3rxz_A Polysaccharide deacetyl 100.0 1.4E-38 4.9E-43 326.8 18.0 220 233-494 63-284 (300)
4 3cl6_A PUUE allantoinase; URIC 100.0 4.8E-35 1.6E-39 301.7 16.8 223 219-490 69-297 (308)
5 2cc0_A Acetyl-xylan esterase; 99.9 2E-24 6.9E-29 207.8 15.7 117 217-349 3-121 (195)
6 1ny1_A Probable polysaccharide 99.9 8.1E-24 2.8E-28 210.2 19.8 189 217-488 41-231 (240)
7 2vyo_A ECU11_0510, chitooligos 99.9 1.5E-24 5E-29 217.4 13.4 192 216-493 23-223 (254)
8 2w3z_A Putative deacetylase; P 99.9 4E-24 1.4E-28 220.0 16.2 202 213-483 101-310 (311)
9 2y8u_A Chitin deacetylase; hyd 99.9 1.9E-23 6.4E-28 206.3 19.7 118 217-350 31-150 (230)
10 2iw0_A Chitin deacetylase; hyd 99.9 5E-23 1.7E-27 206.2 19.1 118 217-350 40-164 (254)
11 2j13_A Polysaccharide deacetyl 99.9 1.9E-23 6.3E-28 208.5 15.9 119 217-349 53-173 (247)
12 2c71_A Glycoside hydrolase, fa 99.9 1.8E-23 6.2E-28 204.4 14.4 184 218-488 4-190 (216)
13 2c1i_A Peptidoglycan glcnac de 99.9 5E-22 1.7E-26 212.2 18.7 183 217-489 234-418 (431)
14 3hft_A WBMS, polysaccharide de 99.8 1E-21 3.5E-26 190.3 6.0 139 219-396 37-177 (257)
15 3vus_A Poly-beta-1,6-N-acetyl- 99.8 1.3E-18 4.5E-23 175.3 11.9 125 218-354 65-234 (268)
16 1n7d_A LDL receptor, low-densi 99.7 9.3E-18 3.2E-22 190.8 16.4 157 18-180 30-213 (699)
17 1n7d_A LDL receptor, low-densi 99.7 6.3E-17 2.2E-21 183.9 14.8 164 46-220 25-240 (699)
18 4f9d_A Poly-beta-1,6-N-acetyl- 99.7 1.9E-16 6.7E-21 175.1 10.6 125 218-354 69-238 (618)
19 2fyj_A Low-density lipoprotein 99.6 2.1E-16 7.1E-21 130.3 7.0 73 96-178 7-81 (82)
20 4hd5_A Polysaccharide deacetyl 99.6 4E-16 1.4E-20 161.4 10.7 122 217-353 196-324 (360)
21 2fcw_B LDL receptor, low-densi 99.6 1.3E-16 4.3E-21 130.8 3.5 73 96-178 5-79 (80)
22 3m0c_C LDL receptor, low-densi 99.6 9.1E-17 3.1E-21 184.5 2.7 191 20-216 50-295 (791)
23 3m0c_C LDL receptor, low-densi 99.6 1.1E-16 3.9E-21 183.6 0.0 130 63-216 26-166 (791)
24 2fcw_B LDL receptor, low-densi 99.3 5E-13 1.7E-17 109.3 2.8 65 142-219 2-66 (80)
25 2fyj_A Low-density lipoprotein 99.3 2E-12 6.9E-17 106.3 5.5 66 142-219 4-70 (82)
26 1ajj_A LR5, low-density lipopr 99.1 3.7E-11 1.3E-15 83.4 3.6 36 143-178 2-37 (37)
27 2m0p_A Low-density lipoprotein 99.0 6.3E-11 2.1E-15 88.0 2.7 40 141-180 5-44 (52)
28 1cr8_A Protein (LOW density li 99.0 1.5E-10 5.1E-15 82.7 4.2 38 142-179 3-41 (42)
29 1d2l_A Lipoprotein receptor re 99.0 1.2E-10 4.1E-15 84.3 3.2 38 141-178 4-41 (45)
30 2jm4_A Relaxin receptor 1; LDL 99.0 1.6E-10 5.4E-15 83.0 3.4 38 141-178 5-43 (43)
31 3a7q_B Low-density lipoprotein 99.0 1.4E-10 4.7E-15 83.7 3.1 37 142-178 7-43 (44)
32 3dpr_E LDL-receptor class A 3; 99.0 3E-10 1E-14 79.7 3.4 36 143-178 1-38 (39)
33 1k7b_A Subgroup A ROUS sarcoma 99.0 2.5E-10 8.5E-15 83.6 3.0 37 142-178 6-47 (47)
34 2xrc_A Human complement factor 98.9 9.8E-10 3.4E-14 121.7 8.0 71 97-179 207-277 (565)
35 1j8e_A Low-density lipoprotein 98.9 4.4E-10 1.5E-14 81.0 2.7 36 142-177 4-39 (44)
36 2i1p_A Low-density lipoprotein 98.9 4.4E-10 1.5E-14 82.6 2.6 38 142-179 6-44 (48)
37 2knx_A Prolow-density lipoprot 98.9 6.6E-10 2.3E-14 82.2 3.2 37 142-178 6-43 (50)
38 2kny_A LRP-1, linker, APO-E; l 98.9 5.7E-10 1.9E-14 91.0 2.1 65 141-214 7-74 (80)
39 1jrf_A TVA LDL-A module, subgr 98.9 6.2E-10 2.1E-14 81.5 1.8 38 142-179 4-46 (47)
40 2gtl_O Extracellular hemoglobi 98.8 2E-10 6.8E-15 110.2 -1.8 52 121-180 41-94 (215)
41 2xrc_A Human complement factor 98.4 8.8E-08 3E-12 106.0 3.8 95 97-209 174-268 (565)
42 2gtl_M Hemoglobin linker chain 98.3 2.2E-07 7.4E-12 89.2 3.2 39 141-179 52-94 (217)
43 2gtl_N Extracellular hemoglobi 98.3 2.1E-07 7.1E-12 88.6 2.8 76 141-232 51-130 (220)
44 3ojy_B Complement component C8 98.2 8E-07 2.7E-11 97.5 6.2 68 122-196 45-115 (537)
45 3ojy_A Complement component C8 98.1 1.7E-06 5.7E-11 95.2 6.3 70 122-194 43-115 (554)
46 1dqc_A Tachycitin; disulfide-r 98.1 8.4E-07 2.9E-11 71.2 2.6 55 25-91 8-62 (74)
47 2kny_A LRP-1, linker, APO-E; l 98.0 9.3E-07 3.2E-11 71.9 0.7 63 96-164 11-76 (80)
48 1k1x_A 4-alpha-glucanotransfer 97.7 0.00038 1.3E-08 78.0 15.2 199 234-488 31-257 (659)
49 2gtl_O Extracellular hemoglobi 97.7 1.8E-06 6.1E-11 82.8 -3.1 64 95-179 56-121 (215)
50 1ajj_A LR5, low-density lipopr 97.7 1.3E-05 4.6E-10 55.1 2.1 33 96-132 4-36 (37)
51 3dpr_E LDL-receptor class A 3; 97.7 3.4E-05 1.1E-09 53.8 3.7 33 96-132 3-37 (39)
52 1cr8_A Protein (LOW density li 97.6 3E-05 1E-09 54.9 3.4 34 96-133 6-40 (42)
53 3a7q_B Low-density lipoprotein 97.5 3.1E-05 1.1E-09 55.5 2.2 33 96-132 10-42 (44)
54 2i1p_A Low-density lipoprotein 97.5 2.1E-05 7.3E-10 57.4 1.3 35 95-133 8-43 (48)
55 2jm4_A Relaxin receptor 1; LDL 97.5 3.6E-05 1.2E-09 54.8 2.5 33 96-132 9-42 (43)
56 2m0p_A Low-density lipoprotein 97.5 2.2E-05 7.4E-10 58.2 1.2 35 96-134 9-43 (52)
57 1d2l_A Lipoprotein receptor re 97.5 3.5E-05 1.2E-09 55.4 2.1 33 96-132 8-40 (45)
58 1k7b_A Subgroup A ROUS sarcoma 97.5 4.8E-05 1.6E-09 55.3 2.3 33 96-132 9-46 (47)
59 2knx_A Prolow-density lipoprot 97.3 8.6E-05 2.9E-09 54.6 1.8 33 96-132 9-42 (50)
60 1j8e_A Low-density lipoprotein 97.3 7.2E-05 2.4E-09 53.5 1.2 33 96-132 7-39 (44)
61 1jrf_A TVA LDL-A module, subgr 97.2 8.6E-05 2.9E-09 53.9 1.6 34 96-133 7-45 (47)
62 3t5o_A Complement component C6 97.2 0.00021 7E-09 83.4 5.2 37 142-179 118-154 (913)
63 2b5d_X Alpha-amylase; (beta/al 97.2 0.018 6.3E-07 62.7 20.1 80 267-354 126-208 (528)
64 3n98_A Alpha-amylase, GH57 fam 97.0 0.02 7E-07 62.3 17.5 79 267-352 125-219 (562)
65 2gtl_N Extracellular hemoglobi 97.0 0.00027 9.3E-09 67.3 2.5 52 96-157 55-113 (220)
66 2nly_A BH1492 protein, diverge 96.7 0.011 3.9E-07 57.9 11.5 206 220-488 5-226 (245)
67 1wb0_A Chitinase 1, chitotrios 96.4 0.00056 1.9E-08 73.3 0.0 50 26-84 396-445 (445)
68 2gtl_M Hemoglobin linker chain 96.3 0.00088 3E-08 64.2 1.1 61 96-176 56-120 (217)
69 4dwe_A Uncharacterized protein 95.7 0.34 1.2E-05 49.9 16.7 179 264-496 176-363 (480)
70 3ojy_B Complement component C8 95.6 0.0068 2.3E-07 66.3 4.2 46 97-157 69-115 (537)
71 2qv5_A AGR_C_5032P, uncharacte 94.9 0.1 3.6E-06 51.5 9.7 181 252-488 54-249 (261)
72 3p0b_A TT1467 protein; glycosi 94.3 0.08 2.7E-06 57.4 7.8 80 267-353 146-243 (540)
73 3ojy_A Complement component C8 94.1 0.026 8.7E-07 61.9 3.6 35 96-134 67-102 (554)
74 1dqc_A Tachycitin; disulfide-r 91.0 0.089 3E-06 41.5 1.9 33 96-129 35-67 (74)
75 3bvx_A Alpha-mannosidase 2; fa 84.5 9.7 0.00033 44.8 14.5 81 266-354 146-228 (1045)
76 3t5o_A Complement component C6 84.1 0.45 1.5E-05 55.3 2.9 34 97-134 121-154 (913)
77 1o7d_A Lysosomal alpha-mannosi 79.6 6.8 0.00023 39.2 9.3 83 266-354 87-171 (298)
78 3lvt_A Glycosyl hydrolase, fam 57.1 21 0.00072 41.2 8.2 79 265-353 71-151 (899)
79 2wyh_A Alpha-mannosidase; hydr 55.2 29 0.00098 40.1 8.9 79 265-354 90-171 (923)
80 3lm3_A Uncharacterized protein 55.1 1.7E+02 0.0059 29.2 15.9 99 237-350 59-169 (449)
81 1xg8_A Hypothetical protein SA 44.3 38 0.0013 28.2 5.4 55 417-475 21-76 (111)
82 2i5i_A UPF0249 protein EF_3048 41.1 83 0.0028 30.4 8.5 118 221-349 7-155 (263)
83 3rzi_A Probable 3-deoxy-D-arab 29.0 91 0.0031 32.6 6.6 86 228-317 308-403 (462)
No 1
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}
Probab=100.00 E-value=1.4e-43 Score=368.27 Aligned_cols=241 Identities=14% Similarity=0.156 Sum_probs=199.4
Q ss_pred CchHHHHHhccCCCCCCCCCCceEEEEeccCC--CHHHHHHHHHcCCeecccCCCCCCCcCCCCCCCHHHHHHHHHHHHH
Q psy16054 233 NSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT--NYASVQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRL 310 (563)
Q Consensus 233 ~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~--~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~~~s~~~~~~Ei~~~~~ 310 (563)
.+..+++||++ +++||||||++..+ ++++|++|+++|||||+||++|..+. .++.+++++||.++++
T Consensus 75 ~~~rlL~lL~~-------~~v~aTfFv~g~~~~~~p~~v~~i~~~GhEIg~H~~~H~~~~----~~s~~~~~~ei~~~~~ 143 (326)
T 3qbu_A 75 GIPRLLKLFKK-------YHLPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYSHENPI----AMSTKQEEDVLLKSVE 143 (326)
T ss_dssp HHHHHHHHHHH-------TTCCCEEECCHHHHHHCHHHHHHHHTTTCEEEBCCSSCCCGG----GSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-------cCCCEEEEEEhHHhhhCHHHHHHHHHcCCEEEeCCCCCcChh----hCCHHHHHHHHHHHHH
Confidence 35567888874 78999999999875 67999999999999999999999764 6899999999999999
Q ss_pred HHHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeEEeecCCCCCC-CCcccee------ccCCCCCCcCCCCCCCC
Q psy16054 311 IIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITASLGR-VPIWPYT------LYFRMPHKCNGNAHNCP 383 (563)
Q Consensus 311 ~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~YDsS~~~~~~~-~p~wPyt------ld~~~p~~c~~~~~pcp 383 (563)
+|++++|. .++|||+|+++.+. +++++|+++||.||||+..+ + .|||+++ +||..++.| ++.|++
T Consensus 144 ~l~~~~G~---~p~~fr~P~g~~~~-~~~~~l~e~G~~ydss~~~~--D~~Py~~~~~~~~~~~d~~~~~~~--w~~P~~ 215 (326)
T 3qbu_A 144 LIKDLTGK---APTGYVAPWWEFSN-ITNELLLKHGFKYDHSLMHN--DFTPYYVRVGDSWSKIDYSLEAKD--WMKPLI 215 (326)
T ss_dssp HHHHHHSS---CCCEECCGGGCCSS-HHHHHHHTTTCCEECCCCSC--SSSCEEEEECCBCCCCCTTSCGGG--TCCCCB
T ss_pred HHHHHHCC---CCcEEECCCCCCCH-HHHHHHHHcCCEEEeeccCC--CCCCeeeecCCccccccccccchh--hccccc
Confidence 99999885 48999999999994 79999999999999999864 5 7898887 677777666 467786
Q ss_pred CC-CCCcEEEeccccccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHcc-CCcceEEeeccccccCchhH
Q psy16054 384 SK-SHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFST-NRAPLGLHFHASWLKSKKEF 461 (563)
Q Consensus 384 ~~-~~~lweiP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~-nrap~~l~lH~~~l~g~p~r 461 (563)
.. ..++||||++ |+.+|.|.|.... .+ .......++++++++|+++|+++|++ ++++++|++| +++.|+|.|
T Consensus 216 ~g~~~~l~eiP~~-~~~~D~p~~~f~~-~~---~~~~g~~~~~~~~~~l~~~Fd~~y~~~~~~~~~i~lH-~~~~g~p~r 289 (326)
T 3qbu_A 216 RGVETNLVEIPAN-WYLDDLPPMMFIK-KS---PNSFGFVSPRDIGQMWIDQFDWVYREMDYAVFSMTIH-PDVSARPQV 289 (326)
T ss_dssp CCEEEEEEECCCC-GGGBSHHHHCCCT-TC---TTCCCCSCHHHHHHHHHHHHHHHHHHCSEEEEEEEEC-HHHHTSHHH
T ss_pred CCCCCCeEEEcCc-cccCcchhhhccc-cc---cCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEC-ccccCCHHH
Confidence 54 3469999998 4544545443210 00 01123478999999999999999995 5789999999 557889999
Q ss_pred HHHHHHHHHHHHcCCCeEEEeHHHHHHHhhCCchhhh
Q psy16054 462 KDELIKFIEEMLDRNDVYFVTMLQVIQWMQNPTELTS 498 (563)
Q Consensus 462 ~~al~~fl~~i~~~~dVwfvT~~ei~~w~~~p~~~~~ 498 (563)
+++|++||++|++++||||||.+|||+||+++.|.++
T Consensus 290 ~~~le~fl~~i~~~~~Vw~~t~~eia~~~~~~~p~~~ 326 (326)
T 3qbu_A 290 LLMHEKIIEHINKHEGVRWVTFNEIADDFLKRNPRKK 326 (326)
T ss_dssp HHHHHHHHHHHTTSTTEEECCHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHhCCCEEEEcHHHHHHHHHhhCCCCC
Confidence 9999999999999999999999999999998888653
No 2
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6
Probab=100.00 E-value=2.7e-40 Score=342.50 Aligned_cols=232 Identities=16% Similarity=0.197 Sum_probs=192.3
Q ss_pred ceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccCC--CHHHHHHHHHcCCeecccCCCCCCCcCCCCCCC
Q psy16054 220 MITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT--NYASVQELHRKGHEISVFSLTHKDDPKYWSGGS 297 (563)
Q Consensus 220 ~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~--~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~~~s 297 (563)
-+.+|||||+.. .+..+++||++ +++||||||++... ++++|++|+++|||||+||++|..+. .++
T Consensus 75 ~~~s~fddG~~~-~~~rll~lL~~-------~~v~aTfFv~g~~~~~~p~~v~~i~~~GhEIg~H~~~H~~~~----~ls 142 (321)
T 3s6o_A 75 SMESIYEYGSRA-GVWRILREFDK-------RGLPLTVFGVGMAIERHPELARAFVELGHEIACHGWRWIHYQ----DMT 142 (321)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHH-------HTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSCSCCT----TCC
T ss_pred cceeEeccCcHH-hHHHHHHHHHH-------cCCCEEEEEEHHHhhhCHHHHHHHHHcCCEEeeCCccccccc----cCC
Confidence 478999999975 47788899975 78999999999875 77999999999999999999998763 689
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHHHcC-CeEEeecCCCCCCCCccceeccCCCCCCcC
Q psy16054 298 YDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQF-FVYDASITASLGRVPIWPYTLYFRMPHKCN 376 (563)
Q Consensus 298 ~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~G-f~YDsS~~~~~~~~p~wPytld~~~p~~c~ 376 (563)
.+++++||.+++++|++++|. .++||| ++..+ .+++++|+++| |+||||+..+ +.|||+++++..
T Consensus 143 ~~~~~~ei~~~~~~l~~~~G~---~p~g~r--~g~~s-~~t~~ll~e~G~f~Ydss~~~d--d~Py~~~~~~~~------ 208 (321)
T 3s6o_A 143 PEREAEHMRLGMEAIERVTGV---RPLGWY--TGRDS-PNTHRLVAEYGGFLYDSDHYGD--DLPFWMDVEVSG------ 208 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC---CCCEEC--CSSCC-TTHHHHHHHHCCCSEECCCCSC--SSCEEEEEECTT------
T ss_pred HHHHHHHHHHHHHHHHHHhCC---CcccEE--CCCCC-HHHHHHHHHcCCeEEEEeccCC--CCCcceeccCcC------
Confidence 999999999999999999885 489999 45777 46999999999 9999999864 578999886521
Q ss_pred CCCCCCCCCCCCcEEEeccccccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHccC-Ccc--eEEeeccc
Q psy16054 377 GNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTN-RAP--LGLHFHAS 453 (563)
Q Consensus 377 ~~~~pcp~~~~~lweiP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~n-rap--~~l~lH~~ 453 (563)
++..++||||++ |+.+|.. | .+ .....++++++++|+++|+++|+++ ++| |+|++| +
T Consensus 209 -------g~~~~l~~iP~t-~~~~D~~-~-------~~---~~g~~~~~~~~~~l~~~Fd~~y~eg~~ap~~~~i~lH-~ 268 (321)
T 3s6o_A 209 -------GASVPQLIVPYT-LDANDMR-F-------AT---PQGFNTADHFFHYLRDAFDVLYEEGDEAPKMMSIGMH-C 268 (321)
T ss_dssp -------SCEEEEEECCCC-SSSBGGG-G-------SS---SSCCCSHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEE-T
T ss_pred -------CCCCCEEEEeEe-eeeCCee-e-------ec---CCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeC-h
Confidence 112369999986 4433321 1 01 1124679999999999999999765 665 899999 5
Q ss_pred cccCchhHHHHHHHHHHHHHcCCCeEEEeHHHHHHHhhCCchhh
Q psy16054 454 WLKSKKEFKDELIKFIEEMLDRNDVYFVTMLQVIQWMQNPTELT 497 (563)
Q Consensus 454 ~l~g~p~r~~al~~fl~~i~~~~dVwfvT~~ei~~w~~~p~~~~ 497 (563)
++.|+|+|+.+|++||++|++++||||||.+||++||+++.|..
T Consensus 269 ~~~g~p~r~~~le~fL~~i~~~~~Vw~~t~~eia~~~~~~~p~~ 312 (321)
T 3s6o_A 269 RLLGRPGRFRALQRFLDHIERHDRVWVARRVEIARHWREHHPYR 312 (321)
T ss_dssp TTTTSHHHHHHHHHHHHHHHTCSSEEECCHHHHHHHHHHHSCC-
T ss_pred HHcCCHHHHHHHHHHHHHHHhCCCEEEEcHHHHHHHHHhhCCCC
Confidence 67889999999999999999999999999999999997666643
No 3
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.4e-38 Score=326.81 Aligned_cols=220 Identities=21% Similarity=0.271 Sum_probs=181.6
Q ss_pred CchHHHHHhccCCCCCCCCCCceEEEEeccCC--CHHHHHHHHHcCCeecccCCCCCCCcCCCCCCCHHHHHHHHHHHHH
Q psy16054 233 NSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT--NYASVQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRL 310 (563)
Q Consensus 233 ~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~--~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~~~s~~~~~~Ei~~~~~ 310 (563)
.+..+++||++ +++||||||++... ++++|++|+++|||||+||++|..+ ..++.+++++||.++++
T Consensus 63 ~~~rll~ll~~-------~~v~aTfFv~g~~~~~~p~~v~~~~~~GhEIg~H~~~H~~~----~~~s~~~~~~ei~~~~~ 131 (300)
T 3rxz_A 63 GVPRLLGILDE-------FNVPGTFFVPGYTAHRHPEPIRSIARAGHEIAHHGYLHESL----VGADEDTERKILTRGIE 131 (300)
T ss_dssp HHHHHHHHHHH-------TTCCEEEEECHHHHHHSHHHHHHHHHTTCEEEECCSSCCCC----TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------cCCCEEEEEEHHHHhhCHHHHHHHHHcCCEEEecCCCCccc----ccCCHHHHHHHHHHHHH
Confidence 45567888874 78999999999874 6699999999999999999999986 46899999999999999
Q ss_pred HHHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeEEeecCCCCCCCCccceeccCCCCCCcCCCCCCCCCCCCCcE
Q psy16054 311 IIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAHNCPSKSHPTW 390 (563)
Q Consensus 311 ~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~YDsS~~~~~~~~p~wPytld~~~p~~c~~~~~pcp~~~~~lw 390 (563)
+|++++|. .++|||+|++..+. +++++|+++||.||||+..+ + +||.++.+ ..++|
T Consensus 132 ~l~~~~G~---~p~~fr~P~g~~~~-~~~~~l~e~G~~ydss~~~~--~---~Py~~~~~---------------~~~l~ 187 (300)
T 3rxz_A 132 ALEEVAGV---HPVGYRAPMWEMNW-HTPKLLAEFGFLYDSTLMDS--D---HPYELAVG---------------DGSLV 187 (300)
T ss_dssp HHHHHHSC---CCCEECCGGGCCCT-THHHHHHHTTCSEECCCCSC--S---SCEEBCCT---------------TSCCE
T ss_pred HHHHHhCC---CCcEEECCCCCCCH-HHHHHHHHcCCEEEeeccCC--C---CceEeecC---------------CCCeE
Confidence 99999885 48999999999995 79999999999999999863 3 45543311 13699
Q ss_pred EEeccccccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHccCCcceEEeeccccccCchhHHHHHHHHHH
Q psy16054 391 EMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNRAPLGLHFHASWLKSKKEFKDELIKFIE 470 (563)
Q Consensus 391 eiP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~nrap~~l~lH~~~l~g~p~r~~al~~fl~ 470 (563)
|||++ ++..|.+.|... ++...+....++++++++|+++|+++|++ +++++|++| +++.|+|.++++|++||+
T Consensus 188 ~iP~~-~~~~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fd~~~~~-g~~~~i~~H-~~~~g~p~~~~~l~~~l~ 260 (300)
T 3rxz_A 188 ELPVS-WALDDWQQYCFV----PDFSGTGLIETPAKAIELWRAELNAMRDI-GGAWVLTNH-PFLSGRPGRAAALREFIA 260 (300)
T ss_dssp ECCCC-GGGBSHHHHCCB----TTTBCSSCCCCHHHHHHHHHHHHHHHHHH-TCEEEEEEC-HHHHTSHHHHHHHHHHHH
T ss_pred EEeee-eecCCcHhhhcc----cccccCCCCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEC-hhhcCCHHHHHHHHHHHH
Confidence 99997 443333222110 11233334578999999999999999987 679999999 678899999999999999
Q ss_pred HHHcCCCeEEEeHHHHHHHhhCCc
Q psy16054 471 EMLDRNDVYFVTMLQVIQWMQNPT 494 (563)
Q Consensus 471 ~i~~~~dVwfvT~~ei~~w~~~p~ 494 (563)
++++++||||||.+||++||+++.
T Consensus 261 ~~~~~~~V~~~t~~eia~~~~~~~ 284 (300)
T 3rxz_A 261 EVCAMDDVWVAGMSQIAEHVRAQK 284 (300)
T ss_dssp HHHTCTTEEECCHHHHHHHHHHTC
T ss_pred HHHhCCCEEEEcHHHHHHHHHhhc
Confidence 999999999999999999997764
No 4
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=100.00 E-value=4.8e-35 Score=301.69 Aligned_cols=223 Identities=17% Similarity=0.260 Sum_probs=182.9
Q ss_pred CceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccCC--CHHHHHHHHHcCCeecccCCCCCCCcCCCCCC
Q psy16054 219 QMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT--NYASVQELHRKGHEISVFSLTHKDDPKYWSGG 296 (563)
Q Consensus 219 q~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~--~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~~~ 296 (563)
..|+||||||+.. .+..+++||++ +++||||||++... ++++|++|+++|||||+||++|..+. .+
T Consensus 69 ~~~~ltfDdG~~~-~~~~ll~iL~~-------~~v~aTfFv~g~~~~~~p~~v~~i~~~GheIg~Ht~~H~~~~----~~ 136 (308)
T 3cl6_A 69 MSMESLYEYGSRA-GVWRILKLFKA-------FDIPLTIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWIDYQ----YM 136 (308)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHH-------TTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSSSCCT----TC
T ss_pred cceeEEEecCchh-hHHHHHHHHHH-------cCCCEEEEeEHHHHHHCHHHHHHHHHcCCEEEeCCCCCcccc----cC
Confidence 3588999999986 57788899975 78999999999874 77999999999999999999999874 58
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHHHcC-CeEEeecCCCCCCCCccceeccCCCCCCc
Q psy16054 297 SYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQF-FVYDASITASLGRVPIWPYTLYFRMPHKC 375 (563)
Q Consensus 297 s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~G-f~YDsS~~~~~~~~p~wPytld~~~p~~c 375 (563)
+.+++++||.+++++|++++|. .++|||+| ..+ .+++++|+++| |.||||+..+ +.|||+.+.
T Consensus 137 s~~~~~~ei~~~~~~l~~~~G~---~p~g~r~~--~~~-~~~~~~l~~~G~~~y~ss~~~~--d~Py~~~~~-------- 200 (308)
T 3cl6_A 137 DEAQEREHMLEAIRILTELTGE---RPLGWYTG--RTG-PNTRRLVMEEGGFLYDCDTYDD--DLPYWEPNN-------- 200 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSS---CCSEECCS--SCC-TTHHHHHHHHCCCSEECCCCCC--SSCEECSCC--------
T ss_pred CHHHHHHHHHHHHHHHHHHhCC---CcceEECC--CCC-HHHHHHHHHCCCceEEeccCCC--CCceeeecC--------
Confidence 9999999999999999999885 48999987 556 46999999999 9999999864 456666431
Q ss_pred CCCCCCCCCCCCCcEEEeccccccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHccCC-cc--eEEeecc
Q psy16054 376 NGNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNR-AP--LGLHFHA 452 (563)
Q Consensus 376 ~~~~~pcp~~~~~lweiP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~nr-ap--~~l~lH~ 452 (563)
+...++|+||++ ++..|.. | + + .....++++++++++++|+++|+.++ +| ++|.+|
T Consensus 201 --------~~~~~~~~iP~~-~~~~D~~-~------~-~---~~~~~~~~~~~~~~~~~~d~~~~~g~~~p~~~~Il~H- 259 (308)
T 3cl6_A 201 --------PTGKPHLVIPYT-LDTNDMR-F------T-Q---VQGFNKGDDFFEYLKDAFDVLYAEGAEAPKMLSIGLH- 259 (308)
T ss_dssp --------TTCSCCEECCCC-SSSBGGG-G------G-S---SSCCSSHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEE-
T ss_pred --------CCCCCEEEEccc-cccCcee-e------e-c---cCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEeC-
Confidence 123469999987 3332211 1 0 0 11246789999999999999998765 55 688999
Q ss_pred ccccCchhHHHHHHHHHHHHHcCCCeEEEeHHHHHHHh
Q psy16054 453 SWLKSKKEFKDELIKFIEEMLDRNDVYFVTMLQVIQWM 490 (563)
Q Consensus 453 ~~l~g~p~r~~al~~fl~~i~~~~dVwfvT~~ei~~w~ 490 (563)
+++.++|.++++|++||++++++++|||||.+||++|+
T Consensus 260 ~~~~g~~~~~~aL~~~l~~l~~~g~v~~~T~~eia~~~ 297 (308)
T 3cl6_A 260 CRLIGRPARLAALQRFIEYAKSHEQVWFTRRVDIARHW 297 (308)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTSSSEEECCHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCCEEEecHHHHHHHH
Confidence 55778899999999999999999999999999999955
No 5
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=99.92 E-value=2e-24 Score=207.79 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=105.4
Q ss_pred CCCceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccCC--CHHHHHHHHHcCCeecccCCCCCCCcCCCC
Q psy16054 217 VPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT--NYASVQELHRKGHEISVFSLTHKDDPKYWS 294 (563)
Q Consensus 217 ~pq~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~--~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~ 294 (563)
.++.|+||||||+... +..++++|++ +++||||||+|.+. ++++|++|+++|||||+|||+|..+.
T Consensus 3 ~~~~V~LTFDDG~~~~-~~~il~iL~~-------~~v~aTfFv~g~~~~~~~~~~~~~~~~GheIg~Ht~~H~~l~---- 70 (195)
T 2cc0_A 3 CNGYVGLTFDDGPSGS-TQSLLNALRQ-------NGLRATMFNQGQYAAQNPSLVRAQVDAGMWVANHSYTHPHMT---- 70 (195)
T ss_dssp CSEEEEEEEESCCSTT-HHHHHHHHHH-------TTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSCCCGG----
T ss_pred CCCEEEEEEcCCCchh-HHHHHHHHHH-------cCCCEEEEecChhhhhCHHHHHHHHHCCCEEEcCCCCccccc----
Confidence 3678999999999876 7888899975 78999999999875 77999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeE
Q psy16054 295 GGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVY 349 (563)
Q Consensus 295 ~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~Y 349 (563)
.++.+++++||.+++++|++.+|. .+++||+||+.++ +.++++|+++||.+
T Consensus 71 ~ls~~~~~~ei~~~~~~l~~~~G~---~~~~fr~P~G~~~-~~~~~~~~~~G~~~ 121 (195)
T 2cc0_A 71 QLGQAQMDSEISRTQQAIAGAGGG---TPKLFRPPYGETN-ATLRSVEAKYGLTE 121 (195)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTSC---CCSEECCGGGCCC-HHHHHHHHHTTCEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCC---CCCEEECCCCCcC-HHHHHHHHHCCCeE
Confidence 589999999999999999998775 5799999999999 47999999999975
No 6
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=99.91 E-value=8.1e-24 Score=210.19 Aligned_cols=189 Identities=12% Similarity=0.128 Sum_probs=144.6
Q ss_pred CCCceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccCC--CHHHHHHHHHcCCeecccCCCCCCCcCCCC
Q psy16054 217 VPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT--NYASVQELHRKGHEISVFSLTHKDDPKYWS 294 (563)
Q Consensus 217 ~pq~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~--~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~ 294 (563)
.++.|+||||||+.......++++|++ +++||||||+|.+. ++++|++|+++|||||+||++|..+.
T Consensus 41 ~~k~V~LTFDDG~~~~~t~~il~iL~~-------~~v~ATfFv~g~~~~~~p~~~~~~~~~GheIg~Ht~~H~~l~---- 109 (240)
T 1ny1_A 41 KEKTIYLTFDNGYENGYTPKVLDVLKK-------HRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNHSFHHPDLT---- 109 (240)
T ss_dssp TSSEEEEEEEESSCCSCHHHHHHHHHH-------TTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSCCCGG----
T ss_pred CCCEEEEEEeCCCCcccHHHHHHHHHH-------cCCCEEEEEeChhhhhCHHHHHHHHHCcCChhcCCccccccc----
Confidence 467899999999987766778899974 78999999999875 67999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeEEeecCCCCCCCCccceeccCCCCCC
Q psy16054 295 GGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITASLGRVPIWPYTLYFRMPHK 374 (563)
Q Consensus 295 ~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~YDsS~~~~~~~~p~wPytld~~~p~~ 374 (563)
.++.+++++||.+++++|++.+|.+ .+++||+|||.++. .++++|+++||.+-. |..+ +.|+
T Consensus 110 ~ls~~~~~~ei~~~~~~l~~~~G~~--~~~~fr~P~G~~~~-~~~~~l~~~G~~~v~-w~~d---------~~Dw----- 171 (240)
T 1ny1_A 110 TKTADQIQDELDSVNEEVYKITGKQ--DNLYLRPPRGVFSE-YVLKETKRLGYQTVF-WSVA---------FVDW----- 171 (240)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHSCC--CCCEECCGGGEECH-HHHHHHHHTTCEEBC-CSBC---------CSCC-----
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCC--CCcEEeCCCCCCCH-HHHHHHHHcCCEEEE-Cccc---------cccc-----
Confidence 5899999999999999999998863 27999999999994 799999999998521 1110 0010
Q ss_pred cCCCCCCCCCCCCCcEEEeccccccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHccCCcceEEeecccc
Q psy16054 375 CNGNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNRAPLGLHFHASW 454 (563)
Q Consensus 375 c~~~~~pcp~~~~~lweiP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~nrap~~l~lH~~~ 454 (563)
... ...+.+.+++.++++. .++ -.|.+| .
T Consensus 172 -----------------------~~~-------------------~~~~~~~~~~~v~~~~-----~~g--~Iil~H-d- 200 (240)
T 1ny1_A 172 -----------------------KIN-------------------NQKGKKYAYDHMIKQA-----HPG--AIYLLH-T- 200 (240)
T ss_dssp -----------------------CGG-------------------GCCCHHHHHHHHHHTC-----CTT--EEEEEC-S-
T ss_pred -----------------------CCc-------------------CCCCHHHHHHHHHhCC-----CCC--eEEEEc-C-
Confidence 000 0122444444443321 122 467889 3
Q ss_pred ccCchhHHHHHHHHHHHHHcCCCeEEEeHHHHHH
Q psy16054 455 LKSKKEFKDELIKFIEEMLDRNDVYFVTMLQVIQ 488 (563)
Q Consensus 455 l~g~p~r~~al~~fl~~i~~~~dVwfvT~~ei~~ 488 (563)
+.+...++|.++|++++++ +.-|||.+|++.
T Consensus 201 --~~~~t~~aL~~ii~~l~~~-Gy~fvtl~el~~ 231 (240)
T 1ny1_A 201 --VSRDNAEALDDAITDLKKQ-GYTFKSIDDLMF 231 (240)
T ss_dssp --CSTTHHHHHHHHHHHHHHH-TCEEECHHHHHH
T ss_pred --CChhHHHHHHHHHHHHHHC-CCEEEEhHHhhc
Confidence 2345789999999999976 799999999975
No 7
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi}
Probab=99.91 E-value=1.5e-24 Score=217.38 Aligned_cols=192 Identities=15% Similarity=0.117 Sum_probs=143.4
Q ss_pred CCCCceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEE-EEeccCC--CHH-HHHHHHHcCCeecccCCCC--CCC
Q psy16054 216 QVPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTF-FVSHKYT--NYA-SVQELHRKGHEISVFSLTH--KDD 289 (563)
Q Consensus 216 ~~pq~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTF-Fv~~~~~--~y~-~v~~i~~~GHEIa~H~~~H--~~~ 289 (563)
..++.|+||||||+....+..++++|++ +++|||| ||+|.+. +++ +|++|+++|||||+|||+| ..+
T Consensus 23 ~~~k~VaLTFDDG~~~~~t~~il~iL~~-------~~v~ATF~Fv~g~~~~~~p~~~~~~i~~~GheIg~Ht~~H~~~~l 95 (254)
T 2vyo_A 23 TNSGMIAINFVDGPVRGVTDRILNTLDE-------LGVKATFSFTVNQKAVGNVGQLYRRAVEEGHNVALRVDPSMDEGY 95 (254)
T ss_dssp SSSSEEEEEEESCCCTTHHHHHHHHHHH-------HTCCCEEEECCSSCCCGGGTHHHHHHHHTTCEEEEECCGGGTTCG
T ss_pred CCCCEEEEEEeCCCCcccHHHHHHHHHH-------cCCCEEEEEccChHHhHCHHHHHHHHHhCCCEEEecCCCCCCcCc
Confidence 3567899999999987767788899974 7899999 9999986 457 9999999999999999999 776
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCc--cccChhhHHHHHHHcCCeEEeecCCCCCCCCccceec
Q psy16054 290 PKYWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPY--LRVGGNKQFSMMTDQFFVYDASITASLGRVPIWPYTL 367 (563)
Q Consensus 290 ~~~~~~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~--l~~~~~~~~~~L~e~Gf~YDsS~~~~~~~~p~wPytl 367 (563)
. .++.+++++||.+++++|++.+|. .+++||+|| |.++. .++++++++||.+- .|..
T Consensus 96 ~----~ls~~~~~~ei~~~~~~l~~~~G~---~~~~fr~P~~~G~~~~-~~~~~l~~~G~~~v-~w~v------------ 154 (254)
T 2vyo_A 96 Q----CLSQDALENNVDREIDTIDGLSGT---EIRYAAVPICNGQVNS-EMYNILTERGVLPV-GYTF------------ 154 (254)
T ss_dssp G----GSCHHHHHHHHHHHHHHHHHHHTS---CCCEEECCCBTTEECH-HHHHHHHTTTCEEC-CCSB------------
T ss_pred c----cCCHHHHHHHHHHHHHHHHHHHCC---CCeEEeCCccCCCCCH-HHHHHHHHCCCEEE-Eecc------------
Confidence 4 589999999999999999999885 489999999 99994 79999999999862 1211
Q ss_pred cCCCCCCcCCCCCCCCCCCCCcEEEeccccccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHccCCcceE
Q psy16054 368 YFRMPHKCNGNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNRAPLG 447 (563)
Q Consensus 368 d~~~p~~c~~~~~pcp~~~~~lweiP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~nrap~~ 447 (563)
| ..|. .. .++ +.+.++++ .........
T Consensus 155 d------------------------------~~Dw-----~~------------~~~--~~~~v~~~----~~~~~~g~I 181 (254)
T 2vyo_A 155 C------------------------------PYDY-----DD------------PVG--EFESMIEG----SDPKHHSFI 181 (254)
T ss_dssp C------------------------------GGGS-----SS------------HHH--HHHHHHHT----SCTTTCCEE
T ss_pred C------------------------------Cccc-----cc------------chH--HHHHHHHh----ccccCCCcE
Confidence 1 0000 00 001 22222211 111011356
Q ss_pred EeeccccccCchhHHHHHHHHHHHHHcCCCeEEEeHHH-HHHHhhCC
Q psy16054 448 LHFHASWLKSKKEFKDELIKFIEEMLDRNDVYFVTMLQ-VIQWMQNP 493 (563)
Q Consensus 448 l~lH~~~l~g~p~r~~al~~fl~~i~~~~dVwfvT~~e-i~~w~~~p 493 (563)
+.+| ... +..+++|.++|++++++ +++|||.+| +++|-+.+
T Consensus 182 iL~H-d~~---~~t~~aL~~ii~~l~~~-Gy~fvtl~e~l~~~~~~~ 223 (254)
T 2vyo_A 182 ILMH-DGQ---EADTSRLENMVKIGKDK-GYRFVNMDECLQGYKGAP 223 (254)
T ss_dssp EEEE-GGG---GSSCHHHHHHHHHHHHH-TCEECCHHHHTTTCC---
T ss_pred EEEe-CCc---hhHHHHHHHHHHHHHHC-CCEEEEchHhhhcccccC
Confidence 8889 422 56789999999999976 799999999 88765433
No 8
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=99.91 E-value=4e-24 Score=220.04 Aligned_cols=202 Identities=13% Similarity=0.109 Sum_probs=149.2
Q ss_pred CCCCCCCceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccCC---CHHHHHHHHHcCCeecccCCCCCCC
Q psy16054 213 EPNQVPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT---NYASVQELHRKGHEISVFSLTHKDD 289 (563)
Q Consensus 213 ~~~~~pq~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~---~y~~v~~i~~~GHEIa~H~~~H~~~ 289 (563)
.....++.|+||||||+....+..++++|++ +++||||||+|.+. ++++|++|+++|||||+|||+|..+
T Consensus 101 ~~~~~~k~VaLTFDDGp~~~~t~~iLdiL~~-------~~vkATFFv~G~~i~~~~p~~vr~i~~~GheIgnHt~sH~~~ 173 (311)
T 2w3z_A 101 QASAKQKLVFLTFDDGVDPNMTPKILDVLAQ-------QHVHATFFLVGCNITDKVKPILQRQITEGHALGIHSFSHVYS 173 (311)
T ss_dssp -----CCEEEEEEEEECCTTHHHHHHHHHHH-------TTCCCEEEECGGGCCGGGHHHHHHHHHTTCEEEECCSSCCHH
T ss_pred CCCCCCCEEEEEEcCCCCcccHHHHHHHHHH-------cCCcEEEEEeChhhcccCHHHHHHHHHCCCeeeccCCccccc
Confidence 3344578999999999998766788899974 78999999999985 4699999999999999999999764
Q ss_pred cCCC-CCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChh---hHHHHHHHcCCeEEeecCCCCCCCCccce
Q psy16054 290 PKYW-SGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGN---KQFSMMTDQFFVYDASITASLGRVPIWPY 365 (563)
Q Consensus 290 ~~~~-~~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~---~~~~~L~e~Gf~YDsS~~~~~~~~p~wPy 365 (563)
..|. ..++.+++++||.+++++|++.+|.. ..+++||+|||.++.. .+.++|+++||.|. . |..
T Consensus 174 ~~~~~~~ls~~~~~~Ei~~~~~~L~~~~G~~-~~p~~fR~PyG~~~~~~~~~~~~~l~~~G~~~v-~----------W~v 241 (311)
T 2w3z_A 174 LLYPNRVGNTQQIVSEVTRTQNALKDQLGQN-FKTGVWRYPGGHLSWTGLEAADKQLAAQGIQWM-D----------WNA 241 (311)
T ss_dssp HHSGGGBCCHHHHHHHHHHHHHHHHHHHCTT-BCCCEECCTTCGGGCBCCHHHHHHHHTTTCEEC-C----------CSE
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhCCC-CCCcEEECCCCCcChhHHHHHHHHHHHCCCEEE-c----------CCc
Confidence 3111 25799999999999999999998832 2478999999998853 24579999999873 2 221
Q ss_pred e-ccCCCCCCcCCCCCCCCCCCCCcEEEeccccccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHccCCc
Q psy16054 366 T-LYFRMPHKCNGNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNRA 444 (563)
Q Consensus 366 t-ld~~~p~~c~~~~~pcp~~~~~lweiP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~nra 444 (563)
. .|+ . .+ + ....+++++++.+++++. .+.+ +.
T Consensus 242 d~~D~----------------------------~---~~------------~--~~~~~~~~i~~~v~~~~~-~~~~-~~ 274 (311)
T 2w3z_A 242 AVGDA----------------------------E---PL------------A--TRPTTVASMLAFLDGSAK-IATN-PN 274 (311)
T ss_dssp ECCTT----------------------------S---CG------------G--GCCCSHHHHHHHHHHHTT-TCSC-TT
T ss_pred cCCcc----------------------------c---cc------------c--cCCCCHHHHHHHHHHHhh-hccC-CC
Confidence 0 110 0 00 0 012457788888888775 2322 23
Q ss_pred ceEEeeccccccCchhHHHHHHHHHHHHHcCCCeEEEeH
Q psy16054 445 PLGLHFHASWLKSKKEFKDELIKFIEEMLDRNDVYFVTM 483 (563)
Q Consensus 445 p~~l~lH~~~l~g~p~r~~al~~fl~~i~~~~dVwfvT~ 483 (563)
...|.+| + ..+++..+++|.++|++++++ +..|||+
T Consensus 275 g~IIL~H-d-~~g~~~t~~aL~~iI~~Lk~~-Gy~fvtl 310 (311)
T 2w3z_A 275 VQVVLMH-D-ISEKTITLASLPQIIRYYKDR-GYTFAVL 310 (311)
T ss_dssp EEEEEEE-C-STTCHHHHHHHHHHHHHHHHT-TCEECEE
T ss_pred CEEEEEe-C-CCChhhHHHHHHHHHHHHHHC-CCEEEec
Confidence 4678999 4 345678999999999999965 8889885
No 9
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=99.91 E-value=1.9e-23 Score=206.26 Aligned_cols=118 Identities=20% Similarity=0.334 Sum_probs=105.8
Q ss_pred CCCceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccCC--CHHHHHHHHHcCCeecccCCCCCCCcCCCC
Q psy16054 217 VPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT--NYASVQELHRKGHEISVFSLTHKDDPKYWS 294 (563)
Q Consensus 217 ~pq~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~--~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~ 294 (563)
.++.|+||||||+. .++..++++|++ +++||||||+|.+. ++++|++|+++|||||+||++|..+.
T Consensus 31 ~~k~VaLTFDDGp~-~~~~~il~iL~~-------~~v~ATfFv~g~~~~~~p~~~~~~~~~GheIg~Ht~~H~~l~---- 98 (230)
T 2y8u_A 31 TPNTIALTFDDGPS-EYTPQLLDLLSR-------YSARATFFVLGDAAAQNPGLLQRMRDEGHQVGAHTYDHVSLP---- 98 (230)
T ss_dssp STTEEEEEEESCCC-TTHHHHHHHHHH-------TTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSCCCGG----
T ss_pred CCCEEEEEecCCch-hhHHHHHHHHHH-------cCCCEEEEEecHHHhHCHHHHHHHHHCCCEEEecccCCCCcc----
Confidence 56899999999998 557888899974 78999999999875 67999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeEE
Q psy16054 295 GGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYD 350 (563)
Q Consensus 295 ~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~YD 350 (563)
.++.+++++||.+++++|++.+|. .+++||+|||.++. .++++|+++||.+.
T Consensus 99 ~ls~~~~~~ei~~~~~~l~~~~G~---~~~~fr~P~G~~~~-~~~~~l~~~G~~~~ 150 (230)
T 2y8u_A 99 SLGYDGIASQMTRLEEVIRPALGV---APAYMRPPYLETNE-LVLQVMRDLDYRVI 150 (230)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHSS---CBSEECCGGGCCCH-HHHHHHHHTTCEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCC---CCcEEECCCCCCCH-HHHHHHHHcCCEEE
Confidence 589999999999999999999885 47899999999994 79999999999764
No 10
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3
Probab=99.90 E-value=5e-23 Score=206.21 Aligned_cols=118 Identities=17% Similarity=0.239 Sum_probs=105.0
Q ss_pred CCCceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccC---C---CH-HHHHHHHHcCCeecccCCCCCCC
Q psy16054 217 VPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKY---T---NY-ASVQELHRKGHEISVFSLTHKDD 289 (563)
Q Consensus 217 ~pq~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~---~---~y-~~v~~i~~~GHEIa~H~~~H~~~ 289 (563)
.++.|+||||||+. .++..++++|++ +++||||||+|.+ . .+ ++|++|+++|||||+|||+|..+
T Consensus 40 ~~k~V~LTFDDGp~-~~~~~il~iL~~-------~~vkATFFv~g~~~g~~~~~~~p~~lr~i~~~GheIg~Ht~~H~~l 111 (254)
T 2iw0_A 40 QPGLVALTYDDGPF-TFTPQLLDILKQ-------NDVRATFFVNGNNWANIEAGSNPDTIRRMRADGHLVGSHTYAHPDL 111 (254)
T ss_dssp SSSEEEEEEESCSC-TTHHHHHHHHHH-------HTCCCEEEECSBSSSBTTSTTHHHHHHHHHHTTCEEEECCSSCCCG
T ss_pred CCCEEEEEeccCch-hhHHHHHHHHHH-------cCCCEEEEEECCcccccccccCHHHHHHHHHCCCEEEeeccCCCCc
Confidence 56799999999998 457888899975 6899999999987 2 45 99999999999999999999876
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeEE
Q psy16054 290 PKYWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYD 350 (563)
Q Consensus 290 ~~~~~~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~YD 350 (563)
. .++.+++++||.+++++|++.+|. .+++||+|||.++. .++++|+++||.+-
T Consensus 112 ~----~ls~~~~~~ei~~~~~~l~~~~G~---~~~~fr~P~G~~~~-~~~~~l~~~G~~~v 164 (254)
T 2iw0_A 112 N----TLSSADRISQMRQLEEATRRIDGF---APKYMRAPYLSCDA-GCQGDLGGLGYHII 164 (254)
T ss_dssp G----GSCHHHHHHHHHHHHHHHHHHHSC---EESEECCGGGCCCH-HHHHHHHHTTCEEE
T ss_pred c----cCCHHHHHHHHHHHHHHHHHHhCC---CCCEEECCCCCCCH-HHHHHHHHcCCeEE
Confidence 4 589999999999999999998885 58999999999995 79999999999863
No 11
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=99.90 E-value=1.9e-23 Score=208.45 Aligned_cols=119 Identities=17% Similarity=0.218 Sum_probs=106.4
Q ss_pred CCCceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccCC--CHHHHHHHHHcCCeecccCCCCCCCcCCCC
Q psy16054 217 VPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT--NYASVQELHRKGHEISVFSLTHKDDPKYWS 294 (563)
Q Consensus 217 ~pq~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~--~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~ 294 (563)
.++.|+||||||+.......++++|++ +++||||||+|.+. ++++|++|+++|||||+|||+|..+.
T Consensus 53 ~~k~V~LTFDDG~~~~~t~~il~iL~~-------~~v~ATfFv~g~~~~~~p~~~~~~~~~GheIg~Ht~~H~~l~---- 121 (247)
T 2j13_A 53 KKKDIYLTFDNGYENGYTGKILDVLKE-------KKVPATFFVTGHYIKTQKDLLLRMKDEGHIIGNHSWSHPDFT---- 121 (247)
T ss_dssp TSCEEEEEEEESSCCSCHHHHHHHHHH-------HTCCEEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSCCCGG----
T ss_pred CCCEEEEEEeCCCCcccHHHHHHHHHH-------cCCCEEEEEeChhhhhCHHHHHHHHHCCCEEEecCCCCcChh----
Confidence 457899999999887766778899974 68999999999875 67999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeE
Q psy16054 295 GGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVY 349 (563)
Q Consensus 295 ~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~Y 349 (563)
.++.+++++||.+++++|++.+|.. .+++||+|||.++. .++++|+++||.+
T Consensus 122 ~ls~~~~~~ei~~~~~~l~~~~G~~--~~~~fr~P~G~~~~-~~~~~l~~~G~~~ 173 (247)
T 2j13_A 122 AVNDEKLREELTSVTEEIKKVTGQK--EVKYVRPPRGVFSE-RTLALTKEMGYYN 173 (247)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHCCS--CCCEECCGGGEECH-HHHHHHHHTTCEE
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCC--CCcEEeCCCCCCCH-HHHHHHHHCCCEE
Confidence 5899999999999999999998863 37899999999994 7999999999986
No 12
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=99.90 E-value=1.8e-23 Score=204.45 Aligned_cols=184 Identities=19% Similarity=0.199 Sum_probs=136.3
Q ss_pred CCceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccCCC--HH-HHHHHHHcCCeecccCCCCCCCcCCCC
Q psy16054 218 PQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYTN--YA-SVQELHRKGHEISVFSLTHKDDPKYWS 294 (563)
Q Consensus 218 pq~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~~--y~-~v~~i~~~GHEIa~H~~~H~~~~~~~~ 294 (563)
.+.|+||||||+.......++++|++ +++||||||+|.+.. ++ +|++|+++|||||+||++|..+.
T Consensus 4 ~k~V~LTFDDG~~~~~t~~il~iL~~-------~~v~ATfFv~g~~~~~~p~~~~~~~~~~GheIg~Ht~~H~~l~---- 72 (216)
T 2c71_A 4 NKLVALTFDDGPDNVLTARVLDKLDK-------YNVKATFMVVGQRVNDSTAAIIRRMVNSGHEIGNHSWSYSGMA---- 72 (216)
T ss_dssp -CEEEEEEESCCCHHHHHHHHHHHHH-------HTCCCEEEECGGGCSHHHHHHHHHHHHTTCEEEECCSSSSCCT----
T ss_pred CCEEEEEEecCCCcccHHHHHHHHHH-------cCCCEEEEEEChhhhhCHHHHHHHHHHCCCEEeeCCcCCcchh----
Confidence 46799999999987655678899974 789999999999873 36 99999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeEEeecCCCCCCCCccceeccCCCCCC
Q psy16054 295 GGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITASLGRVPIWPYTLYFRMPHK 374 (563)
Q Consensus 295 ~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~YDsS~~~~~~~~p~wPytld~~~p~~ 374 (563)
.++.+++++||.+++++|++.+|. .+++||+|||.++. .++++|++ |+.|+. |.
T Consensus 73 ~ls~~~~~~ei~~~~~~l~~~~G~---~~~~fr~P~G~~~~-~~~~~l~~-~i~w~~----------------d~----- 126 (216)
T 2c71_A 73 NMSPDQIRKSIADTNAVIQKYAGT---TPKFFRPPNLETSP-TLFNNVDL-VFVGGL----------------TA----- 126 (216)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHSC---CCSEECCGGGCCCH-HHHHHCCS-EEBCCB----------------CC-----
T ss_pred hCCHHHHHHHHHHHHHHHHHhhCC---CCeEEECCCCCCCH-HHHHHHHh-ceEEEe----------------cc-----
Confidence 589999999999999999999885 48999999999994 67777766 332110 10
Q ss_pred cCCCCCCCCCCCCCcEEEeccccccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHccCCcceEEeecccc
Q psy16054 375 CNGNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNRAPLGLHFHASW 454 (563)
Q Consensus 375 c~~~~~pcp~~~~~lweiP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~nrap~~l~lH~~~ 454 (563)
.++. ...+++++.+.++.+ . .++ -.+.+|...
T Consensus 127 ----------------------~Dw~-------------------~~~~~~~i~~~v~~~----~-~~g--~IiL~Hd~~ 158 (216)
T 2c71_A 127 ----------------------NDWI-------------------PSTTAEQRAAAVING----V-RDG--TIILLHDVQ 158 (216)
T ss_dssp ----------------------STTC-------------------TTSCHHHHHHHHHHH----C-CTT--BEEEEESCC
T ss_pred ----------------------cccc-------------------CCCCHHHHHHHHHhc----C-CCC--cEEEEECCC
Confidence 0000 012345555444332 1 122 247788321
Q ss_pred ccCchhHHHHHHHHHHHHHcCCCeEEEeHHHHHH
Q psy16054 455 LKSKKEFKDELIKFIEEMLDRNDVYFVTMLQVIQ 488 (563)
Q Consensus 455 l~g~p~r~~al~~fl~~i~~~~dVwfvT~~ei~~ 488 (563)
.....-.++|.++|++++++ +..|||.+|++.
T Consensus 159 -~~~~~t~~al~~ii~~l~~~-Gy~fvtl~ell~ 190 (216)
T 2c71_A 159 -PEPHPTPEALDIIIPTLKSR-GYEFVTLTELFT 190 (216)
T ss_dssp -SSSCCHHHHHHHHHHHHHHT-TCEECCHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHC-CCEEEEhHHhhc
Confidence 11234678999999999976 899999999976
No 13
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Probab=99.88 E-value=5e-22 Score=212.24 Aligned_cols=183 Identities=20% Similarity=0.249 Sum_probs=139.7
Q ss_pred CCCceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccCC--CHHHHHHHHHcCCeecccCCCCCCCcCCCC
Q psy16054 217 VPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT--NYASVQELHRKGHEISVFSLTHKDDPKYWS 294 (563)
Q Consensus 217 ~pq~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~--~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~ 294 (563)
.++.|+||||||+.....+.++++|++ +++||||||+|.+. ++++|++|+++|||||+|||+|..+.
T Consensus 234 ~~k~VaLTFDDGp~~~~t~~il~iL~k-------~~vkATFFvig~~i~~~p~~lr~m~~~GheIgnHT~sH~~l~---- 302 (431)
T 2c1i_A 234 HQKVVALTFNDGPNPATTPQVLETLAK-------YDIKATFFVLGKNVSGNEDLVKRIKSEGHVVGNHSWSHPILS---- 302 (431)
T ss_dssp TCCEEEEEEESCCCTTTHHHHHHHHHH-------TTCCCEEEECGGGTTTCHHHHHHHHHTTCEEEECCSSCCCGG----
T ss_pred CCCEEEEEEeCCCCcchHHHHHHHHHH-------cCCcEEEEEECccccCCHHHHHHHHHCCCEEeecCCCCcccc----
Confidence 457899999999998766678899974 78999999999986 77999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeEEeecCCCCCCCCccceeccCCCCCC
Q psy16054 295 GGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITASLGRVPIWPYTLYFRMPHK 374 (563)
Q Consensus 295 ~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~YDsS~~~~~~~~p~wPytld~~~p~~ 374 (563)
.++.+++++||.+++++|++.+|. .+++||+|||.++. . +++++||.+- . |- +|.
T Consensus 303 ~ls~~~~~~EI~~s~~~L~~~~G~---~~~~fr~PyG~~n~-~---v~~~~G~~~v-~----------Ws--vDs----- 357 (431)
T 2c1i_A 303 QLSLDEAKKQITDTEDVLTKVLGS---SSKLMRPPYGAITD-D---IRNSLDLSFI-M----------WD--VDS----- 357 (431)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHSC---CCCEECCGGGCCCH-H---HHHTSSCEEE-C----------CS--EEC-----
T ss_pred cCCHHHHHHHHHHHHHHHHHhhCC---CCeEEECCCCCCCH-H---HHHHCCCeEE-E----------ee--ccC-----
Confidence 589999999999999999999885 48999999999984 3 3566777541 1 11 110
Q ss_pred cCCCCCCCCCCCCCcEEEeccccccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHccCCcceEEeecccc
Q psy16054 375 CNGNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNRAPLGLHFHASW 454 (563)
Q Consensus 375 c~~~~~pcp~~~~~lweiP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~nrap~~l~lH~~~ 454 (563)
.++. ..+++.+++.++. ... ++ -.+.+| .
T Consensus 358 ----------------------~Dw~--------------------~~~~~~i~~~v~~----~~~-~G--~IIL~H-D- 386 (431)
T 2c1i_A 358 ----------------------LDWK--------------------SKNEASILTEIQH----QVA-NG--SIVLMH-D- 386 (431)
T ss_dssp ----------------------CHHH--------------------HCCHHHHHHHHHH----HCC-TT--EEEEEE-T-
T ss_pred ----------------------Cccc--------------------cCCHHHHHHHHHH----hcc-CC--CEEEEC-C-
Confidence 0100 0124444443332 221 22 357889 3
Q ss_pred ccCchhHHHHHHHHHHHHHcCCCeEEEeHHHHHHH
Q psy16054 455 LKSKKEFKDELIKFIEEMLDRNDVYFVTMLQVIQW 489 (563)
Q Consensus 455 l~g~p~r~~al~~fl~~i~~~~dVwfvT~~ei~~w 489 (563)
+.+..+++|.++|++++++ +++|||.+|++..
T Consensus 387 --~~~~tv~aL~~iI~~Lk~~-Gy~fvtl~ell~~ 418 (431)
T 2c1i_A 387 --IHSPTVNALPRVIEYLKNQ-GYTFVTIPEMLNT 418 (431)
T ss_dssp --TSHHHHHHHHHHHHHHHHT-TCEECCHHHHHGG
T ss_pred --CchHHHHHHHHHHHHHHHC-CCEEEEHHHHhcC
Confidence 2477899999999999976 7999999999864
No 14
>3hft_A WBMS, polysaccharide deacetylase involved in O-AN biosynthesis; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Bordetella bronchiseptica}
Probab=99.84 E-value=1e-21 Score=190.28 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=100.2
Q ss_pred CceEEeecCCcCCCC-chHHHHHhccCCCCCCCCCCceEEEEeccCCCHHHHHHHHHcCCeecccCCCCCCCcCCCCCCC
Q psy16054 219 QMITITFNGAVNVDN-SDLYDEIFNGNRQNPNGCQIKGTFFVSHKYTNYASVQELHRKGHEISVFSLTHKDDPKYWSGGS 297 (563)
Q Consensus 219 q~V~lTFDD~~~~~~-~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~~~s 297 (563)
+.|+||||.++.... .+.+++||++ ++|||||||+|.+ ..+++.+.++|||||+|++-|..... ..
T Consensus 37 k~iaLTFDi~Wg~~~~iprILdiL~~-------~~VkATFFv~G~~--p~i~k~I~~~GHEIG~H~~~~~ls~~---~~- 103 (257)
T 3hft_A 37 GRIFLTFDIDWAADFVLQDTIDLIEG-------AGVCATWFATHST--PLLENIRRNPLFELGVHPNFNPLLAG---AH- 103 (257)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHH-------HTCCEEEEECSCC--THHHHHHHCTTEEEEECCCCHHHHHS---CC-
T ss_pred ceEEEEEECCCcchhhHHHHHHHHHH-------cCCCeEEEecCCC--HHHHHHHHHCCcEEEeCCCccccChh---hh-
Confidence 589999998887766 4889999975 6899999999986 36667777899999999876652210 11
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeEEeecCCCC-CCCCccceeccCCCCCCcC
Q psy16054 298 YDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITASL-GRVPIWPYTLYFRMPHKCN 376 (563)
Q Consensus 298 ~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~YDsS~~~~~-~~~p~wPytld~~~p~~c~ 376 (563)
.++.++.|.++.+++ .+++|||+|.+..+. .++++|+++||+||||++.+. ....+-||.+.-
T Consensus 104 ~~e~ee~L~r~leil--------~~pvGyRaPsw~~s~-~tl~lL~e~Gf~YDSSl~~~gD~~~dd~PY~~~~------- 167 (257)
T 3hft_A 104 AEGVQEILDRTLELA--------PGCVSVRSHSLVQAT-SILNMFGERRLRYDCNILVPWDAGIVLQPWRHWT------- 167 (257)
T ss_dssp SCCHHHHHHHHHTTS--------TTCCEECCGGGCCCH-HHHHHHHHTTCCEECCCBCCTTSSCCCCCEECSS-------
T ss_pred hHHHHHHHHHHHhcc--------cCceEEECCCccCCH-hHHHHHHHcCCcEEcccCcCCCcccCcCCeEcCC-------
Confidence 111224455544433 248999999999995 799999999999999996211 112356776421
Q ss_pred CCCCCCCCCCCCcEEEeccc
Q psy16054 377 GNAHNCPSKSHPTWEMVMNE 396 (563)
Q Consensus 377 ~~~~pcp~~~~~lweiP~~~ 396 (563)
.+|+|||+++
T Consensus 168 ----------G~LVEiPv~W 177 (257)
T 3hft_A 168 ----------GDMVRVPYLW 177 (257)
T ss_dssp ----------TTCEECCBCE
T ss_pred ----------CCEEEEecee
Confidence 1499999975
No 15
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}
Probab=99.76 E-value=1.3e-18 Score=175.35 Aligned_cols=125 Identities=10% Similarity=0.100 Sum_probs=100.6
Q ss_pred CCceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccC---------------------CCHHHHHHHHHcC
Q psy16054 218 PQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKY---------------------TNYASVQELHRKG 276 (563)
Q Consensus 218 pq~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~---------------------~~y~~v~~i~~~G 276 (563)
++.|+||||||+.+. +..+++||++ +++||||||++.+ .++++|++|.++|
T Consensus 65 ~~~v~lTfDDg~~~~-~~~~~~~l~~-------~~~~atfFv~~~~v~~~~~~~~~~g~~~~~~~~~lt~~~lr~m~~~G 136 (268)
T 3vus_A 65 EKAVVLTFDDGYQSF-YTRVFPILQA-------FQWPAVWAPVGSWVDTPADKQVKFGDELVDREYFATWQQVREVARSR 136 (268)
T ss_dssp TTEEEEEEEETBHHH-HHHHHHHHHH-------HTCCEEEEECHHHHTSCSSSCEEETTEEECGGGBCCHHHHHHHHHTT
T ss_pred CCEEEEEEeCCchhH-HHHHHHHHHH-------cCCCEEEEEeccccCCccccccccccccccccccCCHHHHHHHHHCC
Confidence 478999999999765 5567899974 7899999999843 3578999999999
Q ss_pred -CeecccCCC-CCCCcC--------------CCC----CCC----HHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccc
Q psy16054 277 -HEISVFSLT-HKDDPK--------------YWS----GGS----YDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLR 332 (563)
Q Consensus 277 -HEIa~H~~~-H~~~~~--------------~~~----~~s----~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~ 332 (563)
||||+||++ |..+.. |+. ..+ .+++++||.+++++|++.+|. .++.||+|||.
T Consensus 137 ~~eIgsHT~~hH~~~~~~~~G~~~p~~~~~~y~~~~~~~es~~~~~~~i~~ei~~s~~~l~~~~G~---~~~~fr~PyG~ 213 (268)
T 3vus_A 137 LVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTKVEV---NPHVFVWPYGE 213 (268)
T ss_dssp SEEECBCCSSCCSBCCCC-----CBTTSSCCEETTTTEECCHHHHHHHHHHHHHHHHHHHHHHSCC---CCCEEECGGGC
T ss_pred CeEEecCccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEeCCCc
Confidence 999999999 543210 000 023 456788999999999998885 47899999999
Q ss_pred cChhhHHHHHHHcCCeEEeecC
Q psy16054 333 VGGNKQFSMMTDQFFVYDASIT 354 (563)
Q Consensus 333 ~~~~~~~~~L~e~Gf~YDsS~~ 354 (563)
++. .++++++++||.+..+..
T Consensus 214 ~n~-~~~~~~~~~Gy~~a~t~~ 234 (268)
T 3vus_A 214 ANG-IAIEELKKLGYDMFFTLE 234 (268)
T ss_dssp CCH-HHHHHHHHTTCCEEECCC
T ss_pred CCH-HHHHHHHHCCCcEEEEec
Confidence 995 799999999999988774
No 16
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.75 E-value=9.3e-18 Score=190.80 Aligned_cols=157 Identities=24% Similarity=0.461 Sum_probs=103.3
Q ss_pred CCCCCccccc-cCCCCCC-CCceecCCC-CC-------CCCeeeCCCCCCCCc------cccceeeCCCCccccCCCCCC
Q psy16054 18 SGDDEPSVEQ-LCEGRPP-EEYFRLTIE-GD-------CRDVVRCDQAGENGI------TRLAGVRCPNGLAFDIDRQTC 81 (563)
Q Consensus 18 ~~~~~~~~~~-~C~~~~~-~~~f~~~~~-~~-------C~~~~~C~~~~~~~~------~~~~~~~Cp~Gl~~d~~~~~C 81 (563)
+=.|+++|.. .|..+.+ .+.|.+... +. |+....|.+|. ||. +...+|+|.+|.++.. .+.|
T Consensus 30 dC~d~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgs-DE~~C~~~~C~~~~f~C~~g~Ci~~-~~~C 107 (699)
T 1n7d_A 30 ECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGS-DEQGCPPKTCSQDEFRCHDGKCISR-QFVC 107 (699)
T ss_dssp --------------CCSCSSSSCCCCC--CCCCCSSSTTSSSCCC-CCC-TTTSCSSCCCCSSCCCSSCC----C-CCTT
T ss_pred cCCCCCCCCccccCCcCCCCCccCCCCCCCceeCcceecCCcccCCCCc-ccCcccccccccCcEEcCCCCEecH-HHcC
Confidence 3345566554 3543221 245666542 23 55667777774 553 4557899999987643 3444
Q ss_pred ------CCCCCcCCCcc-ccccCcccCCCCceecCCCCCcCCCcCCCCCCccCCC--CCccCcCC--CCCCCCCCCCccc
Q psy16054 82 ------DWKTNVKNCDL-LESLKQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRP--RKVLPILK--TDEPVCPEGKLSC 150 (563)
Q Consensus 82 ------d~~~~v~~C~~-~~~~~~~~C~~G~~~~~~~~~CD~~~~v~dC~d~sde--~~~~p~~~--~~~~~C~~~~f~C 150 (563)
.+.+||.+|.. .+.+.+|+|.+|.|| +..|+|| ++.||.|+||| .+|..... .....|...+|+|
T Consensus 108 dg~~dC~dgsDE~~C~~~~C~~~~f~C~~~~Ci-~~~~~Cd---g~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C 183 (699)
T 1n7d_A 108 DSDRDCLDGSDEASCPVLTCGPASFQCNSSTCI-PQLWACD---NDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC 183 (699)
T ss_dssp CSSCCSSSSCSSSSCCCCCCCSSCCCCSSSCCC-CTTSTTC---SSCCSSSSSSSSCSSSSCCCCCSSCCCCSCSSSCCC
T ss_pred CCcCcCCCCCccCCcCccccCccccCCCCCccc-chhcccC---CCCcCCCCcccccccCCCcccccCCCCCCCCcceec
Confidence 45677888853 455789999999999 6677899 88999999999 77753210 0123699999999
Q ss_pred CCCceecCccccCCCCCCCCCCcccccCCC
Q psy16054 151 GNGECIDKTLFCDDKPDCKDESDENACSVE 180 (563)
Q Consensus 151 ~~G~Ci~~~~~Cdg~~DC~DgsDE~~C~~~ 180 (563)
.+|.||+..|+|||..||.|||||.+|...
T Consensus 184 ~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~ 213 (699)
T 1n7d_A 184 LSGECIHSSWRCDGGPDCKDKSDEENCAVA 213 (699)
T ss_dssp SSSCCCSTTCTTSSSCCSTTSCSSCSCCCC
T ss_pred CCCceEechhccCCCCCCCCCcccccCCCc
Confidence 999999999999999999999999999754
No 17
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.70 E-value=6.3e-17 Score=183.95 Aligned_cols=164 Identities=20% Similarity=0.413 Sum_probs=108.6
Q ss_pred CCCeeeCCCCCCCCc--------cccceeeCCCCc-cccCCCCCCC------CCCCcCCCcc-ccccCcccCCCCceecC
Q psy16054 46 CRDVVRCDQAGENGI--------TRLAGVRCPNGL-AFDIDRQTCD------WKTNVKNCDL-LESLKQISCPSGLAFDV 109 (563)
Q Consensus 46 C~~~~~C~~~~~~~~--------~~~~~~~Cp~Gl-~~d~~~~~Cd------~~~~v~~C~~-~~~~~~~~C~~G~~~~~ 109 (563)
|+....|.+++ ||. +...+|+|.+|. .+.+..+.|| +.+||.+|.. .+.+.+|+|.+|.|| +
T Consensus 25 Cdg~~dC~d~s-DE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~g~Ci-~ 102 (699)
T 1n7d_A 25 CDGSAECQDGS-DESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCI-S 102 (699)
T ss_dssp --------------------CCSCSSSSCCCCC--CCCCCSSSTTSSSCCC-CCCTTTSCSSCCCCSSCCCSSCC-----
T ss_pred CCCcccCCCCC-CCCccccCCcCCCCCccCCCCCCCceeCcceecCCcccCCCCcccCcccccccccCcEEcCCCCEe-c
Confidence 55566677774 553 345689998753 3344445554 5667877853 455789999999999 6
Q ss_pred CCCCcCCCcCCCCCCccCCCCCccCcCCCCCCCCCCCCcccCCCceecCccccCCCCCCCCCCcc--cccCCC-------
Q psy16054 110 DKQTCDWKAKVTNCNQLDRPRKVLPILKTDEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDE--NACSVE------- 180 (563)
Q Consensus 110 ~~~~CD~~~~v~dC~d~sde~~~~p~~~~~~~~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~DgsDE--~~C~~~------- 180 (563)
..++|| ++.||.|+|||.+|.. ..|.+.+|+|.+|+||+..|+|||..||.||||| .+|...
T Consensus 103 ~~~~Cd---g~~dC~dgsDE~~C~~------~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~ 173 (699)
T 1n7d_A 103 RQFVCD---SDRDCLDGSDEASCPV------LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDS 173 (699)
T ss_dssp CCCTTC---SSCCSSSSCSSSSCCC------CCCCSSCCCCSSSCCCCTTSTTCSSCCSSSSSSSSCSSSSCCCCCSSCC
T ss_pred HHHcCC---CcCcCCCCCccCCcCc------cccCccccCCCCCcccchhcccCCCCcCCCCcccccccCCCcccccCCC
Confidence 677899 8899999999998743 3699999999999999999999999999999999 889531
Q ss_pred -CCCCCCCCCCCCCCCCCCc--------------------------ccCCCCCcccCCCCCCCCCCc
Q psy16054 181 -QDPNRAPDCDPTQCALPDC--------------------------FCSADGTRIPGGIEPNQVPQM 220 (563)
Q Consensus 181 -~~p~~~~~C~~~~C~~p~~--------------------------~c~~~g~ciP~~~~~~~~pq~ 220 (563)
.++...+.|.++.|+...+ |-|.+|+|||+++.|+..+.-
T Consensus 174 ~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC 240 (699)
T 1n7d_A 174 SPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDC 240 (699)
T ss_dssp CCSCSSSCCCSSSCCCSTTCTTSSSCCSTTSCSSCSCCCCCCCSSEEESSSSCEEETTCCSSSCCCS
T ss_pred CCCCCcceecCCCceEechhccCCCCCCCCCcccccCCCcccCCCcEecCCCceeeeecccCCCCCC
Confidence 2334556776666654332 334567788888888777764
No 18
>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A*
Probab=99.65 E-value=1.9e-16 Score=175.11 Aligned_cols=125 Identities=10% Similarity=0.082 Sum_probs=101.7
Q ss_pred CCceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccC---------------------CCHHHHHHHHHcC
Q psy16054 218 PQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKY---------------------TNYASVQELHRKG 276 (563)
Q Consensus 218 pq~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~---------------------~~y~~v~~i~~~G 276 (563)
++.|+||||||+.+. +..+++||++ +++||||||++.+ .++++|++|.+.|
T Consensus 69 ~K~V~LTFDDGy~d~-y~~AlPILkk-------ygvpATfFVig~~i~~~~~~~~~~~~~~~~~~~~lsw~qlrem~~sG 140 (618)
T 4f9d_A 69 EKAVVLTFDDGYQSF-YTRVFPILQA-------FQWPAVWAPVGSWVDTPADKQVKFGDELVDREYFATWQQVREVARSR 140 (618)
T ss_dssp TTEEEEEEEETBHHH-HHTHHHHHHH-------HTCCEEEEECHHHHTSCTTSCEEETTEEECGGGBCCHHHHHHHHHHT
T ss_pred CCEEEEEEecCCccc-HHHHHHHHHH-------cCCCEEEEEecccccCCcccccccccccccccccCCHHHHHHHHHCC
Confidence 578999999999764 6667899975 7899999998753 2579999999999
Q ss_pred -CeecccCCC-CCCCcC---------CCC---------CCC----HHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccc
Q psy16054 277 -HEISVFSLT-HKDDPK---------YWS---------GGS----YDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLR 332 (563)
Q Consensus 277 -HEIa~H~~~-H~~~~~---------~~~---------~~s----~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~ 332 (563)
||||+||++ |..+.. ..+ ..| .+++++||.+++++|++.+|. .+..||+|||.
T Consensus 141 ~~EIGsHT~shH~~l~~~p~G~~~Pa~l~r~~~~~~~~~es~~e~~~~i~~EL~~Sk~~Le~~lG~---~~~~FayPyG~ 217 (618)
T 4f9d_A 141 LVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTKVEV---NPHVFVWPYGE 217 (618)
T ss_dssp SEEECBCCSSCCSEEECSTTCCEEEGGGSCCEETTTTEECCHHHHHHHHHHHHHHHHHHHHHHHCC---CCCEEECGGGC
T ss_pred CcEEeecccccccccccccccccccchhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEcCCCC
Confidence 599999998 764310 000 023 367889999999999999885 47899999999
Q ss_pred cChhhHHHHHHHcCCeEEeecC
Q psy16054 333 VGGNKQFSMMTDQFFVYDASIT 354 (563)
Q Consensus 333 ~~~~~~~~~L~e~Gf~YDsS~~ 354 (563)
++. .++++++++||.+..+..
T Consensus 218 ~n~-~~~~~ake~Gy~~afTt~ 238 (618)
T 4f9d_A 218 ANG-IAIEELKKLGYDMFFTLE 238 (618)
T ss_dssp CCH-HHHHHHHHTTCCEEECCC
T ss_pred CCH-HHHHHHHHcCCEEEEEec
Confidence 995 799999999999988774
No 19
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.64 E-value=2.1e-16 Score=130.26 Aligned_cols=73 Identities=36% Similarity=0.704 Sum_probs=64.8
Q ss_pred cCcccCCCCceecCCCCCcCCCcCCCCCCccCCC-CCccCcCCCCCCCCCC-CCcccCCCceecCccccCCCCCCCCCCc
Q psy16054 96 LKQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRP-RKVLPILKTDEPVCPE-GKLSCGNGECIDKTLFCDDKPDCKDESD 173 (563)
Q Consensus 96 ~~~~~C~~G~~~~~~~~~CD~~~~v~dC~d~sde-~~~~p~~~~~~~~C~~-~~f~C~~G~Ci~~~~~Cdg~~DC~DgsD 173 (563)
+.+|+|.+|.|| +..|+|| |+.||.|+||| .+|.. ..|.+ .+|+|.+|+||+..|+|||..||.||||
T Consensus 7 ~~~f~C~~g~Ci-~~~~~CD---g~~DC~DgsDE~~~C~~------~~C~~~~~f~C~~g~CI~~~~~CDG~~DC~DgSD 76 (82)
T 2fyj_A 7 PNQFSCASGRCI-PISWTCD---LDDDCGDRSDESASCAY------PTCFPLTQFTCNNGRCININWRCDNDNDCGDNSD 76 (82)
T ss_dssp TTEEETTSSCEE-ETTSSSS---CSSSSCSTTTTTSSCCC------SSSCSSSEEECTTSCEEETTCBSSSSBCCSSSSS
T ss_pred CCceEeCCCCEE-eccccCC---CcccCCCcccccccccc------ccCCCCCceECCCCCeEcHHHccCCCCcCCCCcc
Confidence 568999999999 6677899 88999999999 66642 36864 8999999999999999999999999999
Q ss_pred ccccC
Q psy16054 174 ENACS 178 (563)
Q Consensus 174 E~~C~ 178 (563)
|.+|.
T Consensus 77 E~~C~ 81 (82)
T 2fyj_A 77 EAGCS 81 (82)
T ss_dssp CSCCC
T ss_pred ccCCC
Confidence 99884
No 20
>4hd5_A Polysaccharide deacetylase; TIM barrel, hydrolase; 1.90A {Bacillus cereus}
Probab=99.64 E-value=4e-16 Score=161.40 Aligned_cols=122 Identities=15% Similarity=0.271 Sum_probs=98.4
Q ss_pred CCCceEEeecCCcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccC------CCHHHHHHHHHcC-CeecccCCCCCCC
Q psy16054 217 VPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKY------TNYASVQELHRKG-HEISVFSLTHKDD 289 (563)
Q Consensus 217 ~pq~V~lTFDD~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~------~~y~~v~~i~~~G-HEIa~H~~~H~~~ 289 (563)
+++.|+||||||+.+. +. +.+||++ .+..+++++|||||.+.. +++++|++|.+.| ||||+||++|..+
T Consensus 196 p~K~V~LTFDDGy~d~-y~-A~PILkk--~~~~~~~~~AT~Fvi~~~i~~~~~Lsw~qIrem~~~G~~eIGsHT~sH~~L 271 (360)
T 4hd5_A 196 VNKPIFVTFDDGMKNN-MN-AFRVLQK--LKDDTFKPAATEYMIVDNVDVEGALSTSEIKEMVDSGIFSVQSHTATHADL 271 (360)
T ss_dssp SSSEEEEEEEECBTTH-HH-HHHHHHH--HCCSSCCCCEEEEECGGGTTSTTBCCHHHHHHHHHTTSEEEEECCSSCCCG
T ss_pred CCCeEEEEEeCCCCcH-HH-HHHHHHH--hcccccccceEEEEEecccccccCCCHHHHHHHHHcCCceeeccCCccccc
Confidence 4567999999998775 44 4578864 233568899999998764 4789999999999 7999999999987
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeEEeec
Q psy16054 290 PKYWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASI 353 (563)
Q Consensus 290 ~~~~~~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~YDsS~ 353 (563)
. .++. +++||.+++++|++.+|. .+..|++|||.++. .+++++++ ||.+..+.
T Consensus 272 ~----~ls~--~e~EI~~Sk~~Le~~lG~---~v~~FAYPyG~yn~-~v~~~ak~-gy~~AfTt 324 (360)
T 4hd5_A 272 P----KITN--YEEELKGSKEKLEKITGK---PVIAIAYXFGHVDD-KVVTETKK-YYQFATTT 324 (360)
T ss_dssp G----GCSC--HHHHHHHHHHHHHHHHSS---CCCEEECGGGCCCH-HHHHHHTT-TCSEEEEE
T ss_pred c----cCCH--HHHHHHHHHHHHHHHhCC---CCcEEEcCCCCCCH-HHHHHHHh-CCcEEEEe
Confidence 5 4554 457999999999998885 47899999999994 68888875 88876654
No 21
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.62 E-value=1.3e-16 Score=130.79 Aligned_cols=73 Identities=26% Similarity=0.618 Sum_probs=64.7
Q ss_pred cCcccCCCCceecCCCCCcCCCcCCCCCCccCCCCCccCcCCCCCCCCCCCCcccCCCceecCccccCCCCCCCCCCcc-
Q psy16054 96 LKQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLPILKTDEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDE- 174 (563)
Q Consensus 96 ~~~~~C~~G~~~~~~~~~CD~~~~v~dC~d~sde~~~~p~~~~~~~~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~DgsDE- 174 (563)
+.+|+|.+|.|| +..++|| ++.||.|+|||.+|.. ..|...+|+|.+|.||+..|+|||..||.|||||
T Consensus 5 ~~~F~C~~g~CI-~~~~~CD---g~~DC~DgSDE~~C~~------~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~ 74 (80)
T 2fcw_B 5 QAEFRCHDGKCI-SRQFVCD---SDRDCLDGSDEASCPV------LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 74 (80)
T ss_dssp TTEEECTTSCEE-EGGGTTS---SSCCSTTCTTTTTHHH------HHCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGC
T ss_pred CCccCCCCCCEE-eeecccC---CcccCCCccccccccc------ccCCceeeECCCCCEEecccccCCCcCCCCCCCcC
Confidence 568999999999 6677899 8999999999998743 2588999999999999999999999999999999
Q ss_pred -cccC
Q psy16054 175 -NACS 178 (563)
Q Consensus 175 -~~C~ 178 (563)
..|.
T Consensus 75 ~~~C~ 79 (80)
T 2fcw_B 75 PQRCR 79 (80)
T ss_dssp GGGC-
T ss_pred cccCC
Confidence 6663
No 22
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.61 E-value=9.1e-17 Score=184.46 Aligned_cols=191 Identities=24% Similarity=0.431 Sum_probs=12.7
Q ss_pred CCCccccc-cCCCCCC-CCceecCC-CCC-------CCCeeeCCCCCCCCc------cccceeeCCCCccccCCCCCCC-
Q psy16054 20 DDEPSVEQ-LCEGRPP-EEYFRLTI-EGD-------CRDVVRCDQAGENGI------TRLAGVRCPNGLAFDIDRQTCD- 82 (563)
Q Consensus 20 ~~~~~~~~-~C~~~~~-~~~f~~~~-~~~-------C~~~~~C~~~~~~~~------~~~~~~~Cp~Gl~~d~~~~~Cd- 82 (563)
.|++||.+ .|..+.+ .+.|.+.. .+. |+....|.++. ||. +...+|+|.+|.++... +.||
T Consensus 50 ~D~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgs-DE~~C~~~~C~~~~f~C~~g~Ci~~~-~~CDg 127 (791)
T 3m0c_C 50 QDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGS-DEQGCPPKTCSQDEFRCHDGKCISRQ-FVCDS 127 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccccCccCcCccccCCCCCCEeeccccCCCCcCcCCCc-ccCCccCccccCCeEECCCCCEECHH-HcCCC
Confidence 45566543 3433221 24566654 244 44556666774 553 34568999999876543 4554
Q ss_pred -----CCCCcCCCcc-ccccCcccCCCCceecCCCCCcCCCcCCCCCCccCCCC--CccCcC--CCCCCCCCCCCcccCC
Q psy16054 83 -----WKTNVKNCDL-LESLKQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPR--KVLPIL--KTDEPVCPEGKLSCGN 152 (563)
Q Consensus 83 -----~~~~v~~C~~-~~~~~~~~C~~G~~~~~~~~~CD~~~~v~dC~d~sde~--~~~p~~--~~~~~~C~~~~f~C~~ 152 (563)
+.+||.+|.. .+.+.+|+|.+|.|| +..|+|| ++.||.|+|||. .|.... ......|...+|+|.+
T Consensus 128 ~~dC~dgsDE~~C~~~~C~~~~f~C~~~~Ci-~~~~~Cd---g~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~ 203 (791)
T 3m0c_C 128 DRDCLDGSDEASCPVLTCGPASFQCNSSTCI-PQLWACD---NDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS 203 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCCcccccccccccccceeccCCCccc-cccccCC---CCCcCCCCCCcccccCCCccccCCCCCCCCCCcccccC
Confidence 5667777743 355789999999999 6677899 888999999996 553211 0022369999999999
Q ss_pred CceecCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCC----------------------------CCcccCCC
Q psy16054 153 GECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCAL----------------------------PDCFCSAD 204 (563)
Q Consensus 153 G~Ci~~~~~Cdg~~DC~DgsDE~~C~~~~~p~~~~~C~~~~C~~----------------------------p~~~c~~~ 204 (563)
|.||+..|+|||..||.|+|||.+|....+....+.|..+.|+. |..|-|.+
T Consensus 204 g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~~C~~~~~~~C~~ 283 (791)
T 3m0c_C 204 GECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHS 283 (791)
T ss_dssp ---------------------------------------------------------------------CCSTTCCCCTT
T ss_pred CceeccccccCCCCCCCCCCCCCCccccccCCCcceecCCceEecceecCChhccccccccCcccccccccCCCccccCC
Confidence 99999999999999999999999997544444455666555542 33444567
Q ss_pred CCcccCCCCCCC
Q psy16054 205 GTRIPGGIEPNQ 216 (563)
Q Consensus 205 g~ciP~~~~~~~ 216 (563)
|.||+..+.|+.
T Consensus 284 G~Ci~~~~~Cd~ 295 (791)
T 3m0c_C 284 GECITLDKVCNM 295 (791)
T ss_dssp SCCCCSSCCSCS
T ss_pred CcccccccccCC
Confidence 888887776643
No 23
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.58 E-value=1.1e-16 Score=183.61 Aligned_cols=130 Identities=25% Similarity=0.547 Sum_probs=0.0
Q ss_pred cceeeCCCCccccCCCCCCC------CCCCcCC--Cc-cccccCcccCCC--CceecCCCCCcCCCcCCCCCCccCCCCC
Q psy16054 63 LAGVRCPNGLAFDIDRQTCD------WKTNVKN--CD-LLESLKQISCPS--GLAFDVDKQTCDWKAKVTNCNQLDRPRK 131 (563)
Q Consensus 63 ~~~~~Cp~Gl~~d~~~~~Cd------~~~~v~~--C~-~~~~~~~~~C~~--G~~~~~~~~~CD~~~~v~dC~d~sde~~ 131 (563)
..+|+|.+|.++. ..++|| +.+||.. |. ..+.+.+|+|.+ |.|| +..|+|| ++.||.|+|||.+
T Consensus 26 ~~~f~C~~g~Ci~-~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci-~~~~~CD---g~~dC~dgsDE~~ 100 (791)
T 3m0c_C 26 RNEFQCQDGKCIS-YKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCI-PQFWRCD---GQVDCDNGSDEQG 100 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCccCCCCCCEEe-hhhcCCCCccCCCCCcccccccccCccCcCccccCCCCCCEe-eccccCC---CCcCcCCCcccCC
Confidence 3467777776553 334444 4556654 53 234578999987 8999 6778899 8889999999998
Q ss_pred ccCcCCCCCCCCCCCCcccCCCceecCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCC
Q psy16054 132 VLPILKTDEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPDCFCSADGTRIPGG 211 (563)
Q Consensus 132 ~~p~~~~~~~~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~DgsDE~~C~~~~~p~~~~~C~~~~C~~p~~~c~~~g~ciP~~ 211 (563)
|.+ ..|...+|+|.+|+||+..|+|||..||.|||||.+|.... |.+. .|.|.+|.|||..
T Consensus 101 C~~------~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~-------C~~~------~f~C~~~~Ci~~~ 161 (791)
T 3m0c_C 101 CPP------KTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT-------CGPA------SFQCNSSTCIPQL 161 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccC------ccccCCeEECCCCCEECHHHcCCCcccCCCCcccccccccc-------cccc------eeccCCCcccccc
Confidence 753 26999999999999999999999999999999999997653 4333 3444445555555
Q ss_pred CCCCC
Q psy16054 212 IEPNQ 216 (563)
Q Consensus 212 ~~~~~ 216 (563)
|.|+.
T Consensus 162 ~~Cdg 166 (791)
T 3m0c_C 162 WACDN 166 (791)
T ss_dssp -----
T ss_pred ccCCC
Confidence 55543
No 24
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.31 E-value=5e-13 Score=109.34 Aligned_cols=65 Identities=34% Similarity=0.776 Sum_probs=55.7
Q ss_pred CCCCCCcccCCCceecCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCCCC
Q psy16054 142 VCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPDCFCSADGTRIPGGIEPNQVPQ 219 (563)
Q Consensus 142 ~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~DgsDE~~C~~~~~p~~~~~C~~~~C~~p~~~c~~~g~ciP~~~~~~~~pq 219 (563)
.|.+.+|+|.+|+||+..|+|||..||.|||||.+|... .|.+. .|.|.+|+|||..|.|+..+.
T Consensus 2 ~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~~~-------~C~~~------~f~C~~g~Ci~~~~~CDg~~D 66 (80)
T 2fcw_B 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVL-------TCGPA------SFQCNSSTCIPQLWACDNDPD 66 (80)
T ss_dssp CCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTTHHHH-------HCCTT------EEECTTSCEEEGGGTTSSSCC
T ss_pred CCCCCccCCCCCCEEeeecccCCcccCCCcccccccccc-------cCCce------eeECCCCCEEecccccCCCcC
Confidence 488999999999999999999999999999999999643 45544 566678999999999987654
No 25
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.29 E-value=2e-12 Score=106.35 Aligned_cols=66 Identities=32% Similarity=0.644 Sum_probs=55.6
Q ss_pred CCCCCCcccCCCceecCccccCCCCCCCCCCcc-cccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCCCC
Q psy16054 142 VCPEGKLSCGNGECIDKTLFCDDKPDCKDESDE-NACSVEQDPNRAPDCDPTQCALPDCFCSADGTRIPGGIEPNQVPQ 219 (563)
Q Consensus 142 ~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~DgsDE-~~C~~~~~p~~~~~C~~~~C~~p~~~c~~~g~ciP~~~~~~~~pq 219 (563)
.|.+.+|+|.+|+||+..|+|||..||.||||| .+|... .|.+ ...|.|.+|+|||..|+|+....
T Consensus 4 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~~C~~~-------~C~~-----~~~f~C~~g~CI~~~~~CDG~~D 70 (82)
T 2fyj_A 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYP-------TCFP-----LTQFTCNNGRCININWRCDNDND 70 (82)
T ss_dssp SSCTTEEETTSSCEEETTSSSSCSSSSCSTTTTTSSCCCS-------SSCS-----SSEEECTTSCEEETTCBSSSSBC
T ss_pred CCCCCceEeCCCCEEeccccCCCcccCCCccccccccccc-------cCCC-----CCceECCCCCeEcHHHccCCCCc
Confidence 599999999999999999999999999999999 788643 4543 13677778999999999987654
No 26
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.11 E-value=3.7e-11 Score=83.39 Aligned_cols=36 Identities=47% Similarity=1.048 Sum_probs=34.2
Q ss_pred CCCCCcccCCCceecCccccCCCCCCCCCCcccccC
Q psy16054 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACS 178 (563)
Q Consensus 143 C~~~~f~C~~G~Ci~~~~~Cdg~~DC~DgsDE~~C~ 178 (563)
|...+|+|.+|+||+..|+|||..||.|||||.+|+
T Consensus 2 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp CCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CCCCceEcCCCCeechhhccCCCCCCCCCccccCCC
Confidence 788999999999999999999999999999999884
No 27
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=6.3e-11 Score=88.02 Aligned_cols=40 Identities=38% Similarity=0.875 Sum_probs=37.0
Q ss_pred CCCCCCCcccCCCceecCccccCCCCCCCCCCcccccCCC
Q psy16054 141 PVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVE 180 (563)
Q Consensus 141 ~~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~DgsDE~~C~~~ 180 (563)
+.|.+.+|+|.+|+||+..|+|||..||.|||||.+|..+
T Consensus 5 ~~C~~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~~~~~ 44 (52)
T 2m0p_A 5 ASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNST 44 (52)
T ss_dssp CSSCSSEEECTTCCEEETTSTTSSSCSSSSCHHHHSCCCC
T ss_pred CCCCCCceECCCCCEEecCccCCCCCCCCCCCccccchhh
Confidence 3699999999999999999999999999999999988653
No 28
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.03 E-value=1.5e-10 Score=82.66 Aligned_cols=38 Identities=37% Similarity=0.816 Sum_probs=35.1
Q ss_pred CCCCCCcccC-CCceecCccccCCCCCCCCCCcccccCC
Q psy16054 142 VCPEGKLSCG-NGECIDKTLFCDDKPDCKDESDENACSV 179 (563)
Q Consensus 142 ~C~~~~f~C~-~G~Ci~~~~~Cdg~~DC~DgsDE~~C~~ 179 (563)
.|...+|+|. +|.||+..|+|||..||.|||||.+|..
T Consensus 3 ~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~~ 41 (42)
T 1cr8_A 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG 41 (42)
T ss_dssp CSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCCC
T ss_pred CCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCCCC
Confidence 5889999998 5999999999999999999999998853
No 29
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.02 E-value=1.2e-10 Score=84.29 Aligned_cols=38 Identities=39% Similarity=0.897 Sum_probs=35.4
Q ss_pred CCCCCCCcccCCCceecCccccCCCCCCCCCCcccccC
Q psy16054 141 PVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACS 178 (563)
Q Consensus 141 ~~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~DgsDE~~C~ 178 (563)
+.|.+.+|+|.+|+||+..|+|||..||.|||||..|.
T Consensus 4 ~~C~~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~c~ 41 (45)
T 1d2l_A 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41 (45)
T ss_dssp CBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTTT
T ss_pred CcCCCCceEcCCCCeEehhhccCCCCCCCCCCCCCCCc
Confidence 36999999999999999999999999999999999873
No 30
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.6e-10 Score=82.97 Aligned_cols=38 Identities=34% Similarity=0.927 Sum_probs=35.4
Q ss_pred CCCCCCCcccCC-CceecCccccCCCCCCCCCCcccccC
Q psy16054 141 PVCPEGKLSCGN-GECIDKTLFCDDKPDCKDESDENACS 178 (563)
Q Consensus 141 ~~C~~~~f~C~~-G~Ci~~~~~Cdg~~DC~DgsDE~~C~ 178 (563)
..|...+|+|.+ |+||+..|+|||..||.|||||.+|.
T Consensus 5 ~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (43)
T 2jm4_A 5 VKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG 43 (43)
T ss_dssp CSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSCC
T ss_pred CCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCCC
Confidence 369999999999 99999999999999999999999884
No 31
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=99.00 E-value=1.4e-10 Score=83.73 Aligned_cols=37 Identities=38% Similarity=0.911 Sum_probs=34.2
Q ss_pred CCCCCCcccCCCceecCccccCCCCCCCCCCcccccC
Q psy16054 142 VCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACS 178 (563)
Q Consensus 142 ~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~DgsDE~~C~ 178 (563)
.|...+|+|.+|+||+..|+|||..||.|||||.+|.
T Consensus 7 ~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 7 ECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp -CCTTEEECTTSCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CCCCCceEcCCCCEeChhhccCCCCCCCCCccccCCC
Confidence 6999999999999999999999999999999999884
No 32
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=98.96 E-value=3e-10 Score=79.73 Aligned_cols=36 Identities=36% Similarity=0.887 Sum_probs=33.6
Q ss_pred CCCCCcccCC--CceecCccccCCCCCCCCCCcccccC
Q psy16054 143 CPEGKLSCGN--GECIDKTLFCDDKPDCKDESDENACS 178 (563)
Q Consensus 143 C~~~~f~C~~--G~Ci~~~~~Cdg~~DC~DgsDE~~C~ 178 (563)
|++.+|+|.+ |+||+..|+|||..||.|||||.+|.
T Consensus 1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~ 38 (39)
T 3dpr_E 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38 (39)
T ss_dssp CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred CCCCceecCCCCCCEeCccccCCCcccCcCCcccccCC
Confidence 6778999997 89999999999999999999999885
No 33
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=98.96 E-value=2.5e-10 Score=83.59 Aligned_cols=37 Identities=43% Similarity=1.131 Sum_probs=34.9
Q ss_pred CCCCCCcccC-----CCceecCccccCCCCCCCCCCcccccC
Q psy16054 142 VCPEGKLSCG-----NGECIDKTLFCDDKPDCKDESDENACS 178 (563)
Q Consensus 142 ~C~~~~f~C~-----~G~Ci~~~~~Cdg~~DC~DgsDE~~C~ 178 (563)
.|.+.+|+|. +|+||+..|+|||..||.|||||.+|+
T Consensus 6 ~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~ 47 (47)
T 1k7b_A 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 47 (47)
T ss_dssp CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred CCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCCC
Confidence 6999999998 799999999999999999999999884
No 34
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=98.93 E-value=9.8e-10 Score=121.74 Aligned_cols=71 Identities=23% Similarity=0.561 Sum_probs=63.2
Q ss_pred CcccCCCCceecCCCCCcCCCcCCCCCCccCCCCCccCcCCCCCCCCCCCCcccCCCceecCccccCCCCCCCCCCcccc
Q psy16054 97 KQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLPILKTDEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENA 176 (563)
Q Consensus 97 ~~~~C~~G~~~~~~~~~CD~~~~v~dC~d~sde~~~~p~~~~~~~~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~DgsDE~~ 176 (563)
.+|+|.+|.|| +..++|| |+.||.|+|||..|. .|...+|+|.++.||+..++|||..||.|||||.+
T Consensus 207 ~~~~C~~~~ci-~~~~~Cd---g~~dC~d~sDE~~C~--------~c~~~~~~C~~~~C~~~~~~cdG~~dC~~gsDE~~ 274 (565)
T 2xrc_A 207 DFFQCVNGKYI-SQMKACD---GINDCGDQSDELCCK--------ACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVG 274 (565)
T ss_dssp --CBCTTSCBC-CTTSTTS---SSCCSSSSSSSSSBS--------SCSSSCEEETTTEEECGGGTTSSSCCSSSCTTSSS
T ss_pred CeeECCCCCcc-CHHHcCC---CcccCCCCccccccc--------ccCCCceecCCCcccCccccCCCcccCCCCccccC
Confidence 46999999999 6677899 899999999999763 48899999999999999999999999999999999
Q ss_pred cCC
Q psy16054 177 CSV 179 (563)
Q Consensus 177 C~~ 179 (563)
|..
T Consensus 275 C~~ 277 (565)
T 2xrc_A 275 CAG 277 (565)
T ss_dssp CC-
T ss_pred cCC
Confidence 964
No 35
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.91 E-value=4.4e-10 Score=81.02 Aligned_cols=36 Identities=36% Similarity=0.832 Sum_probs=34.3
Q ss_pred CCCCCCcccCCCceecCccccCCCCCCCCCCccccc
Q psy16054 142 VCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENAC 177 (563)
Q Consensus 142 ~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~DgsDE~~C 177 (563)
.|.+.+|+|.+|+||+..|+|||..||.|||||..|
T Consensus 4 ~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~ 39 (44)
T 1j8e_A 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp SSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred CCCCCceEeCCCCeEecCcccCCCCCCCCCCCCCCc
Confidence 589999999999999999999999999999999875
No 36
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.90 E-value=4.4e-10 Score=82.60 Aligned_cols=38 Identities=37% Similarity=0.944 Sum_probs=35.9
Q ss_pred CCCCCCcccCCC-ceecCccccCCCCCCCCCCcccccCC
Q psy16054 142 VCPEGKLSCGNG-ECIDKTLFCDDKPDCKDESDENACSV 179 (563)
Q Consensus 142 ~C~~~~f~C~~G-~Ci~~~~~Cdg~~DC~DgsDE~~C~~ 179 (563)
.|...+|+|.+| +||+..|+|||..||.|||||.+|..
T Consensus 6 ~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~~ 44 (48)
T 2i1p_A 6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44 (48)
T ss_dssp CCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSCS
T ss_pred CCCCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCCC
Confidence 689999999999 89999999999999999999999964
No 37
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.89 E-value=6.6e-10 Score=82.23 Aligned_cols=37 Identities=30% Similarity=0.760 Sum_probs=34.7
Q ss_pred CCCCCCcccC-CCceecCccccCCCCCCCCCCcccccC
Q psy16054 142 VCPEGKLSCG-NGECIDKTLFCDDKPDCKDESDENACS 178 (563)
Q Consensus 142 ~C~~~~f~C~-~G~Ci~~~~~Cdg~~DC~DgsDE~~C~ 178 (563)
.|.+.+|+|. +|+||+..|+|||..||.|||||..|.
T Consensus 6 ~C~~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (50)
T 2knx_A 6 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43 (50)
T ss_dssp TTCTTEEEETTTTEEEETTTTTSSSCCSTTCGGGSGGG
T ss_pred CCCCCcEEcCCCCeEcChhhcCCCCCCCCCCCcccccc
Confidence 6999999995 999999999999999999999999874
No 38
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=98.86 E-value=5.7e-10 Score=91.03 Aligned_cols=65 Identities=20% Similarity=0.408 Sum_probs=47.2
Q ss_pred CCCCCCCcccC-CCceecCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCcccCCC--CCcccCCCCC
Q psy16054 141 PVCPEGKLSCG-NGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPDCFCSAD--GTRIPGGIEP 214 (563)
Q Consensus 141 ~~C~~~~f~C~-~G~Ci~~~~~Cdg~~DC~DgsDE~~C~~~~~p~~~~~C~~~~C~~p~~~c~~~--g~ciP~~~~~ 214 (563)
..|.+.+|+|. +|.||+..|+|||..||.|||||..|..- +. ..+|.+. .|.+.+ +.||+..+..
T Consensus 7 ~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C--~~-~~~C~~~------~f~c~~~~~~ci~~~~~g 74 (80)
T 2kny_A 7 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGC--LY-NSTGSGS------GSGSTEELRVRLASHLRK 74 (80)
T ss_dssp CCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTC--SS-SSTTTTC------SSCHHHHHHHHTTTTTTT
T ss_pred CCCCCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCC--CC-CcccCcc------cchhhhHHHHHHHHHHHH
Confidence 36999999998 68999999999999999999999864210 00 1145443 455555 6788876654
No 39
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=98.85 E-value=6.2e-10 Score=81.49 Aligned_cols=38 Identities=42% Similarity=1.093 Sum_probs=35.3
Q ss_pred CCCCCCcccC-----CCceecCccccCCCCCCCCCCcccccCC
Q psy16054 142 VCPEGKLSCG-----NGECIDKTLFCDDKPDCKDESDENACSV 179 (563)
Q Consensus 142 ~C~~~~f~C~-----~G~Ci~~~~~Cdg~~DC~DgsDE~~C~~ 179 (563)
.|...+|+|. +|.||+..|+|||..||.|||||.+|..
T Consensus 4 ~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C~~ 46 (47)
T 1jrf_A 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46 (47)
T ss_dssp CCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHHHC
T ss_pred CCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccCCC
Confidence 5899999998 7899999999999999999999998853
No 40
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.83 E-value=2e-10 Score=110.18 Aligned_cols=52 Identities=27% Similarity=0.662 Sum_probs=47.1
Q ss_pred CCCCccCCCCCccCcCCCCCCCCCCCCccc--CCCceecCccccCCCCCCCCCCcccccCCC
Q psy16054 121 TNCNQLDRPRKVLPILKTDEPVCPEGKLSC--GNGECIDKTLFCDDKPDCKDESDENACSVE 180 (563)
Q Consensus 121 ~dC~d~sde~~~~p~~~~~~~~C~~~~f~C--~~G~Ci~~~~~Cdg~~DC~DgsDE~~C~~~ 180 (563)
.+|.+++||.+| ..|.+.+|+| .+|+||+..|+|||..||.|||||.+|+..
T Consensus 41 ~~c~d~sDE~~C--------~~C~~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~~~ 94 (215)
T 2gtl_O 41 GSLRHRVEELED--------PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLP 94 (215)
T ss_dssp HHHHHHHHHHSC--------CSSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCCCS
T ss_pred ccCCcchhhccC--------CCCCCcceeeCCCCCcCccccccCCCCCcCCCcccccCCCCC
Confidence 479999999876 2599999999 799999999999999999999999999764
No 41
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=98.41 E-value=8.8e-08 Score=106.05 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=59.2
Q ss_pred CcccCCCCceecCCCCCcCCCcCCCCCCccCCCCCccCcCCCCCCCCCCCCcccCCCceecCccccCCCCCCCCCCcccc
Q psy16054 97 KQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLPILKTDEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENA 176 (563)
Q Consensus 97 ~~~~C~~G~~~~~~~~~CD~~~~v~dC~d~sde~~~~p~~~~~~~~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~DgsDE~~ 176 (563)
..+.|+.+.+... .+.|| ...+|.+.+++ .|...+|+|.+|.||+..|+|||..||.|+|||.+
T Consensus 174 sl~~C~~~~~~~~-~h~~D---agV~C~~~~~~------------c~~~~~~~C~~~~ci~~~~~Cdg~~dC~d~sDE~~ 237 (565)
T 2xrc_A 174 SLAECTFTKRRTM-GYQDF---ADVVCYTQKAD------------SPMDDFFQCVNGKYISQMKACDGINDCGDQSDELC 237 (565)
T ss_dssp CGGGSEEECCCCC-SSCCC---CEEEBCCC---------------------CBCTTSCBCCTTSTTSSSCCSSSSSSSSS
T ss_pred chhhcccCccccc-ccccC---CceeccccccC------------CCCcCeeECCCCCccCHHHcCCCcccCCCCccccc
Confidence 4567766655532 23455 22256544321 13345699999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcccCCCCCccc
Q psy16054 177 CSVEQDPNRAPDCDPTQCALPDCFCSADGTRIP 209 (563)
Q Consensus 177 C~~~~~p~~~~~C~~~~C~~p~~~c~~~g~ciP 209 (563)
|.. ++...+.|....|+.+...|...-.|..
T Consensus 238 C~~--c~~~~~~C~~~~C~~~~~~cdG~~dC~~ 268 (565)
T 2xrc_A 238 CKA--CQGKGFHCKSGVCIPSQYQCNGEVDCIT 268 (565)
T ss_dssp BSS--CSSSCEEETTTEEECGGGTTSSSCCSSS
T ss_pred ccc--cCCCceecCCCcccCccccCCCcccCCC
Confidence 964 3444556666666666666654334443
No 42
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.31 E-value=2.2e-07 Score=89.18 Aligned_cols=39 Identities=46% Similarity=0.997 Sum_probs=35.4
Q ss_pred CCCCCCCcccCC--CceecCccccCCCCCCCCCCccc--ccCC
Q psy16054 141 PVCPEGKLSCGN--GECIDKTLFCDDKPDCKDESDEN--ACSV 179 (563)
Q Consensus 141 ~~C~~~~f~C~~--G~Ci~~~~~Cdg~~DC~DgsDE~--~C~~ 179 (563)
+.|.+.+|+|.+ |.||+..|+|||+.||.|||||. .|..
T Consensus 52 ~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~ 94 (217)
T 2gtl_M 52 HHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSL 94 (217)
T ss_dssp CCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCC
T ss_pred CCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCC
Confidence 469999999965 99999999999999999999997 7854
No 43
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.30 E-value=2.1e-07 Score=88.64 Aligned_cols=76 Identities=22% Similarity=0.432 Sum_probs=51.4
Q ss_pred CCCCCCCcccC--CCceecCccccCCCCCCCCCCccc--ccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCC
Q psy16054 141 PVCPEGKLSCG--NGECIDKTLFCDDKPDCKDESDEN--ACSVEQDPNRAPDCDPTQCALPDCFCSADGTRIPGGIEPNQ 216 (563)
Q Consensus 141 ~~C~~~~f~C~--~G~Ci~~~~~Cdg~~DC~DgsDE~--~C~~~~~p~~~~~C~~~~C~~p~~~c~~~g~ciP~~~~~~~ 216 (563)
+.|...+|+|+ +|.||+..|+|||+.||.|||||. +|... ..|.+.+.+ +-+.++.|+- .
T Consensus 51 ~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~------~tc~~~qF~----g~~~~d~C~k------r 114 (220)
T 2gtl_N 51 THCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTS------VVKAGNVFS----GTSTWHGCLA------R 114 (220)
T ss_dssp CSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGG------GGCTTCEEE----EEEEECSSCC------C
T ss_pred CCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCC------CccCCccee----eEecCChhhc------C
Confidence 36999999995 689999999999999999999996 88653 034433211 1233455532 2
Q ss_pred CCCceEEeecCCcCCC
Q psy16054 217 VPQMITITFNGAVNVD 232 (563)
Q Consensus 217 ~pq~V~lTFDD~~~~~ 232 (563)
-|.-+.|++.......
T Consensus 115 ~p~~~~i~Its~~r~~ 130 (220)
T 2gtl_N 115 EDHVTRITITASKRRK 130 (220)
T ss_dssp CSEEEEEEEEEEECCT
T ss_pred CCceEEEEEEeccccc
Confidence 3566667766655443
No 44
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.24 E-value=8e-07 Score=97.53 Aligned_cols=68 Identities=24% Similarity=0.561 Sum_probs=46.9
Q ss_pred CCCcc-CCCCCccCcCCCC-CCCCCCCCcccC-CCceecCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCC
Q psy16054 122 NCNQL-DRPRKVLPILKTD-EPVCPEGKLSCG-NGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCAL 196 (563)
Q Consensus 122 dC~d~-sde~~~~p~~~~~-~~~C~~~~f~C~-~G~Ci~~~~~Cdg~~DC~DgsDE~~C~~~~~p~~~~~C~~~~C~~ 196 (563)
.|... .+++.|.+...+. ...| .+|+|. +|+||+..|+|||+.||.|+|||.+|... ...|....++.
T Consensus 45 ~C~~~l~d~~~C~~~~~C~~~~~c--~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~c~~~-----~~~C~~~~~~~ 115 (537)
T 3ojy_B 45 PCNFSDKEVEDCVTNRPCRSQVRC--EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRI-----YKKCQHEMDQY 115 (537)
T ss_dssp CCCSCSEEEEECCCCCCCCCCSCC--SSEECTTTCCEECGGGTTSSSCCSSSSCTTSSCSSC-----SSCCSSCCBCC
T ss_pred cCccchhhhccCCCccccccCCCC--CccCcCCCCcEeeccccCCCCCCCCCccccccCCCC-----CCccccCcCCC
Confidence 34432 4445554432111 1257 799999 99999999999999999999999999753 23565554443
No 45
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.15 E-value=1.7e-06 Score=95.18 Aligned_cols=70 Identities=23% Similarity=0.486 Sum_probs=47.3
Q ss_pred CCCcc-CCCCCccCcCCCC-CCCCCCCCcccC-CCceecCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCC
Q psy16054 122 NCNQL-DRPRKVLPILKTD-EPVCPEGKLSCG-NGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQC 194 (563)
Q Consensus 122 dC~d~-sde~~~~p~~~~~-~~~C~~~~f~C~-~G~Ci~~~~~Cdg~~DC~DgsDE~~C~~~~~p~~~~~C~~~~C 194 (563)
.|... .+++.|.+...+. ...|. .+|+|. +|+||+..|+|||+.||.|+|||.+|... ......|....+
T Consensus 43 ~C~~~l~d~~~C~~~~~c~~~~~c~-~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE~~C~~~--~~~~~~C~~~~~ 115 (554)
T 3ojy_A 43 ICSGDIWDQASCSSSTTCVRQAQCG-QDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDV--RAIDEDCSQYEP 115 (554)
T ss_dssp CCCSCSEEEEECCCCCCC--CCCCS-SSEECSSSCCEECGGGTTSSSCCSSSCTTSSSCCSC--CCCCTTTTTSCB
T ss_pred CCCCccccccCCCCCCCCcccCCCC-CcCccCCCCEEcccccccCCcccCCCccccccCCCC--CCCccccccccc
Confidence 45543 4455554432221 12575 799999 99999999999999999999999999753 112235655433
No 46
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1
Probab=98.13 E-value=8.4e-07 Score=71.19 Aligned_cols=55 Identities=20% Similarity=0.442 Sum_probs=45.7
Q ss_pred ccccCCCCCCCCceecCCCCCCCCeeeCCCCCCCCccccceeeCCCCccccCCCCCCCCCCCcCCCc
Q psy16054 25 VEQLCEGRPPEEYFRLTIEGDCRDVVRCDQAGENGITRLAGVRCPNGLAFDIDRQTCDWKTNVKNCD 91 (563)
Q Consensus 25 ~~~~C~~~~~~~~f~~~~~~~C~~~~~C~~~~~~~~~~~~~~~Cp~Gl~~d~~~~~Cd~~~~v~~C~ 91 (563)
....|+. +|+|. ++.+|++||.|.+|. +.++.||.||.||+..+.|+|+++|. |.
T Consensus 8 ~~~~C~~---~G~~~--~p~dC~~fy~C~~G~------~~~~~Cp~Gl~Fn~~~~~Cd~p~~v~-C~ 62 (74)
T 1dqc_A 8 RYSPCLD---DGPNV--NLYSCCSFYNCHKCL------ARLENCPKGLHYNAYLKVCDWPSKAG-CT 62 (74)
T ss_dssp GGCCSSS---SEEEC--CSSCSSEEEEEETTE------EEEEECTTSCEEETTTTEEECTTTTT-CC
T ss_pred CCCcCCC---CCEeC--CcccCcceeECCCCc------EEEeECcCCCEEChhhCcCcCcccCC-CC
Confidence 3455775 47775 456899999999998 88999999999999999999998774 64
No 47
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=98.02 E-value=9.3e-07 Score=71.93 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=48.9
Q ss_pred cCcccCC-CCceecCCCCCcCCCcCCCCCCccCCCCCccCcCCCCCCCCCCCCcccCC--CceecCccccCC
Q psy16054 96 LKQISCP-SGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLPILKTDEPVCPEGKLSCGN--GECIDKTLFCDD 164 (563)
Q Consensus 96 ~~~~~C~-~G~~~~~~~~~CD~~~~v~dC~d~sde~~~~p~~~~~~~~C~~~~f~C~~--G~Ci~~~~~Cdg 164 (563)
+.+|+|. +|.|| +..|+|| |+.||.|+|||..|..-. ...+|.+.+|+|.+ +.||+..+....
T Consensus 11 ~~~f~C~~~g~CI-p~~~~CD---g~~DC~DgsDE~~~~~C~--~~~~C~~~~f~c~~~~~~ci~~~~~gLr 76 (80)
T 2kny_A 11 PSSFSCPGTHVCV-PERWLCD---GDKDCADGADESIAAGCL--YNSTGSGSGSGSTEELRVRLASHLRKLR 76 (80)
T ss_dssp SSEEECTTSSCEE-EHHHHTT---SSCCSSSSTTTSGGGTCS--SSSTTTTCSSCHHHHHHHHTTTTTTTTS
T ss_pred CCceecCCCCeEc-ChhhcCC---CCCCCCCCCccccccCCC--CCcccCcccchhhhHHHHHHHHHHHHHH
Confidence 5689998 68999 6677899 899999999998532110 12379999999998 789998876643
No 48
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
Probab=97.70 E-value=0.00038 Score=77.98 Aligned_cols=199 Identities=15% Similarity=0.105 Sum_probs=126.8
Q ss_pred chHHHHHhccCCCCCCCCCCceEEEEeccCC------CH---HHHHHHHHcC-CeecccCCCCCCCcCCCCCCCHHHHHH
Q psy16054 234 SDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT------NY---ASVQELHRKG-HEISVFSLTHKDDPKYWSGGSYDDWLA 303 (563)
Q Consensus 234 ~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~------~y---~~v~~i~~~G-HEIa~H~~~H~~~~~~~~~~s~~~~~~ 303 (563)
|..++++|++ .+ +++.||.+++... ++ +.++++.++| +||..++|+|..++ -++.+++++
T Consensus 31 Y~pll~ll~~---~~---~~k~~~~~s~~ll~~l~~~~p~l~~~ik~l~~~G~vE~l~~~~~Hpi~~----l~p~e~~~~ 100 (659)
T 1k1x_A 31 YRPFMEILEE---FP---EMKVNVHFSGPLLEWIEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLA----AIPKEDRLV 100 (659)
T ss_dssp HHHHHHHHTT---CT---TCCEEEEECHHHHHHHHHHCHHHHHHHHHHHHTTCEEEEBCCTTCCCGG----GSCHHHHHH
T ss_pred HHHHHHHHHh---CC---CcEEEEEccHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEccCccccccc----CCCHHHHHH
Confidence 3334566643 12 4899999988742 22 6788999999 59999999998875 257889999
Q ss_pred HHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHHHcCCeEEeecCCCC---C---CCCccceeccCCCCCCcCC
Q psy16054 304 EMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITASL---G---RVPIWPYTLYFRMPHKCNG 377 (563)
Q Consensus 304 Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~YDsS~~~~~---~---~~p~wPytld~~~p~~c~~ 377 (563)
+|...++.++ ..|. .++|+..|-..++. .+.++|++.||.|-..-.... + ...+-||....
T Consensus 101 QI~~g~~~~~-~FG~---~P~G~WlPE~~ys~-~l~~iL~~~Gi~y~~td~~~~~~~~~~p~~~~~py~~~~-------- 167 (659)
T 1k1x_A 101 QIEMLKDYAR-KLGY---DAKGVWLTERVWQP-ELVKSLREAGIEYVVVDDYHFMSAGLSKEELFWPYYTED-------- 167 (659)
T ss_dssp HHHHHHHHHH-HTTC---CCCEEECGGGCBCT-THHHHHHHTTCCEEEEEHHHHHHHTCCGGGCSSCEEEEE--------
T ss_pred HHHHHHHHHH-HcCC---CCCEEECcccccCh-hHHHHHHHcCCcEEEECchhhccCCCCchhcccceEecC--------
Confidence 9999999999 7785 58999999999995 699999999999875542210 0 12244553221
Q ss_pred CCCCCCCCCCCcEEEeccc-cccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHccCCcce-EEee-----
Q psy16054 378 NAHNCPSKSHPTWEMVMNE-LDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNRAPL-GLHF----- 450 (563)
Q Consensus 378 ~~~pcp~~~~~lweiP~~~-l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~nrap~-~l~l----- 450 (563)
....|-.++.+. |.+ .. ...+++.+.++|... ......++ .+.+
T Consensus 168 -------~g~~i~vf~rd~~Lsd-~i-----------------~f~~a~~~~~~L~~~----~~~~~~~lV~i~~DgE~f 218 (659)
T 1k1x_A 168 -------GGEVITVFPIDEKLRY-LI-----------------PFRPVKKTIEYLESL----TSDDPSKVAVFHDDGEKF 218 (659)
T ss_dssp -------TTEEEEEEEECHHHHH-HT-----------------TTSCHHHHHHHHHTT----CCSCTTCEEEEEEEGGGT
T ss_pred -------CCcEEEEEEecCcchh-cc-----------------CCccHHHHHHHHHHh----hcCCCCCEEEEEeCHHHc
Confidence 011144445432 211 11 112456566655221 11122333 3333
Q ss_pred -cc----ccccCchhHHHHHHHHHHHHHcCCCeEEEeHHHHHH
Q psy16054 451 -HA----SWLKSKKEFKDELIKFIEEMLDRNDVYFVTMLQVIQ 488 (563)
Q Consensus 451 -H~----~~l~g~p~r~~al~~fl~~i~~~~dVwfvT~~ei~~ 488 (563)
|- +|+.+ +. .|+.|++.+...++|-++|.+|+++
T Consensus 219 Ghw~~t~~w~~g-~~---fL~~l~~~l~~~~~i~~~t~se~L~ 257 (659)
T 1k1x_A 219 GVWPGTYEWVYE-KG---WLREFFDAITSNEKINLMTYSEYLS 257 (659)
T ss_dssp TTSTTHHHHHTT-TC---HHHHHHHHHHHCTTEEECCHHHHHH
T ss_pred CCCCcccCccCc-HH---HHHHHHHHHhhCCCEEEEcHHHHHH
Confidence 31 15443 33 3777888887788999999999998
No 49
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=97.70 E-value=1.8e-06 Score=82.81 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=50.0
Q ss_pred ccCcccC--CCCceecCCCCCcCCCcCCCCCCccCCCCCccCcCCCCCCCCCCCCcccCCCceecCccccCCCCCCCCCC
Q psy16054 95 SLKQISC--PSGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLPILKTDEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDES 172 (563)
Q Consensus 95 ~~~~~~C--~~G~~~~~~~~~CD~~~~v~dC~d~sde~~~~p~~~~~~~~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~Dgs 172 (563)
.+.+|+| .+|.|| +..|+|| |..||.|+|||.+|.. +.|.+.+|+| ++ ++. .|.+.+
T Consensus 56 ~~~~F~C~~~~g~CI-p~~~~CD---G~~DC~DgSDE~~C~~------~~C~~~~F~c-----~~-----~~~-~C~~~~ 114 (215)
T 2gtl_O 56 DEHEHQCGGDDPQCI-SKLFVCD---GHNDCRNGEDEKDCTL------PTKAGDKFIG-----DV-----CFD-HCTKRR 114 (215)
T ss_dssp CTTEEECCSSSCCEE-EGGGTTS---SSCCSSSCHHHHCCCC------SSCTTCEEEE-----EE-----EEE-SSCSSC
T ss_pred CCcceeeCCCCCcCc-cccccCC---CCCcCCCcccccCCCC------CCcCCCceee-----eE-----CCC-cccCCC
Confidence 4578999 799999 6677899 8999999999998743 3699999998 22 222 388888
Q ss_pred cccccCC
Q psy16054 173 DENACSV 179 (563)
Q Consensus 173 DE~~C~~ 179 (563)
++..|..
T Consensus 115 ~~~~c~~ 121 (215)
T 2gtl_O 115 PEHMTLA 121 (215)
T ss_dssp CSEEEEE
T ss_pred CCCceee
Confidence 8887753
No 50
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=97.70 E-value=1.3e-05 Score=55.14 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=28.9
Q ss_pred cCcccCCCCceecCCCCCcCCCcCCCCCCccCCCCCc
Q psy16054 96 LKQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKV 132 (563)
Q Consensus 96 ~~~~~C~~G~~~~~~~~~CD~~~~v~dC~d~sde~~~ 132 (563)
..+|+|.+|.|| +..++|| |+.||.|+|||.+|
T Consensus 4 ~~~f~C~~g~Ci-~~~~~CD---g~~DC~DgsDE~~C 36 (37)
T 1ajj_A 4 AFEFHCLSGECI-HSSWRCD---GGPDCKDKSDEENC 36 (37)
T ss_dssp TTCEECTTSCEE-CGGGTTS---SSCCSTTCGGGTTC
T ss_pred CCceEcCCCCee-chhhccC---CCCCCCCCccccCC
Confidence 468999999999 5677899 89999999999865
No 51
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=97.66 E-value=3.4e-05 Score=53.77 Aligned_cols=33 Identities=18% Similarity=0.426 Sum_probs=28.8
Q ss_pred cCcccCCC--CceecCCCCCcCCCcCCCCCCccCCCCCc
Q psy16054 96 LKQISCPS--GLAFDVDKQTCDWKAKVTNCNQLDRPRKV 132 (563)
Q Consensus 96 ~~~~~C~~--G~~~~~~~~~CD~~~~v~dC~d~sde~~~ 132 (563)
+.+|+|.+ |.|| +..|+|| ++.||.|+|||..|
T Consensus 3 ~~~f~C~~~~g~Ci-p~~~~CD---g~~DC~dgsDE~~C 37 (39)
T 3dpr_E 3 IHEISCGAHSTQCI-PVSWRCD---GENDCDSGEDEENC 37 (39)
T ss_dssp TTTCCCSSSSSCCC-CTTSSSS---SSCCSTTTTTSTTC
T ss_pred CCceecCCCCCCEe-CccccCC---CcccCcCCcccccC
Confidence 46899987 8999 6778899 88999999999865
No 52
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=97.64 E-value=3e-05 Score=54.94 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=29.0
Q ss_pred cCcccCC-CCceecCCCCCcCCCcCCCCCCccCCCCCcc
Q psy16054 96 LKQISCP-SGLAFDVDKQTCDWKAKVTNCNQLDRPRKVL 133 (563)
Q Consensus 96 ~~~~~C~-~G~~~~~~~~~CD~~~~v~dC~d~sde~~~~ 133 (563)
..+|+|. +|.|| +..++|| |+.||.|+|||.+|.
T Consensus 6 ~~~F~C~~~g~CI-~~~~~CD---g~~DC~DgSDE~~C~ 40 (42)
T 1cr8_A 6 TDEFQCRLDGLCI-PLRWRCD---GDTDCMDSSDEKSCE 40 (42)
T ss_dssp TTCEECTTTCCEE-CGGGSSS---SSCCSSSSTTTTTCC
T ss_pred CCceEeCCCCeEc-ChhhcCC---CCcCCCCCCcccCCC
Confidence 5689998 59999 6677899 899999999998764
No 53
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=97.54 E-value=3.1e-05 Score=55.47 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=28.9
Q ss_pred cCcccCCCCceecCCCCCcCCCcCCCCCCccCCCCCc
Q psy16054 96 LKQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKV 132 (563)
Q Consensus 96 ~~~~~C~~G~~~~~~~~~CD~~~~v~dC~d~sde~~~ 132 (563)
..+|+|.+|.|| +..++|| ++.||.|+|||.+|
T Consensus 10 ~~~f~C~~g~CI-~~~~~CD---g~~DC~DgSDE~~C 42 (44)
T 3a7q_B 10 KDQFQCRNERCI-PSVWRCD---EDDDCLDHSDEDDC 42 (44)
T ss_dssp TTEEECTTSCEE-EGGGTTS---SSCCSSSSTTTSCC
T ss_pred CCceEcCCCCEe-ChhhccC---CCCCCCCCccccCC
Confidence 468999999999 5667899 89999999999865
No 54
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=97.54 E-value=2.1e-05 Score=57.42 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=30.1
Q ss_pred ccCcccCCCC-ceecCCCCCcCCCcCCCCCCccCCCCCcc
Q psy16054 95 SLKQISCPSG-LAFDVDKQTCDWKAKVTNCNQLDRPRKVL 133 (563)
Q Consensus 95 ~~~~~~C~~G-~~~~~~~~~CD~~~~v~dC~d~sde~~~~ 133 (563)
...+|+|.+| .|| +..++|| ++.||.|+|||.+|.
T Consensus 8 ~~~~F~C~~g~~CI-~~~~~CD---G~~DC~DgSDE~~C~ 43 (48)
T 2i1p_A 8 TSAQFKCADGSSCI-NSRYRCD---GVYDCRDNSDEAGCP 43 (48)
T ss_dssp CSSSEECSSSSCEE-CGGGSSS---SSCCSSSSHHHHSSC
T ss_pred CCCeeECCCCCEeC-CHhhcCC---CCCCCCCCcccccCC
Confidence 3568999999 799 6677899 899999999998764
No 55
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=97.53 E-value=3.6e-05 Score=54.81 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=28.8
Q ss_pred cCcccCCC-CceecCCCCCcCCCcCCCCCCccCCCCCc
Q psy16054 96 LKQISCPS-GLAFDVDKQTCDWKAKVTNCNQLDRPRKV 132 (563)
Q Consensus 96 ~~~~~C~~-G~~~~~~~~~CD~~~~v~dC~d~sde~~~ 132 (563)
..+|+|.+ |.|| +..++|| ++.||.|+|||.+|
T Consensus 9 ~~~f~C~~~g~CI-~~~~~CD---g~~DC~DgSDE~~C 42 (43)
T 2jm4_A 9 LGYFPCGNITKCL-PQLLHCN---GVDDCGNQADEDNC 42 (43)
T ss_dssp TTEEECSSSSCEE-EGGGTTS---SCCCSSSCCTTSSC
T ss_pred CCeeECCCCCeEc-CHhhccC---CCCCCCCCcccCCC
Confidence 46899998 9999 5677899 89999999999865
No 56
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=97.52 E-value=2.2e-05 Score=58.15 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=30.1
Q ss_pred cCcccCCCCceecCCCCCcCCCcCCCCCCccCCCCCccC
Q psy16054 96 LKQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLP 134 (563)
Q Consensus 96 ~~~~~C~~G~~~~~~~~~CD~~~~v~dC~d~sde~~~~p 134 (563)
+.+|+|.+|.|| +..|+|| |+.||.|+|||.++..
T Consensus 9 ~~~F~C~nG~CI-p~~~~CD---G~~DC~DgSDE~~~~~ 43 (52)
T 2m0p_A 9 DTQYTCDNHQCI-SKNWVCD---TDNDCGDGSDEKNCNS 43 (52)
T ss_dssp SSEEECTTCCEE-ETTSTTS---SSCSSSSCHHHHSCCC
T ss_pred CCceECCCCCEE-ecCccCC---CCCCCCCCCccccchh
Confidence 568999999999 5677899 8999999999987643
No 57
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=97.50 E-value=3.5e-05 Score=55.44 Aligned_cols=33 Identities=12% Similarity=0.345 Sum_probs=29.0
Q ss_pred cCcccCCCCceecCCCCCcCCCcCCCCCCccCCCCCc
Q psy16054 96 LKQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKV 132 (563)
Q Consensus 96 ~~~~~C~~G~~~~~~~~~CD~~~~v~dC~d~sde~~~ 132 (563)
..+|+|.+|.|| +..++|| |+.||.|+|||..|
T Consensus 8 ~~~F~C~~g~CI-~~~~~CD---G~~DC~DgSDE~~c 40 (45)
T 1d2l_A 8 PGEFACANSRCI-QERWKCD---GDNDCLDNSDEAPA 40 (45)
T ss_dssp BTCEEETTTEEE-CGGGTTT---SSCTTTTCSTTSTT
T ss_pred CCceEcCCCCeE-ehhhccC---CCCCCCCCCCCCCC
Confidence 568999999999 5677899 89999999999854
No 58
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=97.45 E-value=4.8e-05 Score=55.25 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=28.6
Q ss_pred cCcccCC-----CCceecCCCCCcCCCcCCCCCCccCCCCCc
Q psy16054 96 LKQISCP-----SGLAFDVDKQTCDWKAKVTNCNQLDRPRKV 132 (563)
Q Consensus 96 ~~~~~C~-----~G~~~~~~~~~CD~~~~v~dC~d~sde~~~ 132 (563)
+.+|+|. +|.|| +..|+|| ++.||.|+|||.+|
T Consensus 9 ~~~F~C~~~~~~~g~CI-p~~~~CD---G~~DC~DgSDE~~C 46 (47)
T 1k7b_A 9 PGQFRCSEPPGAHGECY-PQDWLCD---GHPDCDDGRDEWGC 46 (47)
T ss_dssp TTEECCSSCTTSCCCCE-EGGGSSC---SSCCSSSSTTTGGG
T ss_pred CCceEcCCCCCCCCcCC-CccccCC---CcCCCCCCcccCCC
Confidence 5689998 79999 5677899 89999999999865
No 59
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=97.27 E-value=8.6e-05 Score=54.62 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=28.7
Q ss_pred cCcccCC-CCceecCCCCCcCCCcCCCCCCccCCCCCc
Q psy16054 96 LKQISCP-SGLAFDVDKQTCDWKAKVTNCNQLDRPRKV 132 (563)
Q Consensus 96 ~~~~~C~-~G~~~~~~~~~CD~~~~v~dC~d~sde~~~ 132 (563)
+.+|+|. +|.|| +..|+|| ++.||.|+|||..|
T Consensus 9 ~~~F~C~~~g~CI-~~~~~CD---G~~DC~DgSDE~~C 42 (50)
T 2knx_A 9 PSSFSCPGTHVCV-PERWLCD---GDKDCADGADESIA 42 (50)
T ss_dssp TTEEEETTTTEEE-ETTTTTS---SSCCSTTCGGGSGG
T ss_pred CCcEEcCCCCeEc-ChhhcCC---CCCCCCCCCccccc
Confidence 5689995 99999 6677899 89999999999865
No 60
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=97.26 E-value=7.2e-05 Score=53.54 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=28.7
Q ss_pred cCcccCCCCceecCCCCCcCCCcCCCCCCccCCCCCc
Q psy16054 96 LKQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKV 132 (563)
Q Consensus 96 ~~~~~C~~G~~~~~~~~~CD~~~~v~dC~d~sde~~~ 132 (563)
+.+|+|.+|.|| +..++|| ++.||.|+|||..|
T Consensus 7 ~~~F~C~~g~CI-~~~~~CD---g~~DC~DgSDE~~~ 39 (44)
T 1j8e_A 7 STQFKCNSGRCI-PEHWTCD---GDNDCGDYSDETHA 39 (44)
T ss_dssp TTEEECTTSCEE-EGGGTTS---SSCCSSSSGGGSHH
T ss_pred CCceEeCCCCeE-ecCcccC---CCCCCCCCCCCCCc
Confidence 568999999999 5667899 89999999999753
No 61
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=97.25 E-value=8.6e-05 Score=53.90 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=29.0
Q ss_pred cCcccCC-----CCceecCCCCCcCCCcCCCCCCccCCCCCcc
Q psy16054 96 LKQISCP-----SGLAFDVDKQTCDWKAKVTNCNQLDRPRKVL 133 (563)
Q Consensus 96 ~~~~~C~-----~G~~~~~~~~~CD~~~~v~dC~d~sde~~~~ 133 (563)
+.+|+|. +|.|| +..|+|| ++.||.|+|||.+|.
T Consensus 7 ~~~F~C~~~~~~~~~CI-p~~~~CD---G~~DC~DgSDE~~C~ 45 (47)
T 1jrf_A 7 PGQFRCSEPPGAHGECY-PQDWLCD---GHPDCDDGRDEWGCG 45 (47)
T ss_dssp CCCSCSSSCSCCCTTTS-GGGGSSS---SSCCSSSSCTTHHHH
T ss_pred CCeeECCCCCCCCCeEc-CHhhcCC---CCcCCCCCcccccCC
Confidence 5689998 78999 6678899 899999999998663
No 62
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=97.21 E-value=0.00021 Score=83.35 Aligned_cols=37 Identities=41% Similarity=0.956 Sum_probs=34.0
Q ss_pred CCCCCCcccCCCceecCccccCCCCCCCCCCcccccCC
Q psy16054 142 VCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSV 179 (563)
Q Consensus 142 ~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~DgsDE~~C~~ 179 (563)
.|. .+|+|.+|+||+..|+|||+.||.|+|||.+|..
T Consensus 118 ~C~-~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~C~~ 154 (913)
T 3t5o_A 118 DCK-NKFRCDSGRCIARKLECNGENDCGDNSDERDCGR 154 (913)
T ss_dssp CCS-SEEECTTSCEEEGGGSSSSSCCSSSSGGGTTCSS
T ss_pred Ccc-cccccCCCceEccceecCCcccCCCccccccCCC
Confidence 364 6799999999999999999999999999999974
No 63
>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4
Probab=97.20 E-value=0.018 Score=62.70 Aligned_cols=80 Identities=14% Similarity=-0.010 Sum_probs=69.3
Q ss_pred HHHHHHHHcCC-eecccCCCCCCCcCCCCCCC--HHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChhhHHHHHH
Q psy16054 267 ASVQELHRKGH-EISVFSLTHKDDPKYWSGGS--YDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGNKQFSMMT 343 (563)
Q Consensus 267 ~~v~~i~~~GH-EIa~H~~~H~~~~~~~~~~s--~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~~~~~~L~ 343 (563)
...++|.+.|. ||-..+++|..++- +. +++.+.+|..+.+.+++..|. .|+|+..|-..++. .+.++|+
T Consensus 126 ~~~r~L~~~G~vEll~~~y~H~ilPL----l~d~~ed~~~QI~~g~~~~~~~FG~---~P~G~WlpE~a~~~-~l~~~l~ 197 (528)
T 2b5d_X 126 EGFKKYQETGKLEIVTCNATHAFLPL----YQMYPEVVNAQITVGVKNYEKHMKK---HPRGIWLAECGYYQ-GLDLYLA 197 (528)
T ss_dssp HHHHHHHHHTSEEEEEECTTCBCGGG----GTTCHHHHHHHHHHHHHHHHHHHSS---CCSEEECGGGCBCT-THHHHHH
T ss_pred HHHHHHHHCCCEEEEcCchhhHHHHh----cCCCHHHHHHHHHHHHHHHHHHhCC---CCCEEECchhccCh-hHHHHHH
Confidence 45688889996 99999999998863 45 789999999999999999985 58999999999995 6999999
Q ss_pred HcCCeEEeecC
Q psy16054 344 DQFFVYDASIT 354 (563)
Q Consensus 344 e~Gf~YDsS~~ 354 (563)
++||.|--.-.
T Consensus 198 ~~Gi~y~i~d~ 208 (528)
T 2b5d_X 198 QNNVEYFFVDS 208 (528)
T ss_dssp HTTCCEEEECT
T ss_pred HcCCeEEEECc
Confidence 99999976554
No 64
>3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A*
Probab=96.97 E-value=0.02 Score=62.26 Aligned_cols=79 Identities=18% Similarity=0.131 Sum_probs=67.2
Q ss_pred HHHHHHHHcCC-eecccCCCCCCCcCCCCCCC-HHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChh--------
Q psy16054 267 ASVQELHRKGH-EISVFSLTHKDDPKYWSGGS-YDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGN-------- 336 (563)
Q Consensus 267 ~~v~~i~~~GH-EIa~H~~~H~~~~~~~~~~s-~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~-------- 336 (563)
...++|.++|. ||-..+++|..++- +. .++++.+|....+.+++..|. +++|+..|-..+++.
T Consensus 125 ~~fr~L~~~G~iElit~~~tH~~lPL----l~~~e~~~~QI~~g~~~~~~~FG~---~P~G~WlpE~ay~~~~~~~~~~~ 197 (562)
T 3n98_A 125 GKLRELQDQGYVEVITSAATHGYLPL----LGRDEAIRAQIANGVATYEKHFGM---KPKGIWLPECAYRPAGEWELPGG 197 (562)
T ss_dssp HHHHHHHHTTSEEEEEECTTCBCGGG----CSCHHHHHHHHHHHHHHHHHHHSS---CCSBEECGGGCBCCSEEEECGGG
T ss_pred HHHHHHHHCCCEEEEcCCchhhHhhc----CCCHHHHHHHHHHHHHHHHHHcCC---CCCEEECcccceeCccccccccc
Confidence 46788889995 99999999998763 44 889999999999999999985 589999999999841
Q ss_pred ------hHHHHHHHcCCeEEee
Q psy16054 337 ------KQFSMMTDQFFVYDAS 352 (563)
Q Consensus 337 ------~~~~~L~e~Gf~YDsS 352 (563)
.+.++|+++||.|--.
T Consensus 198 ~~~~~~~i~~~L~~~Gi~y~~v 219 (562)
T 3n98_A 198 RKVKRQGIEKFLEEFGLRYFFV 219 (562)
T ss_dssp CEEEECCHHHHHHTTTCCEEEE
T ss_pred cccchhhHHHHHHHcCCeEEEE
Confidence 5999999999998644
No 65
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=96.97 E-value=0.00027 Score=67.29 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=38.6
Q ss_pred cCcccCC--CCceecCCCCCcCCCcCCCCCCccCCCC--CccCcCCCCCC-CCCCCC--cccCCCceec
Q psy16054 96 LKQISCP--SGLAFDVDKQTCDWKAKVTNCNQLDRPR--KVLPILKTDEP-VCPEGK--LSCGNGECID 157 (563)
Q Consensus 96 ~~~~~C~--~G~~~~~~~~~CD~~~~v~dC~d~sde~--~~~p~~~~~~~-~C~~~~--f~C~~G~Ci~ 157 (563)
..+|+|+ +|.|| +..|+|| |++||.|+|||. +|.. + +|.+.+ ++|.++.|+.
T Consensus 55 ~~eFqC~~~~g~CI-p~~wvCD---G~~DC~DGSDE~~~~C~~------~~tc~~~qF~g~~~~d~C~k 113 (220)
T 2gtl_N 55 KRTFQCGGNEQECI-SDLLVCD---GHKDCHNAHDEDPDVCDT------SVVKAGNVFSGTSTWHGCLA 113 (220)
T ss_dssp TTEEECCSSSCCEE-ETTTTTS---SSCCSTTCTTSCGGGGCG------GGGCTTCEEEEEEEECSSCC
T ss_pred CCccCcCCCCCcEe-CcceecC---CCCCCCCCCccCcccCCC------CCccCCcceeeEecCChhhc
Confidence 5689995 68999 6777899 999999999996 6632 2 566654 4566666643
No 66
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=96.67 E-value=0.011 Score=57.91 Aligned_cols=206 Identities=14% Similarity=0.079 Sum_probs=109.3
Q ss_pred ceEEeecC-CcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccCCCH-HHHHHHHHcCCeecccC----CCCCC--C--
Q psy16054 220 MITITFNG-AVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYTNY-ASVQELHRKGHEISVFS----LTHKD--D-- 289 (563)
Q Consensus 220 ~V~lTFDD-~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~~y-~~v~~i~~~GHEIa~H~----~~H~~--~-- 289 (563)
.|+|-.|| |.+....+ .|++ -+.+.||-|.-...+- +.++..+++||||-.|- ..... +
T Consensus 5 ~lAIVIDD~G~~~~~~~---~i~~--------Lp~pvT~Ai~P~~p~~~~~a~~A~~~G~EvllHlPMep~~~~~~~~gp 73 (245)
T 2nly_A 5 RAAIIIDDFGGDVKGVD---DFLT--------GEIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMPLEPKKGKISWLGP 73 (245)
T ss_dssp EEEEEEEEESSCCTTHH---HHHT--------CSSCEEEEECSSSTTHHHHHHHHHHTTCEEEEEEEECCC--------C
T ss_pred EEEEEEeCCCCCHHHHH---HHHc--------CCCCeEEEECCCCCCHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCc
Confidence 35666777 55544333 3442 4789999887765544 78889999999999993 22111 1
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccc---cCh---hhHHHHHHHcCCeEEeecCCCCCCCCcc
Q psy16054 290 PKYWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLR---VGG---NKQFSMMTDQFFVYDASITASLGRVPIW 363 (563)
Q Consensus 290 ~~~~~~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~---~~~---~~~~~~L~e~Gf~YDsS~~~~~~~~p~w 363 (563)
......++.++++.-|..+...+-. .+|+---.|+ .+. ..++++|++.|+-|--|..++.+- ..
T Consensus 74 ~~L~~~~s~~ei~~~l~~al~~vP~--------a~GvnNHmGS~~T~~~~~m~~vm~~l~~~gL~fvDS~Ts~~S~--a~ 143 (245)
T 2nly_A 74 SGITSNLSVGEVKSRVRKAFDDIPY--------AVGLNNHMGSKIVENEKIMRAILEVVKEKNAFIIDSGTSPHSL--IP 143 (245)
T ss_dssp CCBCTTCCHHHHHHHHHHHHHHSTT--------CCEEEEEECTTGGGCHHHHHHHHHHHHHTTCEEEECCCCSSCS--HH
T ss_pred ccCcCCCCHHHHHHHHHHHHHHCCC--------cEEEecccccchhcCHHHHHHHHHHHHHCCCEEEcCCCCcccH--HH
Confidence 1112367888777766555444322 3444332222 121 246788999998776666442110 00
Q ss_pred ceeccCCCCCCcCCCCCCCCCCCCCcEEEeccccccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHccCC
Q psy16054 364 PYTLYFRMPHKCNGNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNR 443 (563)
Q Consensus 364 Pytld~~~p~~c~~~~~pcp~~~~~lweiP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~nr 443 (563)
-....+|+| ..+--+ .||+ ...+.+.+.+.|.......... +
T Consensus 144 ~~A~~~gvp----------------~~~rdv-FLD~--------------------~~~~~~~I~~ql~~a~~~A~~~-G 185 (245)
T 2nly_A 144 QLAEELEVP----------------YATRSI-FLDN--------------------THSSRKEVIKNMRKLAKKAKQG-S 185 (245)
T ss_dssp HHHHHTTCC----------------EEECCE-ESCC--------------------TTCCHHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHcCCC----------------eEEeeE-ECCC--------------------CCCCHHHHHHHHHHHHHHHhhc-C
Confidence 000012211 111000 1211 0234555555555544443332 2
Q ss_pred cceEEeeccccccCchhHHHHHHHHHHHHHcCCCeEEEeHHHHHH
Q psy16054 444 APLGLHFHASWLKSKKEFKDELIKFIEEMLDRNDVYFVTMLQVIQ 488 (563)
Q Consensus 444 ap~~l~lH~~~l~g~p~r~~al~~fl~~i~~~~dVwfvT~~ei~~ 488 (563)
.-++| =| ++=. +..-+++|++++..+. ..+|-+|+.++++.
T Consensus 186 ~aIaI-Gh-p~p~-~~~Ti~aL~~~~~~l~-~~gi~LVpvS~l~~ 226 (245)
T 2nly_A 186 EPIGI-GH-VGVR-GDETYAGIRSMLDEFQ-AESIQLVPVSQLLP 226 (245)
T ss_dssp CCEEE-EE-CSTT-HHHHHHHHGGGHHHHH-HTTEEECCGGGGCC
T ss_pred cEEEE-EC-CCCC-chhHHHHHHHHhhHHh-hCCEEEEEHHHHhh
Confidence 22222 25 3211 1237899999999997 45899999999863
No 67
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Probab=96.37 E-value=0.00056 Score=73.27 Aligned_cols=50 Identities=22% Similarity=0.660 Sum_probs=0.0
Q ss_pred cccCCCCCCCCceecCCCCCCCCeeeCCCCCCCCccccceeeCCCCccccCCCCCCCCC
Q psy16054 26 EQLCEGRPPEEYFRLTIEGDCRDVVRCDQAGENGITRLAGVRCPNGLAFDIDRQTCDWK 84 (563)
Q Consensus 26 ~~~C~~~~~~~~f~~~~~~~C~~~~~C~~~~~~~~~~~~~~~Cp~Gl~~d~~~~~Cd~~ 84 (563)
...|+++. .|||.. +.+|++||.|.+|. ..++.||.|++||+..+.|+|+
T Consensus 396 ~~~C~~~~-~G~~~~--p~~C~~fy~C~~g~------~~~~~Cp~Gl~f~~~~~~Cd~p 445 (445)
T 1wb0_A 396 DTFCQGKA-DGLYPN--PRERSSFYSCAAGR------LFQQSCPTGLVFSNSCKCCTWN 445 (445)
T ss_dssp -----------------------------------------------------------
T ss_pred CCcCCCCC-CcccCC--CCCCCcccCCCCCC------EEeCCCcCCCEECcccCCCCCC
Confidence 35699875 477754 45899999999998 8899999999999999999985
No 68
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=96.32 E-value=0.00088 Score=64.18 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=41.0
Q ss_pred cCcccCCC--CceecCCCCCcCCCcCCCCCCccCCCC--CccCcCCCCCCCCCCCCcccCCCceecCccccCCCCCCCCC
Q psy16054 96 LKQISCPS--GLAFDVDKQTCDWKAKVTNCNQLDRPR--KVLPILKTDEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDE 171 (563)
Q Consensus 96 ~~~~~C~~--G~~~~~~~~~CD~~~~v~dC~d~sde~--~~~p~~~~~~~~C~~~~f~C~~G~Ci~~~~~Cdg~~DC~Dg 171 (563)
+.+|+|.+ |.|| +..|+|| |++||.|+|||. .|.... .|...+|.+ + .....|.++
T Consensus 56 ~~~F~C~~~~g~CI-~~~~~CD---G~~DC~DgSDE~~~~C~~~~-----~~~~~~~~g-----~------~~~~~C~~~ 115 (217)
T 2gtl_M 56 EHESECRGDVPECI-HDLLFCD---GEKDCRDGSDEDPETCSLNI-----THVGSSYTG-----L------ATWTSCEDL 115 (217)
T ss_dssp TTEEECSSSSCCEE-EGGGTTS---SSCCSSSSTTTSHHHHCCGG-----GCTTCEEEE-----E------EEESSSCSC
T ss_pred CCceecCCCCCcEe-chhhccC---CCCCCCCCCccccCcCCCCc-----ccCCccccc-----c------cCcccCCCC
Confidence 56899964 9999 5677899 899999999997 553210 222334443 1 223378888
Q ss_pred Ccccc
Q psy16054 172 SDENA 176 (563)
Q Consensus 172 sDE~~ 176 (563)
++|.-
T Consensus 116 ~pe~~ 120 (217)
T 2gtl_M 116 NPDHA 120 (217)
T ss_dssp CSEEE
T ss_pred CCCee
Confidence 88754
No 69
>4dwe_A Uncharacterized protein; hypothetical protein, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.01A {Bacteroides ovatus}
Probab=95.72 E-value=0.34 Score=49.94 Aligned_cols=179 Identities=16% Similarity=0.250 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHcCCeecccCCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHH-HhCCCCCcceEEecCccccChhhHHHHH
Q psy16054 264 TNYASVQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIER-FANISDGSVIGVRAPYLRVGGNKQFSMM 342 (563)
Q Consensus 264 ~~y~~v~~i~~~GHEIa~H~~~H~~~~~~~~~~s~~~~~~Ei~~~~~~l~~-~~gi~~~~~~G~R~P~l~~~~~~~~~~L 342 (563)
+.|..|++|.+-|..||.|.+.+.... .+.+.++++...++.+|.+ +.|+ ..+-+.-| +++... +-
T Consensus 176 l~W~~vkEm~nyG~~ia~Hdv~~~~~~-----~~~d~i~~~f~~aq~~I~~~l~Gr---~~Kml~eP----nGn~~Y-i~ 242 (480)
T 4dwe_A 176 LVWGNLQEMMNYGVSIAFHDLNLPDED-----KTEDKLLAQFPVAQSMIREKLNNR---TCKMLAEP----NGDKNY-IK 242 (480)
T ss_dssp CCHHHHHHHHTTTCEEEBCCCSSCGGG-----CSHHHHHHHHHHHHHHHHHHTTTC---CCCEEECC----TTCHHH-HH
T ss_pred CChHhHHHHHhcCcceEeccccccccc-----cchhhHHHHHHHHHHHHHHHhcCC---ccceeecC----CCchHH-HH
Confidence 477899999999999999999887642 3557788888888887654 4443 34555666 334333 22
Q ss_pred HHcCCeEEeecCCCCCCCCccceeccCCCCCCcCCCCCCCCCCCCCcEEEeccccccCCCCCCCCCCCCccccCCCCCCC
Q psy16054 343 TDQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQ 422 (563)
Q Consensus 343 ~e~Gf~YDsS~~~~~~~~p~wPytld~~~p~~c~~~~~pcp~~~~~lweiP~~~l~~~d~p~~~~~~~g~~~~d~~~~~~ 422 (563)
+.+++.=-..+.+..|...++|+.-+..+ .=..++=... +.| .| ....
T Consensus 243 aa~~~d~Iqtitaq~G~~kl~Pf~~~~dL----------------~kv~i~R~F~---~~~------~g-------~~~T 290 (480)
T 4dwe_A 243 AALRYDKIRTLCAQSGATKLYPFQENGDI----------------EQVVIERAFY---DPP------EG-------SGLT 290 (480)
T ss_dssp HHTTSTTCCEEEESSSCBCCCTTTCCSCC----------------TTEEEECBCC---CCC------TT-------SCCC
T ss_pred HHhcCCchhhhHhhcCCcccccccccCcH----------------HHheeehhcc---ccc------cc-------cccc
Confidence 23344333455555556667777533211 1111111100 001 01 1123
Q ss_pred ChHHHHHHHHHHHHHHHccCCcceEEeeccccccCchhHHHHHHHHHHHHHc------CCCeEEEeHHHHHH--HhhCCc
Q psy16054 423 TGEQFGRLLRHNFNRHFSTNRAPLGLHFHASWLKSKKEFKDELIKFIEEMLD------RNDVYFVTMLQVIQ--WMQNPT 494 (563)
Q Consensus 423 ~~~~~~~~l~~~F~~~y~~nrap~~l~lH~~~l~g~p~r~~al~~fl~~i~~------~~dVwfvT~~ei~~--w~~~p~ 494 (563)
+.+.+-+.|.+.....- +.|.-+.|+.| +....+. .||.||.. .+.|||.+.+|.-+ |||.-.
T Consensus 291 s~~~~k~~i~~~l~~~~-eeR~ai~IGvh-----~td~~W~---dfl~wLn~~YG~~G~DslWfp~~EEyyEY~Y~R~~~ 361 (480)
T 4dwe_A 291 NPDMIKAAILKEMENPK-EERAAISIGAH-----NTDTGWV---NFLEWLNDTYGRDGDDSMWFTNQEEYYEYYYYRLHS 361 (480)
T ss_dssp HHHHHHHHHHHHHTSCG-GGCCCEEEEES-----SCCHHHH---HHHHHHHHHTSTTTTCCEEEECHHHHHHHHHHHHHC
T ss_pred ChhHHHHHHHHHhcCCc-cccceeEEeec-----CCCCcHH---HHHHHHHHHhCcCCCcccccCCHHHHHHHHhhhhcc
Confidence 45555666665554322 34555778998 2334555 46777765 46699999999998 556553
Q ss_pred hh
Q psy16054 495 EL 496 (563)
Q Consensus 495 ~~ 496 (563)
.+
T Consensus 362 ~i 363 (480)
T 4dwe_A 362 KP 363 (480)
T ss_dssp CC
T ss_pred ee
Confidence 33
No 70
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=95.61 E-value=0.0068 Score=66.32 Aligned_cols=46 Identities=11% Similarity=0.218 Sum_probs=37.2
Q ss_pred CcccCC-CCceecCCCCCcCCCcCCCCCCccCCCCCccCcCCCCCCCCCCCCcccCCCceec
Q psy16054 97 KQISCP-SGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLPILKTDEPVCPEGKLSCGNGECID 157 (563)
Q Consensus 97 ~~~~C~-~G~~~~~~~~~CD~~~~v~dC~d~sde~~~~p~~~~~~~~C~~~~f~C~~G~Ci~ 157 (563)
.+|+|. +|.|| +..++|| |..||.|+|||.+|. ...+.|..+.+|+
T Consensus 69 ~~f~C~~~g~Ci-~~~~~Cd---g~~dC~d~sdE~~c~-----------~~~~~C~~~~~~~ 115 (537)
T 3ojy_B 69 EGFVCAQTGRCV-NRRLLCN---GDNDCGDQSDEANCR-----------RIYKKCQHEMDQY 115 (537)
T ss_dssp SSEECTTTCCEE-CGGGTTS---SSCCSSSSCTTSSCS-----------SCSSCCSSCCBCC
T ss_pred CccCcCCCCcEe-eccccCC---CCCCCCCccccccCC-----------CCCCccccCcCCC
Confidence 589999 99999 6677899 888999999998653 3345677777887
No 71
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=94.87 E-value=0.1 Score=51.47 Aligned_cols=181 Identities=12% Similarity=0.040 Sum_probs=97.4
Q ss_pred CCceEEEEeccCCCH-HHHHHHHHcCCeecccC----CCCC----CCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCc
Q psy16054 252 QIKGTFFVSHKYTNY-ASVQELHRKGHEISVFS----LTHK----DDPKYWSGGSYDDWLAEMAGGRLIIERFANISDGS 322 (563)
Q Consensus 252 ~ikaTFFv~~~~~~y-~~v~~i~~~GHEIa~H~----~~H~----~~~~~~~~~s~~~~~~Ei~~~~~~l~~~~gi~~~~ 322 (563)
+.+.||-|.-...+- +.++..+++||||-.|- .... ........++.++++.-|..+ |.+ ++ .
T Consensus 54 P~pvT~Ai~P~~p~~~~~a~~A~~~G~EvllHlPMep~~~p~~~~gp~~L~~~~s~~ei~~~l~~a---l~~---vP--~ 125 (261)
T 2qv5_A 54 PPEVTLGFAASGNSLQRWMQDARREGHEILLQIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRS---MAK---IT--N 125 (261)
T ss_dssp CTTSEEEEETTCSSHHHHHHHHHHHTCCEEEEEEECCTTTTTSCCCTTCBCTTSCHHHHHHHHHHH---HTT---CC--C
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCcCcCcCCCCHHHHHHHHHHH---HHH---CC--C
Confidence 678898886655444 78888999999999993 2221 111111357777776655443 333 22 2
Q ss_pred ceEEecCccc-c--Ch---hhHHHHHHHcCCeEEeecCCCCCCCCccceeccCCCCCCcCCCCCCCCCCCCCcEEEeccc
Q psy16054 323 VIGVRAPYLR-V--GG---NKQFSMMTDQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAHNCPSKSHPTWEMVMNE 396 (563)
Q Consensus 323 ~~G~R~P~l~-~--~~---~~~~~~L~e~Gf~YDsS~~~~~~~~p~wPytld~~~p~~c~~~~~pcp~~~~~lweiP~~~ 396 (563)
.+|+---.|+ + +. ..++++|++.|+.|--|.+++.+- ..-....+|+ |...
T Consensus 126 a~GvnNHmGS~~T~~~~~M~~vm~~L~~~gL~FlDS~Ts~~S~--a~~~A~~~gv---------------------p~~~ 182 (261)
T 2qv5_A 126 YTGVMNYLGGRFLAEQSALEPVMRDIGKRGLLFLDDGSSAQSL--SGGIAKAISA---------------------PQGF 182 (261)
T ss_dssp CSEEEEEECTTGGGCHHHHHHHHHHHHHTTCEEEECSCCTTCC--HHHHHHHHTC---------------------CEEE
T ss_pred cEEEecccccchhcCHHHHHHHHHHHHHCCCEEEcCCCCcccH--HHHHHHHcCC---------------------CeEE
Confidence 4555432222 1 21 245888999998776666542110 0000001111 1110
Q ss_pred cccCCCCCCCCCCCCccccCCCCCCCChHHHHHHHHHHHHHHHccCCcceEEeeccccccCchhHHHHHHHHHHHHHcCC
Q psy16054 397 LDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNRAPLGLHFHASWLKSKKEFKDELIKFIEEMLDRN 476 (563)
Q Consensus 397 l~~~d~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~F~~~y~~nrap~~l~lH~~~l~g~p~r~~al~~fl~~i~~~~ 476 (563)
+ +. ++| +..+.+.+.+.|.......... +.-++|. | + +|.-+++|++++..+. ..
T Consensus 183 --r-dv-----------FLD---~~~~~~~I~~qL~~a~~~Ar~~-G~AIaIG-h-p----~p~Ti~aL~~~~~~l~-~~ 237 (261)
T 2qv5_A 183 --A-DV-----------LLD---GEVTEASILRKLDDLERIARRN-GQAIGVA-S-A----FDESIAAISKWSREAG-GR 237 (261)
T ss_dssp --C-SE-----------ETT---SSCSHHHHHHHHHHHHHHHHHH-SEEEEEE-E-C----CHHHHHHHHHHHHHGG-GG
T ss_pred --e-ee-----------ecC---CCCCHHHHHHHHHHHHHHHHhc-CcEEEEe-C-C----CHHHHHHHHHHhhhhh-hC
Confidence 0 00 112 1244555555555544443332 2222222 6 3 3778899999999986 45
Q ss_pred CeEEEeHHHHHH
Q psy16054 477 DVYFVTMLQVIQ 488 (563)
Q Consensus 477 dVwfvT~~ei~~ 488 (563)
+|-+|+.++++.
T Consensus 238 gi~LVpvS~ll~ 249 (261)
T 2qv5_A 238 GIEIVGVSALVS 249 (261)
T ss_dssp TEEECCHHHHC-
T ss_pred CeEEEEHHHHhh
Confidence 899999999964
No 72
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=94.27 E-value=0.08 Score=57.36 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=67.5
Q ss_pred HHHHHHHHcC-CeecccCCCCCCCcCCCCCC-CHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCccccChh--------
Q psy16054 267 ASVQELHRKG-HEISVFSLTHKDDPKYWSGG-SYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVGGN-------- 336 (563)
Q Consensus 267 ~~v~~i~~~G-HEIa~H~~~H~~~~~~~~~~-s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~~~~-------- 336 (563)
...+++.++| -||-.-+++|..++- + ..++++.+|....+.+++..|. +|+|+..|-..++++
T Consensus 146 ~~fr~L~~~G~iEiit~~~tH~~lPL----l~~~e~~~~QI~~g~~~~~~~FG~---~P~G~WlpE~ay~~~~~~~~~~~ 218 (540)
T 3p0b_A 146 AAFRKAEEGGQVELITSNATHGYSPL----LGYDEALWAQIKTGVSTYRRHFAK---DPTGFWLPEMAYRPKGPWKPPVE 218 (540)
T ss_dssp HHHHHHHHHTSEEEEEECTTCBCGGG----CSCHHHHHHHHHHHHHHHHHHHSS---CCCBEECGGGCBCCSEEECCSSS
T ss_pred HHHHHHHHCCCEEEEcCCchhhHHhc----CCCHHHHHHHHHHHHHHHHHHhCC---CCCEEECcccceeCccccccccc
Confidence 3677788888 599999999998763 4 5899999999999999999985 589999999998851
Q ss_pred --------hHHHHHHHcCCeEEeec
Q psy16054 337 --------KQFSMMTDQFFVYDASI 353 (563)
Q Consensus 337 --------~~~~~L~e~Gf~YDsS~ 353 (563)
.+.++|+++||.|--.-
T Consensus 219 ~~~~~~~~~l~~~L~~~Gi~y~~vd 243 (540)
T 3p0b_A 219 GPPEGVRPGVDELLMRAGIRYTFVD 243 (540)
T ss_dssp CSCCEEECCHHHHHHHTTCCEEEEC
T ss_pred cccccchhhHHHHHHHcCCeEEEEC
Confidence 59999999999987544
No 73
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=94.07 E-value=0.026 Score=61.94 Aligned_cols=35 Identities=11% Similarity=0.276 Sum_probs=30.2
Q ss_pred cCcccCC-CCceecCCCCCcCCCcCCCCCCccCCCCCccC
Q psy16054 96 LKQISCP-SGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLP 134 (563)
Q Consensus 96 ~~~~~C~-~G~~~~~~~~~CD~~~~v~dC~d~sde~~~~p 134 (563)
..+|+|. +|.|| +..++|| |..||.|+|||.+|..
T Consensus 67 ~~~f~C~~~g~Ci-~~~~~Cd---g~~dC~d~sDE~~C~~ 102 (554)
T 3ojy_A 67 GQDFQCKETGRCL-KRHLVCN---GDQDCLDGSDEDDCED 102 (554)
T ss_dssp SSSEECSSSCCEE-CGGGTTS---SSCCSSSCTTSSSCCS
T ss_pred CCcCccCCCCEEc-ccccccC---CcccCCCccccccCCC
Confidence 3699999 99999 6677899 8889999999998753
No 74
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1
Probab=90.95 E-value=0.089 Score=41.55 Aligned_cols=33 Identities=27% Similarity=0.834 Sum_probs=27.6
Q ss_pred cCcccCCCCceecCCCCCcCCCcCCCCCCccCCC
Q psy16054 96 LKQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRP 129 (563)
Q Consensus 96 ~~~~~C~~G~~~~~~~~~CD~~~~v~dC~d~sde 129 (563)
+.++.|+.|+.||+....|||++.|. |.....+
T Consensus 35 ~~~~~Cp~Gl~Fn~~~~~Cd~p~~v~-C~~~~~~ 67 (74)
T 1dqc_A 35 ARLENCPKGLHYNAYLKVCDWPSKAG-CTSVNKE 67 (74)
T ss_dssp EEEEECTTSCEEETTTTEEECTTTTT-CCSSCCC
T ss_pred EEEeECcCCCEEChhhCcCcCcccCC-CCCCCCc
Confidence 45799999999999999999998884 8765543
No 75
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...
Probab=84.47 E-value=9.7 Score=44.77 Aligned_cols=81 Identities=11% Similarity=0.177 Sum_probs=60.5
Q ss_pred HHHHHHHHHcC-CeecccCCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEec-CccccChhhHHHHHH
Q psy16054 266 YASVQELHRKG-HEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRA-PYLRVGGNKQFSMMT 343 (563)
Q Consensus 266 y~~v~~i~~~G-HEIa~H~~~H~~~~~~~~~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~-P~l~~~~~~~~~~L~ 343 (563)
++.|++++++| .||..=+|.-.+. ...+.+.+.++|....+.+++..|+. ..+||-+ |||... .+..+|+
T Consensus 146 ~~~vk~lV~~Grle~~gG~Wv~~De----~~~~~EslirQl~~G~~~~~~~FG~~--~~~~W~pD~FG~s~--~lPqil~ 217 (1045)
T 3bvx_A 146 KLQMKSIVKNGQLEFVTGGWVMPDE----ANSHWRNVLLQLTEGQTWLKQFMNVT--PTASWAIAPFGHSP--TMPYILQ 217 (1045)
T ss_dssp HHHHHHHHHTTSEEESSCCSSCBCS----SSCCHHHHHHHHHHHHHHHHHHHCCC--CCEEEECCSSSBCT--HHHHHHH
T ss_pred HHHHHHHHhCCCEEEECCccccccc----cCCCHHHHHHHHHHHHHHHHHHhCCC--CceEEcCCCCCccH--HHHHHHH
Confidence 36899999999 5886667743332 13578889999999999988766764 3467766 777644 5899999
Q ss_pred HcCCeEEeecC
Q psy16054 344 DQFFVYDASIT 354 (563)
Q Consensus 344 e~Gf~YDsS~~ 354 (563)
+.||.|-....
T Consensus 218 ~~Gi~~~~~~R 228 (1045)
T 3bvx_A 218 KSGFKNMLIQR 228 (1045)
T ss_dssp TTTCCEEEECC
T ss_pred HcCCCeEEEec
Confidence 99999887764
No 76
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=84.09 E-value=0.45 Score=55.29 Aligned_cols=34 Identities=21% Similarity=0.453 Sum_probs=29.5
Q ss_pred CcccCCCCceecCCCCCcCCCcCCCCCCccCCCCCccC
Q psy16054 97 KQISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLP 134 (563)
Q Consensus 97 ~~~~C~~G~~~~~~~~~CD~~~~v~dC~d~sde~~~~p 134 (563)
..|+|.+|.|+ +..++|| +.+||.|+|||.+|..
T Consensus 121 ~~F~C~~g~ci-~~~~~c~---g~~dC~d~sde~~C~~ 154 (913)
T 3t5o_A 121 NKFRCDSGRCI-ARKLECN---GENDCGDNSDERDCGR 154 (913)
T ss_dssp SEEECTTSCEE-EGGGSSS---SSCCSSSSGGGTTCSS
T ss_pred cccccCCCceE-ccceecC---CcccCCCccccccCCC
Confidence 57999999999 5566899 8889999999998764
No 77
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1
Probab=79.57 E-value=6.8 Score=39.17 Aligned_cols=83 Identities=18% Similarity=0.128 Sum_probs=61.4
Q ss_pred HHHHHHHHHcC-CeecccCCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEec-CccccChhhHHHHHH
Q psy16054 266 YASVQELHRKG-HEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRA-PYLRVGGNKQFSMMT 343 (563)
Q Consensus 266 y~~v~~i~~~G-HEIa~H~~~H~~~~~~~~~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~-P~l~~~~~~~~~~L~ 343 (563)
++.|++++++| .||..=+|.-.+.. -.+.+.+.++|....+.+++..|+.+...+||-+ |||. +. .+..+|+
T Consensus 87 ~~~vk~lV~~Grle~vgG~wve~D~~----~~~~eslirQl~~G~~~~~~~fG~~~~~~~~W~pD~FG~-s~-~lP~il~ 160 (298)
T 1o7d_A 87 QKIVRELVRQGRLEFANGGWVMNDEA----TTHYGAIIDQMTLGLRFLEETFGSDGRPRVAWHIDPFGH-SR-EQASLFA 160 (298)
T ss_dssp HHHHHHHHHTTSEEESSCSSSCBCSS----SCCHHHHHHHHHHHHHHHHHHHGGGGCCSEEEESSSSSC-CH-HHHHHHH
T ss_pred HHHHHHHHHCCCEEEECceeeccccC----CCCHHHHHHHHHHHHHHHHHHcCCCCCCceeEeCCCCCc-cH-HHHHHHH
Confidence 37899999999 47877777544431 3578889999999999888766764333567766 6665 43 5899999
Q ss_pred HcCCeEEeecC
Q psy16054 344 DQFFVYDASIT 354 (563)
Q Consensus 344 e~Gf~YDsS~~ 354 (563)
+.||.|-....
T Consensus 161 ~~Gi~~~~~~R 171 (298)
T 1o7d_A 161 QMGFDGFFFGR 171 (298)
T ss_dssp HHTCCEEEESC
T ss_pred HcCCCeEEEEe
Confidence 99999987764
No 78
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis}
Probab=57.13 E-value=21 Score=41.16 Aligned_cols=79 Identities=18% Similarity=0.076 Sum_probs=57.3
Q ss_pred CHHHHHHHHHcC-CeecccCCCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEec-CccccChhhHHHHH
Q psy16054 265 NYASVQELHRKG-HEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRA-PYLRVGGNKQFSMM 342 (563)
Q Consensus 265 ~y~~v~~i~~~G-HEIa~H~~~H~~~~~~~~~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~-P~l~~~~~~~~~~L 342 (563)
.++.|++++++| .|||. +|...+.. -.+.+.+.++|....+.+++ .|+. ..+||-+ |||... .+.++|
T Consensus 71 ~~~~vk~lv~~Gr~eigg-~~v~~D~~----~~~~es~irq~~~G~~~~~~-fG~~--~~~~w~~D~FG~s~--~lp~i~ 140 (899)
T 3lvt_A 71 KKEAVKKAVQAGKLKIGP-FYILQDDF----LISSESNVRNMLIGHLESQK-WGAP--VQLGYFPDTFGNMG--QTPQMM 140 (899)
T ss_dssp GHHHHHHHHHTTSEECCS-BSSCCCGG----GSCHHHHHHHHHHHHHHHHH-HTCC--CCCEEESCCCT-----THHHHH
T ss_pred HHHHHHHHHHcCCEEECc-hhcccccc----CCCHHHHHHHHHHHHHHHHH-cCCC--CceeEeCCCCCCch--HHHHHH
Confidence 347899999998 47643 56655431 25788889999999999999 6764 3467766 776644 589999
Q ss_pred HHcCCeEEeec
Q psy16054 343 TDQFFVYDASI 353 (563)
Q Consensus 343 ~e~Gf~YDsS~ 353 (563)
++.||.|-.-+
T Consensus 141 ~~~Gi~~~~~~ 151 (899)
T 3lvt_A 141 QLANLPAAAFG 151 (899)
T ss_dssp HTTTCCEEEEC
T ss_pred HHcCCCeEEEe
Confidence 99999997765
No 79
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Probab=55.16 E-value=29 Score=40.14 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=58.9
Q ss_pred CHHHHHHHHHcC-CeecccCC-CCCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEec-CccccChhhHHHH
Q psy16054 265 NYASVQELHRKG-HEISVFSL-THKDDPKYWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRA-PYLRVGGNKQFSM 341 (563)
Q Consensus 265 ~y~~v~~i~~~G-HEIa~H~~-~H~~~~~~~~~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~-P~l~~~~~~~~~~ 341 (563)
.++.|++++++| .||| +| ...+. .-.+.+.+.++|....+.+++ .|+.. .+||-+ |||... .+.++
T Consensus 90 ~~~~vk~lV~~GrleiG--~wYv~~D~----~~~~~es~irq~~~G~~~~~~-fG~~~--~~~w~pD~FG~s~--~lPqi 158 (923)
T 2wyh_A 90 REPEIRQAIASGKLRIG--PFYILQDD----FLTSSESNVRNMLIGKEDCDR-WGASV--PLGYFPDTFGNMG--QTPQL 158 (923)
T ss_dssp GHHHHHHHHHTTSEECC--SBSSCBCS----TTSCHHHHHHHHHHHHHHHHH-HTCCC--SSEEESSCSSBCT--THHHH
T ss_pred HHHHHHHHHHcCCEEEe--eeeecccc----ccCCHHHHHHHHHHHHHHHHH-cCCCC--ceeEecCCCCcch--HHHHH
Confidence 447899999999 5773 55 33332 135788999999999999999 67653 356655 777754 58999
Q ss_pred HHHcCCeEEeecC
Q psy16054 342 MTDQFFVYDASIT 354 (563)
Q Consensus 342 L~e~Gf~YDsS~~ 354 (563)
|++.||.|-....
T Consensus 159 l~~~Gi~~~~~~R 171 (923)
T 2wyh_A 159 MLKAGLQAAAFGR 171 (923)
T ss_dssp HHTTTCCEEEECS
T ss_pred HHHcCCCEEEEEe
Confidence 9999999987764
No 80
>3lm3_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.44A {Parabacteroides distasonis}
Probab=55.13 E-value=1.7e+02 Score=29.15 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=58.1
Q ss_pred HHHHhccCCCCCCCCCCceEEEEeccC-----CCHHHHHHHH-----HcCCeecccCCCCCCCcCCCCCCCHHHHHHHHH
Q psy16054 237 YDEIFNGNRQNPNGCQIKGTFFVSHKY-----TNYASVQELH-----RKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMA 306 (563)
Q Consensus 237 ~~~ll~~~r~n~n~~~ikaTFFv~~~~-----~~y~~v~~i~-----~~GHEIa~H~~~H~~~~~~~~~~s~~~~~~Ei~ 306 (563)
+.+.|. +.||| ++.||-++-.. .+|.+|++-+ +-|-||+---=--..+ .++.++..+||.
T Consensus 59 ~reAfa--~~~Pn---~rlTWa~t~~aled~rp~yrqIr~Yv~~c~~kyGDEV~~~pGYf~~m-----ylPr~eV~ReMS 128 (449)
T 3lm3_A 59 LREAFA--TNNPN---GRLTWGFTMNALEDGRKNYREIRDYVVECQKKYGDEVTYFPGYFPAM-----YLPRERVNREMS 128 (449)
T ss_dssp HHHHHH--TTCTT---CCCEEEECHHHHHCCSHHHHHHHHHHHHHHHHHCCEEEECCCSCHHH-----HSCHHHHHHHHH
T ss_pred HHHHHH--hcCCC---ceEEEEEEEeecccCChhHHHHHHHHHHHHHHhCCceeecCCCchhh-----cCcHHHHHHHHH
Confidence 345554 44564 58888776332 2676666543 4699998543211222 378999999999
Q ss_pred HHHHHHHHHhCC--CCCcceEEecCccccChhhHHHHHHHcCCeEE
Q psy16054 307 GGRLIIERFANI--SDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYD 350 (563)
Q Consensus 307 ~~~~~l~~~~gi--~~~~~~G~R~P~l~~~~~~~~~~L~e~Gf~YD 350 (563)
.+.++|.+..+- .++.++| -| .+++++.=+.++.++.-.
T Consensus 129 EAi~~lh~m~~~~YrPksl~~---gf--lsa~nl~~Lae~~~I~~A 169 (449)
T 3lm3_A 129 EAIEIISKMVGNGYRPQSIMG---GF--LSADNLRYLAEKENIHVA 169 (449)
T ss_dssp HHHHHHHHHHCTTCCCSEEEC---SS--CCHHHHHHHHHHSCCCEE
T ss_pred HHHHHHHHhccCCcCchhhhh---cc--cCHHHHhhHHhhcCceee
Confidence 999999987762 1122222 12 244444444555677644
No 81
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=44.26 E-value=38 Score=28.24 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=37.9
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHccCCcceEEeeccccccCchhH-HHHHHHHHHHHHcC
Q psy16054 417 SCSNIQTGEQFGRLLRHNFNRHFSTNRAPLGLHFHASWLKSKKEF-KDELIKFIEEMLDR 475 (563)
Q Consensus 417 ~~~~~~~~~~~~~~l~~~F~~~y~~nrap~~l~lH~~~l~g~p~r-~~al~~fl~~i~~~ 475 (563)
+|.+..|..+.++||..++.|-|-. .||.++.= . |...++- -..-++|++.|...
T Consensus 21 SCVnaPSSkeTyEWLqAal~RKyp~--~~f~~~YI-D-I~~~~~~l~d~~~~~ae~I~ed 76 (111)
T 1xg8_A 21 SCVNAPTSKDIYDWLQPLLKRKYPN--ISFKYTYI-D-ITKDNDNLTDHDLQFIERIEQD 76 (111)
T ss_dssp GGSSSCCHHHHHHHHHHHHHHHCTT--SCEEEEEE-E-TTTC---CCHHHHHHHHHHHTT
T ss_pred hccCCCCchhHHHHHHHHHhCcCCC--CceEEEEE-e-ccCCccchhHHHHHHHHHHhhc
Confidence 5888899999999999999999854 57866442 2 3322222 14467899999853
No 82
>2i5i_A UPF0249 protein EF_3048; putative cellobiose-phosphate cleavage protein, structural G joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis} SCOP: c.6.2.8
Probab=41.06 E-value=83 Score=30.43 Aligned_cols=118 Identities=8% Similarity=0.053 Sum_probs=72.0
Q ss_pred eEEeecC-CcCCCCchHHHHHhccCCCCCCCCCCceE-EEEeccCCCHHHHHHHH-H-cCCeeccc-CCCC--CC-C---
Q psy16054 221 ITITFNG-AVNVDNSDLYDEIFNGNRQNPNGCQIKGT-FFVSHKYTNYASVQELH-R-KGHEISVF-SLTH--KD-D--- 289 (563)
Q Consensus 221 V~lTFDD-~~~~~~~~~~~~ll~~~r~n~n~~~ikaT-FFv~~~~~~y~~v~~i~-~-~GHEIa~H-~~~H--~~-~--- 289 (563)
+.|.=|| |........+.+++...+ +.+| ..|++.+. .+.++.+. + .+-.||.| +.+. -. +
T Consensus 7 LIvnADDfGls~~vN~gI~~~~~~G~-------ltstslMvn~p~~-~~A~~~~k~~~p~l~vGlHl~Lt~e~g~Pl~~~ 78 (263)
T 2i5i_A 7 LIINADDFGYTPAVTQGIIEAHKRGV-------VTSTTALPTSPYF-LEAMESARISAPTLAIGVHLTLTLNQAKPILPR 78 (263)
T ss_dssp EEEEEEEETSSHHHHHHHHHHHHSSS-------CCEEEECTTSTTH-HHHHHHHHHHCTTCEEEEEECSCCTTCCCSSCT
T ss_pred EEEEcccCCCChhHHHHHHHHHHCCc-------ceEeeeccCCcHH-HHHHHHHHHhCCCCCEEEEEEeccCCCCCCCCc
Confidence 6788899 766655566777776433 4544 44555442 25555555 3 36789999 3343 11 1
Q ss_pred ---cC-------------CCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEecCcccc-Ch---hhHHHHHHHcCCeE
Q psy16054 290 ---PK-------------YWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRV-GG---NKQFSMMTDQFFVY 349 (563)
Q Consensus 290 ---~~-------------~~~~~s~~~~~~Ei~~~~~~l~~~~gi~~~~~~G~R~P~l~~-~~---~~~~~~L~e~Gf~Y 349 (563)
+. ++..++.+++++||..+.+.+.+ +|+.+..+-|---= .. -+ +..++++++.|+.+
T Consensus 79 ~~ipsLvd~~G~f~~~~~~~~~~~~~ev~~El~AQi~~f~~-~G~~p~hiD~H~hv--h~~~P~v~~~~~~la~~~~lp~ 155 (263)
T 2i5i_A 79 EMVPSLVDEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFMK-SGRRPDHIDSHHNV--HGKNKKLLGVALALARKYQLPL 155 (263)
T ss_dssp TTSGGGBCTTSCBCCHHHHTTTCCHHHHHHHHHHHHHHHGG-GSSCCSCEEEGGGG--GGSSHHHHHHHHHHHHHHTCCB
T ss_pred ccCCceECCCCCCCccHHHHhcCCHHHHHHHHHHHHHHHHH-cCCCCCcccccccc--ccCchhHHHHHHHHHHHcCCCe
Confidence 00 12246789999999999999888 78887776664211 11 11 34567777777754
No 83
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Probab=29.01 E-value=91 Score=32.62 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=60.2
Q ss_pred CcCCCCchHHHHHhccCCCCCCCCCCceEEEEeccCC-----CHHHHHHHHHcCCeec-----ccCCCCCCCcCCCCCCC
Q psy16054 228 AVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYT-----NYASVQELHRKGHEIS-----VFSLTHKDDPKYWSGGS 297 (563)
Q Consensus 228 ~~~~~~~~~~~~ll~~~r~n~n~~~ikaTFFv~~~~~-----~y~~v~~i~~~GHEIa-----~H~~~H~~~~~~~~~~s 297 (563)
|++-. .+.++.|++ +-||++-+-|.|+-+--... -+.+|+++.+.||.|. .||.++.....| ..-.
T Consensus 308 GP~~~-p~elv~L~~--~LnP~~epGRlTLI~RmGa~kv~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~~~~G~-KTR~ 383 (462)
T 3rzi_A 308 GPNMT-PELAVEYVE--RLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGF-KTRH 383 (462)
T ss_dssp CTTCC-HHHHHHHHH--HHCTTCCTTSEEEEECCCTTTHHHHHHHHHHHHHHTSCCCEEEECCSTTSEEECTTSC-EEEB
T ss_pred CCCCC-HHHHHHHHH--HhCCCCCCCeEEEEEccCCchhhhhHHHHHHHHHHCCCCeEEEeCCCCCCceeCCCCC-ccCc
Confidence 44433 344556665 45788888899987743322 3489999999999997 788887654322 2346
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q psy16054 298 YDDWLAEMAGGRLIIERFAN 317 (563)
Q Consensus 298 ~~~~~~Ei~~~~~~l~~~~g 317 (563)
.+.+.+|+.+..++.++...
T Consensus 384 fd~Il~Ev~~ff~vh~~~Gt 403 (462)
T 3rzi_A 384 FDRIVDEVQGFFEVHRALGT 403 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 78899999999999887543
Done!