RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16054
(563 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 3e-09
Identities = 82/570 (14%), Positives = 164/570 (28%), Gaps = 173/570 (30%)
Query: 35 EEYFR--LTIEGDCRDVVRCDQAGENGITRLAGVRCPNG----LAF--DIDRQTCDW-KT 85
++ + L+ E + ++ A +G RL F ++ R + +
Sbjct: 39 QDMPKSILSKE-EIDHIIMSKDA-VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 86 NVKNCDLLESLKQ---ISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKVLPILKTDEPV 142
+K S+ I L D K V+ + R+ L L+ + V
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---KYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 143 CPEGKLSCGNGECIDKTLF----CDDKP---------------DCKDESDENACSVEQDP 183
+G L G KT C +C +E
Sbjct: 154 LIDGVLGSG------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV----LEMLQ 203
Query: 184 NRAPDCDPTQCALPDCFCSADGTRIPGGIEPNQVPQMITITFNGAV---------NVDNS 234
DP + D + I + + + + NV N+
Sbjct: 204 KLLYQIDPNWTSRSD-----HSSNIK--LRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 235 DLYDEIFNGNRQNPNGCQI------KG-TFFVSHKYTNYASV------------------ 269
++ FN C+I K T F+S T + S+
Sbjct: 257 KAWNA-FNL------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 270 ------QELHR---KGH--EISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIERFANI 318
Q+L R + +S+ + + +D W D+W + ++ I
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-----DNWK------HVNCDKLTTI 358
Query: 319 SDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITAS-LGRVPIWPYTLYFRMPHKCNG 377
+ S+ + R K F ++ F A I L IW +
Sbjct: 359 IESSLNVLEPAEYR----KMFDRLS--VFPPSAHIPTILLSL--IWFDVIK--------- 401
Query: 378 NAHNCPSKSHPTWEMVMNELDR-----RDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLR 432
+ +V+N+L + + S+P ++ ++
Sbjct: 402 ---SDV-------MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 433 H-NFNRHFSTNRAP-----------LGLHF-HASWLKSKKEFKDELI--KFIEEMLDRND 477
H N + F ++ +G H + + F+ + +F+E+ + R+D
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHD 510
Query: 478 VYFVTMLQVIQWMQNPTELTSLRDFQEWKE 507
W + + L +L+ + +K
Sbjct: 511 ST--------AWNASGSILNTLQQLKFYKP 532
Score = 39.1 bits (90), Expect = 0.004
Identities = 73/491 (14%), Positives = 138/491 (28%), Gaps = 160/491 (32%)
Query: 26 EQLCEGRPPEEYFRLTIEGDCRDVVRCDQAGENGITRLAGVRCPNGLAFDIDRQTCD--- 82
+ L E RP + + I+G G +G T +A C L++ + +
Sbjct: 142 QALLELRP-AKN--VLIDGV---------LG-SGKTWVALDVC---LSYKVQCKMDFKIF 185
Query: 83 WKTNVKNC----DLLESLK----QISCPSGLAFDVDK----QTCDWKAKVTNCNQLDRPR 130
W N+KNC +LE L+ QI D + +A++ +
Sbjct: 186 W-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 131 KVLPILKTDEPVCPEGKLSCGNGECIDKTLF--------------------CDDKPD--C 168
L +L V + N C K L D
Sbjct: 245 NCLLVL--LN-VQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 169 KDESDE------NACSVEQDPNRAPDCDPTQCAL-----PDCFCSADGTRIPGGIEPNQV 217
DE + C + P +P + ++ D + D + + +++
Sbjct: 300 PDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HVNCDKL 355
Query: 218 PQMITITFNGAVNVDNSDLYDE--IFNGNRQNPNGCQIKGTFFV-----SHKYTNYASVQ 270
+I + N + ++D +F P I K V
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVF------PPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 271 ELHRKGHEISVFSLTHKDDPKYWSG--GSYDDWLAEMAGG----RLIIERF--------- 315
+LH+ SL K + Y + ++ R I++ +
Sbjct: 410 KLHKY-------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 316 ---ANISDG---SVIGVRAPY-LRVGGNKQ-FSMMTDQFFVYD-------ASITASLGRV 360
D S IG + L+ + + ++ F + TA
Sbjct: 463 DLIPPYLDQYFYSHIG----HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 361 PIWP-------YTLYFRMPHKCNGNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGC- 412
I Y Y + P +E ++N + F LP
Sbjct: 519 SILNTLQQLKFYKPYI--------------CDNDPKYERLVNAILD-----F---LPKIE 556
Query: 413 -HMVDS-CSNI 421
+++ S +++
Sbjct: 557 ENLICSKYTDL 567
Score = 38.7 bits (89), Expect = 0.006
Identities = 43/356 (12%), Positives = 93/356 (26%), Gaps = 99/356 (27%)
Query: 47 RDVVRCDQAGENGITRLAGVRCPNGLAFDIDRQTCDWKTNVKNCDLLESLKQISCP---S 103
R D T ++ L D + + + DL + + P S
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLS 331
Query: 104 GLAFDVDKQTCDWKA-KVTNCNQLDRPRKV----------------LPILKTDEPVCPEG 146
+A + W K NC++L + L + + P
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTI 390
Query: 147 KLSCGNGECIDKTLFCDDKPDCKDE---SDENACSVEQDPNRAPDCDPTQCALPDCFCSA 203
LS ++ D VE+ P + ++P +
Sbjct: 391 LLS---------LIWFDVIKSDVMVVVNKLHKYSLVEKQPK------ESTISIPSIYLE- 434
Query: 204 DGTRIPGGIEPNQVPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKY 263
++ E + + I +N D+ DL + F+ +
Sbjct: 435 --LKVKLENEY-ALHRSIVDHYNIPKTFDSDDLIPP------------YLDQYFY---SH 476
Query: 264 TNYASVQELH----RKGHEISVFS------------LTHKDDPKYWSGGS---------Y 298
+ H +++F + H SG Y
Sbjct: 477 IGH------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 299 DDWLAEMAGG--RLI--IERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYD 350
++ + RL+ I F + + + Y + + ++M + +++
Sbjct: 531 KPYICDNDPKYERLVNAILDFL-PKIEENL-ICSKYTDL---LRIALMAEDEAIFE 581
Score = 28.7 bits (63), Expect = 6.6
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 49/124 (39%)
Query: 449 HFHASWLKSKKE--FKDELIKFIEEMLDRNDVYFV--TMLQVIQWMQNPTELTSLRDFQE 504
H H + + + +KD L F + +D D V ++
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS---------------- 47
Query: 505 WKEKCD-VKGQPYCSLPNACPLTTRELPGETIRLFTCMECPN--------------NYPW 549
KE+ D + T+RLF + NY +
Sbjct: 48 -KEEIDHIIMSK-----------DAVS--GTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 550 ILDP 553
++ P
Sbjct: 94 LMSP 97
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 50.3 bits (121), Expect = 9e-09
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACS 178
C + C +GECI + CD PDCKD+SDE C+
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 50.4 bits (121), Expect = 2e-08
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQC 194
C + + C +G+CI + CD DC D SDE +C V + C+ + C
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTC 54
Score = 50.0 bits (120), Expect = 3e-08
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 139 DEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACS 178
C C + CI + CD+ PDC+D SDE
Sbjct: 38 PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 77
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 50.4 bits (121), Expect = 3e-08
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 141 PVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPDCF 200
CP + SC +G CI + CD DC D SDE+A C C F
Sbjct: 3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESAS-----------CAYPTCFPLTQF 51
Query: 201 CSADGTRIPG 210
+G I
Sbjct: 52 TCNNGRCINI 61
Score = 48.8 bits (117), Expect = 7e-08
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACS 178
P + +C NG CI+ CD+ DC D SDE CS
Sbjct: 46 FPLTQFTCNNGRCININWRCDNDNDCGDNSDEAGCS 81
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 48.4 bits (116), Expect = 5e-08
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 141 PVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENAC 177
P C G+ +C N CI + CD DC D SDE
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 47.7 bits (114), Expect = 7e-08
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACS 178
C + C +G CI + CD DC D SDE +
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 47.6 bits (114), Expect = 9e-08
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 140 EPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENAC 177
C + + C N CI CD+ DC D SDE+ C
Sbjct: 5 AKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 52.9 bits (126), Expect = 2e-07
Identities = 22/68 (32%), Positives = 29/68 (42%)
Query: 134 PILKTDEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQ 193
+ + D C + C +GECI + CD PDCKD+SDE C+V C
Sbjct: 185 YVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGN 244
Query: 194 CALPDCFC 201
C C
Sbjct: 245 CIHGSRQC 252
Score = 52.5 bits (125), Expect = 3e-07
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 141 PVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPDCF 200
C + C +G CI + CD + DCKD SDE C + T C P+ F
Sbjct: 231 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC-----------VNVTLCEGPNKF 279
Query: 201 CSADGTRIPGGIEPNQVPQ 219
G I N
Sbjct: 280 KCHSGECITLDKVCNMARD 298
Score = 48.3 bits (114), Expect = 5e-06
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 138 TDEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALP 197
C + C +G+CI CD +C+D SDE+ + C C
Sbjct: 19 AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET----------CLSVTCKSG 68
Query: 198 DCFCSADGTR 207
D C R
Sbjct: 69 DFSCGGRVNR 78
Score = 46.8 bits (110), Expect = 2e-05
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 140 EPVCPEGKLSCGN--GECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALP 197
C G SCG CI + CD + DC + SDE C + C +C
Sbjct: 62 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISR 121
Query: 198 DCFC 201
C
Sbjct: 122 QFVC 125
Score = 44.4 bits (104), Expect = 1e-04
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPDC--- 199
K C +GECI C+ DC+D SDE + + +
Sbjct: 274 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGY 333
Query: 200 -FCSADGTRIPG 210
DG ++
Sbjct: 334 ECLCPDGFQLVA 345
Score = 31.3 bits (70), Expect = 0.99
Identities = 8/54 (14%), Positives = 18/54 (33%)
Query: 141 PVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQC 194
+ + C +G + C+D +C+D + V + C+
Sbjct: 328 DLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQ 381
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 45.5 bits (108), Expect = 5e-07
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 138 TDEPVCPEGKLSCGNG-ECIDKTLFCDDKPDCKDESDENAC 177
+ + C G CGN +C+ + L C+ DC +++DE+ C
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 50.6 bits (120), Expect = 1e-06
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 139 DEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPD 198
C + C +G CI + CD + DCKD SDE C + T C P+
Sbjct: 211 AVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC-----------VNVTLCEGPN 259
Query: 199 CFCSADGTRIPGGIEPNQVPQ 219
F G I N
Sbjct: 260 KFKCHSGECITLDKVCNMARD 280
Score = 50.6 bits (120), Expect = 1e-06
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 139 DEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQC 194
C + + C +G+CI + CD DC D SDE +C V + C+ + C
Sbjct: 84 PPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTC 139
Score = 48.6 bits (115), Expect = 4e-06
Identities = 22/68 (32%), Positives = 29/68 (42%)
Query: 134 PILKTDEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQ 193
+ + D C + C +GECI + CD PDCKD+SDE C+V C
Sbjct: 167 YVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGN 226
Query: 194 CALPDCFC 201
C C
Sbjct: 227 CIHGSRQC 234
Score = 47.1 bits (111), Expect = 1e-05
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPDCFCS 202
C + C +G+CI CD +C+D SDE+ C C D C
Sbjct: 6 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE----------TCLSVTCKSGDFSCG 55
Query: 203 ADGTR 207
R
Sbjct: 56 GRVNR 60
Score = 46.3 bits (109), Expect = 2e-05
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 140 EPVCPEGKLSCGN--GECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALP 197
C G SCG CI + CD + DC + SDE C + C +C
Sbjct: 44 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISR 103
Query: 198 DCFC 201
C
Sbjct: 104 QFVC 107
Score = 42.9 bits (100), Expect = 3e-04
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 10/72 (13%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPDCFCS 202
K C +GECI C+ DC+D SDE +C +C + CS
Sbjct: 256 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIK----------ECGTNECLDNNGGCS 305
Query: 203 ADGTRIPGGIEP 214
+ G E
Sbjct: 306 HVCNDLKIGYEC 317
Score = 32.5 bits (73), Expect = 0.48
Identities = 9/61 (14%), Positives = 19/61 (31%)
Query: 141 PVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPDCF 200
+ + C +G + C+D +C+D + V + C+ P
Sbjct: 310 DLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTK 369
Query: 201 C 201
Sbjct: 370 A 370
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 48.3 bits (114), Expect = 1e-06
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 137 KTDEPVCPEGKLSCG--NGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPT 192
+ ++P C E + CG + +CI K CD DC++ DE C++ D
Sbjct: 49 ELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVC 106
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 44.0 bits (104), Expect = 2e-06
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 138 TDEPVCPEGKLSC-----GNGECIDKTLFCDDKPDCKDESDENAC 177
++ CP G+ C +GEC + CD PDC D DE C
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 44.2 bits (105), Expect = 2e-06
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 139 DEPVCPEGKLSCGNGE-CIDKTLFCDDKPDCKDESDENACS 178
C + C +G CI+ CD DC+D SDE C
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP 43
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 49.5 bits (118), Expect = 2e-06
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 137 KTDEPVCP-EGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCA 195
T + P + C NG+ I + CD DC D+SDE C + + C C
Sbjct: 197 YTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCC--KACQGKGFHCKSGVCI 254
Query: 196 LPDCFCSADGTRIPGGIEPNQ 216
C+ + I G E
Sbjct: 255 PSQYQCNGEVDCITGEDEVGC 275
Score = 38.0 bits (88), Expect = 0.008
Identities = 22/110 (20%), Positives = 31/110 (28%), Gaps = 21/110 (19%)
Query: 139 DEPVCPE---GKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQD----------PNR 185
DE C C +G CI C+ + DC DE C+ +
Sbjct: 234 DELCCKACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADM 293
Query: 186 APDCDPTQCALPDCFC------SADGTRIPGGIE--PNQVPQMITITFNG 227
+ + LP C RI GG +P + I
Sbjct: 294 DAERRRIKSLLPKLSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDAS 343
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 48.0 bits (113), Expect = 2e-06
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 137 KTDEPVCPEGKLSCGN--GECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQC 194
+E C E + C ECI LFCD + DC+D SDE+ + +
Sbjct: 48 NLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLA 107
Query: 195 ALPDC 199
C
Sbjct: 108 TWTSC 112
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 44.5 bits (105), Expect = 3e-06
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 137 KTDEPVCPEGKLSCGN-GECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCA 195
K + C SC C+ + CD DC D +DE+ + +
Sbjct: 3 KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTE 62
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 43.1 bits (102), Expect = 3e-06
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 138 TDEPVCPEGKLSCGNG-ECIDKTLFCDDKPDCKDESDENACS 178
++ C SC C+ + CD DC D +DE+ +
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 43.0 bits (102), Expect = 4e-06
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 143 CPEGKLSC-GNGECIDKTLFCDDKPDCKDESDENAC 177
C + C +G CI CD DC D SDE +C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 41.7 bits (98), Expect = 1e-05
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 143 CPEGKLSCG-----NGECIDKTLFCDDKPDCKDESDENAC 177
CP G+ C +GEC + CD PDC D DE C
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 41.6 bits (98), Expect = 1e-05
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 143 CPEGKLSCGNG--ECIDKTLFCDDKPDCKDESDENACS 178
C ++SCG +CI + CD + DC DE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 42.6 bits (99), Expect = 1e-04
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 137 KTDEPVCPEGKLSCG--NGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQC 194
K + C + CG ECI L CD DC + DE+ + +A +
Sbjct: 47 KIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTS 106
Query: 195 ALPDCFCSAD 204
C D
Sbjct: 107 TWHGCLARED 116
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase,
divale metal cation dependent, carbohydrate esterase
family 4; 1.45A {Streptococcus mutans UA159}
Length = 311
Score = 42.2 bits (99), Expect = 2e-04
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 252 QIKGTFFV--SHKYTNYAS-VQELHRKGHEISVFSLTHKDDPKYWSG-GSYDDWLAEMAG 307
+ TFF+ + +Q +GH + + S +H Y + G+ ++E+
Sbjct: 133 HVHATFFLVGCNITDKVKPILQRQITEGHALGIHSFSHVYSLLYPNRVGNTQQIVSEVTR 192
Query: 308 GRLIIERFANISDGSVIGVRAPY 330
+ ++ + + + R P
Sbjct: 193 TQNALKDQLGQNFKTGV-WRYPG 214
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan,
TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter
pylori}
Length = 326
Score = 40.6 bits (95), Expect = 8e-04
Identities = 34/259 (13%), Positives = 67/259 (25%), Gaps = 49/259 (18%)
Query: 252 QIKGTFF-VSHKYTNY-ASVQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGR 309
+ T+F H + ++ + GHE+ +H++ S +
Sbjct: 87 HLPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYSHEN----PIAMSTKQEEDVLLKSV 142
Query: 310 LIIERFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITA---------SLGRV 360
+I+ + G AP+ ++ F YD S+
Sbjct: 143 ELIKDLTGKA---PTGYVAPWWEFSNI-TNELLLKHGFKYDHSLMHNDFTPYYVRVGDSW 198
Query: 361 PIWPYTLYFRMPHKCNGNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSN 420
Y+L + K P LD F + P
Sbjct: 199 SKIDYSLEAKDWMKPLIRGVETNLVEIP----ANWYLDDLPPMMFIKKSPNSFG------ 248
Query: 421 IQTGEQFGRLLRHNFNRHFSTNRA---PLGLHFHAS-------WLKSKKEFKDELIKFIE 470
+ G++ F+ + + +H S + K IE
Sbjct: 249 FVSPRDIGQMWIDQFDWVYREMDYAVFSMTIHPDVSARPQVLLMHE----------KIIE 298
Query: 471 EMLDRNDVYFVTMLQVIQW 489
+ V +VT ++
Sbjct: 299 HINKHEGVRWVTFNEIADD 317
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 8e-04
Identities = 69/419 (16%), Positives = 110/419 (26%), Gaps = 148/419 (35%)
Query: 228 AVNVDNSDLYDEIFNGNRQ-NPNGCQIKGTFF--VSHKYTNYAS-VQEL-HRKGHEISVF 282
AV N+ L IF G Q N + +F + Y Y V +L +S
Sbjct: 148 AVGEGNAQLV-AIFGG--QGNTD------DYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 283 SLTHKDDPKYWSGGSYD--DWL--AEMAGGRLIIERFANISDGSVIGVR--APYLRVGGN 336
T D K ++ G + +WL + + IS +IGV A Y+
Sbjct: 199 IRTTLDAEKVFTQG-LNILEWLENPSNTPDKDYL-LSIPIS-CPLIGVIQLAHYVVTA-- 253
Query: 337 KQFSMMTDQFFVYDASITASLGRVPI---------WP---------YTLYFRM------- 371
K + Y T + W T+ F +
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 372 -PH---------KCNGNAHNCPSKSHPTWEMV------MNELDRRDDPTFDESLPGCHMV 415
P+ N PS P M+ ++ + + LP V
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPS---P---MLSISNLTQEQVQDYVN-KTNSHLPAGKQV 366
Query: 416 DSCSNIQTGEQF---G--RLLRHNFNRHFSTNRAPLGL---------------------- 448
S + + G + L N +AP GL
Sbjct: 367 -EISLVNGAKNLVVSGPPQSLYG-LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 449 -HFHASWLKSKKEFKDELIKFIEEMLDRND----VYF------------------VTML- 484
FH+ L + ++ + + D VY V +
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 485 -QVIQWMQ-NPTELTSLRDFQEWKEKCDVKGQPYCSLPNAC----PLTTRELPGETIRL 537
++W + T + DF G P LT R G +R+
Sbjct: 485 RLPVKWETTTQFKATHILDF----------G------PGGASGLGVLTHRNKDGTGVRV 527
Score = 33.9 bits (77), Expect = 0.17
Identities = 30/175 (17%), Positives = 51/175 (29%), Gaps = 72/175 (41%)
Query: 392 MVMNELDR----RD-----DPTFDESLPGCHMVDSCSN------IQTGEQFGRLLRHNFN 436
M M+ +D D F ++ G ++D N I G + G+ +R N++
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTY-GFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 437 RH-FSTNRAPLGLHFHASWLKSKKEFKD---ELIKFI----EEMLDRNDVYFVTMLQVIQ 488
F T LK++K FK+ + + +L
Sbjct: 1690 AMIFETIV--------DGKLKTEKIFKEINEHSTSYTFRSEKGLLSA------------- 1728
Query: 489 WMQNPTE-------LTSLRDFQEWKEKCDVKGQPYC---SLPNACPLTTRELPGE 533
T+ L F++ K K + SL GE
Sbjct: 1729 -----TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL------------GE 1766
Score = 32.7 bits (74), Expect = 0.46
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 39/98 (39%)
Query: 431 LRH-NFNRHFSTNRAPLGLHFHASWLKSKKEFKD-------------------EL----I 466
L H + P F AS L +++F EL +
Sbjct: 11 LSHGSLEHVLLV---PTASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 467 KFIEEMLDRNDVYFVTMLQVIQWMQNPTELTSLRDFQE 504
++ +++ + V QV+ L +F+
Sbjct: 66 GYVSSLVEPSKVG--QFDQVLN--------LCLTEFEN 93
Score = 28.5 bits (63), Expect = 9.1
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 1 HAEPLR---TKRQNEENGAASGDDEP-SVEQLC 29
A L+ K E + DDEP + +L
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Length = 230
Score = 38.1 bits (89), Expect = 0.004
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 252 QIKGTFFVS-HKYTNYAS-VQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGR 309
+ TFFV +Q + +GH++ + H P YD ++M
Sbjct: 58 SARATFFVLGDAAAQNPGLLQRMRDEGHQVGAHTYDHVSLPSL----GYDGIASQMTRLE 113
Query: 310 LIIERFANISDGSVIGVRAPYLR 332
+I +GV Y+R
Sbjct: 114 EVIRP--------ALGVAPAYMR 128
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4
carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum}
SCOP: c.6.2.3
Length = 254
Score = 38.2 bits (89), Expect = 0.005
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 19/88 (21%)
Query: 252 QIKGTFFV--SHKYTNYAS-----VQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAE 304
++ TFFV ++ A ++ + GH + + H D S D +++
Sbjct: 67 DVRATFFVNGNNWANIEAGSNPDTIRRMRADGHLVGSHTYAHPDLNTL----SSADRISQ 122
Query: 305 MAGGRLIIERFANISDGSVIGVRAPYLR 332
M R + G Y+R
Sbjct: 123 MRQLEEATRR--------IDGFAPKYMR 142
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus
tridentatus} SCOP: g.31.1.1
Length = 74
Score = 35.2 bits (81), Expect = 0.005
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 98 QISCPSGLAFDVDKQTCDWKAKVTNCNQLDRPRKV 132
+CP GL ++ + CDW +K C +++ +
Sbjct: 37 LENCPKGLHYNAYLKVCDWPSKA-GCTSVNKECHL 70
Score = 34.8 bits (80), Expect = 0.007
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 45 DCRDVVRCDQAGENGITRLAGVRCPNGLAFDIDRQTCDWKTNVKNCDLLESLKQI 99
C C + RL CP GL ++ + CDW + C + +
Sbjct: 23 SCCSFYNCH----KCLARL--ENCPKGLHYNAYLKVCDWPSKAG-CTSVNKECHL 70
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 37.1 bits (86), Expect = 0.013
Identities = 14/106 (13%), Positives = 24/106 (22%), Gaps = 2/106 (1%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPDCFCS 202
C + T F ++ D AC ++ A C C+
Sbjct: 283 CRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEAC--QKLCTNAVRCQFFTYTPAQASCN 340
Query: 203 ADGTRIPGGIEPNQVPQMITITFNGAVNVDNSDLYDEIFNGNRQNP 248
+ + N P I G + + P
Sbjct: 341 EGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKP 386
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme,
dockerin type I\:polysaccharide...; acetyl-xylan,
esterases, metal-ION; 1.05A {Clostridium thermocellum}
SCOP: c.6.2.3 PDB: 2c79_A
Length = 216
Score = 34.2 bits (79), Expect = 0.064
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 252 QIKGTFFVSHKYTNYAS---VQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGG 308
+K TF V + N ++ ++ + GHEI S ++ S D +A
Sbjct: 31 NVKATFMVVGQRVNDSTAAIIRRMVNSGHEIGNHSWSYSGMANM----SPDQIRKSIADT 86
Query: 309 RLIIERFANISDGSVIGVRAPYLR 332
+I++ G + R
Sbjct: 87 NAVIQK--------YAGTTPKFFR 102
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A
{Streptomyces lividans} SCOP: c.6.2.3
Length = 195
Score = 34.1 bits (79), Expect = 0.067
Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 14/83 (16%)
Query: 252 QIKGTFFVS-HKYTNYAS-VQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGR 309
++ T F S V+ G ++ S TH + +E++ +
Sbjct: 30 GLRATMFNQGQYAAQNPSLVRAQVDAGMWVANHSYTHPHMTQL----GQAQMDSEISRTQ 85
Query: 310 LIIERFANISDGSVIGVRAPYLR 332
I G R
Sbjct: 86 QAIA--------GAGGGTPKLFR 100
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native
protein, microsporidian, chitin deacetylase, hydrolase,
inactive; 1.50A {Encephalitozoon cuniculi}
Length = 254
Score = 33.9 bits (78), Expect = 0.11
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 14/85 (16%)
Query: 252 QIKGTFFV---SHKYTNYAS-VQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAG 307
+K TF N + +GH +++ D + + S D +
Sbjct: 52 GVKATFSFTVNQKAVGNVGQLYRRAVEEGHNVALRVDPSMD--EGYQCLSQDALENNVDR 109
Query: 308 GRLIIERFANISDGSVIGVRAPYLR 332
I+ + G Y
Sbjct: 110 EIDTIDG--------LSGTEIRYAA 126
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Length = 240
Score = 33.8 bits (78), Expect = 0.11
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 252 QIKGTFFVSHKY-TNYAS-VQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGR 309
++ GTFFV+ + + ++ + +GH I S H D + D E+
Sbjct: 69 RVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNHSFHHPDLTTK----TADQIQDELDSVN 124
Query: 310 LIIERFANISDGSVIGVRAPY 330
+ + + +R P
Sbjct: 125 EEVYKITGKQ--DNLYLRPPR 143
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase,
peptidoglycan deacetylase, metalloenzyme, D275N mutant,
hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae}
SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Length = 431
Score = 33.4 bits (76), Expect = 0.17
Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 214 PNQVPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYTNY--ASVQE 271
+ +++ +TFN N + E IK TFFV K + V+
Sbjct: 231 DKKHQKVVALTFNDGPNPATTPQVLETLAKY-------DIKATFFVLGKNVSGNEDLVKR 283
Query: 272 LHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYL 331
+ +GH + S +H + S D+ ++ ++ + V+G + +
Sbjct: 284 IKSEGHVVGNHSWSHPILSQL----SLDEAKKQITDTEDVLTK--------VLGSSSKLM 331
Query: 332 R 332
R
Sbjct: 332 R 332
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase,
bacterial cell WALL, carbohydrate esterase; 1.7A
{Bacillus anthracis} SCOP: c.6.2.3
Length = 247
Score = 32.7 bits (75), Expect = 0.23
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 252 QIKGTFFVSHKY-TNYAS-VQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGR 309
++ TFFV+ Y + + +GH I S +H D + + E+
Sbjct: 81 KVPATFFVTGHYIKTQKDLLLRMKDEGHIIGNHSWSHPDFTAV----NDEKLREELTSVT 136
Query: 310 LIIERFANISDGSVIGVRAPY 330
I++ + + R P
Sbjct: 137 EEIKKVTGQKEVKYV--RPPR 155
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 33.3 bits (75), Expect = 0.28
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 139 DEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPD 198
E + K C +G CI + L C+ + DC D SDE C +P
Sbjct: 114 IEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDER-----DCGRTKAVCTRKYNPIPS 168
Query: 199 CFCSADGTRIPGGIEPNQVPQM 220
+G G +V
Sbjct: 169 VQLMGNGFHFLAGEPRGEVLDN 190
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 32.4 bits (74), Expect = 0.40
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 98 QISCPSGLAFDVDKQTCDW 116
Q SCP+GL F + C W
Sbjct: 426 QQSCPTGLVFSNSCKCCTW 444
Score = 31.2 bits (71), Expect = 0.93
Identities = 9/41 (21%), Positives = 11/41 (26%), Gaps = 6/41 (14%)
Query: 43 EGDCRDVVRCDQAGENGITRLAGVRCPNGLAFDIDRQTCDW 83
+ C G CP GL F + C W
Sbjct: 410 PRERSSFYSCA----AGRLFQ--QSCPTGLVFSNSCKCCTW 444
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 32.5 bits (73), Expect = 0.40
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 140 EPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCAL 196
V EG + G C+++ L C+ DC D+SDE C +
Sbjct: 64 SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWGIGS 120
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A
{Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Length = 308
Score = 30.7 bits (69), Expect = 1.3
Identities = 38/247 (15%), Positives = 65/247 (26%), Gaps = 50/247 (20%)
Query: 255 GTFFVSHKYTNYASVQELHRK-GHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIE 313
F V+ + V GHEI D + M I
Sbjct: 98 TIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWID----YQYMDEAQEREHM---LEAIR 150
Query: 314 RFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITASLGRVPIWPYTLYFRMPH 373
++ +G N + +M + F+YD PY P+
Sbjct: 151 ILTELTGERPLGWYTGRTGP--NTRRLVMEEGGFLYDCDTYDD-----DLPY----WEPN 199
Query: 374 KCNGNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRH 433
G H T + +D F G+ F L+
Sbjct: 200 NPTGKPHLV---IPYTLDT--------NDMRFT----------QVQGFNKGDDFFEYLKD 238
Query: 434 NFNRHFSTNRA-----PLGLHFHASWLKSKKEFKDELIKFIEEMLDRNDVYFVTMLQVIQ 488
F+ ++ +GLH ++ L +FIE V+F + + +
Sbjct: 239 AFDVLYAEGAEAPKMLSIGLHCRLIGRPARLAA---LQRFIEYAKSHEQVWFTRRVDIAR 295
Query: 489 WM--QNP 493
+P
Sbjct: 296 HWHATHP 302
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 30.6 bits (69), Expect = 1.5
Identities = 9/66 (13%), Positives = 16/66 (24%), Gaps = 2/66 (3%)
Query: 139 DEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPD 198
+ C G C + + D DE++ + P
Sbjct: 72 EGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSD--RAIEGATATSEYQTFFNPA 129
Query: 199 CFCSAD 204
F S +
Sbjct: 130 TFGSGE 135
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 30.3 bits (67), Expect = 2.0
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 138 TDEPVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALP 197
+ C + G C+ + L C+ DC D SDE+ C +D + +P
Sbjct: 61 VRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDC---EDVRAIDEDCSQYEPIP 117
Query: 198 DCFCSADGTRIPGGIEPNQVP 218
+A G I + V
Sbjct: 118 GSQKAALGYNILTQEDAQSVY 138
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 30.1 bits (68), Expect = 2.1
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 32 RPPEEYFRLTIEGDCRDVVRCDQAGENGITRLA-GVRCPNGLAFDIDRQT 80
R P + E V R G + + PNGLAF D QT
Sbjct: 154 RKPSQGCPADPELAHHSVYRLPPDG--SPLQRMADLDHPNGLAFSPDEQT 201
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 29.4 bits (66), Expect = 2.7
Identities = 7/84 (8%), Positives = 27/84 (32%), Gaps = 11/84 (13%)
Query: 279 ISVFSLTHKDDPKYWSGGSYDDWLAEMA-----GGRLIIERFANISDGSVIGVRAPYLRV 333
+S ++ H D + +A+ + GG+++ + +
Sbjct: 111 VSTYAFHHLTDDEKNVA------IAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQR 164
Query: 334 GGNKQFSMMTDQFFVYDASITASL 357
G ++ + + +++ +
Sbjct: 165 GFHQLANDLQTEYYTRIPVMQTIF 188
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 29.3 bits (64), Expect = 3.4
Identities = 14/108 (12%), Positives = 26/108 (24%), Gaps = 9/108 (8%)
Query: 150 CGNGECIDKTLFCDDKPDCKD--ESDENACSVEQDPNRAPDCDPTQCALPDCFCSADGTR 207
G+G+CI FCD E P +
Sbjct: 199 SGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGT 258
Query: 208 IPGG----IEPNQVPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGC 251
+ G + T+ + + + I G++ + C
Sbjct: 259 LNDGRSLYFNGLGKREARTVPLD---TRNIRLVQFYIQIGSKTSGITC 303
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 29.0 bits (65), Expect = 4.2
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 10/91 (10%)
Query: 150 CGNGECIDKTLFCDDKPDCKDESDENACSVEQDPNRAPDCDPTQCALPDCFCSADGTRIP 209
EC C P+ + P P P+ C + +I
Sbjct: 79 ENANECESYLDVCCGLPEGGVLPTPS-----PTPPVVPVLKPSFCGIR--NERGLDFKIT 131
Query: 210 GGI---EPNQVPQMITITFNGAVNVDNSDLY 237
G E + P M+ + + +
Sbjct: 132 GQTNEAEYGEFPWMVAVLKANVIPGSGEEQL 162
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural
genomics, seattle structural genomic for infectious
disease; 1.85A {Burkholderia pseudomallei}
Length = 321
Score = 28.8 bits (64), Expect = 4.4
Identities = 25/252 (9%), Positives = 63/252 (25%), Gaps = 57/252 (22%)
Query: 255 GTFFVSHKYTNY-ASVQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIE 313
F V + + GHEI+ + + + M RL +E
Sbjct: 103 TVFGVGMAIERHPELARAFVELGHEIACHGWRWIH----YQDMTPEREAEHM---RLGME 155
Query: 314 RFANISDGSVIGVRAPYLRVGGNKQFSMMTDQFFVYDASITASLGRVPIWPYTLYFRMPH 373
++ +G ++ + F+Y
Sbjct: 156 AIERVTGVRPLGWYTGRDSPNTHRL--VAEYGGFLY------------------DSDHYG 195
Query: 374 KCNGNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTGEQFGRLLRH 433
+ + ++ + + G + T + F LR
Sbjct: 196 DDLPFWMDVEVSGGASVPQLIVPYTLDANDMRFATPQGFN---------TADHFFHYLRD 246
Query: 434 NFNRHFSTNRA-----PLGLHFHAS-----WLKSKKEFKDELIKFIEEMLDRNDVYFVTM 483
F+ + +G+H + L +F++ + + V+
Sbjct: 247 AFDVLYEEGDEAPKMMSIGMHCRLLGRPGRFR--------ALQRFLDHIERHDRVWVARR 298
Query: 484 LQVIQWM--QNP 493
+++ + +P
Sbjct: 299 VEIARHWREHHP 310
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 28.9 bits (64), Expect = 4.6
Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 11/103 (10%)
Query: 404 TFDESLPGCHMVDSCSNIQTGEQFGRLLRHNFNRHFSTNRAPLGLHFHASWLKSKKEFKD 463
T E L G + D SN + L+ R + + G + ++ +
Sbjct: 146 TRKEDLAGGSLHDYVSNTE-NRALRELVAECGGRVCAFDNRATG--------REQEAQVE 196
Query: 464 ELIKFIEEMLDRNDVYFVT--MLQVIQWMQNPTELTSLRDFQE 504
+L+ +E ++ + + + ++ Q ++ LR E
Sbjct: 197 QLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPEERLRRVAE 239
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 28.5 bits (64), Expect = 5.2
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 34 PEEYFRLTIEGDCRDVVRCDQAGENGITRLA-GVRCPNGLAFDIDRQT 80
PEE + +E R V R G ++ PNGLAF
Sbjct: 140 PEEGYGGEMELPGRWVFRLAPDGT--LSAPIRDRVKPNGLAFLPSGNL 185
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase,
metal-bindin metalloprotease, protease; 2.30A
{Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Length = 492
Score = 28.9 bits (64), Expect = 5.4
Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 432 RHNFNRHFSTNRAPLGLHFHASWLKSKKEFKDELIKFIEEML 473
H+ H S+ P G H + W + ++++D++I ++ +L
Sbjct: 4 SHHH-HHHSSGLVPRGSHMASMWKEKVQQYEDQIINDLKGLL 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.445
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,971,030
Number of extensions: 544055
Number of successful extensions: 1411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 108
Length of query: 563
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 464
Effective length of database: 3,937,614
Effective search space: 1827052896
Effective search space used: 1827052896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.5 bits)