RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16054
(563 letters)
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 49.3 bits (118), Expect = 7e-09
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACSV 179
C + + C +G+CI + CD DC D SDE +C V
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPV 39
>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 37
Score = 48.6 bits (116), Expect = 1e-08
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACS 178
C + C +GECI + CD PDCKD+SDE C+
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 48.2 bits (115), Expect = 2e-08
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 141 PVCPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACS 178
P C G+ +C N CI + CD DC D SDE
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 48.3 bits (115), Expect = 2e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENACS 178
C + C +G+CI CD +C+D SDE+ +
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET 43
>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 47.8 bits (114), Expect = 2e-08
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENAC 177
C + C +G CI + CD + DCKD SDE C
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 47.5 bits (113), Expect = 3e-08
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENAC 177
C + C +G CI + CD DC D SDE
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 47.1 bits (112), Expect = 5e-08
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENAC 177
C C + CI + CD+ PDC+D SDE
Sbjct: 3 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 37
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3
subunit {Common earthworm (Lumbricus terrestris) [TaxId:
6398]}
Length = 41
Score = 44.4 bits (105), Expect = 3e-07
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 141 PVCPEGKLSC--GNGECIDKTLFCDDKPDCKDESDENACSV 179
P C E + C + +CI K CD DC++ DE C++
Sbjct: 1 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTL 41
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 42.5 bits (100), Expect = 2e-06
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 143 CPEGKLSCGNGECIDKTLFCDDKPDCKDESDENAC 177
K C +GECI C+ DC+D SDE
Sbjct: 7 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIK 41
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 42
Score = 41.7 bits (98), Expect = 3e-06
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 143 CPEGKLSC-GNGECIDKTLFCDDKPDCKDESDENACS 178
C + C +G CI CD DC D SDE +C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 40.9 bits (96), Expect = 6e-06
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 143 CPEGKLSC--GNGECIDKTLFCDDKPDCKDESDENAC 177
C G SC CI + CD + DC + SDE C
Sbjct: 5 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 39.8 bits (93), Expect = 1e-05
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 143 CPEGKLSCGNGE--CIDKTLFCDDKPDCKDESDENACS 178
C ++SCG CI + CD + DC DE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 42
Score = 39.5 bits (92), Expect = 2e-05
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 143 CPEGKLSCGN--GECIDKTLFCDDKPDCKDESDENAC 177
C E + C ECI LFCD + DC+D SDE+
Sbjct: 3 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE 39
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2
subunit {Common earthworm (Lumbricus terrestris) [TaxId:
6398]}
Length = 41
Score = 39.5 bits (92), Expect = 2e-05
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 143 CPEGKLSCGN--GECIDKTLFCDDKPDCKDESDENAC 177
C + CG ECI L CD DC + DE+
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail
(Coturnix coturnix) [TaxId: 9091]}
Length = 42
Score = 38.7 bits (90), Expect = 4e-05
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 143 CPEGKLSCGN-----GECIDKTLFCDDKPDCKDESDENAC 177
CP G+ C GEC + CD PDC D DE C
Sbjct: 2 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 37.6 bits (86), Expect = 0.002
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 21/115 (18%)
Query: 208 IPGG--IEPNQVPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKY-- 263
+P G I P ++ +T++ L D I N ++ TFFV+
Sbjct: 1 VPVGTPILQCTQPGLVALTYDDGPFTFTPQLLD-ILKQN-------DVRATFFVNGNNWA 52
Query: 264 -----TNYASVQELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIE 313
+N +++ + GH + + H D S D +++M
Sbjct: 53 NIEAGSNPDTIRRMRADGHLVGSHTYAHPDLNTLSS----ADRISQMRQLEEATR 103
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase
C-terminal domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 196
Score = 37.1 bits (85), Expect = 0.002
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 13/97 (13%)
Query: 220 MITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFV--SHKYTNYASVQELHRKGH 277
++ +TFN N + E IK TFFV + N V+ + +GH
Sbjct: 2 VVALTFNDGPNPATTPQVLETLAKY-------DIKATFFVLGKNVSGNEDLVKRIKSEGH 54
Query: 278 EISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIER 314
+ S +H + S D+ ++ ++ +
Sbjct: 55 VVGNHSWSHPILSQL----SLDEAKKQITDTEDVLTK 87
>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus
tridentatus) [TaxId: 6853]}
Length = 73
Score = 34.2 bits (78), Expect = 0.004
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 45 DCRDVVRCDQAGENGITRLAGVRCPNGLAFDIDRQTCDWKTNVKNCD 91
C C + RL CP GL ++ + CDW + C
Sbjct: 23 SCCSFYNCH----KCLARL--ENCPKGLHYNAYLKVCDWPSKA-GCT 62
Score = 31.5 bits (71), Expect = 0.037
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 100 SCPSGLAFDVDKQTCDWKAKVTNCN 124
+CP GL ++ + CDW +K C
Sbjct: 39 NCPKGLHYNAYLKVCDWPSKA-GCT 62
>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain
{Clostridium thermocellum [TaxId: 1515]}
Length = 204
Score = 36.4 bits (83), Expect = 0.005
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 17/117 (14%)
Query: 220 MITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYTNY---ASVQELHRKG 276
++ +TF+ + + + + +K TF V + N A ++ + G
Sbjct: 2 LVALTFDDGPDNVLTARVLDKLDKY-------NVKATFMVVGQRVNDSTAAIIRRMVNSG 54
Query: 277 HEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRV 333
HEI S ++ D +A +I+++A + R P L
Sbjct: 55 HEIGNHSWSYSGMANMS----PDQIRKSIADTNAVIQKYAGT---TPKFFRPPNLET 104
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces
lividans [TaxId: 1916]}
Length = 192
Score = 32.1 bits (72), Expect = 0.11
Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 17/138 (12%)
Query: 217 VPQMITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKYTNY--ASVQELHR 274
+ +TF+ + L + N ++ T F +Y + V+
Sbjct: 3 CNGYVGLTFDDGPSGSTQSLLN-ALRQN-------GLRATMFNQGQYAAQNPSLVRAQVD 54
Query: 275 KGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIERFANISDGSVIGVRAPYLRVG 334
G ++ S TH + +E++ + I G+ R PY
Sbjct: 55 AGMWVANHSYTHPHMTQLG----QAQMDSEISRTQQAIA---GAGGGTPKLFRPPYGETN 107
Query: 335 GNKQFSMMTDQFFVYDAS 352
+
Sbjct: 108 ATLRSVEAKYGLTEVIWD 125
>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase
BA0424 {Bacillus anthracis [TaxId: 1392]}
Length = 235
Score = 31.8 bits (71), Expect = 0.19
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 13/96 (13%)
Query: 220 MITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFV--SHKYTNYASVQELHRKGH 277
I +TF+ + ++ ++ TFFV + T + + +GH
Sbjct: 46 DIYLTFDNGYENGYTGKILDVLKEK-------KVPATFFVTGHYIKTQKDLLLRMKDEGH 98
Query: 278 EISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIE 313
I S +H D + + E+ I+
Sbjct: 99 IIGNHSWSHPDFTAV----NDEKLREELTSVTEEIK 130
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 301
Score = 31.2 bits (70), Expect = 0.27
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Query: 420 NIQTGEQFGRLLRHNFNRHFSTNRA-----PLGLHFHASWLKSKKEFKDELIKFIEEMLD 474
GEQF + L+ F+ + +GLH L + L +FI+
Sbjct: 222 GFNNGEQFFQYLKDAFDVLYEEGATAPKMLSIGLH---CRLIGRPARMAALERFIQYAQS 278
Query: 475 RNDVYFVTMLQVIQWM--QNP 493
+ V+F + + ++P
Sbjct: 279 HDKVWFARREDIARHWHREHP 299
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus
aureus [TaxId: 1280]}
Length = 136
Score = 28.3 bits (62), Expect = 1.5
Identities = 12/69 (17%), Positives = 21/69 (30%)
Query: 48 DVVRCDQAGENGITRLAGVRCPNGLAFDIDRQTCDWKTNVKNCDLLESLKQISCPSGLAF 107
D V+ G+ RL V P + + + ++E+ K+I
Sbjct: 16 DTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQ 75
Query: 108 DVDKQTCDW 116
DK
Sbjct: 76 RTDKYGRGL 84
>d1j7na2 d.92.1.14 (A:551-773) Anthrax toxin lethal factor, N- and
C-terminal domains {Bacillus anthracis [TaxId: 1392]}
Length = 223
Score = 28.3 bits (63), Expect = 2.2
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 414 MVDSCSNIQTGEQFGRLLRHNFNRHFSTNRAPLGLHFHASWLKSKKEFKDELIKFIEEML 473
+ + + HN A L L+ + ++S D + K ++
Sbjct: 19 EWNKALGLPKYTKLITFNVHNRYASNIVESAYLILNEWKNNIQS-----DLIKKVTNYLV 73
Query: 474 DRNDVYFVT 482
D N + T
Sbjct: 74 DGNGRFVFT 82
>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 221
Score = 27.8 bits (61), Expect = 2.9
Identities = 16/104 (15%), Positives = 24/104 (23%), Gaps = 9/104 (8%)
Query: 190 DPTQCALPDCFCSADGTRIPGG--IEPNQVPQMIT-----ITFNGAVNVDNSDLYDEIFN 242
A T +PG ++ MI +T GA+ V
Sbjct: 57 QNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMI 116
Query: 243 GNRQNPNGCQIKGTFFVSHKYTNYASVQELHRKGHEISVFSLTH 286
+ VS T E KG+ +
Sbjct: 117 PGKLVKGMGGA--MDLVSSAKTKVVVTMEHSAKGNAHKIMEKCT 158
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 543
Score = 28.2 bits (62), Expect = 3.0
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 25 VEQLCEGRPPEEYFRLT--IEGDC 46
+E + +GR P + T G C
Sbjct: 46 LEIILKGRDPRDAQHFTQRACGVC 69
>d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large
subunit {Desulfovibrio vulgaris [TaxId: 881]}
Length = 534
Score = 28.2 bits (62), Expect = 3.3
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 25 VEQLCEGRPPEEYFRLT--IEGDC 46
+E + +GR P + T G C
Sbjct: 43 LEIILKGRDPRDAQHFTQRTCGVC 66
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA
{Bacillus subtilis [TaxId: 1423]}
Length = 235
Score = 27.5 bits (60), Expect = 3.4
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 220 MITITFNGAVNVDNSDLYDEIFNGNRQNPNGCQIKGTFFVSHKY--TNYASVQELHRKGH 277
I +TF+ + ++ + ++ GTFFV+ + ++ + +GH
Sbjct: 44 TIYLTFDNGYENGYTPKVLDVLKKH-------RVTGTFFVTGHFVKDQPQLIKRMSDEGH 96
Query: 278 EISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIE 313
I S H D + D E+ +
Sbjct: 97 IIGNHSFHHPDLTTK----TADQIQDELDSVNEEVY 128
>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 537
Score = 27.8 bits (61), Expect = 3.8
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 25 VEQLCEGRPPEEYFRLT--IEGDC 46
+E + +GR P + T G C
Sbjct: 46 IETILKGRDPRDAQHFTQRTCGVC 69
>d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit
{Desulfovibrio gigas [TaxId: 879]}
Length = 530
Score = 27.5 bits (60), Expect = 4.7
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 25 VEQLCEGRPPEEYFRLT--IEGDC 46
+E + +GR P + T G C
Sbjct: 39 LEMILKGRDPRDAQHFTQRACGVC 62
>d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
{Desulfomicrobium baculatum [TaxId: 899]}
Length = 487
Score = 27.5 bits (60), Expect = 4.8
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 25 VEQLCEGRPPEEYFRLT--IEGDC 46
EQ+ GR P + ++ I G C
Sbjct: 39 FEQILRGRDPRDSSQIVQRICGVC 62
>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 27.2 bits (59), Expect = 6.0
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 6/130 (4%)
Query: 365 YTLYFRMPHKCNGNAHNCPSKSHPTWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQTG 424
TL++R P G S + + EL P F PG + D I
Sbjct: 163 VTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF----PGNDVDDQLKRIFRL 218
Query: 425 EQFGRLLRHNFNRHFSTNRAPLGLHFHASWLKSKKEFKDELIKFIEEMLDRNDVYFVTML 484
+ + S + + ++ +L N V ++
Sbjct: 219 LGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAE 278
Query: 485 QVIQ--WMQN 492
+ +Q + +
Sbjct: 279 EALQHPYFSD 288
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 27.0 bits (58), Expect = 6.9
Identities = 29/206 (14%), Positives = 54/206 (26%), Gaps = 21/206 (10%)
Query: 270 QELHRKGHEISVFS-------LTHKDDPKYWSGG------SYDDWLAEMAGGRLIIERFA 316
+ LH +G I+ + L PK + G S D L M G + +
Sbjct: 23 KLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLTPMEGDGDVSQDVP 82
Query: 317 NISDGSVIGVRAPY--LRVGGNKQFSMMTDQFFVYDASITASL--GRVPIWPYTLYFRMP 372
+ PY L N ++ V D ++ ++ P LYF
Sbjct: 83 TLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSS 142
Query: 373 HKCNGNAHNCP--SKSHPTWEMVMNELDRRDDPTFDESLPGCHM--VDSCSNIQTGEQFG 428
N + + + L T + +PG + +
Sbjct: 143 ACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPN 202
Query: 429 RLLRHNFNRHFSTNRAPLGLHFHASW 454
++ F + +
Sbjct: 203 DIMLEFFIEVADRVNKDTTILLNTFN 228
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis
protein RfaG {Escherichia coli [TaxId: 562]}
Length = 370
Score = 26.8 bits (57), Expect = 7.9
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 258 FVSHKYTNYASVQ--------ELHRKGHEISVFSLTHKDD 289
F +KY + +Q + +GH + V++ + + D
Sbjct: 4 FCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGD 43
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus
abyssi [TaxId: 29292]}
Length = 437
Score = 26.7 bits (57), Expect = 8.6
Identities = 18/132 (13%), Positives = 33/132 (25%), Gaps = 12/132 (9%)
Query: 270 QELHRKGHEISVFSLTHKDDPKYWSGGSYDDWLAEMAGGRLIIERFANISDG-SVIGVRA 328
+ L GHE+ VF+ P + + + G + ++ + +
Sbjct: 27 EALASLGHEVLVFT------PSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRIGG 80
Query: 329 PYLR-----VGGNKQFSMMTDQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAHNCP 383
L G F + L R P ++F H A
Sbjct: 81 GLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKK 140
Query: 384 SKSHPTWEMVMN 395
P +
Sbjct: 141 YFKIPAVFTIHR 152
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.445
Gapped
Lambda K H
0.267 0.0383 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,288,858
Number of extensions: 114918
Number of successful extensions: 374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 44
Length of query: 563
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 473
Effective length of database: 1,171,896
Effective search space: 554306808
Effective search space used: 554306808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.9 bits)