BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16059
(67 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And
Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 102 bits (253), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 54/66 (81%)
Query: 1 MGVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGW 60
MGV VET+SPGDG+T+PK GQ VVHYTG L DG KFDSSRDR PFKF LGK +VI+GW
Sbjct: 2 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW 61
Query: 61 DHGIAQ 66
+ G+AQ
Sbjct: 62 EEGVAQ 67
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 53/65 (81%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV VET+SPGDG+T+PK GQ VVHYTG L DG KFDSSRDR PFKF LGK +VI+GW+
Sbjct: 1 GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 62 HGIAQ 66
G+AQ
Sbjct: 61 EGVAQ 65
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex
With Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex
With Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of
The Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of
The Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And
Receptor For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And
Receptor For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And
Receptor For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin
Complexed With Fkbp12: Is The Cyclohexyl Moiety Part Of
The Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin
Complex Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 53/65 (81%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV VET+SPGDG+T+PK GQ VVHYTG L DG KFDSSRDR PFKF LGK +VI+GW+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 62 HGIAQ 66
G+AQ
Sbjct: 61 EGVAQ 65
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 53/65 (81%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV VET+SPGDG+T+PK GQ VVHYTG L DG KFDSSRDR PFKF LGK +VI+GW+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWE 60
Query: 62 HGIAQ 66
G+AQ
Sbjct: 61 EGVAQ 65
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 52/65 (80%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV VET+SPGDG+T+PK GQ VVHYTG L DG KFDSSRDR PFKF LGK +VI+GW
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQ 60
Query: 62 HGIAQ 66
G+AQ
Sbjct: 61 EGVAQ 65
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 52/65 (80%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV VET+SPGDG+T+PK GQ VVHYTG L DG KFDSSRDR PFKF LGK +VI+GW
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWA 60
Query: 62 HGIAQ 66
G+AQ
Sbjct: 61 EGVAQ 65
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 53/65 (81%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV VET+SPGDG+T+PK GQ VVHYTG L DG KFDSSRD+ PFKF LGK +VI+GW+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWE 60
Query: 62 HGIAQ 66
G+AQ
Sbjct: 61 EGVAQ 65
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 98.2 bits (243), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 54/65 (83%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV++ET+SPGDG+T+PK GQ VVHYTG L +G KFDSSRDR PFKFR+GK +VIKG++
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFE 60
Query: 62 HGIAQ 66
G AQ
Sbjct: 61 EGAAQ 65
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin
Fkbp- 12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of
High-Affinity Fkbp Ligands, And The X-Ray Crystal
Structures Of Their Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of
High-Affinity Fkbp Ligands, And The X-Ray Crystal
Structures Of Their Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of
High-Affinity Fkbp Ligands, And The X-Ray Crystal
Structures Of Their Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of
High-Affinity Fkbp Ligands, And The X-Ray Crystal
Structures Of Their Complexes With Fkbp12
Length = 107
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 52/64 (81%)
Query: 3 VDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDH 62
V VET+SPGDG+T+PK GQ VVHYTG L DG KFDSSRDR PFKF LGK +VI+GW+
Sbjct: 2 VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEE 61
Query: 63 GIAQ 66
G+AQ
Sbjct: 62 GVAQ 65
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 52/65 (80%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV VET+SPGDG+T+PK GQ VVHYTG L DG K DSSRDR PFKF LGK +VI+GW+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 62 HGIAQ 66
G+AQ
Sbjct: 61 EGVAQ 65
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic
Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic
Ligand
Length = 107
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 52/65 (80%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV VET+SPGDG+T+PK GQ VVHYTG L DG K DSSRDR PFKF LGK +VI+GW+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 62 HGIAQ 66
G+AQ
Sbjct: 61 EGVAQ 65
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With
Rapamycin
Length = 107
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 53/65 (81%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV VET+SPGDG+T+PK GQ VVHYTG L DG KFDSSRDR PFKF LGK +VI+G++
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFE 60
Query: 62 HGIAQ 66
G+AQ
Sbjct: 61 EGVAQ 65
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 52/66 (78%)
Query: 1 MGVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGW 60
MGV V TL+ GD TYPK GQV VVHYTGTL DG FDSSR RG PF+F +G+G+VI+GW
Sbjct: 1 MGVQVVTLAAGDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGW 60
Query: 61 DHGIAQ 66
D G+AQ
Sbjct: 61 DEGVAQ 66
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With
Rapamycin
Length = 107
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 52/65 (80%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV VET+SPGDG+T+PK GQ VVHYTG L DG KFDSSRDR PFKF LGK +VI+G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLE 60
Query: 62 HGIAQ 66
G+AQ
Sbjct: 61 EGVAQ 65
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 48/64 (75%)
Query: 3 VDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDH 62
V ++ +SPGDG T+PK G +V +HYTGTL +G KFDSS DRG PF+ +G G VIKGWD
Sbjct: 8 VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDV 67
Query: 63 GIAQ 66
GI +
Sbjct: 68 GIPK 71
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease
Target Gilaa.00840.A
Length = 130
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 46/63 (73%)
Query: 3 VDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDH 62
++ + L+PGDG T P+ G+ V VHY G DG +FDSSR RG PF+F LG G+VIKGWD
Sbjct: 26 LEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQ 85
Query: 63 GIA 65
G+A
Sbjct: 86 GVA 88
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type
Peptidylprolyl Isomerase
Length = 135
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 39/55 (70%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G G P G V VHY GTL +GTKFDSSRDRG F F LG+G+VIKGWD G+A
Sbjct: 24 GQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVA 78
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ E L+ G G + GQ V VHYTG LTDG KFDSS+DR PF+F LG G VIKGWD
Sbjct: 105 GLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWD 163
Query: 62 HGI 64
G+
Sbjct: 164 EGV 166
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 37/48 (77%)
Query: 17 PKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGI 64
P+ G V VHYTGTL DG KFDSSRDR FKF+LG+G VIKGWD GI
Sbjct: 43 PEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGI 90
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 37/48 (77%)
Query: 17 PKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGI 64
P+ G V VHYTGTL DG KFDSSRDR FKF+LG+G VIKGWD GI
Sbjct: 27 PEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGI 74
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ E L+ G G + GQ V VHYTG LTDG KFDSS+DR PF F LG G VIKGWD
Sbjct: 105 GLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWD 163
Query: 62 HGI 64
G+
Sbjct: 164 EGV 166
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans
Isomerase With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans
Isomerase With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ E L+ G G + GQ V VHYTG LTDG KFDSS+DR PF F LG G VIKGWD
Sbjct: 9 GLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGWD 67
Query: 62 HGI 64
G+
Sbjct: 68 EGV 70
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ E L+ G G + GQ V VHYTG LTDG KFDSS+DR PF F LG G VIKGWD
Sbjct: 105 GLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWD 163
Query: 62 HGI 64
G+
Sbjct: 164 EGV 166
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ E L+ G G + GQ V VHYTG LTDG KFDSS+DR PF F LG G VIKGWD
Sbjct: 105 GLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWD 163
Query: 62 HGI 64
G+
Sbjct: 164 EGV 166
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans
Isomerase With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans
Isomerase With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ E L+ G G + GQ V VHYTG LTDG KFDSS+DR PF F LG G VIKGWD
Sbjct: 9 GLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWD 67
Query: 62 HGI 64
G+
Sbjct: 68 EGV 70
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ E L+ G G + GQ V VHYTG LTDG KFDSS+DR PF F LG G VIKGWD
Sbjct: 29 GLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWD 87
Query: 62 HGI 64
G+
Sbjct: 88 EGV 90
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ E L+ G G + GQ V VHYTG LTDG KFDSS+DR PF F LG G VIKGWD
Sbjct: 13 GLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWD 71
Query: 62 HGI 64
G+
Sbjct: 72 EGV 74
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51,
Involved In Steroid Receptor Complexes
Length = 457
Score = 69.3 bits (168), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/55 (58%), Positives = 37/55 (67%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G+G+ P G V VHY G L++G KFDSS DR PF F LGKG VIK WD G+A
Sbjct: 41 GNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVA 95
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 37/55 (67%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G+G+ P G V VHY G L++G KFDSS DR PF F LGKG VIK WD G+A
Sbjct: 45 GNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVA 99
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 37/55 (67%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G+G+ P G V VHY G L++G KFDSS DR PF F LGKG VIK WD G+A
Sbjct: 45 GNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVA 99
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 37/55 (67%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G+G+ P G V VHY G L++G KFDSS DR PF F LGKG VIK WD G+A
Sbjct: 29 GNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVA 83
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of
Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51
With 2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-
Yl]carbonyl}oxy)propyl]phenoxy}acetic Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-
Yl]carbonyl}oxy)propyl]phenoxy}acetic Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51
With 2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 37/55 (67%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G+G+ P G V VHY G L++G KFDSS DR PF F LGKG VIK WD G+A
Sbjct: 29 GNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVA 83
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ E L+ G G + GQ V VHYTG LTDG KF SS+DR PF F LG G VIKGWD
Sbjct: 105 GLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWD 163
Query: 62 HGI 64
G+
Sbjct: 164 EGV 166
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In
Complex With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In
Complex With Tetrapeptide Alpf
Length = 126
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 2 GVDVETLSPGDG--QTYPKPGQVVVVHYTGTL-TDGTKFDSSRDRGVPFKFRLGKGDVIK 58
GV L G+G + PK G V VHY G L + G FDSSR+R VPFKF LG+G+VIK
Sbjct: 16 GVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIK 75
Query: 59 GWDHGIA 65
GWD +A
Sbjct: 76 GWDICVA 82
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51,
Involved In Steroid Receptor Complexes
Length = 457
Score = 67.0 bits (162), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/55 (56%), Positives = 35/55 (63%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G G+ P G V VHY G L +G KFDSS DR PF F +GKG VIK WD G+A
Sbjct: 41 GHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVA 95
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 66.2 bits (160), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/55 (58%), Positives = 37/55 (67%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G+G+ P G V VHY G L++G KFDSS DR PF F LGKG VIK WD G+A
Sbjct: 45 GNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVA 99
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human
Fkbp52
Length = 140
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 35/55 (63%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G G P G V VHYTG L DGTKFDSS DR F F LGKG+VIK WD IA
Sbjct: 41 GTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIA 95
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 35/55 (63%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G G P G V VHYTG L DGTKFDSS DR F F LGKG+VIK WD IA
Sbjct: 45 GTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIA 99
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 35/55 (63%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G G P G V VHYTG L DGTKFDSS DR F F LGKG+VIK WD IA
Sbjct: 61 GTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIA 115
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 35/55 (63%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G G P G V VHYTG L DGTKFDSS DR F F LGKG+VIK WD +A
Sbjct: 40 GTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVA 94
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 2 GVDVETLSPGDG--QTYPKPGQVVVVHYTGTL-TDGTKFDSSRDRGVPFKFRLGKGDVIK 58
GV L GD + PK G V VHY G L + G FDSS DR VPFKF L +G+VIK
Sbjct: 17 GVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIK 76
Query: 59 GWDHGIA 65
GWD ++
Sbjct: 77 GWDICVS 83
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of
Fkbp35 From Plasmodium Falciparum
Length = 135
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 2 GVDVETLSPGDG--QTYPKPGQVVVVHYTGTL-TDGTKFDSSRDRGVPFKFRLGKGDVIK 58
GV L GD + PK G V VHY G L + G FDSS DR VPFKF L +G+VIK
Sbjct: 17 GVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIK 76
Query: 59 GWDHGIA 65
GWD ++
Sbjct: 77 GWDICVS 83
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 32/45 (71%)
Query: 20 GQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGI 64
GQ++ HY G L +G FDSS +RG P FR+G G+VIKGWD GI
Sbjct: 30 GQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGI 74
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 18 KPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGI 64
+ G V+ +HYTG L DGT+FDSS + PF F LG G VIKGWD G+
Sbjct: 7 RKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGL 53
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 8 LSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSS-------RDRGVPFKFRLGKGDVIKGW 60
L GD +PK G VV YTGTL DGT FD++ + P F++G G VI+GW
Sbjct: 8 LKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGW 67
Query: 61 DHGI 64
D +
Sbjct: 68 DEAL 71
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ + ++ G G+ P VHYTG L DGT FDSSR+RG P FR +VIKGW
Sbjct: 38 GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGWT 95
Query: 62 HGI 64
+
Sbjct: 96 EAL 98
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 8 LSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSS-------RDRGVPFKFRLGKGDVIKGW 60
L GD +PK G VV YTGTL DGT FD++ + P F++G G VI+GW
Sbjct: 11 LKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGW 70
Query: 61 DHGI 64
D +
Sbjct: 71 DEAL 74
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 48.5 bits (114), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ + + G G+ PK VVV+Y GTL DG +FD+S RG P FRL VI GW
Sbjct: 122 GLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 178
Query: 62 HGI 64
G+
Sbjct: 179 EGL 181
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 48.5 bits (114), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ + + G G+ PK VVV+Y GTL DG +FD+S RG P FRL VI GW
Sbjct: 122 GLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 178
Query: 62 HGI 64
G+
Sbjct: 179 EGL 181
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 2 GVDVETLSPGDGQTYPKPGQ--VVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKG 59
G+ + ++ G+G KPG+ V V YTG L DGT FDS+ G P F++ + VI G
Sbjct: 107 GLQYKVINSGNGV---KPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPG 161
Query: 60 WDHGI 64
W +
Sbjct: 162 WTEAL 166
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 2 GVDVETLSPGDGQTYPKPGQ--VVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKG 59
G+ + ++ G+G KPG+ V V YTG L DGT FDS+ G P F++ + VI G
Sbjct: 31 GLQYKVINSGNGV---KPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPG 85
Query: 60 WDHGI 64
W +
Sbjct: 86 WTEAL 90
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 18 KPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGI 64
+ V+VH+T L DGT +S+R+ G P FRLG + +G + +
Sbjct: 26 QSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHL 72
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 3 VDVETLS-PGDGQTYPKPGQVVVVHYTGTL-TDGTKFDSSR--DRGVPFKFRLGKGDVIK 58
V +E L P K G +++VHY G L DG+ F S+ + G P F LG + +K
Sbjct: 14 VKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALK 73
Query: 59 GWDHGI 64
GWD G+
Sbjct: 74 GWDQGL 79
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 6 ETLSPGD-GQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGI 64
+TL PG G + P GQVV VH +L +GT+ + F LG DVI+ D +
Sbjct: 48 KTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSV 103
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human
Fk506-Binding Protein 8
Length = 118
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 6 ETLSPGD-GQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGI 64
+TL PG G + P GQVV VH +L +GT+ + F LG DVI+ D +
Sbjct: 18 KTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSV 73
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 6 ETLSPGD-GQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGI 64
+TL PG G + P GQVV VH +L +GT+ + F LG DVI+ D +
Sbjct: 16 KTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSV 71
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 6 ETLSPGD-GQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGI 64
+TL PG G + P GQVV VH +L +GT+ + F LG DVI+ D +
Sbjct: 22 KTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSV 77
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 2 GVDVETLSPGDGQTYPKPGQV--VVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKG 59
G+ + L+PG G PKP V V Y G L DG FD S P FRL VI G
Sbjct: 118 GILMTELTPGTG---PKPDANGRVEVRYVGRLPDGKIFDQSTQ---PQWFRLDS--VISG 169
Query: 60 WDHGI 64
W +
Sbjct: 170 WTSAL 174
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 13/53 (24%)
Query: 25 VHYTGTLTDGTKFDSS-----RDRGV--------PFKFRLGKGDVIKGWDHGI 64
V Y G L G FD+S ++ G+ P +F +G+G +I+G++ +
Sbjct: 10 VDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62
>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human
Aryl-Hydrocarbon Receptor-Interacting Protein (Aip)
Length = 165
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 26 HYTGTLTD--GTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
HY +D GT D SR RG P + +GK + W+
Sbjct: 36 HYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWE 73
>pdb|2EEB|A Chain A, Solution Structure Of The 22th Filamin Domain From Human
Filamin-B
Length = 106
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 26 HYTGTLTDGTKFDSSRDRGVPFKFRLGK 53
H G T KF+ S G PFK R+G+
Sbjct: 74 HENGVHTIDVKFNGSHVVGSPFKVRVGE 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.141 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,496,090
Number of Sequences: 62578
Number of extensions: 90581
Number of successful extensions: 198
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 64
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)