Query psy16059
Match_columns 67
No_of_seqs 172 out of 1072
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 19:47:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0544|consensus 99.9 1E-21 2.2E-26 102.8 7.3 66 1-66 1-66 (108)
2 COG0545 FkpA FKBP-type peptidy 99.8 3.6E-19 7.8E-24 103.9 6.6 61 2-65 102-162 (205)
3 KOG0549|consensus 99.7 6.2E-17 1.3E-21 93.2 8.0 64 2-65 69-133 (188)
4 PRK11570 peptidyl-prolyl cis-t 99.7 1.1E-16 2.4E-21 94.3 8.6 63 1-66 102-164 (206)
5 PRK10902 FKBP-type peptidyl-pr 99.6 1.6E-15 3.6E-20 92.3 8.4 63 1-66 146-208 (269)
6 TIGR03516 ppisom_GldI peptidyl 99.6 1.2E-14 2.6E-19 84.1 8.7 63 2-66 70-134 (177)
7 PF00254 FKBP_C: FKBP-type pep 99.5 4.9E-14 1.1E-18 73.7 6.7 54 13-66 1-54 (94)
8 KOG0552|consensus 99.5 1.3E-13 2.9E-18 82.0 6.8 62 2-65 121-184 (226)
9 PRK15095 FKBP-type peptidyl-pr 99.5 3.3E-13 7.2E-18 76.7 7.2 51 16-66 4-54 (156)
10 COG1047 SlpA FKBP-type peptidy 99.4 5.2E-12 1.1E-16 72.7 6.8 51 16-66 2-52 (174)
11 PRK10737 FKBP-type peptidyl-pr 99.3 2.2E-11 4.9E-16 71.4 6.8 49 17-66 3-51 (196)
12 KOG0543|consensus 99.2 4E-11 8.6E-16 76.0 4.8 57 9-66 1-57 (397)
13 KOG0543|consensus 98.5 5.5E-07 1.2E-11 57.5 7.2 61 2-66 85-147 (397)
14 COG0544 Tig FKBP-type peptidyl 98.4 5.2E-07 1.1E-11 58.5 5.3 47 17-66 158-204 (441)
15 TIGR00115 tig trigger factor. 98.3 2.3E-06 5.1E-11 54.6 5.9 48 16-66 146-193 (408)
16 PRK01490 tig trigger factor; P 98.3 2.5E-06 5.4E-11 54.9 5.9 48 16-66 157-204 (435)
17 KOG0545|consensus 98.2 2.5E-06 5.4E-11 52.4 3.7 64 2-65 11-77 (329)
18 PHA02122 hypothetical protein 82.0 3.7 8.1E-05 19.8 3.2 20 18-38 39-58 (65)
19 PRK11536 6-N-hydroxylaminopuri 62.0 9.1 0.0002 23.3 2.3 23 2-28 143-165 (223)
20 PF05688 DUF824: Salmonella re 59.4 17 0.00038 16.7 3.8 36 14-54 6-41 (47)
21 PF11012 DUF2850: Protein of u 59.0 22 0.00048 18.2 3.1 38 17-54 13-51 (79)
22 COG4922 Uncharacterized protei 48.6 47 0.001 18.5 4.0 44 16-64 70-114 (129)
23 COG2258 Uncharacterized protei 48.5 17 0.00038 22.0 2.0 25 2-30 140-164 (210)
24 COG0024 Map Methionine aminope 41.8 87 0.0019 19.6 5.3 43 15-64 85-133 (255)
25 TIGR00501 met_pdase_II methion 38.5 1E+02 0.0022 19.3 5.1 31 16-53 74-104 (295)
26 PRK14499 molybdenum cofactor b 37.8 36 0.00079 21.7 2.3 20 2-25 286-305 (308)
27 PTZ00053 methionine aminopepti 34.5 1E+02 0.0023 21.0 4.1 24 16-40 233-256 (470)
28 cd01089 PA2G4-like Related to 33.0 1.1E+02 0.0024 18.1 5.1 32 15-53 81-112 (228)
29 CHL00075 rpl21 ribosomal prote 31.0 67 0.0014 17.4 2.4 24 4-27 3-26 (108)
30 PF13757 VIT_2: Vault protein 27.2 96 0.0021 15.8 2.4 17 46-62 47-63 (78)
31 PF14743 DNA_ligase_OB_2: DNA 26.6 53 0.0012 16.0 1.4 19 17-35 38-56 (66)
32 PF03562 MltA: MltA specific i 26.5 69 0.0015 18.5 2.1 28 10-39 85-112 (158)
33 TIGR02178 yeiP elongation fact 25.9 1.5E+02 0.0033 17.6 4.3 25 19-43 31-56 (186)
34 PRK12426 elongation factor P; 25.7 1.5E+02 0.0033 17.6 5.1 20 24-43 36-56 (185)
35 PF11454 DUF3016: Protein of u 25.7 1.1E+02 0.0023 17.4 2.7 22 21-42 86-107 (141)
36 TIGR03773 anch_rpt_wall putati 25.6 2.2E+02 0.0048 19.8 4.5 30 21-54 413-442 (513)
37 cd01090 Creatinase Creatine am 25.0 1.6E+02 0.0035 17.5 4.6 31 15-52 75-105 (228)
38 PF11874 DUF3394: Domain of un 22.5 1.8E+02 0.004 17.3 4.3 32 17-54 72-103 (183)
39 PF00829 Ribosomal_L21p: Ribos 22.2 78 0.0017 16.6 1.6 22 5-26 2-23 (96)
40 KOG1546|consensus 21.3 78 0.0017 20.8 1.7 14 17-30 135-148 (362)
41 TIGR00686 phnA alkylphosphonat 21.3 1.4E+02 0.0031 16.3 2.5 24 7-31 42-65 (109)
42 TIGR00495 crvDNA_42K 42K curve 21.0 2.6E+02 0.0056 18.4 5.3 32 15-53 99-130 (389)
No 1
>KOG0544|consensus
Probab=99.87 E-value=1e-21 Score=102.75 Aligned_cols=66 Identities=73% Similarity=1.325 Sum_probs=63.4
Q ss_pred CCeEEEEEecCCCccCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhcC
Q psy16059 1 MGVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIAQ 66 (67)
Q Consensus 1 ~Gv~~~~~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~~ 66 (67)
||+.++++.+|+|...|..|++|++||++.+.||+.||||.+++.|+.|.+|.+++|+||+|++.+
T Consensus 1 mGv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~q 66 (108)
T KOG0544|consen 1 MGVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQ 66 (108)
T ss_pred CCceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchh
Confidence 899999999999988899999999999999999999999999999999999999999999999864
No 2
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.6e-19 Score=103.92 Aligned_cols=61 Identities=59% Similarity=1.045 Sum_probs=58.4
Q ss_pred CeEEEEEecCCCccCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhc
Q psy16059 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65 (67)
Q Consensus 2 Gv~~~~~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~ 65 (67)
||+|++++.|.|.. |..+|.|.+||++++.||++||+|+.+++|+.|.|| ++|+||.++|.
T Consensus 102 gl~y~~~~~G~G~~-~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~ 162 (205)
T COG0545 102 GLQYKVLKAGDGAA-PKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQ 162 (205)
T ss_pred CcEEEEEeccCCCC-CCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHh
Confidence 79999999999996 999999999999999999999999999999999995 99999999986
No 3
>KOG0549|consensus
Probab=99.72 E-value=6.2e-17 Score=93.23 Aligned_cols=64 Identities=50% Similarity=0.914 Sum_probs=56.7
Q ss_pred CeEEEEEec-CCCccCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhc
Q psy16059 2 GVDVETLSP-GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65 (67)
Q Consensus 2 Gv~~~~~~~-g~g~~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~ 65 (67)
.|+..+++. -.|..++..||.+.+||++.+.||+.|||||..++|+.|.||.+++|+||+++|.
T Consensus 69 ~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~ 133 (188)
T KOG0549|consen 69 ELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLL 133 (188)
T ss_pred ceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhh
Confidence 355666654 3388888999999999999999999999999999999999999999999999986
No 4
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.71 E-value=1.1e-16 Score=94.34 Aligned_cols=63 Identities=43% Similarity=0.745 Sum_probs=58.3
Q ss_pred CCeEEEEEecCCCccCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhcC
Q psy16059 1 MGVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIAQ 66 (67)
Q Consensus 1 ~Gv~~~~~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~~ 66 (67)
.|++|+++++|+|.. |..+|.|.+||++++.||++|++|+..+.|+.|.+ +.+++||+++|..
T Consensus 102 sGl~y~vi~~G~G~~-p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l--~~vipG~~eaL~~ 164 (206)
T PRK11570 102 SGLQFRVLTQGEGAI-PARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPV--NGVIPGWIEALTL 164 (206)
T ss_pred CCcEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEe--echhhHHHHHHcC
Confidence 389999999999985 99999999999999999999999998889999999 5799999999964
No 5
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.64 E-value=1.6e-15 Score=92.30 Aligned_cols=63 Identities=44% Similarity=0.834 Sum_probs=57.9
Q ss_pred CCeEEEEEecCCCccCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhcC
Q psy16059 1 MGVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIAQ 66 (67)
Q Consensus 1 ~Gv~~~~~~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~~ 66 (67)
.||+|+++++|+|.. |..||.|.+||++++.||++|++++..+.|+.|.+ +.++|||+++|..
T Consensus 146 sGl~y~Vi~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~ 208 (269)
T PRK10902 146 TGLLYKVEKEGTGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKN 208 (269)
T ss_pred CccEEEEEeCCCCCC-CCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhc
Confidence 489999999999985 89999999999999999999999998888999998 5799999999863
No 6
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.60 E-value=1.2e-14 Score=84.09 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=55.9
Q ss_pred CeEEEEEec--CCCccCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhcC
Q psy16059 2 GVDVETLSP--GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIAQ 66 (67)
Q Consensus 2 Gv~~~~~~~--g~g~~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~~ 66 (67)
|++|.+++. |++. .|..||.|.+||++++.||++|++++.. .|+.|.+|.+++++||+++|..
T Consensus 70 Gl~Y~v~~~~~g~g~-~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~ 134 (177)
T TIGR03516 70 GFWYYYNQKDTGEGT-TPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKL 134 (177)
T ss_pred ccEEEEEEecCCCCC-cCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcC
Confidence 788988865 6666 4899999999999999999999999874 6999999999999999999964
No 7
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.54 E-value=4.9e-14 Score=73.67 Aligned_cols=54 Identities=50% Similarity=0.914 Sum_probs=49.3
Q ss_pred CccCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhcC
Q psy16059 13 GQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIAQ 66 (67)
Q Consensus 13 g~~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~~ 66 (67)
|+.+|+.||.|.+||++++.+|+.|++++....|+.|.+|.+++++||+++|..
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~ 54 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIG 54 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhccc
Confidence 455689999999999999999999999987778999999999999999999864
No 8
>KOG0552|consensus
Probab=99.49 E-value=1.3e-13 Score=81.99 Aligned_cols=62 Identities=50% Similarity=0.916 Sum_probs=58.1
Q ss_pred CeEEEEEecCCCccCCCCCCEEEEEEEEEeC-CCCEEeccCCCCccEE-EEeCCCCccHHHHHhhc
Q psy16059 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLT-DGTKFDSSRDRGVPFK-FRLGKGDVIKGWDHGIA 65 (67)
Q Consensus 2 Gv~~~~~~~g~g~~~~~~gd~V~v~y~~~~~-dg~~~~~s~~~~~p~~-~~lG~~~~~~g~e~~l~ 65 (67)
||+|+.++.|.|+. |..|+.|.++|.+++. +|++|++++.. .|+. |.+|.+.+|+||+.+|.
T Consensus 121 Gl~y~D~~vG~G~~-a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~ 184 (226)
T KOG0552|consen 121 GLRYEDLRVGSGPS-AKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVE 184 (226)
T ss_pred CcEEEEEEecCCCC-CCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhh
Confidence 89999999999995 9999999999999999 99999999876 7888 99999999999999885
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.47 E-value=3.3e-13 Score=76.75 Aligned_cols=51 Identities=33% Similarity=0.612 Sum_probs=47.2
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhcC
Q psy16059 16 YPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIAQ 66 (67)
Q Consensus 16 ~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~~ 66 (67)
.++.++.|.+||++++.||++|++|+..+.|+.|.+|.+++++||+++|..
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~g 54 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLG 54 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcC
Confidence 378899999999999999999999987678999999999999999999964
No 10
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.2e-12 Score=72.73 Aligned_cols=51 Identities=29% Similarity=0.540 Sum_probs=46.9
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhcC
Q psy16059 16 YPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIAQ 66 (67)
Q Consensus 16 ~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~~ 66 (67)
++++||.|+++|++++.||++||+|...+.|+.|.+|.+++++|||+||..
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g 52 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLG 52 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhC
Confidence 368899999999999999999999987568999999999999999999963
No 11
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.28 E-value=2.2e-11 Score=71.43 Aligned_cols=49 Identities=24% Similarity=0.412 Sum_probs=45.3
Q ss_pred CCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhcC
Q psy16059 17 PKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIAQ 66 (67)
Q Consensus 17 ~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~~ 66 (67)
+++++.|+++|++++.||++|++|+. ..|+.|.+|.++++|+||+||..
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G 51 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEG 51 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcC
Confidence 67899999999999999999999986 48999999999999999999963
No 12
>KOG0543|consensus
Probab=99.18 E-value=4e-11 Score=76.03 Aligned_cols=57 Identities=68% Similarity=1.132 Sum_probs=52.9
Q ss_pred ecCCCccCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhcC
Q psy16059 9 SPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIAQ 66 (67)
Q Consensus 9 ~~g~g~~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~~ 66 (67)
++|.|...|..||.|.+||++++.||+.||||.+ +.|+.|.+|.+.++.||..++.+
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~t 57 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVAT 57 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCcccccccccccc
Confidence 4688888899999999999999999999999998 78999999999999999988764
No 13
>KOG0543|consensus
Probab=98.55 E-value=5.5e-07 Score=57.54 Aligned_cols=61 Identities=36% Similarity=0.644 Sum_probs=50.4
Q ss_pred CeEEEEEecCCC-ccCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCC-CCccHHHHHhhcC
Q psy16059 2 GVDVETLSPGDG-QTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGK-GDVIKGWDHGIAQ 66 (67)
Q Consensus 2 Gv~~~~~~~g~g-~~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~-~~~~~g~e~~l~~ 66 (67)
+|.++|+++|.| ...|..|..|.+||.+++.++ +|+++. .++.|.+|+ ..++.||+.||.+
T Consensus 85 ~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~ 147 (397)
T KOG0543|consen 85 GIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE---LRFEFGEGEDIDVIEGLEIALRM 147 (397)
T ss_pred ceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc---cceEEecCCccchhHHHHHHHHh
Confidence 688999999999 556999999999999998666 777643 347888887 4799999999853
No 14
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=5.2e-07 Score=58.54 Aligned_cols=47 Identities=26% Similarity=0.671 Sum_probs=42.1
Q ss_pred CCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhcC
Q psy16059 17 PKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIAQ 66 (67)
Q Consensus 17 ~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~~ 66 (67)
++.||.|+|+|.++. ||..|+.... ..+.+.||++++||||+++|..
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~lGs~~fipgFe~~LvG 204 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLELGSGRFIPGFEDQLVG 204 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEEcCCCchhhHHhhhcc
Confidence 788999999999986 9999998655 6799999999999999999863
No 15
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.31 E-value=2.3e-06 Score=54.64 Aligned_cols=48 Identities=25% Similarity=0.623 Sum_probs=42.3
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhcC
Q psy16059 16 YPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIAQ 66 (67)
Q Consensus 16 ~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~~ 66 (67)
.++.||.|.++|+++. +|+.|+++.. .++.|.+|.+.+++||+++|..
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G 193 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVG 193 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEECCCCcchhHHHHhCC
Confidence 3788999999999986 9999988654 7899999999999999999863
No 16
>PRK01490 tig trigger factor; Provisional
Probab=98.30 E-value=2.5e-06 Score=54.95 Aligned_cols=48 Identities=25% Similarity=0.645 Sum_probs=42.3
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCCCccHHHHHhhcC
Q psy16059 16 YPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIAQ 66 (67)
Q Consensus 16 ~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~~ 66 (67)
.++.||.|.++|.++. +|+.|+++.. .++.|.+|.+.+++||+++|..
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G 204 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVG 204 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCC
Confidence 3799999999999997 9999987654 6899999999999999999863
No 17
>KOG0545|consensus
Probab=98.18 E-value=2.5e-06 Score=52.36 Aligned_cols=64 Identities=27% Similarity=0.415 Sum_probs=54.2
Q ss_pred CeEEEEEecCCCccC-CCCCCEEEEEEEEEeC--CCCEEeccCCCCccEEEEeCCCCccHHHHHhhc
Q psy16059 2 GVDVETLSPGDGQTY-PKPGQVVVVHYTGTLT--DGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65 (67)
Q Consensus 2 Gv~~~~~~~g~g~~~-~~~gd~V~v~y~~~~~--dg~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l~ 65 (67)
||+++++..|.|... ...|..|.+||+.... .++++|+|..-++|..+.+|..--+|-||..|.
T Consensus 11 gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~ 77 (329)
T KOG0545|consen 11 GVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILT 77 (329)
T ss_pred hhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHH
Confidence 788999999998631 3579999999999876 456899998888999999998777899998764
No 18
>PHA02122 hypothetical protein
Probab=81.98 E-value=3.7 Score=19.78 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=17.0
Q ss_pred CCCCEEEEEEEEEeCCCCEEe
Q psy16059 18 KPGQVVVVHYTGTLTDGTKFD 38 (67)
Q Consensus 18 ~~gd~V~v~y~~~~~dg~~~~ 38 (67)
..||.|.++|.... +|+.|-
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEE
Confidence 56899999999986 888765
No 19
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=62.05 E-value=9.1 Score=23.28 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=18.4
Q ss_pred CeEEEEEecCCCccCCCCCCEEEEEEE
Q psy16059 2 GVDVETLSPGDGQTYPKPGQVVVVHYT 28 (67)
Q Consensus 2 Gv~~~~~~~g~g~~~~~~gd~V~v~y~ 28 (67)
|.|++++++|. +..||.|.+--+
T Consensus 143 G~Y~RVL~~G~----V~~GD~v~l~~r 165 (223)
T PRK11536 143 GWLYRVIAPGK----VSADAPLELVSR 165 (223)
T ss_pred EEEEEEECCcE----EcCCCEEEEEeC
Confidence 78999998875 677898887655
No 20
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=59.40 E-value=17 Score=16.71 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=27.5
Q ss_pred ccCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCC
Q psy16059 14 QTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKG 54 (67)
Q Consensus 14 ~~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~ 54 (67)
..+++.|+.+.+.-+.+..+|.++-. .|+.+..|.+
T Consensus 6 aakaK~Ge~I~ltVt~kda~G~pv~n-----~~f~l~r~~~ 41 (47)
T PF05688_consen 6 AAKAKVGETIPLTVTVKDANGNPVPN-----APFTLTRGDA 41 (47)
T ss_pred hhheecCCeEEEEEEEECCCCCCcCC-----ceEEEEecCc
Confidence 34578899999999999888877653 6777777643
No 21
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=58.96 E-value=22 Score=18.23 Aligned_cols=38 Identities=21% Similarity=0.489 Sum_probs=27.8
Q ss_pred CCCCCEEEEEEEEEeCCCCEEeccCC-CCccEEEEeCCC
Q psy16059 17 PKPGQVVVVHYTGTLTDGTKFDSSRD-RGVPFKFRLGKG 54 (67)
Q Consensus 17 ~~~gd~V~v~y~~~~~dg~~~~~s~~-~~~p~~~~lG~~ 54 (67)
|-..+.+.+.=.+...+|.++.++++ .++.+.+.+|.+
T Consensus 13 ~Ya~e~~~l~~~GV~~ngrlV~T~F~fDG~~l~~~~G~~ 51 (79)
T PF11012_consen 13 PYAAEEFTLNESGVFRNGRLVATSFEFDGKTLEYRTGSG 51 (79)
T ss_pred CccccEEEECCCcEEECCCEEeeEEEECCCEEEEEECCe
Confidence 56678888888888778888887665 245677777754
No 22
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.62 E-value=47 Score=18.47 Aligned_cols=44 Identities=27% Similarity=0.498 Sum_probs=24.9
Q ss_pred CCCCCCEEEEEEEEEeCC-CCEEeccCCCCccEEEEeCCCCccHHHHHhh
Q psy16059 16 YPKPGQVVVVHYTGTLTD-GTKFDSSRDRGVPFKFRLGKGDVIKGWDHGI 64 (67)
Q Consensus 16 ~~~~gd~V~v~y~~~~~d-g~~~~~s~~~~~p~~~~lG~~~~~~g~e~~l 64 (67)
.+..||.|.+||--.... |+.--. -.-.|.+-++.+.+=|+-+.
T Consensus 70 ~iadGdLV~vh~hqt~~~pg~~~~v-----~~DtfR~ddgkivEHWDviq 114 (129)
T COG4922 70 VIADGDLVTVHYHQTVSEPGSYTTV-----TFDTFRIDDGKIVEHWDVIQ 114 (129)
T ss_pred EeccCCEEEEEEeeeeCCCCcceeE-----EEEEEEeeCCceeeccchhh
Confidence 367899999999877632 321110 12234455556555565544
No 23
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.45 E-value=17 Score=22.00 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=20.1
Q ss_pred CeEEEEEecCCCccCCCCCCEEEEEEEEE
Q psy16059 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGT 30 (67)
Q Consensus 2 Gv~~~~~~~g~g~~~~~~gd~V~v~y~~~ 30 (67)
|.++++|++|. +..||.+.+-+...
T Consensus 140 G~y~RVL~~G~----v~~gD~l~l~~r~~ 164 (210)
T COG2258 140 GWYARVLEEGK----VRAGDPLKLIPRPS 164 (210)
T ss_pred cEEEEEcccce----ecCCCceEEecCCC
Confidence 68999997764 67799999888765
No 24
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=41.77 E-value=87 Score=19.57 Aligned_cols=43 Identities=19% Similarity=0.340 Sum_probs=30.1
Q ss_pred cCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCC------CccHHHHHhh
Q psy16059 15 TYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKG------DVIKGWDHGI 64 (67)
Q Consensus 15 ~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~------~~~~g~e~~l 64 (67)
...+.||.|.|+..... ||..-|+ ...|.+|.. .|+..-+++|
T Consensus 85 ~vlk~GDiv~IDvg~~~-dG~~~Ds------a~T~~vg~~~~~~~~~L~~~t~eal 133 (255)
T COG0024 85 KVLKEGDIVKIDVGAHI-DGYIGDT------AITFVVGEVSDEDAKRLLEATKEAL 133 (255)
T ss_pred cccCCCCEEEEEEEEEE-CCeeeeE------EEEEECCCCChHHHHHHHHHHHHHH
Confidence 34788999999999887 8888775 467777731 1555555544
No 25
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=38.48 E-value=1e+02 Score=19.33 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=23.0
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCC
Q psy16059 16 YPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGK 53 (67)
Q Consensus 16 ~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~ 53 (67)
..+.||.|.++.-+.. ||...|. ..++.+|.
T Consensus 74 ~l~~GDvV~iD~G~~~-dGY~aD~------arT~~vG~ 104 (295)
T TIGR00501 74 VFKDGDVVKLDLGAHV-DGYIADT------AITVDLGD 104 (295)
T ss_pred cCCCCCEEEEEEeEEE-CCEEEEE------EEEEEeCc
Confidence 4789999999987775 8876664 35566664
No 26
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=37.83 E-value=36 Score=21.75 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=14.2
Q ss_pred CeEEEEEecCCCccCCCCCCEEEE
Q psy16059 2 GVDVETLSPGDGQTYPKPGQVVVV 25 (67)
Q Consensus 2 Gv~~~~~~~g~g~~~~~~gd~V~v 25 (67)
|++++++++|. ++.||.|.+
T Consensus 286 G~y~RVl~~G~----Ir~GD~V~l 305 (308)
T PRK14499 286 GLFAKVLKGGK----IKPGDIIEI 305 (308)
T ss_pred eEEEEEecCeE----EcCCCEEEE
Confidence 77888887664 566777765
No 27
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=34.52 E-value=1e+02 Score=21.00 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=20.1
Q ss_pred CCCCCCEEEEEEEEEeCCCCEEecc
Q psy16059 16 YPKPGQVVVVHYTGTLTDGTKFDSS 40 (67)
Q Consensus 16 ~~~~gd~V~v~y~~~~~dg~~~~~s 40 (67)
..+.||.|.|++-+.+ ||...|.+
T Consensus 233 vLk~GDvVkID~G~~v-dGYiaD~A 256 (470)
T PTZ00053 233 VLTYDDVCKLDFGTHV-NGRIIDCA 256 (470)
T ss_pred EecCCCeEEEEEeEEE-CCEEEeEE
Confidence 4788999999999886 89888853
No 28
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=33.00 E-value=1.1e+02 Score=18.14 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=22.9
Q ss_pred cCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCC
Q psy16059 15 TYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGK 53 (67)
Q Consensus 15 ~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~ 53 (67)
..++.||.|.+++-+.+ +|..-|- ..+|.+|.
T Consensus 81 ~~l~~Gd~v~iD~g~~~-~GY~sD~------tRT~~vG~ 112 (228)
T cd01089 81 YTLKDGDVVKIDLGCHI-DGYIAVV------AHTIVVGA 112 (228)
T ss_pred cccCCCCEEEEEEEEEE-CCEEEEE------EEEEEeCC
Confidence 34788999999998776 7776553 45566663
No 29
>CHL00075 rpl21 ribosomal protein L21
Probab=30.99 E-value=67 Score=17.38 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=14.7
Q ss_pred EEEEEecCCCccCCCCCCEEEEEE
Q psy16059 4 DVETLSPGDGQTYPKPGQVVVVHY 27 (67)
Q Consensus 4 ~~~~~~~g~g~~~~~~gd~V~v~y 27 (67)
.|.+++.|.-.-.++.||.+.++.
T Consensus 3 myAIi~~gGkQykV~~Gd~i~vek 26 (108)
T CHL00075 3 TYAIIEAGGKQLWVEPGRFYDINH 26 (108)
T ss_pred EEEEEEECCEEEEEeCCCEEEEEE
Confidence 466666665544566666666664
No 30
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain
Probab=27.15 E-value=96 Score=15.79 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=12.0
Q ss_pred cEEEEeCCCCccHHHHH
Q psy16059 46 PFKFRLGKGDVIKGWDH 62 (67)
Q Consensus 46 p~~~~lG~~~~~~g~e~ 62 (67)
-+.|.|.++..+-||+.
T Consensus 47 ~f~fPL~e~~~V~gfea 63 (78)
T PF13757_consen 47 VFVFPLDEGATVVGFEA 63 (78)
T ss_pred EEEEecCCCcEEEEEEE
Confidence 47778888777766654
No 31
>PF14743 DNA_ligase_OB_2: DNA ligase OB-like domain; PDB: 2Q2U_D 2Q2T_A 1FVI_A 1P8L_A.
Probab=26.62 E-value=53 Score=15.99 Aligned_cols=19 Identities=37% Similarity=0.805 Sum_probs=13.3
Q ss_pred CCCCCEEEEEEEEEeCCCC
Q psy16059 17 PKPGQVVVVHYTGTLTDGT 35 (67)
Q Consensus 17 ~~~gd~V~v~y~~~~~dg~ 35 (67)
+..|..|++.|.....+|.
T Consensus 38 ~~iG~iit~ky~~~t~~g~ 56 (66)
T PF14743_consen 38 PYIGKIITVKYQGLTKDGS 56 (66)
T ss_dssp HHTT-EEEEEEE-TTSSSS
T ss_pred CCCCCEEEEEEEccCCCCc
Confidence 4578999999998876664
No 32
>PF03562 MltA: MltA specific insert domain; InterPro: IPR005300 This group of proteins includes MltA; a membrane-bound, murein degrading transglycosylase enzyme which plays an important role in the controlled growth of the stress-bearing sacculus of Escherichia coli [, ].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 2PI8_D 2AE0_X 2PIC_A 2GAE_A 2PJJ_A 3CZB_A 2G6G_A 2PNW_A 2G5D_A.
Probab=26.53 E-value=69 Score=18.52 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=16.8
Q ss_pred cCCCccCCCCCCEEEEEEEEEeCCCCEEec
Q psy16059 10 PGDGQTYPKPGQVVVVHYTGTLTDGTKFDS 39 (67)
Q Consensus 10 ~g~g~~~~~~gd~V~v~y~~~~~dg~~~~~ 39 (67)
.|+|-.....|+.+.+.|.+. ||..+.+
T Consensus 85 QGSGrl~l~DG~~~rvgYAg~--NG~pY~s 112 (158)
T PF03562_consen 85 QGSGRLRLPDGSTVRVGYAGQ--NGHPYTS 112 (158)
T ss_dssp HSEEEEE-TTSSEEEEEEEEE---SS----
T ss_pred cCcEEEEcCCCCEEEEEEccc--CCCcccc
Confidence 366665567889999999888 4665544
No 33
>TIGR02178 yeiP elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.
Probab=25.91 E-value=1.5e+02 Score=17.58 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=17.1
Q ss_pred CCCEEEEEEEEEeC-CCCEEeccCCC
Q psy16059 19 PGQVVVVHYTGTLT-DGTKFDSSRDR 43 (67)
Q Consensus 19 ~gd~V~v~y~~~~~-dg~~~~~s~~~ 43 (67)
.|..+.+..+.+.. +|+.++.++..
T Consensus 31 ~ga~~~vk~klknl~tG~~~e~tf~s 56 (186)
T TIGR02178 31 RGGNVRYKFRMYDVPTGSKVEERFKA 56 (186)
T ss_pred CCCcEEEEEEEeEcCCCCeEEEEECC
Confidence 35555666666665 88888887754
No 34
>PRK12426 elongation factor P; Provisional
Probab=25.75 E-value=1.5e+02 Score=17.56 Aligned_cols=20 Identities=0% Similarity=-0.026 Sum_probs=13.0
Q ss_pred EEEEEEEeC-CCCEEeccCCC
Q psy16059 24 VVHYTGTLT-DGTKFDSSRDR 43 (67)
Q Consensus 24 ~v~y~~~~~-dg~~~~~s~~~ 43 (67)
.++.+.+.. +|+.++.++..
T Consensus 36 ~vr~klknl~tG~~~e~tf~s 56 (185)
T PRK12426 36 FIKVSLQAADSDVVVERNFKA 56 (185)
T ss_pred EEEEEEEEcCCCCeEEEEECC
Confidence 444455554 88888888754
No 35
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=25.66 E-value=1.1e+02 Score=17.42 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.9
Q ss_pred CEEEEEEEEEeCCCCEEeccCC
Q psy16059 21 QVVVVHYTGTLTDGTKFDSSRD 42 (67)
Q Consensus 21 d~V~v~y~~~~~dg~~~~~s~~ 42 (67)
-.+.++|+.+..+|+++.+...
T Consensus 86 PRI~l~Y~L~d~~G~vi~~g~e 107 (141)
T PF11454_consen 86 PRIELSYTLTDADGKVIKQGEE 107 (141)
T ss_pred CcEEEEEEEECCCCcEEEecce
Confidence 3689999999889999988543
No 36
>TIGR03773 anch_rpt_wall putative ABC transporter-associated repeat protein. Members of this protein family occur in genomes that contain a three-gene ABC transporter operon associated with the presence of domain TIGR03769. That domain occurs as a single-copy insert in the substrate-binding protein, and occurs in two or more copies in members of this protein family. Members of this family typically are encoded adjacent to the said transporter operon and may serve as a substrate receptor.
Probab=25.56 E-value=2.2e+02 Score=19.77 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=22.7
Q ss_pred CEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCC
Q psy16059 21 QVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKG 54 (67)
Q Consensus 21 d~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~ 54 (67)
-.+.+.+++.+.+|+.+. ....+.|.+|.+
T Consensus 413 Y~l~~~~sa~~~~G~~vS----~~~tltfaVG~~ 442 (513)
T TIGR03773 413 YKLQVTQSATTTNGKKAS----DTTTLTFAVGDN 442 (513)
T ss_pred EEEEEEEEEEeCCCceec----ccEEEEEEeCCC
Confidence 478888888888888862 226899999864
No 37
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=25.04 E-value=1.6e+02 Score=17.53 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=22.2
Q ss_pred cCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeC
Q psy16059 15 TYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLG 52 (67)
Q Consensus 15 ~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG 52 (67)
..+++||.|.+++.+.+ +|...|. ..+|.+|
T Consensus 75 r~l~~GD~v~~d~g~~~-~GY~ad~------~RT~~vG 105 (228)
T cd01090 75 RKVQRGDILSLNCFPMI-AGYYTAL------ERTLFLD 105 (228)
T ss_pred cccCCCCEEEEEEeEEE-CCEeeee------EEEEECC
Confidence 45789999999988775 7765553 3555666
No 38
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=22.52 E-value=1.8e+02 Score=17.28 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=24.0
Q ss_pred CCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCCC
Q psy16059 17 PKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKG 54 (67)
Q Consensus 17 ~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~~ 54 (67)
...|+.+.+...+...+|+... ..+.+.++++
T Consensus 72 ~~~g~~lrl~V~G~~~~G~~~~------k~v~lpl~~~ 103 (183)
T PF11874_consen 72 LPPGSSLRLRVEGPDFEGDPVT------KTVLLPLGDG 103 (183)
T ss_pred CCCCCEEEEEEEccCCCCCceE------EEEEEEcCCC
Confidence 5679999999999888888765 3455666544
No 39
>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....
Probab=22.19 E-value=78 Score=16.58 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=13.4
Q ss_pred EEEEecCCCccCCCCCCEEEEE
Q psy16059 5 VETLSPGDGQTYPKPGQVVVVH 26 (67)
Q Consensus 5 ~~~~~~g~g~~~~~~gd~V~v~ 26 (67)
|.+++.|.-.-.++.||.+.++
T Consensus 2 yAIi~~ggkQykV~~gd~i~v~ 23 (96)
T PF00829_consen 2 YAIIEIGGKQYKVEEGDVIDVE 23 (96)
T ss_dssp EEEEESSSEEEEESSSEEEEEE
T ss_pred EEEEEECCEEEEEeCCCEEEEC
Confidence 5566655544456667776665
No 40
>KOG1546|consensus
Probab=21.34 E-value=78 Score=20.82 Aligned_cols=14 Identities=43% Similarity=1.018 Sum_probs=12.1
Q ss_pred CCCCCEEEEEEEEE
Q psy16059 17 PKPGQVVVVHYTGT 30 (67)
Q Consensus 17 ~~~gd~V~v~y~~~ 30 (67)
++.||...+||++-
T Consensus 135 aq~gD~LvfHYSGH 148 (362)
T KOG1546|consen 135 AQPGDSLVFHYSGH 148 (362)
T ss_pred CCCCCEEEEEecCC
Confidence 57899999999983
No 41
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=21.31 E-value=1.4e+02 Score=16.29 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=17.3
Q ss_pred EEecCCCccCCCCCCEEEEEEEEEe
Q psy16059 7 TLSPGDGQTYPKPGQVVVVHYTGTL 31 (67)
Q Consensus 7 ~~~~g~g~~~~~~gd~V~v~y~~~~ 31 (67)
+++...|.. .+.||+|++-=....
T Consensus 42 ~~kDsnG~~-L~dGDsV~liKDLkV 65 (109)
T TIGR00686 42 IVKDCNGNL-LANGDSVILIKDLKV 65 (109)
T ss_pred eEEcCCCCC-ccCCCEEEEEeeccc
Confidence 345666775 789999998776654
No 42
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=20.97 E-value=2.6e+02 Score=18.45 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=24.5
Q ss_pred cCCCCCCEEEEEEEEEeCCCCEEeccCCCCccEEEEeCC
Q psy16059 15 TYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGK 53 (67)
Q Consensus 15 ~~~~~gd~V~v~y~~~~~dg~~~~~s~~~~~p~~~~lG~ 53 (67)
...+.||.|.|++-+.+ ||..-+. ..+|.+|.
T Consensus 99 ~~Lk~GDvVkIDlG~~i-dGY~aD~------arTv~vG~ 130 (389)
T TIGR00495 99 YILKEGDVVKIDLGCHI-DGFIALV------AHTFVVGV 130 (389)
T ss_pred cCcCCCCEEEEEEEEEE-CCEEEEE------EEEEEECC
Confidence 35789999999998886 8887774 45666763
Done!