RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16059
(67 letters)
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 205
Score = 82.8 bits (205), Expect = 9e-22
Identities = 36/65 (55%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ + L GDG PK G V VHYTGTL DGT FDSS DRG P +F LG VI GWD
Sbjct: 102 GLQYKVLKAGDGAA-PKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLGG--VIPGWD 158
Query: 62 HGIAQ 66
G+
Sbjct: 159 EGLQG 163
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase.
Length = 94
Score = 77.3 bits (191), Expect = 8e-21
Identities = 32/53 (60%), Positives = 35/53 (66%)
Query: 13 GQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G K G V VHYTG L DGT FDSS+DRG PF+F LG G VI GWD G+
Sbjct: 1 GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLL 53
>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 269
Score = 58.6 bits (142), Expect = 3e-12
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 10 PGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGI 64
G G+ PK VVV+Y GTL DG +FD+S RG P FRL VI GW G+
Sbjct: 155 EGTGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWTEGL 206
>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 206
Score = 47.9 bits (114), Expect = 2e-08
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGW 60
G+ L+ G+G P V VHYTG L DGT FDSS RG P +F + VI GW
Sbjct: 103 GLQFRVLTQGEGAI-PARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPV--NGVIPGW 158
>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2
[Posttranslational modification, protein turnover,
chaperones].
Length = 174
Score = 43.8 bits (104), Expect = 4e-07
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 18 KPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKG 59
+ G VV +HYT + DG D++ + P F +G G +I G
Sbjct: 4 EKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPG 45
>gnl|CDD|237908 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans
isomerase; Provisional.
Length = 156
Score = 38.9 bits (91), Expect = 2e-05
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 23 VVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKG 54
V+VH+T L DG+ +S+R+ G P FRLG G
Sbjct: 11 VLVHFTLKLDDGSTAESTRNNGKPALFRLGDG 42
>gnl|CDD|219794 pfam08323, Glyco_transf_5, Starch synthase catalytic domain.
Length = 234
Score = 26.5 bits (59), Expect = 0.80
Identities = 10/47 (21%), Positives = 14/47 (29%)
Query: 1 MGVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPF 47
+G DV + P G + Q+ V L GV
Sbjct: 31 LGHDVRVIMPRYGFIPEERKQLEEVIELYVLFGYVGVARLELDGVDV 77
>gnl|CDD|233852 TIGR02404, trehalos_R_Bsub, trehalose operon repressor, B.
subtilis-type. This family consists of repressors of
the GntR family typically associated with trehalose
utilization operons. Trehalose is imported as
trehalose-6-phosphate and then hydrolyzed by
alpha,alpha-phosphotrehalase to glucose and glucose-6-P.
This family includes repressors mostly from
Gram-positive lineages and does not include the TreR
from E. coli [Regulatory functions, DNA interactions].
Length = 233
Score = 25.8 bits (57), Expect = 1.4
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 12 DGQTYPKPGQVVVVHYTGTLTDGTKFD--SSRDRGVPFKFR 50
DG + VVVV L D +F SR R FKF
Sbjct: 193 DGDDH-----VVVVKSKTFLEDTRQFQYTESRHRLDKFKFV 228
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 25.6 bits (56), Expect = 1.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 43 RGVPFKFRLGKGDVIKGWDH 62
+GV F FR K D IKGW
Sbjct: 97 KGVEFLFRKNKVDWIKGWGR 116
>gnl|CDD|226053 COG3522, COG3522, Predicted component of the type VI protein
secretion system [Intracellular trafficking, secretion,
and vesicular transport].
Length = 446
Score = 25.4 bits (56), Expect = 2.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 20 GQVVVVHYTGTLTDGTKFD 38
G++ + +G L DGT F
Sbjct: 58 GKLAITSASGVLPDGTPFS 76
>gnl|CDD|218816 pfam05936, DUF876, Bacterial protein of unknown function
(DUF876). This family consists of a series of
hypothetical bacterial sequences of unknown function.
Length = 427
Score = 25.2 bits (56), Expect = 2.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 20 GQVVVVHYTGTLTDGTKFDSSRDRGVP 46
G++ + +G DGT FD D +P
Sbjct: 40 GKLALTSASGIFPDGTPFDIPGDDPLP 66
>gnl|CDD|132396 TIGR03353, VI_chp_4, type VI secretion protein, VC_A0114 family.
Work by Mougous, et al. (2006), describes IAHP-related
loci as a type VI secretion system (PMID:16763151).
This protein family is associated with type VI
secretion loci, although not treated explicitly by
Mougous, et al [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 439
Score = 24.9 bits (55), Expect = 3.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 20 GQVVVVHYTGTLTDGTKFD 38
G++ + +G DGT FD
Sbjct: 53 GKIALTSASGIFPDGTPFD 71
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 24.7 bits (54), Expect = 4.0
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 6 ETLSPGDGQTY----PKPGQVVVVHYTGTLT 32
+ L+ G GQ P+ V V+ YTG T
Sbjct: 189 DALAKGAGQPVTEANPQADDVAVLQYTGGTT 219
>gnl|CDD|223519 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 500
Score = 24.5 bits (54), Expect = 4.7
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 34 GTKFDSSRDRGVPFKFRLGKGDVIKG 59
G K + V F LG
Sbjct: 333 GFKLNIWEGIEVGHIFELGTKYSEAM 358
>gnl|CDD|237234 PRK12854, PRK12854, glucose-6-phosphate 1-dehydrogenase;
Provisional.
Length = 484
Score = 24.2 bits (53), Expect = 5.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 38 DSSRDRGVPFKFRLGK 53
D+ R GVPF R GK
Sbjct: 316 DNWRWAGVPFYLRTGK 331
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.141 0.436
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,487,415
Number of extensions: 253075
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 17
Length of query: 67
Length of database: 10,937,602
Length adjustment: 38
Effective length of query: 29
Effective length of database: 9,252,150
Effective search space: 268312350
Effective search space used: 268312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.2 bits)