RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16059
(67 letters)
>2ppn_A FK506-binding protein 1A; high resolution protein structure,
isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB:
1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A*
1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A*
1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Length = 107
Score = 114 bits (289), Expect = 9e-36
Identities = 46/65 (70%), Positives = 53/65 (81%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV VET+SPGDG+T+PK GQ VVHYTG L DG KFDSSRDR PFKF LGK +VI+GW+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 62 HGIAQ 66
G+AQ
Sbjct: 61 EGVAQ 65
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid,
structura genomics, seattle structural genomics center
for infectious; NMR {Giardia lamblia}
Length = 130
Score = 115 bits (289), Expect = 2e-35
Identities = 36/65 (55%), Positives = 46/65 (70%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
++ + L+PGDG T P+ G+ V VHY G DG +FDSSR RG PF+F LG G+VIKGWD
Sbjct: 25 QLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWD 84
Query: 62 HGIAQ 66
G+A
Sbjct: 85 QGVAT 89
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae}
SCOP: d.26.1.1
Length = 113
Score = 114 bits (287), Expect = 2e-35
Identities = 38/65 (58%), Positives = 48/65 (73%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
V ++ +SPGDG T+PK G +V +HYTGTL +G KFDSS DRG PF+ +G G VIKGWD
Sbjct: 7 NVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWD 66
Query: 62 HGIAQ 66
GI +
Sbjct: 67 VGIPK 71
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
1.60A {Homo sapiens} PDB: 3o5f_A
Length = 144
Score = 114 bits (288), Expect = 4e-35
Identities = 34/65 (52%), Positives = 39/65 (60%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV G+G+ P G V VHY G L++G KFDSS DR PF F LGKG VIK WD
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWD 95
Query: 62 HGIAQ 66
G+A
Sbjct: 96 IGVAT 100
>1r9h_A FKB-6, FK506 binding protein family; structural genomics,
peptidylprolyl isomerase, PSI, protein structure
initiative; 1.80A {Caenorhabditis elegans} SCOP:
d.26.1.1
Length = 135
Score = 113 bits (285), Expect = 9e-35
Identities = 37/65 (56%), Positives = 41/65 (63%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV G G P G V VHY GTL +GTKFDSSRDRG F F LG+G+VIKGWD
Sbjct: 15 GVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWD 74
Query: 62 HGIAQ 66
G+A
Sbjct: 75 LGVAT 79
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A
3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Length = 128
Score = 113 bits (284), Expect = 1e-34
Identities = 34/65 (52%), Positives = 39/65 (60%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV G+G+ P G V VHY G L++G KFDSS DR PF F LGKG VIK WD
Sbjct: 20 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWD 79
Query: 62 HGIAQ 66
G+A
Sbjct: 80 IGVAT 84
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET:
SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A
2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Length = 133
Score = 105 bits (263), Expect = 2e-31
Identities = 37/65 (56%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ E L+ G G + GQ V VHYTG LTDG KFDSS+DR PF F LG G VIKGWD
Sbjct: 29 GLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWD 87
Query: 62 HGIAQ 66
G+
Sbjct: 88 EGVQG 92
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 108 bits (272), Expect = 3e-31
Identities = 36/65 (55%), Positives = 37/65 (56%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV G G P G V VHYTG L DGTKFDSS DR F F LGKG+VIK WD
Sbjct: 52 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWD 111
Query: 62 HGIAQ 66
IA
Sbjct: 112 IAIAT 116
Score = 56.8 bits (137), Expect = 8e-12
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 6 ETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIK---GWDH 62
+ G+G P G +V V G D FD +F +G+G+ + G +
Sbjct: 173 RIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-----ELRFEIGEGENLDLPYGLER 226
Query: 63 GIAQ 66
I +
Sbjct: 227 AIQR 230
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase,
nucleus, phosphoprotein, R isomerase-inhibitor complex;
HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A*
Length = 119
Score = 103 bits (260), Expect = 3e-31
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 1 MGVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSS-------RDRGVPFKFRLGK 53
L GD +PK G VV YTGTL DGT FD++ + P F++G
Sbjct: 4 PKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGV 63
Query: 54 GDVIKGWDHGIAQ 66
G VI+GWD +
Sbjct: 64 GKVIRGWDEALLT 76
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain
five-stranded anti-parallel beta-sheet alpha-helix
crossing THis sheet; 2.08A {Triticum aestivum} PDB:
3jym_A
Length = 356
Score = 109 bits (273), Expect = 6e-31
Identities = 38/65 (58%), Positives = 44/65 (67%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ + L G+G P+ G V VHYTGTL DG KFDSSRDR FKF+LG+G VIKGWD
Sbjct: 12 GLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWD 71
Query: 62 HGIAQ 66
GI
Sbjct: 72 QGIKT 76
Score = 84.1 bits (208), Expect = 2e-21
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 5 VETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKF-DSSRDRGVPFKFRLGKGDVIKGWDHG 63
+ L +G P G VV V TG L DGT F D PF+F+ + VI+G D
Sbjct: 248 KKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRA 307
Query: 64 IAQ 66
+
Sbjct: 308 VLN 310
Score = 72.5 bits (178), Expect = 2e-17
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 1 MGVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGW 60
G+ + L GD PK V V Y L DGT S +F + G +
Sbjct: 127 GGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSE----GVEFTVKDGHLCPAL 182
Query: 61 DHGIAQ 66
+
Sbjct: 183 AKAVKT 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP:
a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 109 bits (273), Expect = 2e-30
Identities = 34/65 (52%), Positives = 39/65 (60%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV G+G+ P G V VHY G L++G KFDSS DR PF F LGKG VIK WD
Sbjct: 32 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWD 91
Query: 62 HGIAQ 66
G+A
Sbjct: 92 IGVAT 96
Score = 60.1 bits (145), Expect = 7e-13
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 1 MGVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKG---DVI 57
G+ T G+G + P G V +H G G FD F +G+G D+
Sbjct: 146 GGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMFDCR-----DVAFTVGEGEDHDIP 199
Query: 58 KGWDHGIAQ 66
G D + +
Sbjct: 200 IGIDKALEK 208
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 104 bits (261), Expect = 2e-30
Identities = 37/65 (56%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ E L+ G G + GQ V VHYTG LTDG KFDSS+DR PF F LG G VIKGWD
Sbjct: 105 GLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWD 163
Query: 62 HGIAQ 66
G+
Sbjct: 164 EGVQG 168
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET:
FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A
3ihz_A* 3ni6_A 3pa7_A
Length = 129
Score = 101 bits (253), Expect = 5e-30
Identities = 34/68 (50%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 2 GVDVETLSPGDG--QTYPKPGQVVVVHYTGTL-TDGTKFDSSRDRGVPFKFRLGKGDVIK 58
GV L GD + PK G V VHY G L + G FDSS DR VPFKF L +G+VIK
Sbjct: 17 GVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIK 76
Query: 59 GWDHGIAQ 66
GWD ++
Sbjct: 77 GWDICVSS 84
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506
binding protein; 1.85A {Arabidopsis thaliana} SCOP:
d.26.1.1 PDB: 1y0o_A
Length = 129
Score = 100 bits (251), Expect = 9e-30
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ G G GQ++ HY G L +G FDSS +RG P FR+G G+VIKGWD
Sbjct: 13 GLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 71
Query: 62 HGIA 65
GI
Sbjct: 72 QGIL 75
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat,
williams-beuren syndrome, structural genomics
consortium, SGC; 2.10A {Homo sapiens}
Length = 134
Score = 100 bits (251), Expect = 1e-29
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTD-GTKFDSSRDRGVPFKFRLGKGDVIKGW 60
GV + + G G P V+V Y+G L FDS+ R P +LG+ + G
Sbjct: 27 GVLKDVIREGAGDL-VAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGM 85
Query: 61 DHGIAQ 66
+ G+
Sbjct: 86 ELGLLS 91
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 98.4 bits (246), Expect = 3e-29
Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIAQ 66
G + G V+ +HYTG L DGT+FDSS + PF F LG G VIKGWD G+
Sbjct: 1 GSPIK-SRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLG 55
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A
{Arabidopsis thaliana}
Length = 180
Score = 97.6 bits (243), Expect = 6e-28
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGT-KFDSSRDRGVPFKFRLGK-GDVIKG 59
V + + G G P +HY + KF+ + P + LGK + G
Sbjct: 50 KVSKQIIKEGHGSK-PSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAG 108
Query: 60 WDHGIAQ 66
G+A
Sbjct: 109 LAIGVAS 115
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2
inhibitor, SHH signalling antagonist, structural
genomics consortium, SGC; 1.60A {Homo sapiens} PDB:
2f2d_A 3ey6_A
Length = 118
Score = 91.5 bits (228), Expect = 2e-26
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 2 GVDVETLSPGDG-QTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGW 60
+ +TL PG + P GQVV VH +L +GT+ F LG DVI+
Sbjct: 14 LLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVFTLGDCDVIQAL 69
Query: 61 DHGIAQ 66
D +
Sbjct: 70 DLSVPL 75
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel,
central helix, with flexible N-terminal extension,
isomerase; NMR {Homo sapiens}
Length = 157
Score = 91.0 bits (226), Expect = 1e-25
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 2 GVDVETLSPG-DGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGW 60
+ +TL PG G + P GQVV VH +L +GT+ F LG DVI+
Sbjct: 44 LLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVFTLGDCDVIQAL 99
Query: 61 DHGIAQ 66
D +
Sbjct: 100 DLSVPL 105
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 135
Score = 89.3 bits (222), Expect = 3e-25
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 2 GVDVETLSPG-DGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGW 60
+ +TL PG G + P GQVV VH +L +GT+ F LG DVI+
Sbjct: 18 LLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVFTLGDCDVIQAL 73
Query: 61 DHGIAQ 66
D +
Sbjct: 74 DLSVPL 79
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics,
structural genomics consortium, SGC, PE prolyl
CIS-trans isomerase; 1.82A {Homo sapiens}
Length = 125
Score = 88.5 bits (220), Expect = 4e-25
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 2 GVDVETLS-PGDGQTYPKPGQVVVVHYTGTL-TDGTKFDSS--RDRGVPFKFRLGKGDVI 57
V +E L P K G +++VHY G L DG+ F S+ + G P F LG + +
Sbjct: 13 EVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEAL 72
Query: 58 KGWDHGIAQ 66
KGWD G+
Sbjct: 73 KGWDQGLKG 81
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY
rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP:
d.26.1.1
Length = 167
Score = 88.6 bits (220), Expect = 1e-24
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ + ++ G G+ P VHYTG L DGT FDSSR+RG P FR + VIKGW
Sbjct: 38 GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNE--VIKGWT 95
Query: 62 HGIA 65
+
Sbjct: 96 EALQ 99
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 78.3 bits (193), Expect = 5e-20
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ + + G G+ PK VVV+Y GTL DG +FD+S RG P FRL VI GW
Sbjct: 122 GLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWT 178
Query: 62 HGIAQ 66
G+
Sbjct: 179 EGLKN 183
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 77.8 bits (192), Expect = 6e-20
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ + ++ G+G P V V YTG L DGT FDS+ G P F++ + VI GW
Sbjct: 107 GLQYKVINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWT 163
Query: 62 HGIAQ 66
+
Sbjct: 164 EALQL 168
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 79.3 bits (195), Expect = 6e-20
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGT-KFDSSRDRGVPFKFRLGK-GDVIKG 59
V + + G G P +HY + KF+ + P + LGK + G
Sbjct: 50 KVSKQIIKEGHGSK-PSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAG 108
Query: 60 WDHGIAQ 66
G+A
Sbjct: 109 LAIGVAS 115
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 70.1 bits (172), Expect = 4e-17
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ + L+PG G P V V Y G L DG FD S P FRL VI GW
Sbjct: 118 GILMTELTPGTGPK-PDANGRVEVRYVGRLPDGKIFDQSTQ---PQWFRLDS--VISGWT 171
Query: 62 HGIAQ 66
+
Sbjct: 172 SALQN 176
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain,
IF domain, chaperone, peptidyl-prolyl isomerase
isomerase; 1.35A {Escherichia coli}
Length = 169
Score = 55.8 bits (135), Expect = 7e-12
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 18 KPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGI 64
+ V+VH+T L DGT +S+R+ G P FRLG + +G + +
Sbjct: 26 QSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHL 72
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 56.8 bits (137), Expect = 9e-12
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 7 TLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKG---DVIKGWDHG 63
+ G+G P G +V V G D FD +F +G+G D+ G +
Sbjct: 31 IQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-----ELRFEIGEGENLDLPYGLERA 84
Query: 64 IA 65
I
Sbjct: 85 IQ 86
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 48.8 bits (117), Expect = 4e-09
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 18 KPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKG 59
VV + Y DG D S P + G G +I G
Sbjct: 4 AKDLVVSLAYQVRTEDGVLVDESPVSA-PLDYLHGHGSLISG 44
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein,
rotamase; NMR {Helicobacter pylori}
Length = 151
Score = 47.2 bits (113), Expect = 1e-08
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 20 GQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKG 59
Q ++ Y + S P +F +G +I G
Sbjct: 10 KQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAG 49
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 47.4 bits (113), Expect = 1e-08
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 18 KPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKG 59
VV + Y DG D S P + G G +I G
Sbjct: 4 AKDLVVSLAYQVRTEDGVLVDESPVSA-PLDYLHGHGSLISG 44
>1ix5_A FKBP; ppiase, isomerase; NMR
{Methanothermococcusthermolithotrophicus} SCOP:
d.26.1.1
Length = 151
Score = 45.8 bits (109), Expect = 3e-08
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 18 KPGQVVVVHYTGTLTDGTKFDSSRDR-------------GVPFKFRLGKGDVIKGWDHGI 64
G + V Y G L G FD+S + P +F +G+G +I+G++ +
Sbjct: 3 DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A
{Methanocaldococcus jannaschii} PDB: 3prd_A
Length = 231
Score = 40.6 bits (95), Expect = 5e-06
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 14/55 (25%)
Query: 18 KPGQVVVVHYTGTLTDGTKFDSSRDRGV-------------PFKFRLGKGDVIKG 59
+ G++V + Y G + DG FD++ + P G+G V+ G
Sbjct: 3 EKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPG 56
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein,
chaperone; 1.95A {Methanocaldococcus jannaschii} PDB:
3pra_A
Length = 157
Score = 39.6 bits (93), Expect = 8e-06
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 14/60 (23%)
Query: 18 KPGQVVVVHYTGTLTDGTKFDSSRDRGV-------------PFKFRLGKGDVIKGWDHGI 64
+ G++V + Y G + DG FD++ + P G+G V+ G D I
Sbjct: 3 EKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function,
two domain P rotamase; 2.41A {Thermus thermophilus}
PDB: 3cgn_A 3luo_A*
Length = 158
Score = 39.2 bits (92), Expect = 1e-05
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 18 KPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKG 59
+VV + YT + +G D + G ++I G
Sbjct: 4 GQDKVVTIRYTLQV-EGEVLDQG-----ELSYLHGHRNLIPG 39
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Length = 530
Score = 25.3 bits (55), Expect = 1.5
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 22 VVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIK 58
V V H+ + G+PF R+ +G+ +
Sbjct: 436 VTVAHFHK--------EVFGTFGIPFLLRIHQGEHFR 464
>2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like
protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus
kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A
Length = 413
Score = 25.4 bits (55), Expect = 1.7
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 37 FDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
S GV LGK + G D +
Sbjct: 271 VTPSEFYGVAPSLWLGKLLRLAGADFVLF 299
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 25.1 bits (55), Expect = 2.1
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 6 ETLSPGDGQTYPKPGQVVVVHYTGTLT-DGTKFDSSRDRGV 45
+ + P + LT +G KF +SR+ +
Sbjct: 316 KYKDEEVEAEWNLPYDIPA---NEYLTLEGKKFSTSRNWAI 353
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine;
2.2A {Bacillus anthracis}
Length = 312
Score = 24.1 bits (53), Expect = 3.9
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 4/26 (15%)
Query: 3 VDVETLSPGDGQTY----PKPGQVVV 24
V T P G+T +P VV
Sbjct: 267 SIVHTYGPSQGRTVETDDGRPVHVVY 292
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 24.1 bits (53), Expect = 4.6
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 13 GQTYPKPGQVVVVHYTGTLT-DGTKFDSSRDRGV 45
G + KP + V G +T +G K SR +
Sbjct: 324 GSNFRKPSNLFV---HGYVTVNGAKMSKSRGTFI 354
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide
synthase, transferase; 2.00A {Huperzia serrata} PDB:
3awj_A
Length = 402
Score = 23.8 bits (51), Expect = 5.0
Identities = 9/53 (16%), Positives = 12/53 (22%)
Query: 1 MGVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGK 53
G + KP + L D + R F L K
Sbjct: 230 DGAAALIVGSDPVPQEEKPLFEIHWAGEAVLPDSDGAINGHLREAGLIFHLLK 282
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann
fold, closed-form, ADP and glucose binding, glycogen
biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia
coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A*
3d1j_A
Length = 485
Score = 23.3 bits (51), Expect = 7.1
Identities = 10/49 (20%), Positives = 10/49 (20%)
Query: 1 MGVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKF 49
GVD L P VV T GV
Sbjct: 33 DGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIYL 81
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 23.3 bits (50), Expect = 9.8
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 18 KPGQVVVVHYTGTLT 32
+PG V V +G ++
Sbjct: 653 RPGSVAYVSRSGGMS 667
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.141 0.436
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,146,922
Number of extensions: 55988
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 49
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.4 bits)