RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16059
(67 letters)
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 113
Score = 56.7 bits (136), Expect = 5e-13
Identities = 38/64 (59%), Positives = 47/64 (73%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
V ++ +SPGDG T+PK G +V +HYTGTL +G KFDSS DRG PF+ +G G VIKGWD
Sbjct: 7 NVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWD 66
Query: 62 HGIA 65
GI
Sbjct: 67 VGIP 70
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 118
Score = 55.1 bits (132), Expect = 2e-12
Identities = 37/65 (56%), Positives = 41/65 (63%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV G G P G V VHY GTL +GTKFDSSRDRG F F LG+G+VIKGWD
Sbjct: 11 GVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWD 70
Query: 62 HGIAQ 66
G+A
Sbjct: 71 LGVAT 75
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an
immunophilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 52.9 bits (126), Expect = 1e-11
Identities = 45/64 (70%), Positives = 52/64 (81%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV VET+SPGDG+T+PK GQ VVHYTG L DG KFDSSRDR PFKF LGK +VI+GW+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 62 HGIA 65
G+A
Sbjct: 61 EGVA 64
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 52.1 bits (124), Expect = 2e-11
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 6 ETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRD-------RGVPFKFRLGKGDVIK 58
L GD +PK G VV YTGTL DGT FD++ P F++G G VI+
Sbjct: 6 SVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIR 65
Query: 59 GWDHGIAQ 66
GWD +
Sbjct: 66 GWDEALLT 73
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 111
Score = 51.7 bits (123), Expect = 4e-11
Identities = 31/61 (50%), Positives = 34/61 (55%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV G G+ P G V VHY G L +G KFDSS DR PF F +GKG VIK WD
Sbjct: 5 GVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWD 64
Query: 62 H 62
Sbjct: 65 I 65
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 51.3 bits (122), Expect = 6e-11
Identities = 35/63 (55%), Positives = 36/63 (57%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
GV G G P G V VHYTG L DGTKFDSS DR F F LGKG+VIK WD
Sbjct: 12 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWD 71
Query: 62 HGI 64
I
Sbjct: 72 IAI 74
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus
thermolithotrophicus [TaxId: 2186]}
Length = 151
Score = 50.2 bits (119), Expect = 3e-10
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 18 KPGQVVVVHYTGTLTDGTKFDSSRD-------------RGVPFKFRLGKGDVIKGWDHGI 64
G + V Y G L G FD+S + P +F +G+G +I+G++ +
Sbjct: 3 DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 115
Score = 48.9 bits (116), Expect = 5e-10
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ T G+G + P G V +H G G FD + D+ G D
Sbjct: 9 GIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCRDVAFTVGEGED--HDIPIGID 65
Query: 62 HGIAQ 66
+ +
Sbjct: 66 KALEK 70
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA
{Escherichia coli [TaxId: 562]}
Length = 210
Score = 47.5 bits (112), Expect = 5e-09
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 1 MGVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGW 60
G+ + + G G+ K VVV+Y GTL DG +FD+S RG P FRL VI GW
Sbjct: 107 TGLVYQVVEAGKGEAP-KDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGW 163
Query: 61 DHGIAQ 66
G+
Sbjct: 164 TEGLKN 169
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma
genitalium [TaxId: 2097]}
Length = 85
Score = 41.1 bits (96), Expect = 2e-07
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 17 PKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWDHGIA 65
G + ++ +TG + D K S+ + G IKG++ G+
Sbjct: 2 LANGDIAIIDFTGIV-DNKKLASASAQNYELTI--GSNSFIKGFETGLI 47
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 41.7 bits (97), Expect = 3e-07
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ + G+G P G +V V G D R + D+ G +
Sbjct: 9 GIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQ-RELRFEIGEG--ENLDLPYGLE 65
Query: 62 HGIAQ 66
I +
Sbjct: 66 RAIQR 70
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Legionella pneumophila [TaxId: 446]}
Length = 204
Score = 39.1 bits (90), Expect = 8e-06
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 1 MGVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGW 60
G+ + ++ G+G K V V YTG L DGT FDS+ G P F VI GW
Sbjct: 98 SGLQYKVINSGNGVKPGK-SDTVTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVIPGW 154
Query: 61 DHGIA 65
+
Sbjct: 155 TEALQ 159
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Trypanosoma cruzi [TaxId: 5693]}
Length = 160
Score = 34.4 bits (78), Expect = 2e-04
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ + ++ G G+ P VHYTG L DGT FDSSR+RG P F +VIKGW
Sbjct: 35 GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTF--RPNEVIKGWT 92
Query: 62 HGIA 65
+
Sbjct: 93 EALQ 96
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 125
Score = 34.1 bits (77), Expect = 2e-04
Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 2 GVDVETLSPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDRGVPFKFRLGKGDVIKGWD 61
G+ G G GQ++ HY G L +G FDSS +RG P FR+G G+VIKGWD
Sbjct: 9 GLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 67
Query: 62 HGI 64
GI
Sbjct: 68 QGI 70
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 477
Score = 25.0 bits (53), Expect = 0.88
Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 1/50 (2%)
Query: 1 MGVDVETLSPGDGQTYPK-PGQVVVVHYTGTLTDGTKFDSSRDRGVPFKF 49
GV TL PG V +T L + + +
Sbjct: 33 HGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDLLI 82
>d1ohta_ d.118.1.1 (A:) Peptidoglycan recognition protein-lb
(Cg14704) {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 174
Score = 24.3 bits (52), Expect = 1.4
Identities = 4/35 (11%), Positives = 10/35 (28%)
Query: 9 SPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSRDR 43
P + + P V++H++
Sbjct: 14 LPKSVEHFQGPAPYVIIHHSYMPAVCYSTPDCMKS 48
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 90
Score = 22.9 bits (49), Expect = 2.6
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 1 MGVDVETLSPGDGQTYPKPGQVVVVHYT 28
M D+ + P +G P+ G+ + +
Sbjct: 10 MRNDIASHPPVEGSYAPRRGEFCIAKFV 37
>d1sxra_ d.118.1.1 (A:) Peptidoglycan-recognition protein-SA
(Cg11709) {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 173
Score = 23.2 bits (49), Expect = 2.8
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 9 SPGDGQTYPKPGQVVVVHYTGTLTDGTKFDSSR 41
+P + VV+H+T T +
Sbjct: 14 PSLGLHYQVRPIRYVVIHHTVTGECSGLLKCAE 46
>d2f2la1 d.118.1.1 (A:355-520) Peptidoglycan-recognition
protein-LC {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 166
Score = 22.0 bits (46), Expect = 7.8
Identities = 4/31 (12%), Positives = 9/31 (29%)
Query: 11 GDGQTYPKPGQVVVVHYTGTLTDGTKFDSSR 41
+ P +V+ T + T+
Sbjct: 14 KEIPDLELPVGLVIALPTNSENCSTQAICVL 44
>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase
{Yeast (Candida tropicalis) [TaxId: 5482]}
Length = 175
Score = 22.0 bits (45), Expect = 9.8
Identities = 2/13 (15%), Positives = 3/13 (23%)
Query: 18 KPGQVVVVHYTGT 30
KP +
Sbjct: 153 KPLHELYQDGVAN 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.141 0.436
Gapped
Lambda K H
0.267 0.0488 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 278,829
Number of extensions: 10390
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 21
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.5 bits)