BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1606
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IAG|A Chain A, First Structure Of A Snake Venom Metalloproteinase: A
Prototype For Matrix
Metalloproteinases(Slash)collagenases
Length = 202
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 107/201 (53%)
Query: 81 NIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTE 140
N+ RY+ELV+V D R++ +N + ++ +I N+IN Y LNI ++L + +W+
Sbjct: 2 NLPQRYIELVVVADRRVFMKYNSDLNIIRTRVHEIVNIINKFYRSLNIRVSLTDLEIWSG 61
Query: 141 YDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEF 200
D IT+ + TL +F +R+ L++ +DNAQLLT + F ++GKA +C
Sbjct: 62 QDFITIQSSSSNTLNSFGEWRERVLLIWKRHDNAQLLTAINFEGKIIGKAYTSSMCNPRS 121
Query: 201 SGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPXXXXXXXXXXXXX 260
S G+ DH + LVA T+AHE+GHNLGMEHD +C + CIM P
Sbjct: 122 SVGIVKDHSPINLLVAVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTPGRSYEFSDD 181
Query: 261 XLEYLALSFDHGMDYCMRNKP 281
+ Y + C+ NKP
Sbjct: 182 SMGYYQKFLNQYKPQCILNKP 202
>pdb|2AIG|P Chain P, Adamalysin Ii With Peptidomimetic Inhibitor Pol647
pdb|3AIG|A Chain A, Adamalysin Ii With Peptidomimetic Inhibitor Pol656
Length = 202
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 106/201 (52%)
Query: 81 NIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTE 140
N+ RY+ELV+V D R++ +N + ++ +I N+IN Y LNI ++L + +W+
Sbjct: 2 NLPQRYIELVVVADRRVFMKYNSDLNIIRTRVHEIVNIINEFYRSLNIRVSLTDLEIWSG 61
Query: 141 YDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEF 200
D IT+ + TL +F +R+ L+ +DNAQLLT + F ++GKA +C
Sbjct: 62 QDFITIQSSSSNTLNSFGEWRERVLLTRKRHDNAQLLTAINFEGKIIGKAYTSSMCNPRS 121
Query: 201 SGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPXXXXXXXXXXXXX 260
S G+ DH + LVA T+AHE+GHNLGMEHD +C + CIM P
Sbjct: 122 SVGIVKDHSPINLLVAVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTPGRSYEFSDD 181
Query: 261 XLEYLALSFDHGMDYCMRNKP 281
+ Y + C+ NKP
Sbjct: 182 SMGYYQKFLNQYKPQCILNKP 202
>pdb|4AIG|A Chain A, Adamalysin Ii With Phosphonate Inhibitor
Length = 201
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 106/201 (52%)
Query: 81 NIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTE 140
N+ RY+ELV+V D R++ +N + ++ +I N+IN Y LNI ++L + +W+
Sbjct: 1 NLPQRYIELVVVADRRVFMKYNSDLNIIRTRVHEIVNIINEFYRSLNIRVSLTDLEIWSG 60
Query: 141 YDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEF 200
D IT+ + TL +F +R+ L+ +DNAQLLT + F ++GKA +C
Sbjct: 61 QDFITIQSSSSNTLNSFGEWRERVLLTRKRHDNAQLLTAINFEGKIIGKAYTSSMCNPRS 120
Query: 201 SGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPXXXXXXXXXXXXX 260
S G+ DH + LVA T+AHE+GHNLGMEHD +C + CIM P
Sbjct: 121 SVGIVKDHSPINLLVAVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTPGRSYEFSDD 180
Query: 261 XLEYLALSFDHGMDYCMRNKP 281
+ Y + C+ NKP
Sbjct: 181 SMGYYQKFLNQYKPQCILNKP 201
>pdb|3K7L|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
Distinct Activities Highlight The Disulfide Patterns In
The D Domain Of Adamalysin Family Proteins
Length = 422
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 111/199 (55%), Gaps = 8/199 (4%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
+Y+E +VVDN +Y + ++ ++ R ++ N +N +Y +LN IAL+G+ +W+ +EI
Sbjct: 14 KYIEFYVVVDNIMYRHYKRDQPVIKRKVYEMINTMNMIYRRLNFHIALIGLEIWSNINEI 73
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + TL F +R+ +L+ NDNAQLLTG+ F+ VG A G IC + S V
Sbjct: 74 NVQSDVRATLNLFGEWREKKLLPRKRNDNAQLLTGIDFNGTPVGLAYIGSICNPKTSAAV 133
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPXXXXXXXXXXXXXXLEY 264
D+ + +VA T+AHEMGHNLGM HD CTC ++C+M+ ++
Sbjct: 134 VQDYSSRTRMVAITMAHEMGHNLGMNHDRGFCTCGFNKCVMS--------TRRTKPAYQF 185
Query: 265 LALSFDHGMDYCMRNKPKA 283
+ S Y +R++P+
Sbjct: 186 SSCSVREHQRYLLRDRPQC 204
>pdb|2ERO|A Chain A, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERO|B Chain B, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERP|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERP|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERQ|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
pdb|2ERQ|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
Length = 427
Score = 134 bits (336), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 96/162 (59%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
+Y++L +V D +Y + +N V DI NVI +Y ++NI +ALVG+ +W+ D+I
Sbjct: 16 KYVKLFLVADYIMYLKYGRNLTAVRTRMYDIVNVITPIYHRMNIHVALVGLEIWSNTDKI 75
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + D+TL F +R L+ +DNAQLLTG+ F+ G G IC +S G+
Sbjct: 76 IVQSSADVTLDLFAKWRATDLLSRKSHDNAQLLTGINFNGPTAGLGYLGGICNTMYSAGI 135
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMA 246
DH + LVA +AHEMGHNLGM+HD CTC + C+MA
Sbjct: 136 VQDHSKIHHLVAIAMAHEMGHNLGMDHDKDTCTCGTRPCVMA 177
>pdb|3K7N|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
Distinct Activities Highlight The Disulfide Patterns In
The D Domain Of Adamalysin Family Proteins
Length = 397
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
+Y+E ++VDNR+Y +N + + ++ N +N + L I IAL+G+ +W+ D+
Sbjct: 9 KYIEFYVIVDNRMYRYYNNDKPAIKIKVYEMINAVNTKFRPLKIHIALIGLEIWSNKDKF 68
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ +TL +F +R+ L+ NDNAQLLTG+ F+ VG+A G +C S +
Sbjct: 69 EVKPAASVTLKSFGEWRETVLLPRKRNDNAQLLTGIDFNGNTVGRAYIGSLCKTNESVAI 128
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPXXXXXXXXXXXXXXLEY 264
D+ + LVA+T+ HE+GHNLG+ HD C C CIM ++
Sbjct: 129 VQDYNRRISLVASTITHELGHNLGIHHDKASCICIPGPCIM--------LKKRTAPAFQF 180
Query: 265 LALSFDHGMDYCMRNKPKA 283
+ S +Y +R++P+
Sbjct: 181 SSCSIREYREYLLRDRPQC 199
>pdb|1QUA|A Chain A, Crystal Structure Of Acutolysin-c, A Hemorrhagic Toxin
From The Snake Venom Of Agkistrodon Acutus, At 2.2 A
Resolution
Length = 197
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 96/161 (59%), Gaps = 2/161 (1%)
Query: 87 LELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITL 146
+EL ++VD+ +Y +N NS + K N++NA+Y LN+ I L G+ +W+ D IT+
Sbjct: 7 IELFLIVDHSMYAKYNSNSSKITTTLKARVNIMNAIYSSLNLVITLSGIEMWSAADLITV 66
Query: 147 NVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNV 206
+ TL F S+R+ L+ NDNAQLLT F+ VG A +C ++S G+
Sbjct: 67 QSSSRNTLKLFASWRETDLLKRTSNDNAQLLTATNFNGNTVGLAYLKTMCNSKYSVGLIQ 126
Query: 207 DHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAP 247
DH + L+A T+AHE+GHNLGM HD C+C + CIMAP
Sbjct: 127 DHSAIPLLMAVTMAHELGHNLGMNHDGAGCSCAT--CIMAP 165
>pdb|1DTH|A Chain A, Metalloprotease
pdb|1DTH|B Chain B, Metalloprotease
Length = 203
Score = 127 bits (318), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 101/203 (49%)
Query: 79 NANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVW 138
N+ RY+ELV+V D+R++ +N + + +I N IN Y LNI ++L + +W
Sbjct: 1 QQNLPQRYIELVVVADHRVFMKYNSDLNTIRTRVHEIVNFINGFYRSLNIHVSLTDLEIW 60
Query: 139 TEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTY 198
+ D+I + TL F +R+ L+ +DNAQLLT + + +G A G +C
Sbjct: 61 SNEDQINIQSASSDTLNAFAEWRETDLLNRKSHDNAQLLTAIELDEETLGLAPLGTMCDP 120
Query: 199 EFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPXXXXXXXXXXX 258
+ S G+ DH + L+ T+AHE+GHNLGMEHD +C + CIM P
Sbjct: 121 KLSIGIVQDHSPINLLMGVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTKGRSYEFS 180
Query: 259 XXXLEYLALSFDHGMDYCMRNKP 281
+ Y C+ NKP
Sbjct: 181 DDSMHYYERFLKQYKPQCILNKP 203
>pdb|1HTD|A Chain A, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Ht-D)
pdb|1HTD|B Chain B, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Ht-D)
pdb|1ATL|A Chain A, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Form-D)
pdb|1ATL|B Chain B, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Form-D)
Length = 202
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 101/201 (50%)
Query: 81 NIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTE 140
N+ RY+ELV+V D+R++ +N + + +I N IN Y LNI ++L + +W+
Sbjct: 2 NLPQRYIELVVVADHRVFMKYNSDLNTIRTRVHEIVNFINGFYRSLNIHVSLTDLEIWSN 61
Query: 141 YDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEF 200
D+I + TL F +R+ L+ +DNAQLLT + + +G A G +C +
Sbjct: 62 EDQINIQSASSDTLNAFAEWRETDLLNRKSHDNAQLLTAIELDEETLGLAPLGTMCDPKL 121
Query: 201 SGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPXXXXXXXXXXXXX 260
S G+ DH + L+ T+AHE+GHNLGMEHD +C + CIM P
Sbjct: 122 SIGIVQDHSPINLLMGVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTKGRSYEFSDD 181
Query: 261 XLEYLALSFDHGMDYCMRNKP 281
+ Y C+ NKP
Sbjct: 182 SMHYYERFLKQYKPQCILNKP 202
>pdb|4DD8|A Chain A, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|B Chain B, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|C Chain C, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|D Chain D, Adam-8 Metalloproteinase Domain With Bound Batimastat
Length = 208
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 110/206 (53%), Gaps = 10/206 (4%)
Query: 83 KSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYD 142
++RY+EL +VVDN + + + + HR ++ N ++ LY+KLN + LVG+ +W D
Sbjct: 3 ETRYVELYVVVDNAEFQMLGSEAAVRHR-VLEVVNHVDKLYQKLNFRVVLVGLEIWNSQD 61
Query: 143 EITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSG 202
++ + +TL N L+++ + H +DN QL+TG+ F+ VG A +C++ SG
Sbjct: 62 RFHVSPDPSVTLENLLTWQARQRTRRHLHDNVQLITGVDFTGTTVGFARVSAMCSHS-SG 120
Query: 203 GVNVDH-KNVVGLVATTVAHEMGHNLGMEHD--TTECTCP----SDRCIMAPXXXXXXXX 255
VN DH KN VG VA T+AHEMGHNLGM+HD C C + RCIMA
Sbjct: 121 AVNQDHSKNPVG-VACTMAHEMGHNLGMDHDENVQGCRCQERFEAGRCIMAGSIGSSFPR 179
Query: 256 XXXXXXLEYLALSFDHGMDYCMRNKP 281
YL + C+ N P
Sbjct: 180 MFSDCSQAYLESFLERPQSVCLANAP 205
>pdb|1R54|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Adam33
pdb|1R55|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Adam 33
Length = 214
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 5/207 (2%)
Query: 79 NANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVW 138
A +YLEL IV D+ L+ ++N + + +++N ++ L L+I +AL G+ VW
Sbjct: 1 EARRTRKYLELYIVADHTLFLTRHRNLQHTKQRLLEVANYVDQLLRTLDIQVALTGLEVW 60
Query: 139 TEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTY 198
TE D + + + TL FL +R+ L P+D+AQLLTG F VG A +C
Sbjct: 61 TERDRSRVTQDANATLWAFLQWRRG-LWAQRPHDSAQLLTGRAFQGATVGLAPVEGMCRA 119
Query: 199 EFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTEC----TCPSDRCIMAPXXXXXXX 254
E SGGV+ DH + A T+AHE+GH+LG+ HD C S C+MA
Sbjct: 120 ESSGGVSTDHSELPIGAAATMAHEIGHSLGLSHDPDGCCVEAAAESGGCVMAAATGHPFP 179
Query: 255 XXXXXXXLEYLALSFDHGMDYCMRNKP 281
L F G C+ N P
Sbjct: 180 RVFSACSRRQLRAFFRKGGGACLSNAP 206
>pdb|1WNI|A Chain A, Crystal Structure Of H2-Proteinase
Length = 201
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 84 SRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDE 143
RY+EL IVVD+ +Y +N+NS + + N IN +Y LNI I+L + +W++ D
Sbjct: 5 QRYIELAIVVDHGMYKKYNQNSDKIKVRVHQMVNHINEMYRPLNIAISLNRLQIWSKKDL 64
Query: 144 ITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGG 203
IT+ ++TL +F ++R+ L+ ND A LLT +D +G A K +C + S G
Sbjct: 65 ITVKSASNVTLESFGNWRETVLLKQQNNDCAHLLTATNLNDNTIGLAYKKGMCNPKLSVG 124
Query: 204 VNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMA 246
+ D+ V +VA T+ HE+GHNLGMEHD + C + CIM+
Sbjct: 125 LVQDYSPNVFMVAVTMTHELGHNLGMEHDDKD-KCKCEACIMS 166
>pdb|1BUD|A Chain A, Acutolysin A From Snake Venom Of Agkistrodon Acutus At Ph
5.0
Length = 197
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 90/163 (55%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
RY+E+VIVVD+ + +N +S + ++ N I Y L I I+L G+ +W+ D I
Sbjct: 3 RYMEIVIVVDHSMVKKYNGDSDSIKAWVYEMINTITESYSYLKIDISLSGLEIWSGKDLI 62
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + TL +F +R L+ +DNAQLLT F +G A +C + S GV
Sbjct: 63 DVEASAGNTLKSFGEWRAKDLIHRISHDNAQLLTATDFDGATIGLAYVASMCNPKRSVGV 122
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAP 247
DH +V LVA T+AHEM HNLG+ HD C+C CIM+P
Sbjct: 123 IQDHSSVNRLVAITLAHEMAHNLGVSHDEGSCSCGGKSCIMSP 165
>pdb|1BSW|A Chain A, Acutolysin A From Snake Venom Of Agkistrodon Acutus At Ph
7.5
Length = 197
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 90/163 (55%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
RY+E+VIVVD+ + +N +S + ++ N I Y L I I+L G+ +W+ D I
Sbjct: 3 RYMEIVIVVDHSMVKKYNGDSDSIKAWVYEMINTITESYSYLKIDISLSGLEIWSGKDLI 62
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + TL +F +R L+ +DNAQLLT F +G A +C + S GV
Sbjct: 63 DVEASAGNTLKSFGEWRAKDLIHRISHDNAQLLTATDFDGATIGLAYVASMCNPKRSVGV 122
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAP 247
DH +V LVA T+AHEM HNLG+ HD C+C CIM+P
Sbjct: 123 IQDHSSVNRLVAITLAHEMAHNLGVSHDEGSCSCGGKSCIMSP 165
>pdb|3GBO|A Chain A, Crystal Structure Of Bmoompalpha-I, A Non-Hemorrhagic
Metalloproteinase Isolated From Bothrops Moojeni Snake
Venom
Length = 200
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 94/162 (58%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
R++ELV+V D+ ++ +N N + + ++ N +N Y +++ +L + VW++ D I
Sbjct: 4 RHIELVVVADHGMFKKYNSNLNTIRKWVHEMVNSMNGFYRSVDVTASLANLEVWSKKDLI 63
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + TL +F +R+ L+ +DNAQLLT + F V+G+A G +C S GV
Sbjct: 64 NVQKDSRETLKSFGEWRERDLLPRISHDNAQLLTTIVFDGHVIGRAFTGGMCDPRHSVGV 123
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMA 246
+DH VA T+AHE+GHNLGM HD +C C + CIMA
Sbjct: 124 VMDHSPKNLQVAVTMAHELGHNLGMHHDGNQCHCDAASCIMA 165
>pdb|3HDB|A Chain A, Crystal Structure Of Aahiv, A Metalloproteinase From Venom
Of Agkistrodon Acutus
Length = 417
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 93/163 (57%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
+Y+E V VVD + +N + + + +N +N +Y + + +VG+++WTE D+I
Sbjct: 5 KYVETVFVVDKAMVTKYNGDLDKIKTKMYEAANNMNEMYRYMFFRVVMVGLIIWTEEDKI 64
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
T+ + D TL F +RK L+ +DNAQL+TG+ F ++G A G +C + S G+
Sbjct: 65 TVKPDVDYTLNAFAEWRKTYLLAEKKHDNAQLITGIDFRGSIIGYAYIGSMCHPKRSVGI 124
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAP 247
D+ + ++A +AHEMGHNLG+ HD C C CIM P
Sbjct: 125 IQDYSPINLVLAVIMAHEMGHNLGIHHDDGYCYCGGYPCIMGP 167
>pdb|1ND1|A Chain A, Amino Acid Sequence And Crystal Structure Of Bap1, A
Metalloproteinase From Bothrops Asper Snake Venom That
Exerts Multiple Tissue-Damaging Activities
Length = 202
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
RY+EL +V D+ ++ +N N + ++ N +N Y +++ L + VW++ D I
Sbjct: 6 RYIELAVVADHGIFTKYNSNLNTIRTRVHEMLNTVNGFYRSVDVHAPLANLEVWSKQDLI 65
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + TL +F +R+ L+ +D+AQLLT + F +G+A G +C S GV
Sbjct: 66 KVQKDSSKTLKSFGEWRERDLLPRISHDHAQLLTAVVFDGNTIGRAYTGGMCDPRHSVGV 125
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMA 246
DH VA T+AHE+GHNLG++HDT C+C + CIMA
Sbjct: 126 VRDHSKNNLWVAVTMAHELGHNLGIDHDTGSCSCGAKSCIMA 167
>pdb|2W12|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W13|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W14|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W15|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
Length = 202
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 90/162 (55%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
RY+EL +V D+ ++ +N N + ++ N +N Y +++ L + VW++ D I
Sbjct: 6 RYIELAVVADHGIFTKYNSNLNTIRTRVHEMLNTVNGFYRSVDVHAPLANLEVWSKQDLI 65
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + TL +F +R+ L+ +D+AQLLT + F +G+A G +C S GV
Sbjct: 66 KVQKDSSKTLKSFGEWRERDLLPRISHDHAQLLTAVVFDGNTIGRAYTGGMCDPRHSVGV 125
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMA 246
DH VA T+AHE+GHNLG+ HDT C+C + CIMA
Sbjct: 126 VRDHSKNNLWVAVTMAHELGHNLGIHHDTGSCSCGAKSCIMA 167
>pdb|1KUF|A Chain A, High-Resolution Crystal Structure Of A Snake Venom
Metalloproteinase From Taiwan Habu
pdb|1KUI|A Chain A, Crystal Structure Of A Taiwan Habu Venom Metalloproteinase
Complexed With Peqw.
pdb|1KUK|A Chain A, Crystal Structure Of A Taiwan Habu Venom Metalloproteinase
Complexed With Pekw
Length = 203
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 1/198 (0%)
Query: 84 SRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDE 143
RY+EL IVVD+ +Y ++ N K + + + + IN + LNI I L + VW+E D
Sbjct: 7 QRYIELAIVVDHGMYTKYSSNFKKIRKRVHQMVSNINEMCRPLNIAITLALLDVWSEKDF 66
Query: 144 ITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGG 203
IT+ + T F +R+ L+ +D+AQLLT F+ +G A G +C ++S
Sbjct: 67 ITVQADAPTTAGLFGDWRERVLLKKKNHDHAQLLTDTNFARNTIGWAYVGRMCDEKYSVA 126
Query: 204 VNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPXXXXXXXXXXXXXXLE 263
V DH + V +VA T+ HE+GHNLGMEHD + C D CIM+ +
Sbjct: 127 VVKDHSSKVFMVAVTMTHELGHNLGMEHDDKD-KCKCDTCIMSAVISDKQSKLFSDCSKD 185
Query: 264 YLALSFDHGMDYCMRNKP 281
Y + C+ N P
Sbjct: 186 YYQTFLTNDNPQCILNAP 203
>pdb|3DSL|B Chain B, The Three-Dimensional Structure Of Bothropasin, The Main
Hemorrhagic Factor From Bothrops Jararaca Venom.
pdb|3DSL|A Chain A, The Three-Dimensional Structure Of Bothropasin, The Main
Hemorrhagic Factor From Bothrops Jararaca Venom
Length = 419
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 94/163 (57%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
RY+EL IVVD + N + + +++N++N + L + ALVG+ +W+ D+I
Sbjct: 7 RYVELFIVVDQGMVTKNNGDLDKIKARMYELANIVNEILRYLYMHAALVGLEIWSNGDKI 66
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
T+ + D TL +F +RK L+ +DNAQLLT + F+ +G A G +C + S +
Sbjct: 67 TVKPDVDYTLNSFAEWRKTDLLTRKKHDNAQLLTAIDFNGPTIGYAYIGSMCHPKRSVAI 126
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAP 247
D+ + +VA +AHEMGHNLG+ HDT C+C CIM P
Sbjct: 127 VEDYSPINLVVAVIMAHEMGHNLGIHHDTDFCSCGDYPCIMGP 169
>pdb|2DW0|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW0|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW1|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW1|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW2|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
pdb|2DW2|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
Length = 419
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
R++ELV+VVD + N + + +I N +N +Y + I +ALVG+ +W+ D+I
Sbjct: 8 RFVELVLVVDKAMVTKNNGDLDKIKTRMYEIVNTVNEIYRYMYIHVALVGLEIWSNEDKI 67
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
T+ TL F +RK L+ +DNAQLLT + D V+G A G +C + S G+
Sbjct: 68 TVKPEAGYTLNAFGEWRKTDLLTRKKHDNAQLLTAIDL-DRVIGLAYVGSMCHPKRSTGI 126
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAP 247
D+ + +VA +AHEMGHNLG+ HD+ C+C CIM P
Sbjct: 127 IQDYSEINLVVAVIMAHEMGHNLGINHDSGYCSCGDYACIMRP 169
>pdb|1KUG|A Chain A, Crystal Structure Of A Taiwan Habu Venom Metalloproteinase
Complexed With Its Endogenous Inhibitor Penw
Length = 203
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 3/199 (1%)
Query: 84 SRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDE 143
RY+EL IVVD+ +Y ++ N K + + + + IN + LNI I L + VW+E D
Sbjct: 7 QRYIELAIVVDHGMYTKYSSNFKKIRKRVHQMVSNINEMCRPLNIAITLALLDVWSEKDF 66
Query: 144 ITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGG 203
IT+ + T F +R+ L+ +D+AQLLT F+ +G A G +C ++S
Sbjct: 67 ITVQADAPTTAGLFGDWRERVLLKKKNHDHAQLLTDTNFARNTIGWAYVGRMCDEKYSVA 126
Query: 204 VNVDHKNVVGLVATTVAHEMGHNLGMEHDTTE-CTCPSDRCIMAPXXXXXXXXXXXXXXL 262
V DH + V +VA T+ HE+GHNLGMEHD + C C + CIM+
Sbjct: 127 VVKDHSSKVFMVAVTMTHELGHNLGMEHDDKDKCKCTT--CIMSAVISDKQSKLFSDCSK 184
Query: 263 EYLALSFDHGMDYCMRNKP 281
+Y + C+ N P
Sbjct: 185 DYYQTFLTNDNPQCILNAP 203
>pdb|1YP1|A Chain A, Crystal Structure Of A Non-hemorrhagic Fibrin(ogen)olytic
Metalloproteinase From Venom Of Agkistrodon Acutus
Length = 202
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 1/159 (0%)
Query: 89 LVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITLNV 148
L +VVD+ ++ +N ++K + N++ ++++ L + I L G+ +WT D IT+
Sbjct: 9 LQLVVDSSMFAKYNGDAKKIVTVLDTRVNIMKSIFKPLLLLITLSGIEMWTSKDLITVKP 68
Query: 149 NGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDH 208
GD+TL+ F +R+ L+ NDNAQL T + F VVG A G +C ++S G+ D
Sbjct: 69 AGDLTLSLFADWRQTLLLSRILNDNAQLQTAVDFRGAVVGLAFVGTMCNAKYSAGIIQDF 128
Query: 209 KNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAP 247
+ L+A +AHE+GHNLGM HD +C D CIMAP
Sbjct: 129 SAIPLLMAVVMAHELGHNLGMLHDDGY-SCDCDVCIMAP 166
>pdb|2E3X|A Chain A, Crystal Structure Of Russell's Viper Venom
Metalloproteinase
Length = 427
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 2/169 (1%)
Query: 79 NANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVW 138
+A ++ELVI+VD+ + N S + +I N N ++ LNI + L+GV W
Sbjct: 5 SAQFNKIFIELVIIVDHSMAKKCN--STATNTKIYEIVNSANEIFNPLNIHVTLIGVEFW 62
Query: 139 TEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTY 198
+ D I + + D TL +F +R L+ +DNA L T M F +G +C
Sbjct: 63 CDRDLINVTSSADETLNSFGEWRASDLMTRKSHDNALLFTDMRFDLNTLGITFLAGMCQA 122
Query: 199 EFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAP 247
S G+ + N A +AHE+ HNLGM HD C C C+M+P
Sbjct: 123 YRSVGIVQEQGNRNFKTAVIMAHELSHNLGMYHDGKNCICNDSSCVMSP 171
>pdb|3G5C|A Chain A, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
pdb|3G5C|B Chain B, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
Length = 510
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 13/211 (6%)
Query: 79 NANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALY-EKLNIFIALVGVVV 137
N +++Y+EL+IV D+ ++ + + + K + N+ + +Y ++L I LV +
Sbjct: 1 NVEEETKYIELMIVNDHLMFKKHRLSVVHTNTYAKSVVNMADLIYKDQLKTRIVLVAMET 60
Query: 138 WTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICT 197
W ++ ++ N ITL F+ YR+D + +D L +G F G A G IC+
Sbjct: 61 WATDNKFAISENPLITLREFMKYRRD--FIKEKSDAVHLFSGSQFESSRSGAAYIGGICS 118
Query: 198 YEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHD-----TTECTCPS--DRCIMAPXXX 250
GGVN K L+A T+A + HN+G+ D + EC C CIM
Sbjct: 119 LLKGGGVNEFGK--TDLMAVTLAQSLAHNIGIISDKRKLASGECKCEDTWSGCIMGDTGY 176
Query: 251 XXXXXXXXXXXLEYLALSFDHGMDYCMRNKP 281
EY + G C+ NKP
Sbjct: 177 YLPKKFTQCNIEEYHDF-LNSGGGACLFNKP 206
>pdb|2RJQ|A Chain A, Crystal Structure Of Adamts5 With Inhibitor Bound
Length = 378
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 21/167 (12%)
Query: 83 KSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNI----FIALVGVVVW 138
++R +EL++V D + L+ + + + ++++ N LY +I +A+V VVV
Sbjct: 4 RARQVELLLVADASMARLYGRG---LQHYLLTLASIANRLYSHASIENHIRLAVVKVVVL 60
Query: 139 TEYDE-ITLNVNGDITLTNFLSYRKDRLVLSHPN----DNAQLLTGMTF----SDGVVGK 189
+ D+ + ++ N TL NF ++ L + D A L T S +G
Sbjct: 61 GDKDKSLEVSKNAATTLKNFCKWQHQHNQLGDDHEEHYDAAILFTREDLCGHHSCDTLGM 120
Query: 190 ALKGPICTYEFSGGVNVDHKNVVGL-VATTVAHEMGHNLGMEHDTTE 235
A G IC+ E S V D GL A TVAHE+GH LG+ HD ++
Sbjct: 121 ADVGTICSPERSCAVIEDD----GLHAAFTVAHEIGHLLGLSHDDSK 163
>pdb|3HY7|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With Marimastat
pdb|3HY7|B Chain B, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With Marimastat
pdb|3HY9|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
pdb|3HY9|B Chain B, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
pdb|3HYG|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
pdb|3HYG|B Chain B, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
Length = 221
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 83 KSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNI----FIALVGVVVW 138
++R +EL++V D + + + + + ++++ N LY +I +A+V VVV
Sbjct: 6 RARQVELLLVADASMARKYGRG---LQHYLLTLASIANRLYSHASIENHIRLAVVKVVVL 62
Query: 139 TEYDE-ITLNVNGDITLTNFLSYRKDRLVLSHPN----DNAQLLTGMTF----SDGVVGK 189
+ D+ + ++ N TL NF ++ L + D A L T S +G
Sbjct: 63 GDKDKSLEVSKNAATTLKNFCKWQHQHNQLGDDHEEHYDAAILFTREDLCGHHSCDTLGM 122
Query: 190 ALKGPICTYEFSGGVNVDHKNVVGL-VATTVAHEMGHNLGMEHDTTE 235
A G IC+ E S V D GL A TVAHE+GH LG+ HD ++
Sbjct: 123 ADVGTICSPERSCAVIEDD----GLHAAFTVAHEIGHLLGLSHDDSK 165
>pdb|3LJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
Length = 218
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 83 KSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNI----FIALVGVVVW 138
++R +EL++V D + + + + + ++++ N LY +I +A+V VVV
Sbjct: 3 RARQVELLLVADASMARKYGRG---LQHYLLTLASIANRLYSHASIENHIRLAVVKVVVL 59
Query: 139 TEYDE-ITLNVNGDITLTNFLSYRKDRLVLSHPN----DNAQLLTGMTF----SDGVVGK 189
+ D+ + ++ N TL NF ++ L + D A L T S +G
Sbjct: 60 GDKDKSLEVSKNAATTLKNFCKWQHQHNQLGDDHEEHYDAAILFTREDLCGHHSCDTLGM 119
Query: 190 ALKGPICTYEFSGGVNVDHKNVVGL-VATTVAHEMGHNLGMEHDTTE 235
A G IC+ E S V D GL A TVAHE+GH LG+ HD ++
Sbjct: 120 ADVGTICSPERSCAVIEDD----GLHAAFTVAHEIGHLLGLSHDDSK 162
>pdb|3B8Z|A Chain A, High Resolution Crystal Structure Of The Catalytic Domain
Of Adamts-5 (Aggrecanase-2)
pdb|3B8Z|B Chain B, High Resolution Crystal Structure Of The Catalytic Domain
Of Adamts-5 (Aggrecanase-2)
Length = 217
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 83 KSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNI----FIALVGVVVW 138
++R +EL++V D + + + + + ++++ N LY +I +A+V VVV
Sbjct: 2 RARQVELLLVADASMARKYGRG---LQHYLLTLASIANRLYSHASIENHIRLAVVKVVVL 58
Query: 139 TEYDE-ITLNVNGDITLTNFLSYRKDRLVLSHPN----DNAQLLTGMTF----SDGVVGK 189
+ D+ + ++ N TL NF ++ L + D A L T S +G
Sbjct: 59 GDKDKSLEVSKNAATTLKNFCKWQHQHNQLGDDHEEHYDAAILFTREDLCGHHSCDTLGM 118
Query: 190 ALKGPICTYEFSGGVNVDHKNVVGL-VATTVAHEMGHNLGMEHDTTE 235
A G IC+ E S V D GL A TVAHE+GH LG+ HD ++
Sbjct: 119 ADVGTICSPERSCAVIEDD----GLHAAFTVAHEIGHLLGLSHDDSK 161
>pdb|3Q2G|A Chain A, Adamts1 In Complex With A Novel N-Hydroxyformamide
Inhibitors
pdb|3Q2G|B Chain B, Adamts1 In Complex With A Novel N-Hydroxyformamide
Inhibitors
pdb|3Q2H|A Chain A, Adamts1 In Complex With N-Hydroxyformamide Inhibitors Of
Adam-Ts4
pdb|3Q2H|B Chain B, Adamts1 In Complex With N-Hydroxyformamide Inhibitors Of
Adam-Ts4
Length = 297
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 87/219 (39%), Gaps = 29/219 (13%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNI--FIALVGVVVWTEYD 142
RY+E ++V D + K + + +V LY+ +I ++LV V + +D
Sbjct: 3 RYVETMLVADQSMAEFHGSGLK---HYLLTLFSVAARLYKHPSIRNSVSLVVVKILVIHD 59
Query: 143 EIT---LNVNGDITLTNFLSYRKDRLVLSHPN----DNAQLLTGMTFSDG----VVGKAL 191
E + N +TL NF +++K S + D A L T +G A
Sbjct: 60 EQKGPEVTSNAALTLRNFCNWQKQHNPPSDRDAEHYDTAILFTRQDLCGSQTCDTLGMAD 119
Query: 192 KGPICTYEFSGGVNVDHKNVVGLVAT-TVAHEMGHNLGMEHDTTECTCPS------DRCI 244
G +C S V D GL A T AHE+GH M HD + C S D +
Sbjct: 120 VGTVCDPSRSCSVIEDD----GLQAAFTTAHELGHVFNMPHDDAK-QCASLNGVNQDSHM 174
Query: 245 MAPXXXXXXXXXXXXXXLEYLALSF-DHGMDYCMRNKPK 282
MA Y+ SF D+G C+ +KP+
Sbjct: 175 MASMLSNLDHSQPWSPCSAYMITSFLDNGHGECLMDKPQ 213
>pdb|2JIH|A Chain A, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-rich Domain (complex-form)
pdb|2JIH|B Chain B, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-rich Domain (complex-form)
pdb|2V4B|A Chain A, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-Rich Domain (Apo-Form)
pdb|2V4B|B Chain B, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-Rich Domain (Apo-Form)
Length = 300
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 87/219 (39%), Gaps = 29/219 (13%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNI--FIALVGVVVWTEYD 142
RY+E ++V D + K + + +V LY+ +I ++LV V + +D
Sbjct: 6 RYVETMLVADQSMAEFHGSGLK---HYLLTLFSVAARLYKHPSIRNSVSLVVVKILVIHD 62
Query: 143 EIT---LNVNGDITLTNFLSYRKDRLVLSHPN----DNAQLLTGMTFSDG----VVGKAL 191
E + N +TL NF +++K S + D A L T +G A
Sbjct: 63 EQKGPEVTSNAALTLRNFCNWQKQHNPPSDRDAEHYDTAILFTRQDLCGSQTCDTLGMAD 122
Query: 192 KGPICTYEFSGGVNVDHKNVVGLVAT-TVAHEMGHNLGMEHDTTECTCPS------DRCI 244
G +C S V D GL A T AHE+GH M HD + C S D +
Sbjct: 123 VGTVCDPSRSCSVIEDD----GLQAAFTTAHELGHVFNMPHDDAK-QCASLNGVNQDSHM 177
Query: 245 MAPXXXXXXXXXXXXXXLEYLALSF-DHGMDYCMRNKPK 282
MA Y+ SF D+G C+ +KP+
Sbjct: 178 MASMLSNLDHSQPWSPCSAYMITSFLDNGHGECLMDKPQ 216
>pdb|2RJP|A Chain A, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|B Chain B, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|C Chain C, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|D Chain D, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|3B2Z|A Chain A, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|B Chain B, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|C Chain C, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|D Chain D, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|E Chain E, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|F Chain F, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|G Chain G, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|H Chain H, Crystal Structure Of Adamts4 (Apo Form)
Length = 316
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 38/226 (16%)
Query: 84 SRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNI-----FIALVGVVVW 138
SR++E ++V D+++ K R+ + ++ +I + V++
Sbjct: 5 SRFVETLVVADDKMAAFHGAGLK---RYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVILG 61
Query: 139 TEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDN------------AQLLTGMTFSDGV 186
+ + + + TL +F ++++ L+ P D+ Q L G++ D
Sbjct: 62 SGEEGPQVGPSAAQTLRSFCAWQRG---LNTPEDSDPDHFDTAILFTRQDLCGVSTCD-T 117
Query: 187 VGKALKGPICTYEFSGGVNVDHKNVVGL-VATTVAHEMGHNLGMEHDTTECTCPS----- 240
+G A G +C S + D GL A T AH++GH M HD ++ C S
Sbjct: 118 LGMADVGTVCDPARSCAIVEDD----GLQSAFTAAHQLGHVFNMLHDNSK-PCISLNGPL 172
Query: 241 --DRCIMAPXXXXXXXXXXXXXXLEYLALSF-DHGMDYCMRNKPKA 283
R +MAP F D+G +C+ +KP+A
Sbjct: 173 STSRHVMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHCLLDKPEA 218
>pdb|2BVJ|A Chain A, Ligand-Free Structure Of Cytochrome P450 Pikc (Cyp107l1)
pdb|2BVJ|B Chain B, Ligand-Free Structure Of Cytochrome P450 Pikc (Cyp107l1)
pdb|2C6H|A Chain A, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2C6H|B Chain B, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2C7X|A Chain A, Crystal Structure Of Narbomycin-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2CA0|A Chain A, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2CA0|B Chain B, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2CD8|A Chain A, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
pdb|2CD8|B Chain B, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
(Cyp107l1)
Length = 436
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 166 VLSHPNDNAQLLTGMTFSDGVVGKALK--GPI--CTYEF 200
+LSHP+ A L MT DG V + L+ GP+ TY F
Sbjct: 279 LLSHPDQLAALRADMTLLDGAVEEMLRYEGPVESATYRF 317
>pdb|2WHW|A Chain A, Selective Oxidation Of Carbolide C-H Bonds By Engineered
Macrolide P450 Monooxygenase
pdb|2WHW|B Chain B, Selective Oxidation Of Carbolide C-H Bonds By Engineered
Macrolide P450 Monooxygenase
pdb|2WI9|A Chain A, Selective Oxidation Of Carbolide C-H Bonds By Engineered
Macrolide P450 Monooxygenase
pdb|2WI9|B Chain B, Selective Oxidation Of Carbolide C-H Bonds By Engineered
Macrolide P450 Monooxygenase
Length = 436
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 166 VLSHPNDNAQLLTGMTFSDGVVGKALK--GPI--CTYEF 200
+LSHP+ A L MT DG V + L+ GP+ TY F
Sbjct: 279 LLSHPDQLAALRADMTLLDGAVEEMLRYEGPVESATYRF 317
>pdb|2VZ7|A Chain A, Crystal Structure Of The Yc-17-Bound Pikc D50n Mutant
pdb|2VZ7|B Chain B, Crystal Structure Of The Yc-17-Bound Pikc D50n Mutant
pdb|2VZM|A Chain A, Crystal Structure Of The Narbomycin-Bound Pikc D50n Mutant
pdb|2VZM|B Chain B, Crystal Structure Of The Narbomycin-Bound Pikc D50n Mutant
Length = 436
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 166 VLSHPNDNAQLLTGMTFSDGVVGKALK--GPI--CTYEF 200
+LSHP+ A L MT DG V + L+ GP+ TY F
Sbjct: 279 LLSHPDQLAALRADMTLLDGAVEEMLRYEGPVESATYRF 317
>pdb|3LMC|A Chain A, Crystal Structure Of Zinc-Dependent Peptidase From
Methanocorpusculum Labreanum (Strain Z), Northeast
Structural Genomics Consortium Target Mur16
Length = 210
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 143 EITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGV--VGKALKGPICTYEF 200
+I + D+ N ++ ++++L P D + L F +G A+ P
Sbjct: 69 QIFKPADXDLEFYNKFNHLHEKILLVTPGDLYEPLADFVFGLAYPKLGVAIVSPHRLQNE 128
Query: 201 SGGVNVDHKNVVGLVATTVAHEMGHNLGMEH-DTTECT--CPSD 241
G D ++ + AHE+GH G+ H D C CP +
Sbjct: 129 FYGKYADDSALIDRIVKEGAHEIGHLFGLGHCDNPGCIXYCPRN 172
>pdb|2FV9|A Chain A, Crystal Stucture Of Tace In Complex With Jmv 390-1
pdb|2FV9|B Chain B, Crystal Stucture Of Tace In Complex With Jmv 390-1
Length = 258
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 29/103 (28%)
Query: 174 AQLLTGMTFSDGVVGKALKG-----------PICTYEFSGGVNV-------DHKNVVGLV 215
A L T F G +G A G P Y G N+ KN +
Sbjct: 118 AHLFTYQDFDMGTLGLAYGGSPRANSHGGVCPKAYYSPVGKKNIYLNSGLTSTKNYGKTI 177
Query: 216 ATTVA-----HEMGHNLGMEHDT---TECTCPSD---RCIMAP 247
T A HE+GHN G EHD EC D + +M P
Sbjct: 178 LTKEADLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYP 220
>pdb|3KMC|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Tartrate-Based Inhibitor
pdb|3KMC|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Tartrate-Based Inhibitor
pdb|3KME|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With Phenyl-
Pyrrolidinyl-Tartrate Inhibitor
pdb|3KME|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With Phenyl-
Pyrrolidinyl-Tartrate Inhibitor
pdb|3L0T|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Hydantoin Inhibitor
pdb|3L0T|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Hydantoin Inhibitor
pdb|3L0V|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With The
First Inhibitor Occupying The S1' Pocket
pdb|3L0V|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With The
First Inhibitor Occupying The S1' Pocket
pdb|3LGP|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Benzimidazolyl- Thienyl-Tartrate Based Inhibitor
pdb|3LGP|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Benzimidazolyl- Thienyl-Tartrate Based Inhibitor
pdb|3LE9|A Chain A, Crystal Structure Of The Catalytic Domain Of Tace With
Indazolinone- Phenyl-Hydantoin Inhibitor
pdb|3LE9|B Chain B, Crystal Structure Of The Catalytic Domain Of Tace With
Indazolinone- Phenyl-Hydantoin Inhibitor
pdb|3LEA|A Chain A, Crystal Structure Of The Catalytic Domain Of Tace With
Isoindolinone- Biphenyl-Hydantoin Inhibitor
pdb|3LEA|B Chain B, Crystal Structure Of The Catalytic Domain Of Tace With
Isoindolinone- Biphenyl-Hydantoin Inhibitor
pdb|3O64|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
2-(2-Aminothiazol- 4-Yl)pyrrolidine-Based Tartrate
Diamides
pdb|3O64|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
2-(2-Aminothiazol- 4-Yl)pyrrolidine-Based Tartrate
Diamides
Length = 270
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 29/103 (28%)
Query: 174 AQLLTGMTFSDGVVGKALKG-----------PICTYEFSGGVNV-------DHKNVVGLV 215
A L T F G +G A G P Y G N+ KN +
Sbjct: 121 AHLFTYQDFDMGTLGLAYGGSPRANSHGGVCPKAYYSPVGKKNIYLNSGLTSTKNYGKTI 180
Query: 216 ATTVA-----HEMGHNLGMEHDT---TECTCPSD---RCIMAP 247
T A HE+GHN G EHD EC D + +M P
Sbjct: 181 LTKEADLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYP 223
>pdb|2DDF|A Chain A, Crystal Structure Of Tace In Complex With Tapi-2
pdb|2DDF|B Chain B, Crystal Structure Of Tace In Complex With Tapi-2
Length = 257
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 29/103 (28%)
Query: 174 AQLLTGMTFSDGVVGKALKG-----------PICTYEFSGGVNV-------DHKNVVGLV 215
A L T F G +G A G P Y G N+ KN +
Sbjct: 118 AHLFTYQDFDMGTLGLAYGGSPRANSHGGVCPKAYYSPVGKKNIYLNSGLTSTKNYGKTI 177
Query: 216 ATTVA-----HEMGHNLGMEHDT---TECTCPSD---RCIMAP 247
T A HE+GHN G EHD EC D + +M P
Sbjct: 178 LTKEADLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYP 220
>pdb|1BKC|E Chain E, Catalytic Domain Of Tnf-Alpha Converting Enzyme (Tace)
Length = 256
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 219 VAHEMGHNLGMEHD---TTECTCPSD---RCIMAP 247
HE+GHN G EHD EC D + +M P
Sbjct: 185 TTHELGHNFGAEHDPDGKAECAPNEDQGGKYVMYP 219
>pdb|2FV5|A Chain A, Crystal Structure Of Tace In Complex With Ik682
pdb|2FV5|B Chain B, Crystal Structure Of Tace In Complex With Ik682
Length = 261
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 29/103 (28%)
Query: 174 AQLLTGMTFSDGVVGKALKG-----------PICTYEFSGGVNV-------DHKNVVGLV 215
A L T F G +G A G P Y G N+ KN +
Sbjct: 120 AHLFTYQDFDMGTLGLAYGGSPRANSHGGVCPKAYYSPVGKKNIYLNSGLTSTKNYGKTI 179
Query: 216 ATTVA-----HEMGHNLGMEHDT---TECTCPSD---RCIMAP 247
T A HE+GHN G EHD EC D + +M P
Sbjct: 180 LTKEADLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYP 222
>pdb|3EDZ|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Hydroxamate Inhibitor
pdb|3EDZ|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Hydroxamate Inhibitor
pdb|3E8R|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Hydroxamate Inhibitor
pdb|3E8R|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Hydroxamate Inhibitor
pdb|3EWJ|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Carboxylate Inhibitor
pdb|3EWJ|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Carboxylate Inhibitor
Length = 271
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 29/103 (28%)
Query: 174 AQLLTGMTFSDGVVGKALKG-----------PICTYEFSGGVNV-------DHKNVVGLV 215
A L T F G +G A G P Y G N+ KN +
Sbjct: 121 AHLFTYQDFDMGTLGLAYGGSPRANSHGGVCPKAYYSPVGKKNIYLNSGLTSTKNYGKTI 180
Query: 216 ATTVA-----HEMGHNLGMEHDT---TECTCPSD---RCIMAP 247
T A HE+GHN G EHD EC D + +M P
Sbjct: 181 LTKEADLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYP 223
>pdb|2OI0|A Chain A, Crystal Structure Analysis 0f The Tnf-A Coverting Enzyme
(Tace) In Complexed With Aryl-Sulfonamide
Length = 266
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 219 VAHEMGHNLGMEHDT---TECTCPSD---RCIMAP 247
HE+GHN G EHD EC D + +M P
Sbjct: 188 TTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYP 222
>pdb|2A8H|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Thiomorpholine Sulfonamide Hydroxamate Inhibitor
pdb|2A8H|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Thiomorpholine Sulfonamide Hydroxamate Inhibitor
Length = 271
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 219 VAHEMGHNLGMEHDT---TECTCPSD---RCIMAP 247
HE+GHN G EHD EC D + +M P
Sbjct: 189 TTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYP 223
>pdb|1ZXC|A Chain A, Crystal Structure Of Catalytic Domain Of Tnf-alpha
Converting Enzyme (tace) With Inhibitor
pdb|1ZXC|B Chain B, Crystal Structure Of Catalytic Domain Of Tnf-alpha
Converting Enzyme (tace) With Inhibitor
Length = 263
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 219 VAHEMGHNLGMEHDT---TECTCPSD---RCIMAP 247
HE+GHN G EHD EC D + +M P
Sbjct: 189 TTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYP 223
>pdb|1BKC|A Chain A, Catalytic Domain Of Tnf-Alpha Converting Enzyme (Tace)
pdb|1BKC|C Chain C, Catalytic Domain Of Tnf-Alpha Converting Enzyme (Tace)
pdb|3CKI|A Chain A, Crystal Structure Of The Tace-N-Timp-3 Complex
Length = 256
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 219 VAHEMGHNLGMEHDT---TECTCPSD---RCIMAP 247
HE+GHN G EHD EC D + +M P
Sbjct: 185 TTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYP 219
>pdb|3B92|A Chain A, Novel Thio-Based Tace Inhibitors Part 2: Rational Design,
Synthesis And Sar Of Thiol-Contaning Aryl Sufones
Length = 259
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 219 VAHEMGHNLGMEHDT---TECTCPSD---RCIMAP 247
HE+GHN G EHD EC D + +M P
Sbjct: 188 TTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYP 222
>pdb|2X7M|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Methanopyrus Kandleri At 1.5 A Resolution
Length = 195
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 215 VATTVAHEMGHNLGMEHDTTECTCPSDRCIMA 246
V + HE+GH G+ H CP C+M+
Sbjct: 139 VVKELTHELGHTFGLGH------CPDRNCVMS 164
>pdb|2I47|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Inhibitor
pdb|2I47|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Inhibitor
pdb|2I47|C Chain C, Crystal Structure Of Catalytic Domain Of Tace With
Inhibitor
pdb|2I47|D Chain D, Crystal Structure Of Catalytic Domain Of Tace With
Inhibitor
pdb|3G42|A Chain A, Crystal Structure Of Tace With Tryptophan Sulfonamide
Derivative Inhibitor
pdb|3G42|B Chain B, Crystal Structure Of Tace With Tryptophan Sulfonamide
Derivative Inhibitor
pdb|3G42|C Chain C, Crystal Structure Of Tace With Tryptophan Sulfonamide
Derivative Inhibitor
pdb|3G42|D Chain D, Crystal Structure Of Tace With Tryptophan Sulfonamide
Derivative Inhibitor
Length = 288
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 219 VAHEMGHNLGMEHDT---TECTCPSDR 242
HE+GHN G EHD EC D+
Sbjct: 192 TTHELGHNFGAEHDPDGLAECAPNEDQ 218
>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
With Magnesium
Length = 167
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 185 GVVGKALKGPICTYEFSGGVNVDHK-----NVVGL-VATTVAHEMGHNLGMEH 231
G++ A P ++G ++ D N G+ + T AHE+GH LG+EH
Sbjct: 79 GILAHAFYPPPAGGNYAGHLHFDDDENWSINGSGIDLITVAAHEIGHLLGIEH 131
>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain
pdb|2XS3|B Chain B, Structure Of Karilysin Catalytic Mmp Domain
Length = 166
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 185 GVVGKALKGPICTYEFSGGVNVDHK-----NVVGL-VATTVAHEMGHNLGMEH 231
G++ A P ++G ++ D N G+ + T AHE+GH LG+EH
Sbjct: 79 GILAHAFYPPPAGGNYAGHLHFDDDENWSINGSGIDLITVAAHEIGHLLGIEH 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,513,671
Number of Sequences: 62578
Number of extensions: 348727
Number of successful extensions: 776
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 65
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)