RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1606
(285 letters)
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex,
metal-binding, zinc-depending, metalloprotease,
metalloproteinase/inhibitor complex; HET: WR2; 1.05A
{Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A
3gbo_A
Length = 202
Score = 251 bits (644), Expect = 8e-85
Identities = 67/197 (34%), Positives = 103/197 (52%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
RY+EL +V D+ ++ +N N + ++ N +N Y +++ L + VW++ D I
Sbjct: 6 RYIELAVVADHGIFTKYNSNLNTIRTRVHEMLNTVNGFYRSVDVHAPLANLEVWSKQDLI 65
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + TL +F +R+ L+ +D+AQLLT + F +G+A G +C S GV
Sbjct: 66 KVQKDSSKTLKSFGEWRERDLLPRISHDHAQLLTAVVFDGNTIGRAYTGGMCDPRHSVGV 125
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
DH VA T+AHE+GHNLG+ HDT C+C + CIMA S V E+S CS
Sbjct: 126 VRDHSKNNLWVAVTMAHELGHNLGIHHDTGSCSCGAKSCIMASVLSKVLSYEFSDCSQNQ 185
Query: 265 LALSFDHGMDYCMRNKP 281
+ C+ NKP
Sbjct: 186 YETYLTNHNPQCILNKP 202
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor
complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9
PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Length = 202
Score = 251 bits (643), Expect = 9e-85
Identities = 69/201 (34%), Positives = 106/201 (52%)
Query: 81 NIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTE 140
N+ RY+ELV+V D+R++ +N + + +I N IN Y LNI ++L + +W+
Sbjct: 2 NLPQRYIELVVVADHRVFMKYNSDLNTIRTRVHEIVNFINGFYRSLNIHVSLTDLEIWSN 61
Query: 141 YDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEF 200
D+I + TL F +R+ L+ +DNAQLLT + + +G A G +C +
Sbjct: 62 EDQINIQSASSDTLNAFAEWRETDLLNRKSHDNAQLLTAIELDEETLGLAPLGTMCDPKL 121
Query: 201 SGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSC 260
S G+ DH + L+ T+AHE+GHNLGMEHD +C + CIM P + E+S
Sbjct: 122 SIGIVQDHSPINLLMGVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTKGRSYEFSDD 181
Query: 261 SLEYLALSFDHGMDYCMRNKP 281
S+ Y C+ NKP
Sbjct: 182 SMHYYERFLKQYKPQCILNKP 202
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin;
1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB:
1bsw_A
Length = 197
Score = 244 bits (626), Expect = 3e-82
Identities = 70/195 (35%), Positives = 100/195 (51%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
RY+E+VIVVD+ + +N +S + ++ N I Y L I I+L G+ +W+ D I
Sbjct: 3 RYMEIVIVVDHSMVKKYNGDSDSIKAWVYEMINTITESYSYLKIDISLSGLEIWSGKDLI 62
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + TL +F +R L+ +DNAQLLT F +G A +C + S GV
Sbjct: 63 DVEASAGNTLKSFGEWRAKDLIHRISHDNAQLLTATDFDGATIGLAYVASMCNPKRSVGV 122
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
DH +V LVA T+AHEM HNLG+ HD C+C CIM+PS S + +S CS
Sbjct: 123 IQDHSSVNRLVAITLAHEMAHNLGVSHDEGSCSCGGKSCIMSPSISDETIKYFSDCSYIQ 182
Query: 265 LALSFDHGMDYCMRN 279
C+ N
Sbjct: 183 CRDYISKENPPCILN 197
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Length = 202
Score = 244 bits (625), Expect = 7e-82
Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 1/197 (0%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
+ L +VVD+ ++ +N ++K + N++ ++++ L + I L G+ +WT D I
Sbjct: 5 VSVTLQLVVDSSMFAKYNGDAKKIVTVLDTRVNIMKSIFKPLLLLITLSGIEMWTSKDLI 64
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
T+ GD+TL+ F +R+ L+ NDNAQL T + F VVG A G +C ++S G+
Sbjct: 65 TVKPAGDLTLSLFADWRQTLLLSRILNDNAQLQTAVDFRGAVVGLAFVGTMCNAKYSAGI 124
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
D + L+A +AHE+GHNLGM HD +C D CIMAPS SS +S+CSL
Sbjct: 125 IQDFSAIPLLMAVVMAHELGHNLGMLHD-DGYSCDCDVCIMAPSLSSDPTKVFSNCSLIL 183
Query: 265 LALSFDHGMDYCMRNKP 281
+ C+ N
Sbjct: 184 YEDFLSNEEPDCIDNAS 200
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase;
1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB:
1kui_A 1kuk_A 1kug_A 1wni_A
Length = 203
Score = 242 bits (619), Expect = 4e-81
Identities = 71/197 (36%), Positives = 104/197 (52%), Gaps = 1/197 (0%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
RY+EL IVVD+ +Y ++ N K + + + + IN + LNI I L + VW+E D I
Sbjct: 8 RYIELAIVVDHGMYTKYSSNFKKIRKRVHQMVSNINEMCRPLNIAITLALLDVWSEKDFI 67
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
T+ + T F +R+ L+ +D+AQLLT F+ +G A G +C ++S V
Sbjct: 68 TVQADAPTTAGLFGDWRERVLLKKKNHDHAQLLTDTNFARNTIGWAYVGRMCDEKYSVAV 127
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
DH + V +VA T+ HE+GHNLGMEHD C D CIM+ S +S CS +Y
Sbjct: 128 VKDHSSKVFMVAVTMTHELGHNLGMEHDDK-DKCKCDTCIMSAVISDKQSKLFSDCSKDY 186
Query: 265 LALSFDHGMDYCMRNKP 281
+ C+ N P
Sbjct: 187 YQTFLTNDNPQCILNAP 203
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG
MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB:
1r54_A*
Length = 214
Score = 242 bits (619), Expect = 7e-81
Identities = 73/207 (35%), Positives = 108/207 (52%), Gaps = 5/207 (2%)
Query: 80 ANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWT 139
A +YLEL IV D+ L+ ++N + + +++N ++ L L+I +AL G+ VWT
Sbjct: 2 ARRTRKYLELYIVADHTLFLTRHRNLQHTKQRLLEVANYVDQLLRTLDIQVALTGLEVWT 61
Query: 140 EYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYE 199
E D + + + TL FL +R+ P+D+AQLLTG F VG A +C E
Sbjct: 62 ERDRSRVTQDANATLWAFLQWRRGLWAQ-RPHDSAQLLTGRAFQGATVGLAPVEGMCRAE 120
Query: 200 FSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTC----PSDRCIMAPSSSSVSPT 255
SGGV+ DH + A T+AHE+GH+LG+ HD C S C+MA ++ P
Sbjct: 121 SSGGVSTDHSELPIGAAATMAHEIGHSLGLSHDPDGCCVEAAAESGGCVMAAATGHPFPR 180
Query: 256 EWSSCSLEYLALSFDHGMDYCMRNKPK 282
+S+CS L F G C+ N P
Sbjct: 181 VFSACSRRQLRAFFRKGGGACLSNAPS 207
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin,
snake venom proteinase; 2.20A {Deinagkistrodon acutus}
SCOP: d.92.1.9
Length = 197
Score = 241 bits (616), Expect = 1e-80
Identities = 73/195 (37%), Positives = 105/195 (53%), Gaps = 2/195 (1%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
+EL ++VD+ +Y +N NS + K N++NA+Y LN+ I L G+ +W+ D I
Sbjct: 5 TSIELFLIVDHSMYAKYNSNSSKITTTLKARVNIMNAIYSSLNLVITLSGIEMWSAADLI 64
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
T+ + TL F S+R+ L+ NDNAQLLT F+ VG A +C ++S G+
Sbjct: 65 TVQSSSRNTLKLFASWRETDLLKRTSNDNAQLLTATNFNGNTVGLAYLKTMCNSKYSVGL 124
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
DH + L+A T+AHE+GHNLGM HD C+C + CIMAP SS +S CS
Sbjct: 125 IQDHSAIPLLMAVTMAHELGHNLGMNHDGAGCSCAT--CIMAPVLSSGPAKSFSDCSKHD 182
Query: 265 LALSFDHGMDYCMRN 279
C+ N
Sbjct: 183 YQSFLTIHKPQCLLN 197
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat,
inflammation, alpha/beta motif, metalloproteinas
allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo
sapiens}
Length = 208
Score = 234 bits (600), Expect = 5e-78
Identities = 76/205 (37%), Positives = 113/205 (55%), Gaps = 8/205 (3%)
Query: 83 KSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYD 142
++RY+EL +VVDN + + + + HR ++ N ++ LY+KLN + LVG+ +W D
Sbjct: 3 ETRYVELYVVVDNAEFQMLGSEAAVRHR-VLEVVNHVDKLYQKLNFRVVLVGLEIWNSQD 61
Query: 143 EITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSG 202
++ + +TL N L+++ + H +DN QL+TG+ F+ VG A +C++ SG
Sbjct: 62 RFHVSPDPSVTLENLLTWQARQRTRRHLHDNVQLITGVDFTGTTVGFARVSAMCSH-SSG 120
Query: 203 GVNVDHKNVVGLVATTVAHEMGHNLGMEHD--TTECTCP----SDRCIMAPSSSSVSPTE 256
VN DH VA T+AHEMGHNLGM+HD C C + RCIMA S S P
Sbjct: 121 AVNQDHSKNPVGVACTMAHEMGHNLGMDHDENVQGCRCQERFEAGRCIMAGSIGSSFPRM 180
Query: 257 WSSCSLEYLALSFDHGMDYCMRNKP 281
+S CS YL + C+ N P
Sbjct: 181 FSDCSQAYLESFLERPQSVCLANAP 205
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 211 bits (539), Expect = 3e-66
Identities = 74/197 (37%), Positives = 109/197 (55%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
+Y++L +V D +Y + +N V DI NVI +Y ++NI +ALVG+ +W+ D+I
Sbjct: 16 KYVKLFLVADYIMYLKYGRNLTAVRTRMYDIVNVITPIYHRMNIHVALVGLEIWSNTDKI 75
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + D+TL F +R L+ +DNAQLLTG+ F+ G G IC +S G+
Sbjct: 76 IVQSSADVTLDLFAKWRATDLLSRKSHDNAQLLTGINFNGPTAGLGYLGGICNTMYSAGI 135
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
DH + LVA +AHEMGHNLGM+HD CTC + C+MA + S + +S CS +
Sbjct: 136 VQDHSKIHHLVAIAMAHEMGHNLGMDHDKDTCTCGTRPCVMAGALSCEASFLFSDCSQKD 195
Query: 265 LALSFDHGMDYCMRNKP 281
M C+ KP
Sbjct: 196 HREFLIKNMPQCILKKP 212
Score = 29.6 bits (66), Expect = 1.1
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 33 IPCRSAIVDLGLNQVDPGLSPDGARCGDGK 62
PC + N D G+ G +C D K
Sbjct: 387 NPCN---IYYSPNDEDKGMVLPGTKCADRK 413
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 206 bits (525), Expect = 4e-64
Identities = 60/197 (30%), Positives = 91/197 (46%), Gaps = 2/197 (1%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
++ELVI+VD+ + N + + +I N N ++ LNI + L+GV W + D I
Sbjct: 11 IFIELVIIVDHSMAKKCNSTA--TNTKIYEIVNSANEIFNPLNIHVTLIGVEFWCDRDLI 68
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + D TL +F +R L+ +DNA L T M F +G +C S G+
Sbjct: 69 NVTSSADETLNSFGEWRASDLMTRKSHDNALLFTDMRFDLNTLGITFLAGMCQAYRSVGI 128
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
+ N A +AHE+ HNLGM HD C C C+M+P S +S+CS+
Sbjct: 129 VQEQGNRNFKTAVIMAHELSHNLGMYHDGKNCICNDSSCVMSPVLSDQPSKLFSNCSIHD 188
Query: 265 LALSFDHGMDYCMRNKP 281
C+ N P
Sbjct: 189 YQRYLTRYKPKCIFNPP 205
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 204 bits (521), Expect = 8e-64
Identities = 66/198 (33%), Positives = 106/198 (53%), Gaps = 1/198 (0%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
+Y+E ++VDNR+Y +N + + ++ N +N + L I IAL+G+ +W+ D+
Sbjct: 9 KYIEFYVIVDNRMYRYYNNDKPAIKIKVYEMINAVNTKFRPLKIHIALIGLEIWSNKDKF 68
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ +TL +F +R+ L+ NDNAQLLTG+ F+ VG+A G +C S +
Sbjct: 69 EVKPAASVTLKSFGEWRETVLLPRKRNDNAQLLTGIDFNGNTVGRAYIGSLCKTNESVAI 128
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
D+ + LVA+T+ HE+GHNLG+ HD C C CIM ++ ++SSCS+
Sbjct: 129 VQDYNRRISLVASTITHELGHNLGIHHDKASCICIPGPCIMLKKRTA-PAFQFSSCSIRE 187
Query: 265 LALSFDHGMDYCMRNKPK 282
C+ NKP
Sbjct: 188 YREYLLRDRPQCILNKPL 205
Score = 28.4 bits (63), Expect = 3.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 42 LGLNQVDPGLSPDGARCGDGK 62
L D ++ G +CGDG
Sbjct: 363 LIPPNPDGIMAEPGTKCGDGM 383
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 203 bits (518), Expect = 3e-63
Identities = 70/198 (35%), Positives = 106/198 (53%), Gaps = 1/198 (0%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
R++ELV+VVD + N + + +I N +N +Y + I +ALVG+ +W+ D+I
Sbjct: 8 RFVELVLVVDKAMVTKNNGDLDKIKTRMYEIVNTVNEIYRYMYIHVALVGLEIWSNEDKI 67
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
T+ TL F +RK L+ +DNAQLLT + D V+G A G +C + S G+
Sbjct: 68 TVKPEAGYTLNAFGEWRKTDLLTRKKHDNAQLLTAIDL-DRVIGLAYVGSMCHPKRSTGI 126
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
D+ + +VA +AHEMGHNLG+ HD+ C+C CIM P S T +S+CS
Sbjct: 127 IQDYSEINLVVAVIMAHEMGHNLGINHDSGYCSCGDYACIMRPEISPEPSTFFSNCSYFE 186
Query: 265 LALSFDHGMDYCMRNKPK 282
+ C+ N+P
Sbjct: 187 CWDFIMNHNPECILNEPL 204
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo
sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Length = 217
Score = 196 bits (499), Expect = 9e-63
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 25/218 (11%)
Query: 83 KSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKL----NIFIALVGVVVW 138
++R +EL++V D + + + + + ++++ N LY +I +A+V VVV
Sbjct: 2 RARQVELLLVADASMARKYGRG---LQHYLLTLASIANRLYSHASIENHIRLAVVKVVVL 58
Query: 139 TEYDE-ITLNVNGDITLTNFLSYRKDRLVLSHPN----DNAQLLTGMTF----SDGVVGK 189
+ D+ + ++ N TL NF ++ L + D A L T S +G
Sbjct: 59 GDKDKSLEVSKNAATTLKNFCKWQHQHNQLGDDHEEHYDAAILFTREDLCGHHSCDTLGM 118
Query: 190 ALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTE-----CTCPSDRCI 244
A G IC+ E S V D A TVAHE+GH LG+ HD ++ D+ +
Sbjct: 119 ADVGTICSPERSCAVIEDDGL---HAAFTVAHEIGHLLGLSHDDSKFCEETFGSTEDKRL 175
Query: 245 MAPSSSSVS-PTEWSSCSLEYLALSFDHGMDYCMRNKP 281
M+ +S+ WS C+ + D G C+ + P
Sbjct: 176 MSSILTSIDASKPWSKCTSATITEFLDDGHGNCLLDLP 213
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 199 bits (508), Expect = 1e-61
Identities = 72/197 (36%), Positives = 113/197 (57%), Gaps = 1/197 (0%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
+Y+E +VVDN +Y + ++ ++ R ++ N +N +Y +LN IAL+G+ +W+ +EI
Sbjct: 14 KYIEFYVVVDNIMYRHYKRDQPVIKRKVYEMINTMNMIYRRLNFHIALIGLEIWSNINEI 73
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + TL F +R+ +L+ NDNAQLLTG+ F+ VG A G IC + S V
Sbjct: 74 NVQSDVRATLNLFGEWREKKLLPRKRNDNAQLLTGIDFNGTPVGLAYIGSICNPKTSAAV 133
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
D+ + +VA T+AHEMGHNLGM HD CTC ++C+M+ + ++SSCS+
Sbjct: 134 VQDYSSRTRMVAITMAHEMGHNLGMNHDRGFCTCGFNKCVMSTRRTK-PAYQFSSCSVRE 192
Query: 265 LALSFDHGMDYCMRNKP 281
C+ NKP
Sbjct: 193 HQRYLLRDRPQCILNKP 209
Score = 29.6 bits (66), Expect = 1.4
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 35 CRSAIVDLGLNQVDPGLSPDGARCGDGK 62
+ + G+ G +CGDG
Sbjct: 381 SMICNCSISPRDPNYGMVEPGTKCGDGM 408
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease,
heparin-binding, metalloproteinase, metzincin,
glycoprotein metal-binding; 2.00A {Homo sapiens} PDB:
2jih_A 3q2g_A* 3q2h_A*
Length = 300
Score = 181 bits (461), Expect = 6e-56
Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 25/217 (11%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNI--FIALVGV---VVWT 139
RY+E ++V D + + + + +V LY+ +I ++LV V V+
Sbjct: 6 RYVETMLVADQSMAEFHGSG---LKHYLLTLFSVAARLYKHPSIRNSVSLVVVKILVIHD 62
Query: 140 EYDEITLNVNGDITLTNFLSYRKDRLVLSHPN----DNAQLLTGMTFSD----GVVGKAL 191
E + N +TL NF +++K S + D A L T +G A
Sbjct: 63 EQKGPEVTSNAALTLRNFCNWQKQHNPPSDRDAEHYDTAILFTRQDLCGSQTCDTLGMAD 122
Query: 192 KGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTEC-----TCPSDRCIMA 246
G +C S V D A T AHE+GH M HD + D +MA
Sbjct: 123 VGTVCDPSRSCSVIEDDGL---QAAFTTAHELGHVFNMPHDDAKQCASLNGVNQDSHMMA 179
Query: 247 PSSSSVS-PTEWSSCSLEYLALSFDHGMDYCMRNKPK 282
S++ WS CS + D+G C+ +KP+
Sbjct: 180 SMLSNLDHSQPWSPCSAYMITSFLDNGHGECLMDKPQ 216
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 179 bits (456), Expect = 3e-53
Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 13/211 (6%)
Query: 79 NANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEK-LNIFIALVGVVV 137
N +++Y+EL+IV D+ ++ + + + K + N+ + +Y+ L I LV +
Sbjct: 1 NVEEETKYIELMIVNDHLMFKKHRLSVVHTNTYAKSVVNMADLIYKDQLKTRIVLVAMET 60
Query: 138 WTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICT 197
W ++ ++ N ITL F+ YR+D + +D L +G F G A G IC+
Sbjct: 61 WATDNKFAISENPLITLREFMKYRRD--FIKEKSDAVHLFSGSQFESSRSGAAYIGGICS 118
Query: 198 YEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTE-------CTCPSDRCIMAPSSS 250
GGVN K L+A T+A + HN+G+ D + C CIM +
Sbjct: 119 LLKGGGVNEFGKT--DLMAVTLAQSLAHNIGIISDKRKLASGECKCEDTWSGCIMGDTGY 176
Query: 251 SVSPTEWSSCSLEYLALSFDHGMDYCMRNKP 281
P +++ C++E + G C+ NKP
Sbjct: 177 Y-LPKKFTQCNIEEYHDFLNSGGGACLFNKP 206
Score = 42.1 bits (98), Expect = 1e-04
Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 1 MLHCQHLSEKLEYGIETVAILSHSFLNPGGFIIPCRSAIVDLGLNQVDPGLSPDGARCGD 60
L C ++ G I S + G + C V L VD G DG CG
Sbjct: 370 YLLCTNIGNIPRLGELDGEITSTLVVQQGR-TLNCSGGHVKLE-EDVDLGYVEDGTPCGP 427
Query: 61 GKT 63
Sbjct: 428 QMM 430
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of
basic residues, extracellular matrix, glycoprotein,
hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens}
PDB: 3b2z_A
Length = 316
Score = 173 bits (439), Expect = 2e-52
Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 26/220 (11%)
Query: 83 KSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIF----IALVGVVVW 138
SR++E ++V D+++ + R+ + ++ +I + + +V+
Sbjct: 4 LSRFVETLVVADDKMAAFHGAG---LKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVIL 60
Query: 139 TE-YDEITLNVNGDITLTNFLSYRKDRLVLSHPN----DNAQLLTGMTFSD----GVVGK 189
+ + + TL +F ++++ + D A L T +G
Sbjct: 61 GSGEEGPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGM 120
Query: 190 ALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTC------PSDRC 243
A G +C S + D A T AH++GH M HD ++ + R
Sbjct: 121 ADVGTVCDPARSCAIVEDDGL---QSAFTAAHQLGHVFNMLHDNSKPCISLNGPLSTSRH 177
Query: 244 IMAPSSSSVSPT-EWSSCSLEYLALSFDHGMDYCMRNKPK 282
+MAP + V P WS CS ++ D+G +C+ +KP+
Sbjct: 178 VMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHCLLDKPE 217
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 163 bits (414), Expect = 3e-48
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 25/219 (11%)
Query: 83 KSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKL----NIFIALVGVVVW 138
++R +EL++V D + L+ + + + ++++ N LY +I +A+V VVV
Sbjct: 4 RARQVELLLVADASMARLYGRG---LQHYLLTLASIANRLYSHASIENHIRLAVVKVVVL 60
Query: 139 TEYDE-ITLNVNGDITLTNFLSYRKDRLVLSHPN----DNAQLLTGMTF----SDGVVGK 189
+ D+ + ++ N TL NF ++ L + D A L T S +G
Sbjct: 61 GDKDKSLEVSKNAATTLKNFCKWQHQHNQLGDDHEEHYDAAILFTREDLCGHHSCDTLGM 120
Query: 190 ALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTEC-----TCPSDRCI 244
A G IC+ E S V D A TVAHE+GH LG+ HD ++ D+ +
Sbjct: 121 ADVGTICSPERSCAVIEDDGL---HAAFTVAHEIGHLLGLSHDDSKFCEETFGSTEDKRL 177
Query: 245 MAPSSSSVS-PTEWSSCSLEYLALSFDHGMDYCMRNKPK 282
M+ +S+ WS C+ + D G C+ + P+
Sbjct: 178 MSSILTSIDASKPWSKCTSATITEFLDDGHGNCLLDLPR 216
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A
{Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Length = 288
Score = 153 bits (387), Expect = 3e-45
Identities = 38/264 (14%), Positives = 74/264 (28%), Gaps = 57/264 (21%)
Query: 74 IRGPYNANIKSRYLELVIVVDNRLYNLF-NKNSKLVHRHCKDISNVINALYEKL------ 126
++ + + +L++V D+R Y + ++ + ++ +Y
Sbjct: 1 VKRRADPDPMKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAWDNAG 60
Query: 127 --NIFIALVGVVVWTEYDEIT-----LNVNGDITLTNFLSYRKDRLVLSHPNDN------ 173
I + + + E+ N+ ++ L+ D
Sbjct: 61 FKGYGIQIEQIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASK 120
Query: 174 ---AQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKN-------------------- 210
A L T F G +G A G GGV
Sbjct: 121 VCLAHLFTYQDFDMGTLGLAYVGSPRA-NSHGGVCPKAYYSPVGKKNIYLNSGLTSTKNY 179
Query: 211 ----VVGLVATTVAHEMGHNLGMEHDTTECTC------PSDRCIMAPSSSSVS---PTEW 257
+ HE+GHN G EHD + +M P + S +
Sbjct: 180 GKTILTKEADLVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMF 239
Query: 258 SSCSLEYLALSFDHGMDYCMRNKP 281
S CS + + + + C + +
Sbjct: 240 SQCSKQSIYKTIESKAQECFQERS 263
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A*
3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A*
3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A*
3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Length = 257
Score = 137 bits (345), Expect = 3e-39
Identities = 40/251 (15%), Positives = 75/251 (29%), Gaps = 55/251 (21%)
Query: 85 RYLELVIVVDNRLYNLF-NKNSKLVHRHCKDISNVINALYEKL--------NIFIALVGV 135
+L++V D+R Y + ++ + ++ +Y I + +
Sbjct: 6 NTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAWDNAGFKGYGIQIEQI 65
Query: 136 VVWTEYDEITLNVNGDITLTNFLSYRKDRLVLSH--------------PNDNAQLLTGMT 181
+ E+ ++ + KD + A L T
Sbjct: 66 RILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQD 125
Query: 182 FSDGVVGKALKGP--------ICTYEFSGGV---------------NVDHKNVVGLVATT 218
F G +G A G +C + V N +
Sbjct: 126 FDMGTLGLAYGGSPRANSHGGVCPKAYYSPVGKKNIYLNSGLTSTKNYGKTILTKEADLV 185
Query: 219 VAHEMGHNLGMEHDTT---ECTCPSD---RCIMAPSSSS---VSPTEWSSCSLEYLALSF 269
HE+GHN G EHD EC D + +M P + S + +S CS + + +
Sbjct: 186 TTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFSQCSKQSIYKTI 245
Query: 270 DHGMDYCMRNK 280
+ C + +
Sbjct: 246 ESKAQECFQER 256
>3p24_A BFT-3; metzincins, metalloendopeptidase, hydrolase; HET: PG4; 1.80A
{Bacteroides fragilis}
Length = 397
Score = 56.9 bits (136), Expect = 2e-09
Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 8/152 (5%)
Query: 83 KSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYD 142
+ + + ++ + +N N+ S + + V L +N+ L
Sbjct: 216 EPKTVYVICLRENGSTVYPNEVSAQMQDAANSVYAVHG-LKRYVNLHFVLYTTEYACPSG 274
Query: 143 EITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQ-LLTGMTFSDGVVGKALKGPICTYEFS 201
N D L F + K +D L+ T+ + ++G + S
Sbjct: 275 ------NADEGLDGFTASLKANPKAEGYDDQIYFLIRWGTWDNNILGISWLNSYNVNTAS 328
Query: 202 GGVNVDHKNVVGLVATTVAHEMGHNLGMEHDT 233
+ +AHE+GH LG H
Sbjct: 329 DFKASGMSTTQLMYPGVMAHELGHILGANHAD 360
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 3e-06
Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 57/224 (25%)
Query: 36 RSAIVDLGLNQVDPGLSPDGARCGDGKT--KRDTVSKHDEIRGPYNANI------KSRYL 87
R A+++L + + DG G GKT D + I
Sbjct: 141 RQALLEL---RPAKNVLIDGVL-GSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSP 195
Query: 88 ELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFI-------ALVGVV--VW 138
E V+ + +L + N H +I I+++ +L + L+ V+ V
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQ 254
Query: 139 TEYDEI---------TLNVNGDITLTNFLS-YRKDRLVLSH------PNDNAQLL---TG 179
+ L +T+FLS + L H P++ LL
Sbjct: 255 NA--KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 180 MTFSD-------------GVVGKALKGPICTYEFSGGVNVDHKN 210
D ++ ++++ + T++ VN D
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Score = 30.6 bits (68), Expect = 0.76
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 25/83 (30%)
Query: 109 HRHCKDISNVI----NAL--------YEKLNIF-----I-ALVGVVVWTEYDEITLNVNG 150
H +C ++ +I N L +++L++F I ++ ++W + +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD----- 403
Query: 151 DITLTNFLSYRKDRLVLSHPNDN 173
+ + N L K LV P ++
Sbjct: 404 VMVVVNKL--HKYSLVEKQPKES 424
Score = 30.2 bits (67), Expect = 0.86
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 36/103 (34%)
Query: 37 SAIVDLGLNQVDPGLSPDGARCGDGKTKRDTVSKHDEIRG--------PYNANIKSRYLE 88
+ I++ LN ++P E R P +A+I + L
Sbjct: 356 TTIIESSLNVLEP----------------------AEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 89 LV-----IVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKL 126
L+ + N +K S LV + K+ + I ++Y +L
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLEL 435
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.50A {Methanopyrus kandleri}
Length = 195
Score = 45.8 bits (108), Expect = 4e-06
Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 16/142 (11%)
Query: 118 VINALYEKLNIFIALVGVVVWTEYDEITLNVNG-DITLTNFLSYRKDRLVLSHPNDNAQL 176
+++++ ++ ++ V + L + +L+ + + ++
Sbjct: 34 MLSSIVDRFEEHVSEYLGEVKVKKKRAKLPEHAYSKVRGQYLARALLDTLRGMKGEYDRV 93
Query: 177 LTGMTFSDG-------VVGKA-LKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLG 228
L G+T D V G+A G + ++ D + + V + HE+GH G
Sbjct: 94 L-GLTSEDLYAPGLNFVFGQARCPGREAVVSVARLLDPDPELYLERVVKELTHELGHTFG 152
Query: 229 MEHDTTECTCPSDRCIMAPSSS 250
+ H CP C+M+ SSS
Sbjct: 153 LGH------CPDRNCVMSFSSS 168
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A
Length = 163
Score = 40.3 bits (94), Expect = 1e-04
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 186 VVGKA-LKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCI 244
V G+A L G D + V HE+GH LG++H C + C+
Sbjct: 84 VFGEAELGGARAVLSVFRLTTADSELYRERVVKEAVHEIGHVLGLKH------CS-NNCV 136
Query: 245 MAPSSS 250
M S+S
Sbjct: 137 MRFSNS 142
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, MUR16; 2.00A {Methanocorpusculum labreanum}
Length = 210
Score = 39.4 bits (91), Expect = 5e-04
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 215 VATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSS 250
+ AHE+GH G+ H C + CIM +
Sbjct: 143 IVKEGAHEIGHLFGLGH------CDNPGCIMYCPRN 172
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor,
metalloprotease, dependent, peptidase; 1.70A {Tannerella
forsythia} PDB: 2xs3_A
Length = 167
Score = 33.2 bits (75), Expect = 0.051
Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 18/124 (14%)
Query: 137 VWTEYDEITLNV-----NGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKAL 191
+W++ ++ DI + D +P D + F G
Sbjct: 39 LWSDKSTLSFIQVYNPNQADIKIKWEKGNHGD----GYPFDGNTGILAHAFYPPPAGGNY 94
Query: 192 KGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSS 251
G + F N + T AHE+GH LG+EH +M P +
Sbjct: 95 AGHLH---FDDDENWSINGSGIDLITVAAHEIGHLLGIEHSNVS------SALMYPYYTG 145
Query: 252 VSPT 255
+
Sbjct: 146 IKRQ 149
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A*
1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Length = 174
Score = 32.1 bits (72), Expect = 0.13
Identities = 18/123 (14%), Positives = 34/123 (27%), Gaps = 13/123 (10%)
Query: 137 VWTEYDEITLN-VNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPI 195
+W + + V R H + G T + G
Sbjct: 42 MWGKEIPLHFRKVVWGTADIMIGFARGA-----HGDSYPFDGPGNTLAHAFAPGTGLGGD 96
Query: 196 CTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPT 255
++ + + HE+GH+LGM H + +M P+ + P
Sbjct: 97 AHFDEDERWTDGSSLGINFL-YAATHELGHSLGMGHSSDPNA------VMYPTYGNGDPQ 149
Query: 256 EWS 258
+
Sbjct: 150 NFK 152
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein,
zincin-like fold, conserved matrix metalloprotease
motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP:
d.92.1.17
Length = 114
Score = 31.2 bits (71), Expect = 0.13
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 207 DHKNVVGLVATTVAHEMGHNLGMEHDT 233
V+ V TV HE+ H+ G++ +
Sbjct: 82 TESEVIDEVRKTVVHEIAHHFGIDDER 108
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics,
structural proteomics in europe, spine, spine-2,
spine2-complexes, hydrolase; HET: NGH; NMR {Homo
sapiens}
Length = 160
Score = 31.3 bits (70), Expect = 0.22
Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 20/126 (15%)
Query: 137 VWTEYDEIT----LNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALK 192
W+ ++ + DI ++ D S+P D + F+ G
Sbjct: 36 AWSSAVPLSFVRINSGEADIMISFENGDHGD----SYPFDGPRGTLAHAFAPGEGLG--- 88
Query: 193 GPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSV 252
F + T AHE GH LG+ H T +M P+
Sbjct: 89 ---GDTHFDNAEKWTMGTNGFNLFTVAAHEFGHALGLAHSTDPSA------LMYPTYKYK 139
Query: 253 SPTEWS 258
+P +
Sbjct: 140 NPYGFH 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.38
Identities = 29/152 (19%), Positives = 41/152 (26%), Gaps = 63/152 (41%)
Query: 122 LYEKLNIFIALVGVVVWTEYDEITLNVNG----DITLTN-------FLSYRKDRLVLSHP 170
LY+ VW D + G DI + N F + R+
Sbjct: 1635 LYKTSKAAQD-----VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI----- 1684
Query: 171 NDNAQLLTGMTFSDGV-----VGKALKGPICTYEFSG--GVNVDHKNVVGLVAT--T--- 218
+N + T DG + K + +Y F G+ L AT T
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL---------LSATQFTQPA 1735
Query: 219 -VAHEM-------------------GHNLGME 230
E GH+LG E
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLG-E 1766
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease,
inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP:
d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A
1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A*
1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A*
1ciz_A* ...
Length = 173
Score = 29.8 bits (66), Expect = 0.57
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 188 GKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAP 247
G + G F + AHE+GH+LG+ H +M P
Sbjct: 89 GPGINGDAH---FDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEA------LMYP 139
Query: 248 SSSSVSPT 255
S++
Sbjct: 140 LYHSLTDL 147
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen
degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2
d.92.1.11
Length = 255
Score = 30.2 bits (67), Expect = 0.60
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 217 TTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPT 255
AHE+GH+LG+ H +M P S++
Sbjct: 197 LVAAHEIGHSLGLFHSANTEA------LMYPLYHSLTDL 229
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET:
CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Length = 165
Score = 29.4 bits (65), Expect = 0.76
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 169 HPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLG 228
H ++ G + K + +++ + L+ AHE GH LG
Sbjct: 68 HGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTDLL-QVAAHEFGHVLG 126
Query: 229 MEHDTTECTCPSDRCIMAPSSSSVSPTE 256
++H T +M+P + P
Sbjct: 127 LQHTTAAKA------LMSPFYTFRYPLS 148
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type -
matrix metalloproteinase, batimastat, hydroxamate
inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo
sapiens} SCOP: d.92.1.11
Length = 169
Score = 29.5 bits (65), Expect = 0.83
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 218 TVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWS 258
HE+GH LG+EH IMAP + +
Sbjct: 120 VAVHELGHALGLEHSNDP------TAIMAPFYQYMETDNFK 154
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite,
structural proteomics in europe, spine, structural
genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens}
SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Length = 450
Score = 30.2 bits (67), Expect = 0.85
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 217 TTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEYLALSFDHGMDYC 276
AHE+GH+LG+ H +M PS + + + ++ + + +
Sbjct: 195 RVAAHELGHSLGLSHS------TDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPV 248
Query: 277 MRNKPKAC 284
P+
Sbjct: 249 QPIGPQTP 256
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase,
hydrolase; 1.00A {Streptomyces caespitosus} SCOP:
d.92.1.1 PDB: 1kuh_A
Length = 132
Score = 29.0 bits (64), Expect = 0.86
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 201 SGGVNVDHKNVVGLVATTV-AHEMGHNLGM-EHDTTECTCPSDRCIMAPSSSSVSPTEWS 258
G + +D++ +T V AHE GH LG+ +H C+ +M+ S T
Sbjct: 62 RGYIFLDYQQNQQYDSTRVTAHETGHVLGLPDHYQGPCS-----ELMSGGGPGPSCTNPY 116
Query: 259 SCSLE 263
+ E
Sbjct: 117 PNAQE 121
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo
sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A*
2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A*
3shi_A
Length = 168
Score = 29.3 bits (65), Expect = 0.95
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 217 TTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTE 256
AHE+GH+LG+ H T +M PS + +
Sbjct: 113 RVAAHELGHSLGLSHSTDIGA------LMYPSYTFSGDVQ 146
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex,
hydrolyse, matrix metalloproteinase, gelatinase A,
hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens}
SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB:
1ks0_A 1cxw_A
Length = 421
Score = 29.9 bits (66), Expect = 0.96
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 217 TTVAHEMGHNLGMEHDTTECTCPSDRCIMAP 247
AH+ GH +G+EH +MAP
Sbjct: 368 LVAAHQFGHAMGLEHSQDP------GALMAP 392
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A
{Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB:
1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Length = 479
Score = 29.5 bits (65), Expect = 1.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 218 TVAHEMGHNLGMEH 231
T HE+GH LG+ H
Sbjct: 185 TFTHEIGHALGLAH 198
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor
complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Length = 167
Score = 28.5 bits (63), Expect = 1.5
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 217 TTVAHEMGHNLGMEH 231
AH GH +G+EH
Sbjct: 116 LVAAHAFGHAMGLEH 130
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo
sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A*
3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A*
3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A*
3kec_A* 2d1n_A* 1fls_A* ...
Length = 168
Score = 28.6 bits (63), Expect = 1.7
Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 20/115 (17%)
Query: 137 VWTEYDEITLNV----NGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALK 192
VW++ + DI ++ + D +P D L F G
Sbjct: 41 VWSDVTPLNFTRLHDGIADIMISFGIKEHGD----FYPFDGPSGLLAHAFPPG---PNYG 93
Query: 193 GPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAP 247
G F + + AHE GH+LG++H M P
Sbjct: 94 GDAH---FDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSKDPGAL------MFP 139
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on
PAIR of basic residue disulfide bond, membrane,
metal-binding; 2.05A {Homo sapiens} PDB: 1bqq_M 1buv_M
Length = 181
Score = 28.3 bits (62), Expect = 2.0
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 218 TVAHEMGHNLGMEHDTTECTCPSDR-CIMAPSSSSVSP 254
HE+GH LG+EH SD IMAP +
Sbjct: 125 VAVHELGHALGLEH-------SSDPSAIMAPFYQWMDT 155
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12,
complex (elastase inhibitor), acetohydroxamic acid,
hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB:
1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A
3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A*
3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Length = 159
Score = 27.8 bits (61), Expect = 2.5
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 217 TTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWS 258
T HE+GH+LG+ H + +M P+ V +
Sbjct: 110 LTAVHEIGHSLGLGHSSDPKA------VMFPTYKYVDINTFR 145
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP:
b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A
1om8_A 1omj_A 1h71_P
Length = 463
Score = 28.7 bits (63), Expect = 2.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 218 TVAHEMGHNLGMEH 231
T+ HE+GH LG+ H
Sbjct: 166 TLTHEIGHTLGLSH 179
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 28.1 bits (61), Expect = 4.1
Identities = 24/175 (13%), Positives = 50/175 (28%), Gaps = 15/175 (8%)
Query: 11 LEYGIETVAILSHSFLNPGGFIIPCR-----SAIVDLGL-NQVDPGLSPDGARCGDGKTK 64
FL P IP + I+ + + P +R +
Sbjct: 509 DNELSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGR 568
Query: 65 RDTVSKHDEIR-GPYNANIKSRYLELVIVVDNRLYNLFNKNSKLVHR-HCKDISNVINAL 122
+ DE+ Y ++ + VV Y + +K V + N N
Sbjct: 569 GEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVFTFEHPNFMNSSNER 628
Query: 123 YEKLNIFIA----LVGVVVWTE---YDEITLNVNGDITLTNFLSYRKDRLVLSHP 170
+ + + L+G + + Y + L++ +S+ + L
Sbjct: 629 SDSIEFVMDRNADLMGFAGYFDLQLYKTVMLSIEPSTHTPGMVSWFPAVIPLRDQ 683
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV
collagenase) (92 kDa gelatinase)...; S1-prime pocket,
hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A
{Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A*
2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Length = 159
Score = 27.1 bits (59), Expect = 4.4
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 218 TVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSP 254
AH+ GH LG++H + +M P
Sbjct: 114 VAAHQFGHALGLDHSSVP------EALMYPMYRFTEG 144
>1sat_A Serratia protease; parallel beta helix, parallel beta roll,
hydrolase (serine protease); 1.75A {Serratia marcescens}
SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Length = 471
Score = 27.6 bits (60), Expect = 5.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 218 TVAHEMGHNLGMEH 231
T HE+GH LG+ H
Sbjct: 173 TFTHEIGHALGLSH 186
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 27.6 bits (60), Expect = 5.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 217 TTVAHEMGHNLGMEH 231
T HE+GH+LG+ H
Sbjct: 109 LTAVHEIGHSLGLGH 123
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex
(metalloprotease/inhibitor); HET: BSI; 1.20A {Homo
sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A
1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A*
3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A
1a86_A* 1jh1_A* 1a85_A ...
Length = 163
Score = 26.7 bits (58), Expect = 6.8
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 217 TTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPT 255
AHE GH+LG+ H + +M P+ + +
Sbjct: 114 LVAAHEFGHSLGLAHSSDPGA------LMYPNYAFRETS 146
>4fca_A Conserved domain protein; structural genomics, the center for
structural genomics of I diseases, csgid, niaid; 2.06A
{Bacillus anthracis}
Length = 525
Score = 27.2 bits (59), Expect = 7.3
Identities = 13/106 (12%), Positives = 28/106 (26%), Gaps = 12/106 (11%)
Query: 137 VWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPIC 196
+ ++DEI + L+ + ++ S ++
Sbjct: 176 LLKKHDEIINIEHKMSGLSKDGAGVANQGKHSIHFVEDWYTDDYMYATY--------YRT 227
Query: 197 TYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGME----HDTTECTC 238
Y +V + + HE+GH + E T
Sbjct: 228 AYSKGNLESVLNLEELTNDGWGPWHEVGHQHQQDTWLWDGLGEVTV 273
>3ujz_A Metalloprotease STCE; mucin-type glycoprotein, hydrolase; 2.50A
{Escherichia coli}
Length = 869
Score = 27.1 bits (59), Expect = 8.6
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 19/98 (19%)
Query: 149 NGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGV-------VGKALKGPICTYEFS 201
NG + R + ++SH DNA G+ + G+ V L ++
Sbjct: 334 NGGWHSGT-MRQRIGKELVSHGIDNA--NYGLNSTAGLGENSHPYVVAQLAAHNSRGNYA 390
Query: 202 GGVNVDHKNVVGLVATTV--------AHEMGHNLGMEH 231
G+ H G T+ +H++GHN G+ H
Sbjct: 391 NGI-QVHGGSGGGGIVTLDSTLGNEFSHDVGHNYGLGH 427
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 27.0 bits (60), Expect = 8.8
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 215 VATTVAHEMGH 225
+ TVAHE+ H
Sbjct: 302 ITMTVAHELAH 312
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 27.1 bits (60), Expect = 9.4
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 215 VATTVAHEMGH 225
V +AHE+ H
Sbjct: 364 VTRVIAHELAH 374
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative
splicing, calcium, chondrogenesis, cleavage on PAIR of
basic residues, cytokine; 1.25A {Homo sapiens} PDB:
3edg_A 3edi_A
Length = 201
Score = 26.3 bits (58), Expect = 9.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 218 TVAHEMGHNLGMEH 231
V HE+GH +G H
Sbjct: 90 IVVHELGHVVGFWH 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,441,181
Number of extensions: 260678
Number of successful extensions: 630
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 67
Length of query: 285
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 192
Effective length of database: 4,105,140
Effective search space: 788186880
Effective search space used: 788186880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)