RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1606
(285 letters)
>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western
diamonback rattlesnake (Crotalus atrox), atrolysin C
[TaxId: 8730]}
Length = 200
Score = 180 bits (458), Expect = 2e-57
Identities = 68/197 (34%), Positives = 104/197 (52%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
RY+ELV+V D+R++ +N + + +I N IN Y LNI ++L + +W+ D+I
Sbjct: 4 RYIELVVVADHRVFMKYNSDLNTIRTRVHEIVNFINGFYRSLNIHVSLTDLEIWSNEDQI 63
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ TL F +R+ L+ +DNAQLLT + + +G A G +C + S G+
Sbjct: 64 NIQSASSDTLNAFAEWRETDLLNRKSHDNAQLLTAIELDEETLGLAPLGTMCDPKLSIGI 123
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
DH + L+ T+AHE+GHNLGMEHD +C + CIM P + E+S S+ Y
Sbjct: 124 VQDHSPINLLMGVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTKGRSYEFSDDSMHY 183
Query: 265 LALSFDHGMDYCMRNKP 281
C+ NKP
Sbjct: 184 YERFLKQYKPQCILNKP 200
>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo
(Bothrops asper), bap1 [TaxId: 8722]}
Length = 202
Score = 178 bits (451), Expect = 3e-56
Identities = 67/197 (34%), Positives = 104/197 (52%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
RY+EL +V D+ ++ +N N + ++ N +N Y +++ L + VW++ D I
Sbjct: 6 RYIELAVVADHGIFTKYNSNLNTIRTRVHEMLNTVNGFYRSVDVHAPLANLEVWSKQDLI 65
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + TL +F +R+ L+ +D+AQLLT + F +G+A G +C S GV
Sbjct: 66 KVQKDSSKTLKSFGEWRERDLLPRISHDHAQLLTAVVFDGNTIGRAYTGGMCDPRHSVGV 125
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
DH VA T+AHE+GHNLG++HDT C+C + CIMA S V E+S CS
Sbjct: 126 VRDHSKNNLWVAVTMAHELGHNLGIDHDTGSCSCGAKSCIMASVLSKVLSYEFSDCSQNQ 185
Query: 265 LALSFDHGMDYCMRNKP 281
+ C+ NKP
Sbjct: 186 YETYLTNHNPQCILNKP 202
>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 176 bits (446), Expect = 2e-55
Identities = 72/201 (35%), Positives = 107/201 (53%), Gaps = 5/201 (2%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
+YLEL IV D+ L+ ++N + + +++N ++ L L+I +AL G+ VWTE D
Sbjct: 3 KYLELYIVADHTLFLTRHRNLQHTKQRLLEVANYVDQLLRTLDIQVALTGLEVWTERDRS 62
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
+ + + TL FL +R+ P+D+AQLLTG F VG A +C E SGGV
Sbjct: 63 RVTQDANATLWAFLQWRRGLWA-QRPHDSAQLLTGRAFQGATVGLAPVEGMCRAESSGGV 121
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTC----PSDRCIMAPSSSSVSPTEWSSC 260
+ DH + A T+AHE+GH+LG+ HD C S C+MA ++ P +S+C
Sbjct: 122 STDHSELPIGAAATMAHEIGHSLGLSHDPDGCCVEAAAESGGCVMAAATGHPFPRVFSAC 181
Query: 261 SLEYLALSFDHGMDYCMRNKP 281
S L F G C+ N P
Sbjct: 182 SRRQLRAFFRKGGGACLSNAP 202
>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake
(Agkistrodon acutus), acutolysin A [TaxId: 36307]}
Length = 197
Score = 174 bits (442), Expect = 6e-55
Identities = 70/196 (35%), Positives = 100/196 (51%)
Query: 84 SRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDE 143
RY+E+VIVVD+ + +N +S + ++ N I Y L I I+L G+ +W+ D
Sbjct: 2 QRYMEIVIVVDHSMVKKYNGDSDSIKAWVYEMINTITESYSYLKIDISLSGLEIWSGKDL 61
Query: 144 ITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGG 203
I + + TL +F +R L+ +DNAQLLT F +G A +C + S G
Sbjct: 62 IDVEASAGNTLKSFGEWRAKDLIHRISHDNAQLLTATDFDGATIGLAYVASMCNPKRSVG 121
Query: 204 VNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLE 263
V DH +V LVA T+AHEM HNLG+ HD C+C CIM+PS S + +S CS
Sbjct: 122 VIQDHSSVNRLVAITLAHEMAHNLGVSHDEGSCSCGGKSCIMSPSISDETIKYFSDCSYI 181
Query: 264 YLALSFDHGMDYCMRN 279
C+ N
Sbjct: 182 QCRDYIAKENPPCILN 197
>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese
five-pace snake (Agkistrodon acutus), acutolysin C
[TaxId: 36307]}
Length = 197
Score = 173 bits (440), Expect = 1e-54
Identities = 73/195 (37%), Positives = 105/195 (53%), Gaps = 2/195 (1%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
+EL ++VD+ +Y +N NS + K N++NA+Y LN+ I L G+ +W+ D I
Sbjct: 5 TSIELFLIVDHSMYAKYNSNSSKITTTLKARVNIMNAIYSSLNLVITLSGIEMWSAADLI 64
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
T+ + TL F S+R+ L+ NDNAQLLT F+ VG A +C ++S G+
Sbjct: 65 TVQSSSRNTLKLFASWRETDLLKRTSNDNAQLLTATNFNGNTVGLAYLKTMCNSKYSVGL 124
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
DH + L+A T+AHE+GHNLGM HD C+C + CIMAP SS +S CS
Sbjct: 125 IQDHSAIPLLMAVTMAHELGHNLGMNHDGAGCSCAT--CIMAPVLSSGPAKSFSDCSKHD 182
Query: 265 LALSFDHGMDYCMRN 279
C+ N
Sbjct: 183 YQSFLTIHKPQCLLN 197
>d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu
(Trimeresurus mucrosquamatus), atrolysin E [TaxId:
103944]}
Length = 201
Score = 169 bits (428), Expect = 7e-53
Identities = 71/197 (36%), Positives = 104/197 (52%), Gaps = 1/197 (0%)
Query: 85 RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
RY+EL IVVD+ +Y ++ N K + + + + IN + LNI I L + VW+E D I
Sbjct: 6 RYIELAIVVDHGMYTKYSSNFKKIRKRVHQMVSNINEMCRPLNIAITLALLDVWSEKDFI 65
Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
T+ + T F +R+ L+ +D+AQLLT F+ +G A G +C ++S V
Sbjct: 66 TVQADAPTTAGLFGDWRERVLLKKKNHDHAQLLTDTNFARNTIGWAYVGRMCDEKYSVAV 125
Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
DH + V +VA T+ HE+GHNLGMEHD C D CIM+ S +S CS +Y
Sbjct: 126 VKDHSSKVFMVAVTMTHELGHNLGMEHDDK-DKCKCDTCIMSAVISDKQSKLFSDCSKDY 184
Query: 265 LALSFDHGMDYCMRNKP 281
+ C+ N P
Sbjct: 185 YQTFLTNDNPQCILNAP 201
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 254
Score = 118 bits (297), Expect = 8e-33
Identities = 36/253 (14%), Positives = 70/253 (27%), Gaps = 55/253 (21%)
Query: 83 KSRYLELVIVVDNRLYNLF-NKNSKLVHRHCKDISNVINALYEKL--------NIFIALV 133
+L++V D+R Y + ++ + ++ +Y I +
Sbjct: 2 MKNTCKLLVVADHRFYRYMGRGEESTTTNYLIELIDRVDDIYRNTAWDNAGFKGYGIQIE 61
Query: 134 GVVVWTEYDEITLNVNGDITLTNFLSYRK--------------DRLVLSHPNDNAQLLTG 179
+ + E+ ++ + K D + A L T
Sbjct: 62 QIRILKSPQEVKPGEKHYNMAKSYPNEEKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTY 121
Query: 180 MTFSDGVVGKA--------LKGPICTYEFSGGVNVD---------------HKNVVGLVA 216
F G +G A G +C + V +
Sbjct: 122 QDFDMGTLGLAYVGSPRANSHGGVCPKAYYSPVGKKNIYLNSGLTSTKNYGKTILTKEAD 181
Query: 217 TTVAHEMGHNLGMEHDTTECT------CPSDRCIMAPSSSSVS---PTEWSSCSLEYLAL 267
HE+GHN G EHD + +M P + S +S CS + +
Sbjct: 182 LVTTHELGHNFGAEHDPDGLAECAPNEDQGGKYVMYPIAVSGDHENNKMFSQCSKQSIYK 241
Query: 268 SFDHGMDYCMRNK 280
+ + C + +
Sbjct: 242 TIESKAQECFQER 254
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens),
fibroblast [TaxId: 9606]}
Length = 168
Score = 31.4 bits (70), Expect = 0.060
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 12/119 (10%)
Query: 137 VWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPIC 196
VW E +T + + +S+ +P D + ++ G G
Sbjct: 41 VWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPG------PGING 94
Query: 197 TYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPT 255
F + AHE+GH+LG+ H +M P S++
Sbjct: 95 DAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEA------LMYPLYHSLTDL 147
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 157
Score = 30.6 bits (68), Expect = 0.10
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 137 VWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPIC 196
+W+ +T + +S+ + + P D F G + G
Sbjct: 34 LWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGP---GIGGDAH 90
Query: 197 TYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTE 256
E N + + VA AHE+GH+LG+ H T +M PS + +
Sbjct: 91 FDEDERWTNNFREYNLHRVA---AHELGHSLGLSHSTDIGA------LMYPSYTFSGDVQ 141
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 30.3 bits (67), Expect = 0.16
Identities = 21/122 (17%), Positives = 31/122 (25%), Gaps = 15/122 (12%)
Query: 137 VWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPIC 196
+W+ +T + + +P D L F G G
Sbjct: 38 LWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPG------PGIQG 91
Query: 197 TYEFSGGVNVDHKNVVGLVATTVA-HEMGHNLGMEHDTTECTCPSDR-CIMAPSSSSVSP 254
F G VA H+ GH LG++H S +M P
Sbjct: 92 DAHFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDH-------SSVPEALMYPMYRFTEG 144
Query: 255 TE 256
Sbjct: 145 PP 146
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 30.0 bits (66), Expect = 0.21
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 217 TTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWS 258
HE+GH LG+EH IMAP + +
Sbjct: 119 LVAVHELGHALGLEHSNDP------TAIMAPFYQYMETDNFK 154
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 29.4 bits (65), Expect = 0.31
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 217 TTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWS 258
HE+GH+LGM H + +M P+ + P +
Sbjct: 116 YAATHELGHSLGMGHSSDPNA------VMYPTYGNGDPQNFK 151
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 162
Score = 28.7 bits (63), Expect = 0.61
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 217 TTVAHEMGHNLGMEHDTTECTCPSDR-CIMAPSSSSVSPTE 256
AHE GH LG++H + +M+P + P
Sbjct: 115 QVAAHEFGHVLGLQH-------TTAAKALMSPFYTFRYPLS 148
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 158
Score = 28.0 bits (61), Expect = 0.86
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 217 TTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWS 258
T HE+GH+LG+ H + +M P+ V +
Sbjct: 109 LTAVHEIGHSLGLGHSSDPKA------VMFPTYKYVDINTFR 144
>d3e11a1 d.92.1.17 (A:1-113) Uncharacterized protein Acel_2062
{Acidothermus cellulolyticus [TaxId: 28049]}
Length = 113
Score = 27.3 bits (61), Expect = 0.97
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 207 DHKNVVGLVATTVAHEMGHNLGMEHDT 233
V+ V TV HE+ H+ G++ +
Sbjct: 81 TESEVIDEVRKTVVHEIAHHFGIDDER 107
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 163
Score = 27.5 bits (60), Expect = 1.4
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 200 FSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWS 258
F + + + AHE GH+LG+ H + +M P+ + + +S
Sbjct: 97 FDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSSDPGA------LMYPNYAFRETSNYS 149
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId:
9606]}
Length = 161
Score = 27.2 bits (59), Expect = 1.8
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 217 TTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTE 256
AHE GH +G+EH +MAP +
Sbjct: 111 LVAAHEFGHAMGLEH------SQDPGALMAPIYTYTKNFR 144
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 27.1 bits (59), Expect = 1.9
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 218 TVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWS 258
AHE GH+LG++H M P + + +
Sbjct: 116 VAAHEFGHSLGLDHSKDPGAL------MFPIYTYTGKSHFM 150
>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 246
Score = 27.2 bits (59), Expect = 2.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 216 ATTVAHEMGHNLGMEHDTT 234
T+ HE+GH LG+ H
Sbjct: 171 RQTLTHEIGHTLGLSHPGD 189
>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase
(CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 26.9 bits (58), Expect = 2.2
Identities = 28/158 (17%), Positives = 41/158 (25%), Gaps = 18/158 (11%)
Query: 98 YNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITLNVNGDITLTNF 157
+ + N K+ I + L V Y DI +
Sbjct: 13 FCIQNYTPKVGE---YATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFA 69
Query: 158 LSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVAT 217
+ D S P D + G + G + +
Sbjct: 70 EGFHGD----STPFDGEGGFLAHAYFPG---PNIGGDTHFDSAEPWTVRNEDLNGNDIFL 122
Query: 218 TVAHEMGHNLGMEHDTTECTCPSDR-CIMAPSSSSVSP 254
HE+GH LG+EH SD IMAP +
Sbjct: 123 VAVHELGHALGLEH-------SSDPSAIMAPFYQWMDT 153
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 665
Score = 27.4 bits (60), Expect = 2.6
Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 6/89 (6%)
Query: 196 CTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPT 255
FS V + T HE GH + + +D + ++
Sbjct: 436 LVVNFSQPVAGRPSLLRHDEVRTYFHEFGHVM------HQICAQTDFARFSGTNVETDFV 489
Query: 256 EWSSCSLEYLALSFDHGMDYCMRNKPKAC 284
E S LE D K
Sbjct: 490 EVPSQMLENWVWDVDSLRKLSKHYKDGHP 518
>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish
(Astacus astacus) [TaxId: 6715]}
Length = 200
Score = 26.6 bits (58), Expect = 2.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 217 TTVAHEMGHNLGMEHDTTECTCP 239
T+ HE+ H +G H+ T
Sbjct: 88 GTIIHELMHAIGFYHEHTRMDRD 110
>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens
[TaxId: 615]}
Length = 243
Score = 26.3 bits (57), Expect = 4.2
Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 8/89 (8%)
Query: 143 EITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSG 202
E+ +IT N+ P F + + T+
Sbjct: 103 EVAAGQKANITFGNYSQ--------DRPGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVN 154
Query: 203 GVNVDHKNVVGLVATTVAHEMGHNLGMEH 231
NV H T HE+GH LG+ H
Sbjct: 155 QSNVKHPATEDYGRQTFTHEIGHALGLSH 183
>d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus
[TaxId: 53502]}
Length = 132
Score = 25.2 bits (55), Expect = 6.8
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 219 VAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPT 255
AHE GH LG+ D + C +M+ S T
Sbjct: 81 TAHETGHVLGLP-DHYQGPCSE---LMSGGGPGPSCT 113
>d2ejqa1 d.92.1.17 (A:2-108) Uncharacterized protein TTHA0227
{Thermus thermophilus [TaxId: 274]}
Length = 107
Score = 24.7 bits (54), Expect = 7.1
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 211 VVGLVATTVAHEMGHNLG 228
V T+ HE+ H+L
Sbjct: 84 WEAEVWETMLHELRHHLE 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,087,987
Number of extensions: 48737
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 25
Length of query: 285
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,254,276
Effective search space: 252109476
Effective search space used: 252109476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)