BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16062
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 127/244 (52%), Gaps = 11/244 (4%)
Query: 13 GFSQTPIP--SMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYV 70
G S+ P+P + L FG ++T++ FGHISG H+NP+V+V+ I++ + V Y+
Sbjct: 38 GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYI 97
Query: 71 CSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLL 130
+Q LG +IG G++ ++TP ++ G T H +LT L E T L
Sbjct: 98 TAQCLGAIIGAGILYLVTPPSVV---------GGLGVTTVHGNLTAGHGLLVELIITFQL 148
Query: 131 VFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAH 190
VFT DS+ SVA+ +A+ + YTGASMNPARS PA+ W H
Sbjct: 149 VFTIFASCDSKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENH 208
Query: 191 WIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPADVETSLGQIKPPRFGKRAVKLL 250
WIYWV PI+G++++ LY+YVF D + K R ++ + + G + V+
Sbjct: 209 WIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETE 268
Query: 251 ELCL 254
+L L
Sbjct: 269 DLIL 272
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Query: 274 GFSQTPIP--SMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYV 331
G S+ P+P + L FG ++T++ FGHISG H+NP+V+V+ I++ + V Y+
Sbjct: 38 GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYI 97
Query: 332 CSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLL 391
+Q LG +IG G++ ++TP ++ G T H +LT L E T L
Sbjct: 98 TAQCLGAIIGAGILYLVTPPSVV---------GGLGVTTVHGNLTAGHGLLVELIITFQL 148
Query: 392 VFT 394
VFT
Sbjct: 149 VFT 151
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 126/244 (51%), Gaps = 11/244 (4%)
Query: 13 GFSQTPIP--SMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYV 70
G S+ P+P + L FG ++T++ FGHISG H+NP+V+V+ I++ + V Y+
Sbjct: 77 GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYI 136
Query: 71 CSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLL 130
+Q LG +IG G++ ++TP ++ G T H +LT L E T L
Sbjct: 137 TAQCLGAIIGAGILYLVTPPSVV---------GGLGVTTVHGNLTAGHGLLVELIITFQL 187
Query: 131 VFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAH 190
VFT D + SVA+ +A+ + YTGASMNPARS PA+ W H
Sbjct: 188 VFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENH 247
Query: 191 WIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPADVETSLGQIKPPRFGKRAVKLL 250
WIYWV PI+G++++ LY+YVF D + K R ++ + + G + V+
Sbjct: 248 WIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETE 307
Query: 251 ELCL 254
+L L
Sbjct: 308 DLIL 311
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Query: 274 GFSQTPIP--SMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYV 331
G S+ P+P + L FG ++T++ FGHISG H+NP+V+V+ I++ + V Y+
Sbjct: 77 GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYI 136
Query: 332 CSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLL 391
+Q LG +IG G++ ++TP ++ G T H +LT L E T L
Sbjct: 137 TAQCLGAIIGAGILYLVTPPSVV---------GGLGVTTVHGNLTAGHGLLVELIITFQL 187
Query: 392 VFT 394
VFT
Sbjct: 188 VFT 190
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 126/244 (51%), Gaps = 11/244 (4%)
Query: 13 GFSQTPIP--SMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYV 70
G S+ P+P + L FG ++T++ FGHISG H+NP+V+V+ I++ + V Y+
Sbjct: 38 GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYI 97
Query: 71 CSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLL 130
+Q LG +IG G++ ++TP ++ G T H +LT L E T L
Sbjct: 98 TAQCLGAIIGAGILYLVTPPSVV---------GGLGVTTVHGNLTAGHGLLVELIITFQL 148
Query: 131 VFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAH 190
VFT D + SVA+ +A+ + YTGASMNPARS PA+ W H
Sbjct: 149 VFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENH 208
Query: 191 WIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPADVETSLGQIKPPRFGKRAVKLL 250
WIYWV PI+G++++ LY+YVF D + K R ++ + + G + V+
Sbjct: 209 WIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETE 268
Query: 251 ELCL 254
+L L
Sbjct: 269 DLIL 272
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Query: 274 GFSQTPIP--SMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYV 331
G S+ P+P + L FG ++T++ FGHISG H+NP+V+V+ I++ + V Y+
Sbjct: 38 GGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYI 97
Query: 332 CSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLL 391
+Q LG +IG G++ ++TP ++ G T H +LT L E T L
Sbjct: 98 TAQCLGAIIGAGILYLVTPPSVV---------GGLGVTTVHGNLTAGHGLLVELIITFQL 148
Query: 392 VFT 394
VFT
Sbjct: 149 VFT 151
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 113/202 (55%), Gaps = 11/202 (5%)
Query: 13 GFSQTPIP--SMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYV 70
G ++ P+P + L FG ++T++ FGHISG H+NP+V+V+ I++ + V Y+
Sbjct: 29 GGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYI 88
Query: 71 CSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLL 130
+Q LG +IG G++ ++TP ++ G T+ H +LT L E T L
Sbjct: 89 AAQCLGAIIGAGILYLVTPPSVV---------GGLGVTMVHGNLTAGHGLLVELIITFQL 139
Query: 131 VFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAH 190
VFT DS+ S+A+ +A+ + YTGASMNPARS PA+ W H
Sbjct: 140 VFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENH 199
Query: 191 WIYWVAPILGSIVSTLLYKYVF 212
WIYWV PI+G++++ LY+YVF
Sbjct: 200 WIYWVGPIIGAVLAGGLYEYVF 221
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
Query: 274 GFSQTPIP--SMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYV 331
G ++ P+P + L FG ++T++ FGHISG H+NP+V+V+ I++ + V Y+
Sbjct: 29 GGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYI 88
Query: 332 CSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLL 391
+Q LG +IG G++ ++TP ++ G T+ H +LT L E T L
Sbjct: 89 AAQCLGAIIGAGILYLVTPPSVV---------GGLGVTMVHGNLTAGHGLLVELIITFQL 139
Query: 392 VFT 394
VFT
Sbjct: 140 VFT 142
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 13/236 (5%)
Query: 3 MFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMIT 62
+FFG + ++ ++ P+ +Q L FG ++T++ GHISGAH+NP+V+ + + ++
Sbjct: 24 VFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMS 82
Query: 63 MVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLA 122
++ + YV +Q+LG + G ++ +TP + H ++ QA +
Sbjct: 83 LLRAICYVVAQLLGAVAGAAVLYSVTPPAV---------RGNLALNTLHPGVSVGQATIV 133
Query: 123 EFFSTSLLVFTCCGVWDSR-NAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPA 181
E F T V +D R N + G SVA+ + L + YTGA MNPARS APA
Sbjct: 134 EIFLTLQFVLCIFATYDERRNGRLG-SVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPA 192
Query: 182 IYSNVWTAHWIYWVAPILGSIVSTLLYKY-VFSKDHDGKNRPEQLSPADVETSLGQ 236
I + +T HW+YWV P++G+ + +LLY + +F + R L S GQ
Sbjct: 193 ILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSVSERLSILKGTRPSESNGQ 248
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 245 RAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHIS 304
R+ E T +FFG + ++ ++ P+ +Q L FG ++T++ GHIS
Sbjct: 5 RSASFWRAIFAEFFATLFYVFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHIS 63
Query: 305 GAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSN 364
GAH+NP+V+ + + +++L + YV +Q+LG + G ++ +TP +
Sbjct: 64 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV---------RG 114
Query: 365 GFCTTVPHASLTTVQAFLAEFFSTSLLVFTCC 396
H ++ QA + E F T L F C
Sbjct: 115 NLALNTLHPGVSVGQATIVEIFLT--LQFVLC 144
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 12/210 (5%)
Query: 3 MFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMIT 62
+FFG + ++ ++ P+ +Q L FG ++T++ GHISGAH+NP+V+ + + ++
Sbjct: 20 VFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMS 78
Query: 63 MVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLA 122
++ + YV +Q+LG + G ++ +TP + H ++ QA +
Sbjct: 79 LLRAICYVVAQLLGAVAGAAVLYSVTPPAV---------RGNLALNTLHPGVSVGQATIV 129
Query: 123 EFFSTSLLVFTCCGVWD-SRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPA 181
E F T V +D RN + G SVA+ + L + YTGA MNPARS APA
Sbjct: 130 EIFLTLQFVLCIFATYDERRNGRLG-SVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPA 188
Query: 182 IYSNVWTAHWIYWVAPILGSIVSTLLYKYV 211
I + +T HW+YWV P++G+ + +LLY ++
Sbjct: 189 ILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 218
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 245 RAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHIS 304
R+ E T +FFG + ++ ++ P+ +Q L FG ++T++ GHIS
Sbjct: 1 RSASFWRAIFAEFFATLFYVFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHIS 59
Query: 305 GAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSN 364
GAH+NP+V+ + + +++L + YV +Q+LG + G ++ +TP +
Sbjct: 60 GAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV---------RG 110
Query: 365 GFCTTVPHASLTTVQAFLAEFFSTSLLVFTCC 396
H ++ QA + E F T L F C
Sbjct: 111 NLALNTLHPGVSVGQATIVEIFLT--LQFVLC 140
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 12/210 (5%)
Query: 3 MFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMIT 62
+FFG + ++ ++ P+ +Q L FG ++T++ GHISGAH+NP+V+ + + ++
Sbjct: 18 VFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMS 76
Query: 63 MVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLA 122
++ + YV +Q+LG + G ++ +TP + H ++ QA +
Sbjct: 77 LLRAICYVVAQLLGAVAGAAVLYSVTPPAV---------RGNLALNTLHPGVSVGQATIV 127
Query: 123 EFFSTSLLVFTCCGVWD-SRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPA 181
E F T V +D RN + G SVA+ + L + YTGA MNPARS APA
Sbjct: 128 EIFLTLQFVLCIFATYDERRNGRLG-SVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPA 186
Query: 182 IYSNVWTAHWIYWVAPILGSIVSTLLYKYV 211
I + +T HW+YWV P++G+ + +LLY ++
Sbjct: 187 ILTRNFTNHWVYWVGPVIGAGLGSLLYDFL 216
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 256 EVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVS 315
E T +FFG + ++ ++ P+ +Q L FG ++T++ GHISGAH+NP+V+ +
Sbjct: 10 EFFATLFYVFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFA 68
Query: 316 AFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTTVPHASL 375
+ +++L + YV +Q+LG + G ++ +TP + H +
Sbjct: 69 FLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV---------RGNLALNTLHPGV 119
Query: 376 TTVQAFLAEFFSTSLLVFTCC 396
+ QA + E F T L F C
Sbjct: 120 SVGQATIVEIFLT--LQFVLC 138
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 13/236 (5%)
Query: 3 MFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMIT 62
+FFG + ++ ++ P+ +Q L FG ++T++ GHISGAH+NP+V+ + + ++
Sbjct: 24 VFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMS 82
Query: 63 MVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLA 122
++ + Y+ +Q+LG + G ++ +TP + H ++ QA +
Sbjct: 83 LLRAICYMVAQLLGAVAGAAVLYSVTPPAV---------RGNLALNTLHPGVSVGQATIV 133
Query: 123 EFFSTSLLVFTCCGVWDSR-NAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPA 181
E F T V +D R N + G SVA+ + L + YTGA MNPARS APA
Sbjct: 134 EIFLTLQFVLCIFATYDERRNGRLG-SVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPA 192
Query: 182 IYSNVWTAHWIYWVAPILGSIVSTLLYKY-VFSKDHDGKNRPEQLSPADVETSLGQ 236
I + +T HW+YWV P++G+ + +LLY + +F + R L + S GQ
Sbjct: 193 ILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSVSERLSILKGSRPSESNGQ 248
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 245 RAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHIS 304
R+ E + +FFG + ++ ++ P+ +Q L FG ++T++ GHIS
Sbjct: 5 RSASFWRAICAEFFASLFYVFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHIS 63
Query: 305 GAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSN 364
GAH+NP+V+ + + +++L + Y+ +Q+LG + G ++ +TP +
Sbjct: 64 GAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAV---------RG 114
Query: 365 GFCTTVPHASLTTVQAFLAEFFSTSLLVFTCC 396
H ++ QA + E F T L F C
Sbjct: 115 NLALNTLHPGVSVGQATIVEIFLT--LQFVLC 144
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 11/221 (4%)
Query: 13 GFSQTPI-PSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYVC 71
G +QT + +++ L FG ++T+ GHISGAHLNP+V++ L I++ ++Y+
Sbjct: 40 GNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYII 99
Query: 72 SQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLV 131
+Q +G ++ +++ IT + L++G + + Q E T LV
Sbjct: 100 AQCVGAIVATAILSGITSSLTGNSLGRNDLADG---------VNSGQGLGIEIIGTLQLV 150
Query: 132 FTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHW 191
D R G S + L +AL + YTG +NPARS A+ ++ ++ HW
Sbjct: 151 LCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHW 210
Query: 192 IYWVAPILGSIVSTLLYKYVFS-KDHDGKNRPEQLSPADVE 231
I+WV P +G ++ L+Y ++ + + D +R + + VE
Sbjct: 211 IFWVGPFIGGALAVLIYDFILAPRSSDLTDRVKVWTSGQVE 251
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 256 EVLGTSMLMFFGCMSLVQ-----GFSQTPI-PSMQPGLMFGFVVSTVICIFGHISGAHLN 309
E L T++ +F S + G +QT + +++ L FG ++T+ GHISGAHLN
Sbjct: 17 EFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLN 76
Query: 310 PSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNG 365
P+V++ L I++ ++Y+ +Q +G ++ +++ IT +G L++G
Sbjct: 77 PAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADG 132
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 106/213 (49%), Gaps = 10/213 (4%)
Query: 20 PSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYVCSQVLGCLI 79
+++ L FG ++T+ GHISGAHLNP+V++ L I+++ ++Y+ +Q +G ++
Sbjct: 50 DNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIV 109
Query: 80 GVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWD 139
+++ IT P +S GL N V + Q E T LV D
Sbjct: 110 ATAILSGITSS---LPDNSLGL-NALAPGV-----NSGQGLGIEIIGTLQLVLCVLATTD 160
Query: 140 SRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWIYWVAPIL 199
R G S + +AL + YTG +NPARS ++ ++ + HWI+WV P +
Sbjct: 161 RRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFI 220
Query: 200 GSIVSTLLYKYVFS-KDHDGKNRPEQLSPADVE 231
G+ ++ L+Y ++ + + D +R + + VE
Sbjct: 221 GAALAVLIYDFILAPRSSDLTDRVKVWTSGQVE 253
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 281 PSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLI 340
+++ L FG ++T+ GHISGAHLNP+V++ L I++L ++Y+ +Q +G ++
Sbjct: 50 DNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIV 109
Query: 341 GVGLVNIITPEEILFPVGSAGLS 363
+++ IT P S GL+
Sbjct: 110 ATAILSGITSS---LPDNSLGLN 129
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 106/212 (50%), Gaps = 11/212 (5%)
Query: 1 MLMFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEM 60
+ +FFG S ++ S P +Q L FG + T+ G +SG H+NP+++++ +
Sbjct: 24 IFVFFGLGSALKWPSALPT-ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQ 82
Query: 61 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 120
I+++ YV +Q++G + G G IL+ V+ + + T QA
Sbjct: 83 ISLLRAFFYVAAQLVGAIAGAG---------ILYGVAPLNARGNLAVNALNNNTTQGQAM 133
Query: 121 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 180
+ E T L DSR S A+ L + L + +TG SMNPARS P
Sbjct: 134 VVELILTFQLALCIFASTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGP 193
Query: 181 AIYSNVWT-AHWIYWVAPILGSIVSTLLYKYV 211
A+ N ++ AHW++WV PI+G++++ +LY Y+
Sbjct: 194 AVVMNRFSPAHWVFWVGPIVGAVLAAILYFYL 225
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 246 AVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISG 305
+V L+ E L T + +FFG S ++ S P +Q L FG + T+ G +SG
Sbjct: 8 SVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPT-ILQIALAFGLAIGTLAQALGPVSG 66
Query: 306 AHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITP 350
H+NP+++++ + I++L YV +Q++G + G G++ + P
Sbjct: 67 GHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAP 111
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 20/199 (10%)
Query: 25 GLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYVCSQVLGCLIGVGLV 84
GL FGF ++ I G+ISG H+NP+V++ + ++ E+V Y+ +Q+LG G
Sbjct: 59 GLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFG---- 114
Query: 85 NIITPEEILFPVSSAGLS--NGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVW-DSR 141
I + G + G T P ++ QA LAE T LL+ T G+ D R
Sbjct: 115 -----SFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDER 169
Query: 142 NAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIY------SNVWTAHWIYWV 195
K I L +A T+G +G+S+NPAR+ P + +++W + IY +
Sbjct: 170 APK--GFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVI 227
Query: 196 APILGSIVSTLLYKYVFSK 214
PI+G++++ L Y+Y+ S+
Sbjct: 228 GPIVGAVLAALTYQYLTSE 246
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 33/170 (19%)
Query: 247 VKLLELCLGEVLGTSMLMFFGCMS-----LVQGFSQTPIP-------------SMQPGLM 288
V L + C+ E +GT +L+FFG S ++ +P P + GL
Sbjct: 2 VSLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLA 61
Query: 289 FGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNII 348
FGF ++ I G+ISG H+NP+V++ + ++ E+V Y+ +Q+LG G
Sbjct: 62 FGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFG------- 114
Query: 349 TPEEILF----PVGSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFT 394
+F +G+A + G T P ++ QA LAE T LL+ T
Sbjct: 115 ---SFIFLQCAGIGAATV-GGLGATAPFPGISYWQAMLAEVVGTFLLMIT 160
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 246 AVKLLELCLGEVLGTSMLMFFGCMSLVQGFS-QTPIPSMQPGLMFGFVVSTVICIFGHIS 304
+ + L EV+GT +LM + G + P G++ G V+ +I G+IS
Sbjct: 140 GISYWQAMLAEVVGTFLLMI-----TIMGIAVDERAPKGFAGIIIGLTVAGIITTLGNIS 194
Query: 305 GAHLNPSVSVSAFLLEMI-TMLELVLYVCSQVLGCLIG 341
G+ LNP+ + +L +MI +L Y V+G ++G
Sbjct: 195 GSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVG 232
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 20/192 (10%)
Query: 29 GFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYVCSQVLGCLIGVGLVNIIT 88
G + V C G ISG H+NP+V+ FL ++++ ++Y+ +Q LG + GVGLV
Sbjct: 106 GMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFM 164
Query: 89 PEEILFPVSSAGLSNGFCTTVPHASLTTVQ--AFLAEFFSTSLLVFTCCGVWDSRNAKFG 146
G N F +L + A AE T +LV+T D + +
Sbjct: 165 ----------KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 214
Query: 147 DSVAIKFALVIALCSITVG----PYTGASMNPARSLAPAIYSN---VWTAHWIYWVAPIL 199
V I L I V P TG +NPARS A+ N VW WI+WV P +
Sbjct: 215 SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFI 274
Query: 200 GSIVSTLLYKYV 211
G+ V+ ++YV
Sbjct: 275 GAAVAAAYHQYV 286
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 290 GFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVN 346
G + V C G ISG H+NP+V+ FL +++L ++Y+ +Q LG + GVGLV
Sbjct: 106 GMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVK 161
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 20/192 (10%)
Query: 29 GFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYVCSQVLGCLIGVGLVNIIT 88
G + V C G ISG H+NP+V+ FL ++++ ++Y+ +Q LG + GVGLV
Sbjct: 83 GMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFM 141
Query: 89 PEEILFPVSSAGLSNGFCTTVPHASLTTVQ--AFLAEFFSTSLLVFTCCGVWDSRNAKFG 146
G N F +L + A AE T +LV+T D + +
Sbjct: 142 K----------GPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 191
Query: 147 DSVAIKFALVIALCSITVG----PYTGASMNPARSLAPAIYSN---VWTAHWIYWVAPIL 199
V I L I V P TG +NPARS A+ N VW WI+WV P +
Sbjct: 192 SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFI 251
Query: 200 GSIVSTLLYKYV 211
G+ V+ ++YV
Sbjct: 252 GAAVAAAYHQYV 263
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 233 SLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLM---- 288
LG++K F + A+ E + T +L + ++ V G S+ + GL+
Sbjct: 28 DLGELKLWSFWRAAI-------AEFIAT-LLFLYITVATVIGHSKETVVCGSVGLLGIAW 79
Query: 289 -FGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVN 346
FG ++ ++ ISG H+NP+V+ FL +++L ++Y+ +Q LG + GVGLV
Sbjct: 80 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVK 138
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 29 GFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYVCSQVLGCLIGVGLVNIIT 88
G + V C G ISG H+NP+V+ FL + ++ ++Y+ +Q LG + GVGLV
Sbjct: 106 GMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFM 164
Query: 89 PEEILFPVSSAGLSNGFCTTVPHASLTTVQ--AFLAEFFSTSLLVFTCCGVWDSRNAKFG 146
G N F +L + A AE T +LV+T D + +
Sbjct: 165 ----------KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 214
Query: 147 DSVAIKFALVIALCSITVG----PYTGASMNPARSLAPAIYSN---VWTAHWIYWVAPIL 199
V I L I V P TG +NPARS A+ N VW WI+WV P +
Sbjct: 215 SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFI 274
Query: 200 GSIVSTLLYKYVFS 213
G+ V+ ++YV
Sbjct: 275 GAAVAAAYHQYVLR 288
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 290 GFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVN 346
G + V C G ISG H+NP+V+ FL + +L ++Y+ +Q LG + GVGLV
Sbjct: 106 GMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVK 161
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 20/192 (10%)
Query: 29 GFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYVCSQVLGCLIGVGLVNIIT 88
G + V C G ISG H+NP+V+ FL ++++ ++Y+ +Q LG + GVGLV
Sbjct: 83 GMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFM 141
Query: 89 PEEILFPVSSAGLSNGFCTTVPHASLTTVQ--AFLAEFFSTSLLVFTCCGVWDSRNAKFG 146
G N F +L + A AE T +LV+T D + +
Sbjct: 142 K----------GPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 191
Query: 147 DSVAIKFALVIALCSITVG----PYTGASMNPARSLAPAIYSN---VWTAHWIYWVAPIL 199
V I L I V P TG +NPARS A+ N VW WI+WV P +
Sbjct: 192 SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFI 251
Query: 200 GSIVSTLLYKYV 211
G+ V+ ++YV
Sbjct: 252 GAAVAAAYHQYV 263
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 233 SLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLM---- 288
LG++K F + A+ E + T +L + ++ V G S+ + GL+
Sbjct: 28 DLGELKLWSFWRAAIA-------EFIAT-LLFLYITVATVIGHSKETVVCGSVGLLGIAW 79
Query: 289 -FGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVN 346
FG ++ ++ ISG H+NP+V+ FL +++L ++Y+ +Q LG + GVGLV
Sbjct: 80 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVK 138
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 86/192 (44%), Gaps = 20/192 (10%)
Query: 29 GFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYVCSQVLGCLIGVGLVNIIT 88
G + V C G ISG H+NP+V+ FL + ++ ++Y+ +Q LG + GVGLV
Sbjct: 102 GMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFM 160
Query: 89 PEEILFPVSSAGLSNGFCTTVPHASLTTVQ--AFLAEFFSTSLLVFTCCGVWDSRNAKFG 146
G N F +L + A AE T +LV+T D + +
Sbjct: 161 ----------KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARD 210
Query: 147 DSVAIKFALVIALCSITVG----PYTGASMNPARSLAPAIYSN---VWTAHWIYWVAPIL 199
V I L I V P TG +NPARS A+ N VW WI+WV P +
Sbjct: 211 SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFI 270
Query: 200 GSIVSTLLYKYV 211
G+ V+ ++YV
Sbjct: 271 GAAVAAAYHQYV 282
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 290 GFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVN 346
G + V C G ISG H+NP+V+ FL + +L ++Y+ +Q LG + GVGLV
Sbjct: 102 GMIFVLVYCTAG-ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVK 157
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 19/198 (9%)
Query: 25 GLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYVCSQVLGCLIGVGLV 84
G+ F ++ VI G ISGAH+NP+V+++ + + E+V Y+ +Q +G +G
Sbjct: 60 GMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALG---- 115
Query: 85 NIITPEEILFPV---SSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSR 141
+LF +A G T P + QA L E T LL+ GV
Sbjct: 116 ------SLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDE 169
Query: 142 NAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYS-----NVWTAHWIYWVA 196
A G + + L + T+G TG+S+NPAR+ P + N+W IY +
Sbjct: 170 RAPPGFA-GLVIGLTVGGIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIG 228
Query: 197 PILGSIVSTLLYKYVFSK 214
PI+G++ + LY Y+ +
Sbjct: 229 PIVGAVAAAWLYNYLAKE 246
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 286 GLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLV 345
G+ F ++ VI G ISGAH+NP+V+++ + + E+V Y+ +Q +G +G
Sbjct: 60 GMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALG---- 115
Query: 346 NIITPEEILFP--VGSAGLS-NGFCTTVPHASLTTVQAFLAEFFSTSLLV 392
+LF VG A + G T P + QA L E T LL+
Sbjct: 116 ------SLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLM 159
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 39/204 (19%)
Query: 148 SVAIKFALVIALCSITVGPYTGASMNPARSLAPAIYSNVWTAHWI-------YWVAPILG 200
++ + FAL IA ++G +GA +NPA ++A +W+ Y VA +G
Sbjct: 58 AIGMAFALAIAAVIYSLGRISGAHINPAVTIA------LWSIGRFPGREVVPYIVAQFIG 111
Query: 201 SIVSTLLYKYVFSKDHDGKNRPEQLSPADVET-SLGQIKP-PRFGKRAVKLLELCLGEVL 258
+ + +LL+ + PA LG P P G + L E +
Sbjct: 112 AALGSLLFL-------------ACVGPAAATVGGLGATAPFPGIGYG-----QAILTEAI 153
Query: 259 GTSMLMFFGCMSLVQGFS-QTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAF 317
GT +LM ++ G + P GL+ G V +I G+I+G+ LNP+ + +
Sbjct: 154 GTFLLML-----VIMGVAVDERAPPGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGPY 208
Query: 318 LLEMITMLELVLYVCSQVLGCLIG 341
L + + + L Y V+G ++G
Sbjct: 209 LGDSLMGINLWQYFPIYVIGPIVG 232
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 2 LMFFGCMS--LVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLE 59
L+F GC S L GF + I L FG V T+ GHISG H NP+V++ +
Sbjct: 18 LVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGG 77
Query: 60 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQ 118
E+V YV +QV+G ++ L+ +I + F +++G SNG+ P + +
Sbjct: 78 RFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLS 136
Query: 119 AFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALCSITVGPYTGASMNPARS 177
A + E ++ + G D +AI AL +I L SI P T S+NPARS
Sbjct: 137 ALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIGLISI---PVTNFSVNPARS 193
Query: 178 LAPAIYSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 215
A AI+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 194 TAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 256 EVLGTSMLMFFGCMS--LVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVS 313
E GT L+F GC S L GF + I L FG V T+ GHISG H NP+V+
Sbjct: 11 ECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVT 70
Query: 314 VSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGL-SNGFCTTVP 371
+ + E+V YV +QV+G ++ L+ +I + F ++G SNG+ P
Sbjct: 71 IGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP 129
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 2 LMFFGCMS--LVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLE 59
L+F GC S L GF + I L FG V T+ GHISG H NP+V++ +
Sbjct: 15 LVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGG 74
Query: 60 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQ 118
E+V YV +QV+G ++ L+ +I + F +++G SNG+ P + +
Sbjct: 75 RFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLS 133
Query: 119 AFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALCSITVGPYTGASMNPARS 177
A + E ++ + G D +AI AL +I L SI P T S+NPARS
Sbjct: 134 ALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISI---PVTNTSVNPARS 190
Query: 178 LAPAIYSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 215
A AI+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 191 TAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 230
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 256 EVLGTSMLMFFGCMS--LVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVS 313
E GT L+F GC S L GF + I L FG V T+ GHISG H NP+V+
Sbjct: 8 ECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVT 67
Query: 314 VSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGL-SNGFCTTVP 371
+ + E+V YV +QV+G ++ L+ +I + F ++G SNG+ P
Sbjct: 68 IGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP 126
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 125/267 (46%), Gaps = 38/267 (14%)
Query: 1 MLMFFG--CMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLL 58
+L+FFG C++ ++ + + ++FG V+ I + +SGAHLNP+V+++ +L
Sbjct: 20 LLIFFGVGCVAALK-VAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLF 78
Query: 59 EMITMVELVLYVCSQVLGCLIGVGLV-----NII-----TPEEILFPVSSAGLSNGFCTT 108
+++ ++ SQV G LV N+ T + V S L+ F +T
Sbjct: 79 ACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTF-ST 137
Query: 109 VPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNA-KFGDSVAIKFALVIALCSITVGPY 167
P+ + VQAF E T++L+ + D N G + L+IA+ ++GP
Sbjct: 138 YPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPL 197
Query: 168 TGASMNPARSLAPAIYSNVWTAHW-----------IYWVAPILGSIVSTLLYKYVFSKDH 216
TG +MNPAR P +++ W A W Y++ P+ G IV ++ + + K
Sbjct: 198 TGTAMNPARDFGPKVFA--WLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRK-L 254
Query: 217 DGKNRP---------EQLSPADVETSL 234
G++ P E +P++ + SL
Sbjct: 255 IGRHLPCDICVVEEKETTTPSEQKASL 281
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 253 CLGEVLGTSMLMFFG--CMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNP 310
C+ E LGT +L+FFG C++ ++ + + ++FG V+ I + +SGAHLNP
Sbjct: 11 CIAEFLGTGLLIFFGVGCVAALK-VAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNP 69
Query: 311 SVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLV-----NII-----TPEEILFPVGSA 360
+V+++ +L +++ ++ SQV G LV N+ T + V S
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESV 129
Query: 361 GLSNGFCTTVPHASLTTVQAFLAEFFSTSLLV 392
L+ F +T P+ + VQAF E T++L+
Sbjct: 130 DLAGTF-STYPNPHINFVQAFAVEMVITAILM 160
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 2 LMFFGCMS--LVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLE 59
L+F GC S L GF + I L +G V T+ GHISG H NP+V++ +
Sbjct: 18 LVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGG 77
Query: 60 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQ 118
E+V YV +QV+G ++ L+ +I + F +++G SNG+ P + +
Sbjct: 78 RFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLS 136
Query: 119 AFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALCSITVGPYTGASMNPARS 177
A + E ++ + G D +AI AL +I L SI P T S+NPARS
Sbjct: 137 ALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIGLISI---PVTNFSVNPARS 193
Query: 178 LAPAIYSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 215
A AI+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 194 TAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 256 EVLGTSMLMFFGCMS--LVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVS 313
E GT L+F GC S L GF + I L +G V T+ GHISG H NP+V+
Sbjct: 11 ECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVT 70
Query: 314 VSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGL-SNGFCTTVP 371
+ + E+V YV +QV+G ++ L+ +I + F ++G SNG+ P
Sbjct: 71 IGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP 129
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 10/220 (4%)
Query: 2 LMFFGCMS--LVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLE 59
L+F GC S L GF I L +G V T+ GHISG H NP+V++ +
Sbjct: 18 LVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGG 77
Query: 60 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQ 118
E+V YV +QV+G ++ L+ +I + F +++G SNG+ P + +
Sbjct: 78 RFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLS 136
Query: 119 AFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALCSITVGPYTGASMNPARS 177
A + E ++ + G D +AI AL +I L SI P T S+NPARS
Sbjct: 137 ALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISI---PVTNTSVNPARS 193
Query: 178 LAPAIYSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 215
A AI+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 194 TAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 256 EVLGTSMLMFFGCMS--LVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVS 313
E GT L+F GC S L GF I L +G V T+ GHISG H NP+V+
Sbjct: 11 ECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVT 70
Query: 314 VSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGL-SNGFCTTVP 371
+ + E+V YV +QV+G ++ L+ +I + F ++G SNG+ P
Sbjct: 71 IGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP 129
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 125/267 (46%), Gaps = 38/267 (14%)
Query: 1 MLMFFG--CMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLL 58
+L+FFG C++ ++ + + +++G V+ I + +SGAHLNP+V+++ +L
Sbjct: 20 LLIFFGVGCVAALK-VAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLF 78
Query: 59 EMITMVELVLYVCSQVLGCLIGVGLV-----NII-----TPEEILFPVSSAGLSNGFCTT 108
+++ ++ SQV G LV N+ T + V S L+ F +T
Sbjct: 79 ACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTF-ST 137
Query: 109 VPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNA-KFGDSVAIKFALVIALCSITVGPY 167
P+ + VQAF E T++L+ + D N G + L+IA+ ++GP
Sbjct: 138 YPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPL 197
Query: 168 TGASMNPARSLAPAIYSNVWTAHW-----------IYWVAPILGSIVSTLLYKYVFSKDH 216
TG +MNPAR P +++ W A W Y++ P+ G IV ++ + + K
Sbjct: 198 TGFAMNPARDFGPKVFA--WLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRK-L 254
Query: 217 DGKNRP---------EQLSPADVETSL 234
G++ P E +P++ + SL
Sbjct: 255 IGRHLPCDICVVEEKETTTPSEQKASL 281
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 253 CLGEVLGTSMLMFFG--CMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNP 310
C+ E LGT +L+FFG C++ ++ + + +++G V+ I + +SGAHLNP
Sbjct: 11 CIAEFLGTGLLIFFGVGCVAALK-VAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNP 69
Query: 311 SVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLV-----NII-----TPEEILFPVGSA 360
+V+++ +L +++ ++ SQV G LV N+ T + V S
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESV 129
Query: 361 GLSNGFCTTVPHASLTTVQAFLAEFFSTSLLV 392
L+ F +T P+ + VQAF E T++L+
Sbjct: 130 DLAGTF-STYPNPHINFVQAFAVEMVITAILM 160
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 102/214 (47%), Gaps = 8/214 (3%)
Query: 6 GCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVE 65
G L GF + I L FG V T+ GHISG H NP+V++ + E
Sbjct: 24 GSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKE 83
Query: 66 LVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQAFLAEF 124
+V YV +QV+G ++ L+ +I + F +++G SNG+ P + + A + E
Sbjct: 84 VVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLSALVVEL 142
Query: 125 FSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALCSITVGPYTGASMNPARSLAPAIY 183
++ + G D +AI AL +I L SI P T S+NPARS A AI+
Sbjct: 143 VLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISI---PVTNCSVNPARSTAVAIF 199
Query: 184 SNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 215
W W +WV PI+G I+ L+Y+ + K
Sbjct: 200 QGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 246 AVKLLELCLGEVLGTSMLMFFGCMS--LVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHI 303
A + E GT L+F G S L GF + I L FG V T+ GHI
Sbjct: 1 ASHMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHI 60
Query: 304 SGAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGL- 362
SG H NP+V++ + E+V YV +QV+G ++ L+ +I + F ++G
Sbjct: 61 SGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFA 120
Query: 363 SNGFCTTVP 371
SNG+ P
Sbjct: 121 SNGYGEHSP 129
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 102/214 (47%), Gaps = 8/214 (3%)
Query: 6 GCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVE 65
G L GF + I L FG V T+ GHISG H NP+V++ + E
Sbjct: 24 GSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKE 83
Query: 66 LVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQAFLAEF 124
+V YV +QV+G ++ L+ +I + F +++G SNG+ P + + A + E
Sbjct: 84 VVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLSALVVEL 142
Query: 125 FSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALCSITVGPYTGASMNPARSLAPAIY 183
++ + G D +AI AL +I L SI P T S+NPARS A AI+
Sbjct: 143 VLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISI---PVTNCSVNPARSTAVAIF 199
Query: 184 SNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 215
W W +WV PI+G I+ L+Y+ + K
Sbjct: 200 QGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 256 EVLGTSMLMFFGCMS--LVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVS 313
E GT L+F G S L GF + I L FG V T+ GHISG H NP+V+
Sbjct: 11 ESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVT 70
Query: 314 VSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGL-SNGFCTTVP 371
+ + E+V YV +QV+G ++ L+ +I + F ++G SNG+ P
Sbjct: 71 IGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP 129
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 8/214 (3%)
Query: 6 GCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVE 65
G L GF + I L FG V T+ GHISG H NP+V++ + E
Sbjct: 24 GSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKE 83
Query: 66 LVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGL-SNGFCTTVPHASLTTVQAFLAEF 124
+V YV +QV+G ++ L+ +I + F +++G SNG+ P + + A + E
Sbjct: 84 VVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSP-GGYSMLSALVVEL 142
Query: 125 FSTSLLVFTCCGVWDSRNAKFGDSVAIKFA-LVIALCSITVGPYTGASMNPARSLAPAIY 183
++ + G D +AI A +I L SI P T S+NPARS A AI+
Sbjct: 143 VLSAGFLLVIHGATDKFAPAGFAPIAIGLACTLIHLISI---PVTNTSVNPARSTAVAIF 199
Query: 184 SNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 215
W W +WV PI+G I+ L+Y+ + K
Sbjct: 200 QGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 246 AVKLLELCLGEVLGTSMLMFFGCMS--LVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHI 303
A + E GT L+F G S L GF + I L FG V T+ GHI
Sbjct: 1 ASHMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHI 60
Query: 304 SGAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGL- 362
SG H NP+V++ + E+V YV +QV+G ++ L+ +I + F ++G
Sbjct: 61 SGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFA 120
Query: 363 SNGFCTTVP 371
SNG+ P
Sbjct: 121 SNGYGEHSP 129
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 97/219 (44%), Gaps = 10/219 (4%)
Query: 2 LMFFGCMSLV--QGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLE 59
L+F GC S V F + I L FG V T+ G ISG H NP+VSV +
Sbjct: 43 LVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAG 102
Query: 60 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQA 119
LV YV +QV G ++ + +I + + SNG+ P + V A
Sbjct: 103 RFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFA-SNGYGEHSP-GGYSLVSA 160
Query: 120 FLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFAL-VIALCSITVGPYTGASMNPARSL 178
L E T+ + G R +AI AL +I L SI P T S+NPARS
Sbjct: 161 LLIEIILTAFFLIVILGSTHGRVPAGFAPIAIGLALTLIHLISI---PVTNTSVNPARST 217
Query: 179 APAIYSNVWTAH--WIYWVAPILGSIVSTLLYKYVFSKD 215
A++ W W++W+API+G +++K KD
Sbjct: 218 GQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFGEKD 256
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 254 LGEVLGTSMLMFFGCMSLV--QGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPS 311
L E GT L+F GC S V F + I L FG V T+ G ISG H NP+
Sbjct: 34 LAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPA 93
Query: 312 VSVSAFLLEMITMLELVLYV 331
VSV + LV YV
Sbjct: 94 VSVGLTVAGRFPASSLVPYV 113
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 118 QAFLAEFFSTSLLVFTCCG--VWDSRNAKFG---DSVAIKFALVIALCSITVGPYTGASM 172
+ LAEFF T LVF CG V+ + + G VA+ F L + + VG +G
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHF 90
Query: 173 NPARSLA 179
NPA S+
Sbjct: 91 NPAVSVG 97
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 96/206 (46%), Gaps = 23/206 (11%)
Query: 28 FGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYVCSQVLGCLIGVGLVNII 87
FGF V + I +SG +LNP+V+++ L I +L +Q++ + G + +
Sbjct: 92 FGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAM 151
Query: 88 TPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTC--CGVWDSRNAKF 145
TP EI F + G + + E F T++L T V R F
Sbjct: 152 TPGEIAFANALGG------------GASRTRGLFLEAFGTAILCLTVLMLAVEKHRATWF 199
Query: 146 GDSVAIKFALVIA--LCSITVGPYTGASMNPARSLAPAIYSNVW-TAHWIYWVAPILGSI 202
V I AL+IA +C YTGA +NPARS PA+ + + HWIYW+ PILG+
Sbjct: 200 APFV-IGIALLIAHLICIY----YTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAF 254
Query: 203 VSTLLYKYVFSKDHDGKNRPEQLSPA 228
++ +++ ++ N P Q S A
Sbjct: 255 LAYSIWQMWKWLNYQTTN-PGQDSDA 279
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 215 DHDGKNRPEQLSPADVETSLGQIKPPR----FGKRAVKLLELCL-GEVLGTSMLMF--FG 267
++ + ++ P D KP FG +V+ + + GE +GT + ++ F
Sbjct: 5 ENQAADGQAEIKPEDAPYITNAYKPAYARWGFGSDSVRNHFIAMSGEFVGTFLFLWSAFV 64
Query: 268 CMSLVQGFSQTPIPSMQPGLM------FGFVVSTVICIFGHISGAHLNPSVSVSAFLLEM 321
+ +TP P + FGF V + I +SG +LNP+V+++ L
Sbjct: 65 IAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARA 124
Query: 322 ITMLELVLYVCSQVLGCLIGVGLVNIITPEEILF 355
I +L +Q++ + G + +TP EI F
Sbjct: 125 IPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAF 158
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 20/200 (10%)
Query: 26 LMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMVELVLYVCSQVLGCLIGVGLVN 85
L +G V I + +SGAHLN +VS+ + + ++ +Y +Q+LG +G V
Sbjct: 48 LGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVY 107
Query: 86 IITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKF 145
+ I S++ + T + S++ AF E T +L+ V D
Sbjct: 108 GLYHGFI----SNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENIC-- 161
Query: 146 GDSVAIKFALVIAL----CSITVGPYTGASMNPARSLAPAIYS------NVWTAH----W 191
G +K + V+ L IT G TG ++NP+R L S + +T W
Sbjct: 162 GKFHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFW 221
Query: 192 IYWVAPILGSIVSTLLYKYV 211
+ VAP +GS+V Y V
Sbjct: 222 VPLVAPCVGSVVFCQFYDKV 241
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 254 LGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTV--ICIFGHISGAHLNPS 311
+GE LGT +LMF G F T + L G+ ++ I + +SGAHLN +
Sbjct: 14 IGEFLGTFVLMFLG-EGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLA 72
Query: 312 VSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLV 345
VS+ + + ++ +Y +Q+LG +G V
Sbjct: 73 VSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTV 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,041,487
Number of Sequences: 62578
Number of extensions: 437343
Number of successful extensions: 1021
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 874
Number of HSP's gapped (non-prelim): 71
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)