RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16062
(396 letters)
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C
membrane protein, baculovirus expression system,
glycoprote membrane; 10.00A {Rattus norvegicus}
Length = 340
Score = 221 bits (565), Expect = 1e-69
Identities = 80/257 (31%), Positives = 126/257 (49%), Gaps = 12/257 (4%)
Query: 1 MLMFFGCMSLV---QGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFL 57
+ + S + + P+ + L FG ++T++ FGHISG H+NP+V+V+
Sbjct: 64 IFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVC 123
Query: 58 LEMITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTV 117
I++ + V Y+ +Q LG +IG G++ ++TP + G T H +LT
Sbjct: 124 TRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSV---------VGGLGVTTVHGNLTAG 174
Query: 118 QAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARS 177
L E T LVFT D + SVA+ +A+ + YTGASMNPARS
Sbjct: 175 HGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARS 234
Query: 178 LAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPADVETSLGQI 237
PA+ W HWIYWV PI+G++++ LY+YVF D + K R ++ + + G
Sbjct: 235 FGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSY 294
Query: 238 KPPRFGKRAVKLLELCL 254
+ V+ +L L
Sbjct: 295 MEVEDNRSQVETEDLIL 311
Score = 122 bits (308), Expect = 7e-32
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 253 CLGEVLGTSMLMFFGCMSLV---QGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLN 309
E L + + S + + P+ + L FG ++T++ FGHISG H+N
Sbjct: 55 VTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHIN 114
Query: 310 PSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTT 369
P+V+V+ I++ + V Y+ +Q LG +IG G++ ++TP + G T
Sbjct: 115 PAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSV---------VGGLGVT 165
Query: 370 VPHASLTTVQAFLAEFFSTSLLVFTCC 396
H +LT L E T LVFT
Sbjct: 166 TVHGNLTAGHGLLVELIITFQLVFTIF 192
Score = 71.8 bits (176), Expect = 4e-14
Identities = 40/208 (19%), Positives = 68/208 (32%), Gaps = 28/208 (13%)
Query: 113 SLTTVQAFLAEFFSTSLLVFTCCG---VWDSRNAKFGDS---VAIKFALVIALCSITVGP 166
+ +A AEF + + V G W +++ F L IA G
Sbjct: 48 TQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGH 107
Query: 167 YTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQL 225
+G +NPA ++A + Y A LG+I+ + V G +
Sbjct: 108 ISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTV 167
Query: 226 SPADVETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQP 285
+ G + L E++ T L+F S + +
Sbjct: 168 HG---NLTAGH---------GL------LVELIITFQLVFTIFASCD---DKRTDVTGSV 206
Query: 286 GLMFGFVVSTVICIFGHISGAHLNPSVS 313
L GF V+ + +GA +NP+ S
Sbjct: 207 ALAIGFSVAIGHLFAINYTGASMNPARS 234
Score = 28.6 bits (64), Expect = 3.5
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 374 SLTTVQAFLAEFFSTSLLVFTCC 396
+ +A AEF + + V
Sbjct: 48 TQAFWKAVTAEFLAMLIFVLLSV 70
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional
crystal, electron diffraction, electron microscopy,
membrane protein; HET: PEE; 2.80A {Rattus norvegicus}
PDB: 2d57_A
Length = 301
Score = 217 bits (554), Expect = 2e-68
Identities = 80/257 (31%), Positives = 126/257 (49%), Gaps = 12/257 (4%)
Query: 1 MLMFFGCMSLV---QGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFL 57
+ + S + + P+ + L FG ++T++ FGHISG H+NP+V+V+
Sbjct: 25 IFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVC 84
Query: 58 LEMITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTV 117
I++ + V Y+ +Q LG +IG G++ ++TP + G T H +LT
Sbjct: 85 TRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSV---------VGGLGVTTVHGNLTAG 135
Query: 118 QAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARS 177
L E T LVFT D + SVA+ +A+ + YTGASMNPARS
Sbjct: 136 HGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARS 195
Query: 178 LAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPADVETSLGQI 237
PA+ W HWIYWV PI+G++++ LY+YVF D + K R ++ + + G
Sbjct: 196 FGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSY 255
Query: 238 KPPRFGKRAVKLLELCL 254
+ V+ +L L
Sbjct: 256 MEVEDNRSQVETEDLIL 272
Score = 119 bits (301), Expect = 3e-31
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 253 CLGEVLGTSMLMFFGCMSLV---QGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLN 309
E L + + S + + P+ + L FG ++T++ FGHISG H+N
Sbjct: 16 VTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHIN 75
Query: 310 PSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTT 369
P+V+V+ I++ + V Y+ +Q LG +IG G++ ++TP + G T
Sbjct: 76 PAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSV---------VGGLGVT 126
Query: 370 VPHASLTTVQAFLAEFFSTSLLVFTCC 396
H +LT L E T LVFT
Sbjct: 127 TVHGNLTAGHGLLVELIITFQLVFTIF 153
Score = 70.1 bits (172), Expect = 1e-13
Identities = 40/208 (19%), Positives = 68/208 (32%), Gaps = 28/208 (13%)
Query: 113 SLTTVQAFLAEFFSTSLLVFTCCG---VWDSRNAKFGDS---VAIKFALVIALCSITVGP 166
+ +A AEF + + V G W +++ F L IA G
Sbjct: 9 TQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGH 68
Query: 167 YTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQL 225
+G +NPA ++A + Y A LG+I+ + V G +
Sbjct: 69 ISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTV 128
Query: 226 SPADVETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQP 285
+ G + L E++ T L+F S + +
Sbjct: 129 HG---NLTAGH---------GL------LVELIITFQLVFTIFASCD---DKRTDVTGSV 167
Query: 286 GLMFGFVVSTVICIFGHISGAHLNPSVS 313
L GF V+ + +GA +NP+ S
Sbjct: 168 ALAIGFSVAIGHLFAINYTGASMNPARS 195
Score = 28.2 bits (63), Expect = 5.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 374 SLTTVQAFLAEFFSTSLLVFTCC 396
+ +A AEF + + V
Sbjct: 9 TQAFWKAVTAEFLAMLIFVLLSV 31
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0
junctions, AQP0, lens MIP, lipid-protein interac
membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries}
SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Length = 263
Score = 210 bits (537), Expect = 3e-66
Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 10/217 (4%)
Query: 1 MLMFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEM 60
+FFG + + ++ P+ +Q L FG ++T++ GHISGAH+NP+V+ + +
Sbjct: 22 FYVFFGLGASL-RWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQ 80
Query: 61 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 120
++++ + YV +Q+LG + G ++ +TP + H ++ QA
Sbjct: 81 MSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV---------RGNLALNTLHPGVSVGQAT 131
Query: 121 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 180
+ E F T V +D R SVA+ + L + YTGA MNPARS AP
Sbjct: 132 IVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAP 191
Query: 181 AIYSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKDHD 217
AI + +T HW+YWV P++G+ + +LLY ++
Sbjct: 192 AILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLK 228
Score = 118 bits (299), Expect = 3e-31
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 253 CLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSV 312
E T +FFG + + ++ P+ +Q L FG ++T++ GHISGAH+NP+V
Sbjct: 13 IFAEFFATLFYVFFGLGASL-RWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAV 71
Query: 313 SVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTTVPH 372
+ + + +++L + YV +Q+LG + G ++ +TP + H
Sbjct: 72 TFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV---------RGNLALNTLH 122
Query: 373 ASLTTVQAFLAEFFSTSLLVFTCC 396
++ QA + E F T V
Sbjct: 123 PGVSVGQATIVEIFLTLQFVLCIF 146
Score = 67.3 bits (165), Expect = 6e-13
Identities = 49/205 (23%), Positives = 75/205 (36%), Gaps = 26/205 (12%)
Query: 113 SLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDS---VAIKFALVIALCSITVGPYTG 169
S + +A AEFF+T VF G R A VA+ F L +A VG +G
Sbjct: 6 SASFWRAIFAEFFATLFYVFFGLGA-SLRWAPGPLHVLQVALAFGLALATLVQAVGHISG 64
Query: 170 ASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPA 228
A +NPA + A + S + Y VA +LG++ + V G L P
Sbjct: 65 AHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPG 124
Query: 229 DVETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLM 288
S+GQ A + E+ T + + + L
Sbjct: 125 ---VSVGQ---------AT------IVEIFLTLQFVLCIFATYD---ERRNGRLGSVALA 163
Query: 289 FGFVVSTVICIFGHISGAHLNPSVS 313
GF ++ + +GA +NP+ S
Sbjct: 164 VGFSLTLGHLFGMYYTGAGMNPARS 188
Score = 28.4 bits (64), Expect = 3.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 374 SLTTVQAFLAEFFSTSLLVFTCC 396
S + +A AEFF+T VF
Sbjct: 6 SASFWRAIFAEFFATLFYVFFGL 28
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 206 bits (526), Expect = 1e-64
Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 18/240 (7%)
Query: 1 MLMFFGCMSLV--------QGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVS 52
+ +F S + + +++ L FG ++T+ GHISGAHLNP+V+
Sbjct: 23 LFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT 82
Query: 53 VSAFLLEMITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHA 112
+ L I+++ ++Y+ +Q +G ++ +++ IT N
Sbjct: 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP---------DNSLGLNALAP 133
Query: 113 SLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASM 172
+ + Q E T LV D R G S + +AL + YTG +
Sbjct: 134 GVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGI 193
Query: 173 NPARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVF-SKDHDGKNRPEQLSPADVE 231
NPARS ++ ++ + HWI+WV P +G+ ++ L+Y ++ + D +R + + VE
Sbjct: 194 NPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSDLTDRVKVWTSGQVE 253
Score = 112 bits (283), Expect = 5e-29
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 17/152 (11%)
Query: 253 CLGEVLGTSMLMFFGCMSLV--------QGFSQTPIPSMQPGLMFGFVVSTVICIFGHIS 304
+ E L + +F S + + +++ L FG ++T+ GHIS
Sbjct: 14 VVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHIS 73
Query: 305 GAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSN 364
GAHLNP+V++ L I++L ++Y+ +Q +G ++ +++ IT N
Sbjct: 74 GAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP---------DN 124
Query: 365 GFCTTVPHASLTTVQAFLAEFFSTSLLVFTCC 396
+ + Q E T LV
Sbjct: 125 SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVL 156
Score = 65.9 bits (161), Expect = 2e-12
Identities = 44/208 (21%), Positives = 79/208 (37%), Gaps = 33/208 (15%)
Query: 118 QAFLAEFFSTSLLVFTCCG---VWDSRNAKFGDS--------VAIKFALVIALCSITVGP 166
+A +AEF + L +F G + + V++ F L IA + +VG
Sbjct: 12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71
Query: 167 YTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQL 225
+GA +NPA +L + + +Y +A +G+IV+T + + S D L
Sbjct: 72 ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131
Query: 226 SPADVETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQP 285
+P + GQ + E++GT L+ + +
Sbjct: 132 APG---VNSGQ---------GL------GIEIIGTLQLVLCVLATTD---RRRRDLGGSG 170
Query: 286 GLMFGFVVSTVICIFGHISGAHLNPSVS 313
L GF V+ + +G +NP+ S
Sbjct: 171 PLAIGFSVALGHLLAIDYTGCGINPARS 198
Score = 27.7 bits (62), Expect = 6.8
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 379 QAFLAEFFSTSLLVFTCC 396
+A +AEF + L +F
Sbjct: 12 RAVVAEFLAMILFIFISI 29
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein
structure initiative, center for structures of MEMB
proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo
sapiens}
Length = 223
Score = 203 bits (520), Expect = 3e-64
Identities = 73/215 (33%), Positives = 112/215 (52%), Gaps = 12/215 (5%)
Query: 1 MLMFFGCMSLV---QGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFL 57
+ + S + P+ + L FG ++T++ FGHISG H+NP+V+V+
Sbjct: 16 IFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVC 75
Query: 58 LEMITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTV 117
I++ + V Y+ +Q LG +IG G++ ++TP + G T+ H +LT
Sbjct: 76 TRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSV---------VGGLGVTMVHGNLTAG 126
Query: 118 QAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARS 177
L E T LVFT DS+ S+A+ +A+ + YTGASMNPARS
Sbjct: 127 HGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNPARS 186
Query: 178 LAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVF 212
PA+ W HWIYWV PI+G++++ LY+YVF
Sbjct: 187 FGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 221
Score = 115 bits (289), Expect = 3e-30
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 253 CLGEVLGTSMLMFFGCMSLV---QGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLN 309
E L + + S + P+ + L FG ++T++ FGHISG H+N
Sbjct: 7 VTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHIN 66
Query: 310 PSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTT 369
P+V+V+ I++ + V Y+ +Q LG +IG G++ ++TP + G T
Sbjct: 67 PAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSV---------VGGLGVT 117
Query: 370 VPHASLTTVQAFLAEFFSTSLLVFTCC 396
+ H +LT L E T LVFT
Sbjct: 118 MVHGNLTAGHGLLVELIITFQLVFTIF 144
Score = 65.3 bits (160), Expect = 2e-12
Identities = 41/203 (20%), Positives = 68/203 (33%), Gaps = 28/203 (13%)
Query: 118 QAFLAEFFSTSLLVFTCCG---VWDSRNAKFGDS---VAIKFALVIALCSITVGPYTGAS 171
+A AEF + + V G W +++ F L IA G +G
Sbjct: 5 KAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGH 64
Query: 172 MNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPADV 230
+NPA ++A + Y A LG+I+ + V G +
Sbjct: 65 INPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHG--- 121
Query: 231 ETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMFG 290
+ G + L E++ T L+F S S+ + L G
Sbjct: 122 NLTAGH---------GL------LVELIITFQLVFTIFASCD---SKRTDVTGSIALAIG 163
Query: 291 FVVSTVICIFGHISGAHLNPSVS 313
F V+ + +GA +NP+ S
Sbjct: 164 FSVAIGHLFAINYTGASMNPARS 186
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water
transport, X-RAY diffraction, lipid, phosphatidylserine,
PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo
sapiens}
Length = 266
Score = 205 bits (524), Expect = 3e-64
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 11/216 (5%)
Query: 1 MLMFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEM 60
+ +FFG S + +Q L FG + T+ G +SG H+NP+++++ +
Sbjct: 24 IFVFFGLGS-ALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQ 82
Query: 61 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 120
I+++ YV +Q++G + G G++ + P + + T QA
Sbjct: 83 ISLLRAFFYVAAQLVGAIAGAGILYGVAPLNA---------RGNLAVNALNNNTTQGQAM 133
Query: 121 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 180
+ E T L DSR S A+ L + L + +TG SMNPARS P
Sbjct: 134 VVELILTFQLALCIFASTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGP 193
Query: 181 AIYSNVWTA-HWIYWVAPILGSIVSTLLYKYVFSKD 215
A+ N ++ HW++WV PI+G++++ +LY Y+ +
Sbjct: 194 AVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPN 229
Score = 119 bits (300), Expect = 2e-31
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 253 CLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSV 312
E L T + +FFG S + +Q L FG + T+ G +SG H+NP++
Sbjct: 15 VFAEFLATLIFVFFGLGS-ALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAI 73
Query: 313 SVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTTVPH 372
+++ + I++L YV +Q++G + G G++ + P +
Sbjct: 74 TLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNA---------RGNLAVNALN 124
Query: 373 ASLTTVQAFLAEFFSTSLLVFTCC 396
+ T QA + E T L
Sbjct: 125 NNTTQGQAMVVELILTFQLALCIF 148
Score = 68.1 bits (167), Expect = 3e-13
Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 24/204 (11%)
Query: 113 SLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGD--SVAIKFALVIALCSITVGPYTGA 170
S+ ++A AEF +T + VF G + +A+ F L I + +GP +G
Sbjct: 8 SVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPTILQIALAFGLAIGTLAQALGPVSGG 67
Query: 171 SMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPAD 229
+NPA +LA + + + + Y A ++G+I + V + G L+
Sbjct: 68 HINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNN-- 125
Query: 230 VETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMF 289
T+ GQ A+ + E++ T L S + P L
Sbjct: 126 -NTTQGQ---------AM------VVELILTFQLALCIFASTDSRRTSPVG---SPALSI 166
Query: 290 GFVVSTVICIFGHISGAHLNPSVS 313
G V+ + + +G +NP+ S
Sbjct: 167 GLSVTLGHLVGIYFTGCSMNPARS 190
Score = 28.1 bits (63), Expect = 4.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 374 SLTTVQAFLAEFFSTSLLVFTCC 396
S+ ++A AEF +T + VF
Sbjct: 8 SVAFLKAVFAEFLATLIFVFFGL 30
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P
protein structure initiative, center for structures of
MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli}
PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A*
3nka_A* 3nkc_A*
Length = 234
Score = 189 bits (483), Expect = 1e-58
Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 6/218 (2%)
Query: 1 MLMFFGCMS--LVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLL 58
L+F G S L GF + I L FG V T+ GHISG H NP+V++ +
Sbjct: 17 WLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAG 76
Query: 59 EMITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQ 118
E+V YV +QV+G ++ L+ +I + F +++G ++ + +
Sbjct: 77 GRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 136
Query: 119 AFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSL 178
A + E ++ + G D +AI A L + P T S+NPARS
Sbjct: 137 ALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLAC--TLIHLISIPVTNTSVNPARST 194
Query: 179 APAIYSNVWTA--HWIYWVAPILGSIVSTLLYKYVFSK 214
A AI+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 195 AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEK 232
Score = 114 bits (288), Expect = 5e-30
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 2/146 (1%)
Query: 253 CLGEVLGTSMLMFFGCMS--LVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNP 310
E GT L+F G S L GF + I L FG V T+ GHISG H NP
Sbjct: 8 LAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNP 67
Query: 311 SVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTTV 370
+V++ + E+V YV +QV+G ++ L+ +I + F ++G ++
Sbjct: 68 AVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH 127
Query: 371 PHASLTTVQAFLAEFFSTSLLVFTCC 396
+ + A + E ++ +
Sbjct: 128 SPGGYSMLSALVVELVLSAGFLLVIH 153
Score = 62.2 bits (152), Expect = 3e-11
Identities = 36/207 (17%), Positives = 70/207 (33%), Gaps = 20/207 (9%)
Query: 113 SLTTVQAFLAEFFSTSLLVFTCCG--VWDSRNAKFGDS---VAIKFALVIALCSITVGPY 167
+ + AE F T LVF G V + + G VA+ F L + + VG
Sbjct: 1 ASHMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHI 60
Query: 168 TGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLS 226
+G NPA ++ Y +A ++G IV+ L + S +
Sbjct: 61 SGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFA 120
Query: 227 PADVETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPG 286
G+ P + + ++ E++ ++ + F+
Sbjct: 121 S----NGYGEHSPGGYSMLSALVV-----ELVLSAGFLLV-IHGATDKFAPAGF----AP 166
Query: 287 LMFGFVVSTVICIFGHISGAHLNPSVS 313
+ G + + I ++ +NP+ S
Sbjct: 167 IAIGLACTLIHLISIPVTNTSVNPARS 193
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport
protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A
1z98_A 2b5f_A
Length = 304
Score = 191 bits (486), Expect = 4e-58
Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 21/225 (9%)
Query: 1 MLMFFGCMSLVQGFSQTPIPSMQPGLM-----FGFVVSTVICIFGHISGAHLNPSVSVSA 55
+ ++ + V G S+ + GL+ FG ++ ++ ISG H+NP+V+
Sbjct: 73 LFLYITVAT-VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 131
Query: 56 FLLEMITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLT 115
FL + ++ ++Y+ +Q LG + GVGLV G
Sbjct: 132 FLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPY--------NQFGGGANSVALGYN 183
Query: 116 TVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSV----AIKFALVIALCSITVGPYTGAS 171
A AE T +LV+T D + + V + + + + P TG
Sbjct: 184 KGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTG 243
Query: 172 MNPARSLAPAIYSN---VWTAHWIYWVAPILGSIVSTLLYKYVFS 213
+NPARS A+ N VW WI+WV P +G+ V+ ++YV
Sbjct: 244 INPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLR 288
Score = 113 bits (285), Expect = 6e-29
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 14/149 (9%)
Query: 253 CLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLM-----FGFVVSTVICIFGHISGAH 307
+ E + T + ++ + V G S+ + GL+ FG ++ ++ ISG H
Sbjct: 64 AIAEFIATLLFLYITVAT-VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGH 122
Query: 308 LNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFC 367
+NP+V+ FL + +L ++Y+ +Q LG + GVGLV G
Sbjct: 123 INPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPY--------NQFGGG 174
Query: 368 TTVPHASLTTVQAFLAEFFSTSLLVFTCC 396
A AE T +LV+T
Sbjct: 175 ANSVALGYNKGTALGAEIIGTFVLVYTVF 203
Score = 65.1 bits (159), Expect = 6e-12
Identities = 41/211 (19%), Positives = 73/211 (34%), Gaps = 28/211 (13%)
Query: 113 SLTTVQAFLAEFFSTSLLVFTCCG---VWDSRNAKFGDS----VAIKFALVIALCSITVG 165
+ +A +AEF +T L ++ G +A F +I +
Sbjct: 57 LWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTA 116
Query: 166 PYTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQ 224
+G +NPA + + V +Y +A LG+I L K ++
Sbjct: 117 GISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGAN 176
Query: 225 LSPADVETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMF--FGCMSLVQGFSQTPIPS 282
+ G A+ E++GT +L++ F + + +P
Sbjct: 177 SVALGY--NKGT---------AL------GAEIIGTFVLVYTVFSATDPKRSARDSHVPI 219
Query: 283 MQPGLMFGFVVSTVICIFGHISGAHLNPSVS 313
+ P L GF V V I+G +NP+ S
Sbjct: 220 LAP-LPIGFAVFMVHLATIPITGTGINPARS 249
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel,
structu genomics, PSI-2, protein structure initiative;
2.01A {Agrobacterium tumefaciens str}
Length = 256
Score = 183 bits (466), Expect = 1e-55
Identities = 64/219 (29%), Positives = 94/219 (42%), Gaps = 8/219 (3%)
Query: 1 MLMFFGCMSLVQGFSQTPIPSMQPG--LMFGFVVSTVICIFGHISGAHLNPSVSVSAFLL 58
L+F GC S V + + G L FG V T+ G ISG H NP+VSV +
Sbjct: 42 WLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVA 101
Query: 59 EMITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQ 118
LV YV +QV G ++ + +I + + SNG+ P + V
Sbjct: 102 GRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFA-SNGYGEHSP-GGYSLVS 159
Query: 119 AFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSL 178
A L E T+ + G R +AI A + L + P T S+NPARS
Sbjct: 160 ALLIEIILTAFFLIVILGSTHGRVPAGFAPIAIGLA--LTLIHLISIPVTNTSVNPARST 217
Query: 179 APAIYSNVWT--AHWIYWVAPILGSIVSTLLYKYVFSKD 215
A++ W W++W+API+G +++K KD
Sbjct: 218 GQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFGEKD 256
Score = 110 bits (276), Expect = 4e-28
Identities = 44/146 (30%), Positives = 61/146 (41%), Gaps = 4/146 (2%)
Query: 253 CLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPG--LMFGFVVSTVICIFGHISGAHLNP 310
L E GT L+F GC S V + + G L FG V T+ G ISG H NP
Sbjct: 33 LLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNP 92
Query: 311 SVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTTV 370
+VSV + LV YV +QV G ++ + +I + +G SNG+
Sbjct: 93 AVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFA-SNGYGEHS 151
Query: 371 PHASLTTVQAFLAEFFSTSLLVFTCC 396
P + V A L E T+ +
Sbjct: 152 P-GGYSLVSALLIEIILTAFFLIVIL 176
Score = 66.6 bits (163), Expect = 1e-12
Identities = 47/247 (19%), Positives = 98/247 (39%), Gaps = 23/247 (9%)
Query: 113 SLTTVQAFLAEFFSTSLLVFTCCG--VWDSRNAKFGDS---VAIKFALVIALCSITVGPY 167
S + LAEFF T LVF CG V+ + + G VA+ F L + + VG
Sbjct: 26 SYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGI 85
Query: 168 TGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLS 226
+G NPA S+ + ++ Y +A + G+IV+ + + +
Sbjct: 86 SGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIAT------GKAGIDL 139
Query: 227 PADVETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPG 286
G+ P + + L+ E++ T+ + ++ G + +P+
Sbjct: 140 GGFASNGYGEHSPGGYSLVSALLI-----EIILTAFFLI-----VILGSTHGRVPAGFAP 189
Query: 287 LMFGFVVSTVICIFGHISGAHLNPSVSVS-AFLLEMITMLELVLYVCSQVLGCLIGVGLV 345
+ G ++ + I ++ +NP+ S A + + +L L+ + ++G G +
Sbjct: 190 IAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIW 249
Query: 346 NIITPEE 352
+ ++
Sbjct: 250 KLFGEKD 256
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane
protein; HET: BOG; 1.15A {Komagataella pastoris} PDB:
2w1p_A*
Length = 279
Score = 174 bits (443), Expect = 4e-52
Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 25/234 (10%)
Query: 1 MLMFFGCMSLVQGFSQTPIPSMQPG--------LMFGFVVSTVICIFGHISGAHLNPSVS 52
+ ++ + P FGF V + I +SG +LNP+V+
Sbjct: 57 LFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVT 116
Query: 53 VSAFLLEMITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHA 112
++ L I +L +Q++ + G + +TP EI F
Sbjct: 117 LALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAF------------ANALGG 164
Query: 113 SLTTVQAFLAEFFSTSLLVFTCCGVWDS-RNAKFGDSVAIKFALVIALCSITVGPYTGAS 171
+ + E F T++L T + A + I AL + + YTGA
Sbjct: 165 GASRTRGLFLEAFGTAILCLTVLMLAVEKHRATWFAPFVIGIAL--LIAHLICIYYTGAG 222
Query: 172 MNPARSLAPAIYSNVWTA-HWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQ 224
+NPARS PA+ + + HWIYW+ PILG+ ++ +++ ++ N P Q
Sbjct: 223 LNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQTTN-PGQ 275
Score = 103 bits (258), Expect = 2e-25
Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 20/150 (13%)
Query: 253 CLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPG--------LMFGFVVSTVICIFGHIS 304
GE +GT + ++ + P FGF V + I +S
Sbjct: 48 MSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVS 107
Query: 305 GAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSN 364
G +LNP+V+++ L I +L +Q++ + G + +TP EI F
Sbjct: 108 GGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAF--------- 158
Query: 365 GFCTTVPHASLTTVQAFLAEFFSTSLLVFT 394
+ + E F T++L T
Sbjct: 159 ---ANALGGGASRTRGLFLEAFGTAILCLT 185
Score = 61.6 bits (150), Expect = 6e-11
Identities = 31/209 (14%), Positives = 62/209 (29%), Gaps = 37/209 (17%)
Query: 117 VQAFLAEFFSTSLLVFTCCG---VWDSRNAKFGDS--------VAIKFALVIALCSITVG 165
A EF T L +++ + + ++ F + +
Sbjct: 45 FIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITY 104
Query: 166 PYTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQ 224
+G ++NPA +LA + + + I+ + + + + N
Sbjct: 105 RVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANA--- 161
Query: 225 LSPADVETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQ 284
L S + + E GT++L M V+ T
Sbjct: 162 LGGG---ASRTR---------GL------FLEAFGTAILCLTVLMLAVEKHRATWF---- 199
Query: 285 PGLMFGFVVSTVICIFGHISGAHLNPSVS 313
+ G + I + +GA LNP+ S
Sbjct: 200 APFVIGIALLIAHLICIYYTGAGLNPARS 228
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel,
structural GENO PSI-2, protein structure initiative;
1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A
3ne2_A*
Length = 246
Score = 150 bits (382), Expect = 2e-43
Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 32/238 (13%)
Query: 1 MLMFFGCMSLVQGFSQTPIPSMQPG------------------LMFGFVVSTVICIFGHI 42
+L+FFG S + L FGF ++ I G+I
Sbjct: 17 ILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNI 76
Query: 43 SGAHLNPSVSVSAFLLEMITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLS 102
SG H+NP+V++ + ++ E+V Y+ +Q+LG G + A
Sbjct: 77 SGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIG-------AATV 129
Query: 103 NGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSI 162
G T P ++ QA LAE T LL+ T G+ A I L +A
Sbjct: 130 GGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAP-KGFAGIIIGLTVAGIIT 188
Query: 163 TVGPYTGASMNPARSLAPAIYSNV------WTAHWIYWVAPILGSIVSTLLYKYVFSK 214
T+G +G+S+NPAR+ P + + W + IY + PI+G++++ L Y+Y+ S+
Sbjct: 189 TLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTSE 246
Score = 90.1 bits (224), Expect = 6e-21
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 25/160 (15%)
Query: 253 CLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPG------------------LMFGFVVS 294
C+ E +GT +L+FFG S + L FGF ++
Sbjct: 8 CIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIA 67
Query: 295 TVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEIL 354
I G+ISG H+NP+V++ + ++ E+V Y+ +Q+LG G +
Sbjct: 68 ASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAG---- 123
Query: 355 FPVGSAGLSNGFCTTVPHASLTTVQAFLAEFFSTSLLVFT 394
A G T P ++ QA LAE T LL+ T
Sbjct: 124 ---IGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMIT 160
Score = 63.1 bits (154), Expect = 2e-11
Identities = 45/265 (16%), Positives = 84/265 (31%), Gaps = 47/265 (17%)
Query: 114 LTTVQAFLAEFFSTSLLVFTCCGV--------------------WDSRNAKFG-DSVAIK 152
++ + +AEF T +LVF G ++ +
Sbjct: 2 VSLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLA 61
Query: 153 FALVIALCSITVGPYTGASMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYV 211
F IA +G +G +NPA ++ Y +A +LG+ + ++
Sbjct: 62 FGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQC 121
Query: 212 FSKDHDGKNRPEQLSPADVETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSL 271
+P + + L EV+GT +LM
Sbjct: 122 AGIGAATVGGLGATAPFP----------------GISYWQAMLAEVVGTFLLMITIMGIA 165
Query: 272 VQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVS-----VSAFLLEMITMLE 326
V + G++ G V+ +I G+ISG+ LNP+ +
Sbjct: 166 VDERAPKGF----AGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNY 221
Query: 327 LVLYVCSQVLGCLIGVGLVNIITPE 351
+YV ++G ++ +T E
Sbjct: 222 YSIYVIGPIVGAVLAALTYQYLTSE 246
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport,
structural GEN PSI-2, protein structure initiative; HET:
BOG; 2.05A {Plasmodium falciparum}
Length = 258
Score = 145 bits (367), Expect = 4e-41
Identities = 55/237 (23%), Positives = 92/237 (38%), Gaps = 17/237 (7%)
Query: 1 MLMFFGCMSLVQ-GFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLE 59
+LMF G + + + L +G V I + +SGAHLN +VS+ +
Sbjct: 22 VLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSIN 81
Query: 60 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQA 119
+ ++ +Y +Q+LG +G V + I + T+ + S++ A
Sbjct: 82 KFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFA---WETS-RNPSISLTGA 137
Query: 120 FLAEFFSTSLLVFTCCGVWDSRNAKF--GDSVAIKFALVIALCSITVGPYTGASMNPARS 177
F E T +L+ V D ++ L+I IT G TG ++NP+R
Sbjct: 138 FFNELILTGILLLVILVVVDENICGKFHILKLSSVVGLIILCIGITFGGNTGFALNPSRD 197
Query: 178 LAPAI------YSNVWTAH----WIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQ 224
L + +T W+ VAP +GS+V Y V D N +
Sbjct: 198 LGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPLVDLANNEKD 254
Score = 90.7 bits (226), Expect = 4e-21
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Query: 253 CLGEVLGTSMLMFFGCMSLVQ-GFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPS 311
+GE LGT +LMF G + + + L +G V I + +SGAHLN +
Sbjct: 13 FIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLA 72
Query: 312 VSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTTVP 371
VS+ + + ++ +Y +Q+LG +G V + I + T+
Sbjct: 73 VSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFA---WETS-R 128
Query: 372 HASLTTVQAFLAEFFSTSLLVFT 394
+ S++ AF E T +L+
Sbjct: 129 NPSISLTGAFFNELILTGILLLV 151
Score = 70.3 bits (173), Expect = 6e-14
Identities = 34/204 (16%), Positives = 72/204 (35%), Gaps = 25/204 (12%)
Query: 115 TTVQAFLAEFFSTSLLVFTCCGV---WDSRNAKFG-DSVAIKFALVIALCSITVGPYTGA 170
+ V+ F+ EF T +L+F G + + + + + L + + +GA
Sbjct: 8 SYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGA 67
Query: 171 SMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQL---S 226
+N A S+ + + +Y+ A +LG+ V T ++ P+ S
Sbjct: 68 HLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETS 127
Query: 227 PADVETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPG 286
+ G E++ T +L+ + +V ++
Sbjct: 128 RNPSISLTGAF----------------FNELILTGILLL-VILVVVDENICGKFHILKLS 170
Query: 287 LMFGFVVSTVICIFGHISGAHLNP 310
+ G ++ + FG +G LNP
Sbjct: 171 SVVGLIILCIGITFGGNTGFALNP 194
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane
channel protein, transport PROT; HET: BOG; 2.10A
{Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A*
1ldi_A*
Length = 281
Score = 143 bits (364), Expect = 2e-40
Identities = 63/263 (23%), Positives = 110/263 (41%), Gaps = 30/263 (11%)
Query: 1 MLMFFGCMSLVQ-GFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLE 59
+L+FFG + + + ++FG V+ I + +SGAHLNP+V+++ +L
Sbjct: 20 LLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFA 79
Query: 60 MITMVELVLYVCSQVLGCLIGVGLVNII----------TPEEILFPVSSAGLSNGFCTTV 109
+++ ++ SQV G LV + T + V S L+ F T
Sbjct: 80 CFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTY- 138
Query: 110 PHASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVA-IKFALVIALCSITVGPYT 168
P+ + VQAF E T++L+ + D N +A + L+IA+ ++GP T
Sbjct: 139 PNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLT 198
Query: 169 GASMNPARSLAPAI-------------YSNVWTAHWIYWVAPILGSIVSTLLYKYVFSKD 215
G +MNPAR P + + PI+G+IV Y+ + +
Sbjct: 199 GTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRH 258
Query: 216 HDG----KNRPEQLSPADVETSL 234
E +P++ + SL
Sbjct: 259 LPCDICVVEEKETTTPSEQKASL 281
Score = 94.2 bits (235), Expect = 4e-22
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 253 CLGEVLGTSMLMFFGCMSLVQ-GFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPS 311
C+ E LGT +L+FFG + + + ++FG V+ I + +SGAHLNP+
Sbjct: 11 CIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPA 70
Query: 312 VSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNII----------TPEEILFPVGSAG 361
V+++ +L +++ ++ SQV G LV + T + V S
Sbjct: 71 VTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVD 130
Query: 362 LSNGFCTTVPHASLTTVQAFLAEFFSTSLLVF 393
L+ F T P+ + VQAF E T++L+
Sbjct: 131 LAGTFSTY-PNPHINFVQAFAVEMVITAILMG 161
Score = 63.8 bits (156), Expect = 1e-11
Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 21/208 (10%)
Query: 115 TTVQAFLAEFFSTSLLVFTCCGV---WDSRNAKFGD-SVAIKFALVIALCSITVGPYTGA 170
T +AEF T LL+F G A FG +++ F L +A+ +GA
Sbjct: 6 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGA 65
Query: 171 SMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLL----YKYVFSKDHDGKNRPEQL 225
+NPA ++A +++ + V+ + G+ + L Y +F D + + +
Sbjct: 66 HLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLF-FDFEQTHHIVRG 124
Query: 226 SPADVETSLGQIKPPRFG---KRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPS 282
S V+ + F + ++ E++ T++LM ++L + P
Sbjct: 125 SVESVDLAGT------FSTYPNPHINFVQAFAVEMVITAILM-GLILALTDDGNGVPRGP 177
Query: 283 MQPGLMFGFVVSTVICIFGHISGAHLNP 310
+ P L+ G +++ + G ++G +NP
Sbjct: 178 LAP-LLIGLLIAVIGASMGPLTGTAMNP 204
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 8e-06
Identities = 36/252 (14%), Positives = 69/252 (27%), Gaps = 92/252 (36%)
Query: 66 LVLYVCSQ--VLGCL------IGVGLVNIITPEEILFPVSS--AGLSNGFCTTVPHAS-- 113
+ L VC V + + + N +PE +L + + + + H+S
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 114 ---LTTVQAFLAEFFST-----SLLVFTCCGVWD----------------SRNAKFGDSV 149
+ ++QA L + LLV V + +R + D +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 150 AIK----------------------FALVIALCSITVGPYTGASMNP-ARSLAPAIYSNV 186
+ + C P + NP S+ +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRD- 339
Query: 187 WTAHWIYW-------VAPILGSIVSTL-------LYKY--VFSKDHDGKNRPEQL----- 225
A W W + I+ S ++ L ++ VF + P L
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS---AHIPTILLSLIW 396
Query: 226 ---SPADVETSL 234
+DV +
Sbjct: 397 FDVIKSDVMVVV 408
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.44
Identities = 60/366 (16%), Positives = 108/366 (29%), Gaps = 94/366 (25%)
Query: 11 VQGFSQTPIPSMQPGLMFGFVVSTVICIFGHIS------GAHLNPSVSVSAFLLEMITMV 64
+ +S P+ L +V T F S L A E T
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTAS--FFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 65 ELVL----YVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTT--VQ 118
ELV YV S V +G +++L + L F L +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVG-------QFDQVL----NLCL-TEFENCY----LEGNDIH 102
Query: 119 AFLAEFFS---TSLLV--------FTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPY 167
A A+ T+L+ T + K +S AL A+
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-----ALFRAVGEGNAQLV 157
Query: 168 T-----GASMNPARSLAPAIYS--NVWTAHWIYWVAPILGSIVSTLL-YKYVFSKDHDGK 219
G + + L +Y +V I + A L ++ T L + VF++ +
Sbjct: 158 AIFGGQGNTDDYFEELR-DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 220 ---NRPEQLSPAD----VETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLV 272
P D + S I G +++L V L
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLI-----G-----VIQLAHYVVT---------AKLL- 256
Query: 273 QGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYV- 331
GF+ PG + ++ G ++ + + S +F + + + ++ ++
Sbjct: 257 -GFT--------PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 332 --CSQV 335
C +
Sbjct: 308 VRCYEA 313
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.434
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,907,988
Number of extensions: 353318
Number of successful extensions: 803
Number of sequences better than 10.0: 1
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 60
Length of query: 396
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 300
Effective length of database: 4,021,377
Effective search space: 1206413100
Effective search space used: 1206413100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.4 bits)