RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16062
(396 letters)
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId:
9913]}
Length = 234
Score = 126 bits (318), Expect = 6e-35
Identities = 65/212 (30%), Positives = 111/212 (52%), Gaps = 10/212 (4%)
Query: 1 MLMFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEM 60
+FFG + ++ + P+ +Q L FG ++T++ GHISGAH+NP+V+ + +
Sbjct: 17 FYVFFGLGASLRW-APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQ 75
Query: 61 ITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQAF 120
++++ + Y+ +Q+LG + G ++ +TP + ++ L G QA
Sbjct: 76 MSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVG---------QAT 126
Query: 121 LAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSLAP 180
+ E F T V +D R SVA+ + L + YTGA MNPARS AP
Sbjct: 127 IVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAP 186
Query: 181 AIYSNVWTAHWIYWVAPILGSIVSTLLYKYVF 212
AI + +T HW+YWV P++G+ + +LLY ++
Sbjct: 187 AILTRNFTNHWVYWVGPVIGAGLGSLLYDFLL 218
Score = 72.4 bits (177), Expect = 3e-15
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 253 CLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSV 312
E + +FFG + ++ + P+ +Q L FG ++T++ GHISGAH+NP+V
Sbjct: 8 ICAEFFASLFYVFFGLGASLRW-APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAV 66
Query: 313 SVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGFCTTVPH 372
+ + + +++L + Y+ +Q+LG + G ++ +TP + + L G
Sbjct: 67 TFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVG--- 123
Query: 373 ASLTTVQAFLAEFFSTSLLVFTCC 396
QA + E F T V
Sbjct: 124 ------QATIVEIFLTLQFVLCIF 141
Score = 49.3 bits (117), Expect = 2e-07
Identities = 49/239 (20%), Positives = 87/239 (36%), Gaps = 25/239 (10%)
Query: 113 SLTTVQAFLAEFFSTSLLVFTCCG--VWDSRNAKFGDSVAIKFALVIALCSITVGPYTGA 170
S + +A AEFF++ VF G + + VA+ F L +A VG +GA
Sbjct: 1 SASFWRAICAEFFASLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGA 60
Query: 171 SMNPARSLAPAIYSNV-WTAHWIYWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPAD 229
+NPA + A + S + Y VA +LG++ + V G L P
Sbjct: 61 HVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP-- 118
Query: 230 VETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMF 289
V + + + E+ T + + + + L
Sbjct: 119 ----------------GVSVGQATIVEIFLTLQFVLCIFATYDE---RRNGRLGSVALAV 159
Query: 290 GFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNII 348
GF ++ + +GA +NP+ S + +L +Y V+G +G L + +
Sbjct: 160 GFSLTLGHLFGMYYTGAGMNPARSFAPAIL-TRNFTNHWVYWVGPVIGAGLGSLLYDFL 217
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Length = 249
Score = 126 bits (316), Expect = 2e-34
Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 17/220 (7%)
Query: 1 MLMFFGCMSLVQGFSQTP--------IPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVS 52
+ +F S + +++ L FG ++T+ GHISGAHLNP+V+
Sbjct: 23 LFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT 82
Query: 53 VSAFLLEMITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHA 112
+ L I+++ ++Y+ +Q +G ++ +++ IT N
Sbjct: 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP---------DNSLGLNALAP 133
Query: 113 SLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASM 172
+ + Q E T LV D R G S + +AL + YTG +
Sbjct: 134 GVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGI 193
Query: 173 NPARSLAPAIYSNVWTAHWIYWVAPILGSIVSTLLYKYVF 212
NPARS ++ ++ + HWI+WV P +G+ ++ L+Y ++
Sbjct: 194 NPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFIL 233
Score = 70.6 bits (172), Expect = 2e-14
Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 17/152 (11%)
Query: 253 CLGEVLGTSMLMFFGCMSLVQGFSQTP--------IPSMQPGLMFGFVVSTVICIFGHIS 304
+ E L + +F S + +++ L FG ++T+ GHIS
Sbjct: 14 VVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHIS 73
Query: 305 GAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSN 364
GAHLNP+V++ L I++L ++Y+ +Q +G ++ +++ IT N
Sbjct: 74 GAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP---------DN 124
Query: 365 GFCTTVPHASLTTVQAFLAEFFSTSLLVFTCC 396
+ + Q E T LV
Sbjct: 125 SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVL 156
Score = 57.5 bits (138), Expect = 4e-10
Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 34/243 (13%)
Query: 118 QAFLAEFFSTSLLVFTCCGVWDSRNAKFGDS-----------VAIKFALVIALCSITVGP 166
+A +AEF + L +F G + + V++ F L IA + +VG
Sbjct: 12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71
Query: 167 YTGASMNPARSLAPAIYSNVWTAHWI-YWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQL 225
+GA +NPA +L + + I Y +A +G+IV+T + + S D L
Sbjct: 72 ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131
Query: 226 SPADVETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQP 285
+P V + E++GT L+ C+ + + P
Sbjct: 132 AP------------------GVNSGQGLGIEIIGTLQLVL--CVLATTDRRRRDLGGSGP 171
Query: 286 GLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLV 345
GF V+ + +G +NP+ S + ++ + ++ +G + V +
Sbjct: 172 L-AIGFSVALGHLLAIDYTGCGINPARSFGSSVI-THNFQDHWIFWVGPFIGAALAVLIY 229
Query: 346 NII 348
+ I
Sbjct: 230 DFI 232
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Length = 231
Score = 121 bits (305), Expect = 4e-33
Identities = 63/218 (28%), Positives = 100/218 (45%), Gaps = 6/218 (2%)
Query: 1 MLMFFGCMSLVQ--GFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLL 58
L+F GC S V GF + I L FG V T+ GHISG H NP+V++ +
Sbjct: 14 WLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAG 73
Query: 59 EMITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSNGFCTTVPHASLTTVQ 118
E+V YV +QV+G ++ L+ +I + F +++G ++ + +
Sbjct: 74 GRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 133
Query: 119 AFLAEFFSTSLLVFTCCGVWDSRNAKFGDSVAIKFALVIALCSITVGPYTGASMNPARSL 178
A + E ++ + G D +AI + L + P T S+NPARS
Sbjct: 134 ALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGL--ALTLIHLISIPVTNTSVNPARST 191
Query: 179 APAIYSNVWT--AHWIYWVAPILGSIVSTLLYKYVFSK 214
A AI+ W W +WV PI+G I+ L+Y+ + K
Sbjct: 192 AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEK 229
Score = 75.6 bits (185), Expect = 3e-16
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 2/150 (1%)
Query: 249 LLELCLGEVLGTSMLMFFGCMSLVQ--GFSQTPIPSMQPGLMFGFVVSTVICIFGHISGA 306
+ E GT L+F GC S V GF + I L FG V T+ GHISG
Sbjct: 1 MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGG 60
Query: 307 HLNPSVSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITPEEILFPVGSAGLSNGF 366
H NP+V++ + E+V YV +QV+G ++ L+ +I + F ++G ++
Sbjct: 61 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNG 120
Query: 367 CTTVPHASLTTVQAFLAEFFSTSLLVFTCC 396
+ + A + E ++ +
Sbjct: 121 YGEHSPGGYSMLSALVVELVLSAGFLLVIH 150
Score = 53.6 bits (128), Expect = 6e-09
Identities = 41/242 (16%), Positives = 84/242 (34%), Gaps = 21/242 (8%)
Query: 118 QAFLAEFFSTSLLVFTCCG--VWDSRNAKFGDS---VAIKFALVIALCSITVGPYTGASM 172
+ AE F T LVF CG V + + G VA+ F L + + VG +G
Sbjct: 3 RKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHF 62
Query: 173 NPARSLAPAIYSNVWTAHWIYWVAP-ILGSIVSTLLYKYVFSKDHDGKNRPEQLSPADVE 231
NPA ++ + +V ++G IV+ L + S +
Sbjct: 63 NPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYG 122
Query: 232 TSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMFGF 291
+ L +++ G + ++ G + P+ + G
Sbjct: 123 EHSPGG--------------YSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGL 168
Query: 292 VVSTVICIFGHISGAHLNPSVSVS-AFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITP 350
++ + I ++ +NP+ S + A + +L + ++G +IG + +
Sbjct: 169 ALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLE 228
Query: 351 EE 352
+
Sbjct: 229 KR 230
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF
{Escherichia coli [TaxId: 562]}
Length = 254
Score = 117 bits (295), Expect = 2e-31
Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 24/238 (10%)
Query: 1 MLMFFGCMSLVQ-GFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPSVSVSAFLLE 59
+L+FFG + + + +++G V+ I + +SGAHLNP+V+++ +L
Sbjct: 15 LLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFA 74
Query: 60 MITMVELVLYVCSQVLGCLIGVGLVNIITPEEILFPVSSAGLSN---------GFCTTVP 110
+++ ++ SQV G LV + + + G +T P
Sbjct: 75 CFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYP 134
Query: 111 HASLTTVQAFLAEFFSTSLLVFTCCGVWDSRNAKF-GDSVAIKFALVIALCSITVGPYTG 169
+ + VQAF E T++L+ + D N G + L+IA+ ++GP TG
Sbjct: 135 NPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTG 194
Query: 170 ASMNPARSLAPAIYS-------------NVWTAHWIYWVAPILGSIVSTLLYKYVFSK 214
+MNPAR P +++ + PI+G+IV Y+ + +
Sbjct: 195 FAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGR 252
Score = 73.7 bits (180), Expect = 1e-15
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 253 CLGEVLGTSMLMFFGCMSLVQ-GFSQTPIPSMQPGLMFGFVVSTVICIFGHISGAHLNPS 311
C+ E LGT +L+FFG + + + +++G V+ I + +SGAHLNP+
Sbjct: 6 CIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPA 65
Query: 312 VSVSAFLLEMITMLELVLYVCSQVLGCLIGVGLVNIITP---------EEILFPVGSAGL 362
V+++ +L +++ ++ SQV G LV + I+ +
Sbjct: 66 VTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVD 125
Query: 363 SNGFCTTVPHASLTTVQAFLAEFFSTSLLVFTCC 396
G +T P+ + VQAF E T++L+
Sbjct: 126 LAGTFSTYPNPHINFVQAFAVEMVITAILMGLIL 159
Score = 61.3 bits (148), Expect = 2e-11
Identities = 39/251 (15%), Positives = 91/251 (36%), Gaps = 19/251 (7%)
Query: 115 TTVQAFLAEFFSTSLLVFTCCGV---WDSRNAKFGD-SVAIKFALVIALCSITVGPYTGA 170
T +AEF T LL+F G A FG +++ + L +A+ +GA
Sbjct: 1 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGA 60
Query: 171 SMNPARSLAPAIYSNVWTAHWI-YWVAPILGSIVSTLLYKYVFSKDHDGKNRPEQLSPAD 229
+NPA ++A +++ I + V+ + G+ + L ++ + +
Sbjct: 61 HLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGS 120
Query: 230 VETSLGQIKPPRFGKRAVKLLELCLGEVLGTSMLMFFGCMSLVQGFSQTPIPSMQPGLMF 289
VE+ + + ++ E++ T++LM G L+
Sbjct: 121 VESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNG--VPRGPLAPLLI 178
Query: 290 GFVVSTVICIFGHISGAHLNPSVSVSAFLLEMITMLE------------LVLYVCSQVLG 337
G +++ + G ++G +NP+ + + ++ + ++G
Sbjct: 179 GLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVG 238
Query: 338 CLIGVGLVNII 348
++G +
Sbjct: 239 AIVGAFAYRKL 249
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.140 0.434
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,433,915
Number of extensions: 64615
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 18
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.1 bits)