Query psy16064
Match_columns 515
No_of_seqs 149 out of 1535
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:54:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02121 Na_Pro_sym sodium/pr 100.0 3.7E-64 8.1E-69 544.3 45.4 411 15-490 1-474 (487)
2 PRK09442 panF sodium/panthothe 100.0 2.5E-63 5.5E-68 537.5 47.8 413 13-494 1-480 (483)
3 PRK15419 proline:sodium sympor 100.0 1.4E-63 3.1E-68 541.6 45.4 414 13-490 3-479 (502)
4 PRK12488 acetate permease; Pro 100.0 2.8E-63 6E-68 543.9 45.6 432 11-490 28-524 (549)
5 PRK10484 putative transporter; 100.0 8.2E-63 1.8E-67 538.0 47.5 416 16-493 2-490 (523)
6 PRK09395 actP acetate permease 100.0 9.3E-63 2E-67 540.4 46.1 447 12-510 31-546 (551)
7 TIGR02711 symport_actP cation/ 100.0 1.7E-61 3.6E-66 529.8 45.1 429 10-487 27-521 (549)
8 TIGR02119 panF sodium/pantothe 100.0 2.5E-59 5.5E-64 504.8 46.2 403 16-486 2-470 (471)
9 TIGR03648 Na_symport_lg probab 100.0 5.1E-60 1.1E-64 519.0 40.8 426 18-490 2-541 (552)
10 COG4147 DhlC Predicted symport 100.0 9.5E-60 2.1E-64 484.4 28.6 443 13-503 4-525 (529)
11 COG0591 PutP Na+/proline sympo 100.0 2.8E-57 6.1E-62 490.1 45.4 418 14-487 2-486 (493)
12 COG4145 PanF Na+/panthothenate 100.0 2.1E-55 4.6E-60 438.6 35.2 404 18-489 4-472 (473)
13 PF00474 SSF: Sodium:solute sy 100.0 4.6E-56 1E-60 470.5 31.8 337 47-431 1-406 (406)
14 TIGR00813 sss transporter, SSS 100.0 8.6E-54 1.9E-58 453.6 37.7 338 50-431 1-407 (407)
15 KOG3761|consensus 100.0 1.4E-50 3.1E-55 397.9 5.8 450 14-507 3-530 (591)
16 KOG2349|consensus 100.0 3.8E-48 8.3E-53 414.1 15.4 379 15-439 8-453 (585)
17 COG4146 Predicted symporter [G 100.0 2.5E-41 5.5E-46 337.1 22.5 413 15-489 3-487 (571)
18 KOG2348|consensus 99.9 2.1E-27 4.4E-32 242.4 8.8 442 7-498 4-529 (667)
19 PRK00701 manganese transport p 98.5 0.0015 3.2E-08 70.5 36.3 88 65-153 45-132 (439)
20 PF01566 Nramp: Natural resist 98.5 0.00025 5.4E-09 74.4 29.6 221 79-354 7-287 (358)
21 TIGR00814 stp serine transport 98.4 0.00059 1.3E-08 72.6 29.5 282 62-395 11-354 (397)
22 TIGR00912 2A0309 spore germina 98.1 0.0074 1.6E-07 63.0 30.1 148 53-243 2-151 (359)
23 TIGR01197 nramp NRAMP (natural 98.1 0.023 5E-07 60.4 33.8 88 65-153 15-102 (390)
24 PF03845 Spore_permease: Spore 98.0 0.0095 2.1E-07 61.3 28.5 145 55-242 3-148 (320)
25 PF03222 Trp_Tyr_perm: Tryptop 98.0 0.011 2.3E-07 63.1 28.8 173 59-276 8-234 (394)
26 COG1914 MntH Mn2+ and Fe2+ tra 97.9 0.048 1E-06 58.3 32.9 119 66-227 29-147 (416)
27 TIGR00909 2A0306 amino acid tr 97.9 0.015 3.2E-07 62.2 29.6 101 51-151 2-103 (429)
28 PRK11017 codB cytosine permeas 97.9 0.043 9.3E-07 58.6 32.2 39 115-153 71-109 (404)
29 PRK15132 tyrosine transporter 97.8 0.071 1.5E-06 56.9 32.4 178 59-277 8-232 (403)
30 TIGR00905 2A0302 transporter, 97.8 0.085 1.8E-06 57.4 34.9 86 51-137 6-95 (473)
31 PRK11021 putative transporter; 97.7 0.1 2.2E-06 55.5 31.7 83 55-137 2-85 (410)
32 PRK15049 L-asparagine permease 97.7 0.14 3E-06 56.2 35.2 90 51-140 27-117 (499)
33 TIGR00837 araaP aromatic amino 97.6 0.051 1.1E-06 57.2 27.4 67 72-139 14-83 (381)
34 TIGR00796 livcs branched-chain 97.4 0.23 5.1E-06 52.6 30.4 145 249-416 204-353 (378)
35 PRK10644 arginine:agmatin anti 97.4 0.27 5.8E-06 53.0 32.9 85 50-135 6-91 (445)
36 PF01235 Na_Ala_symp: Sodium:a 97.4 0.048 1E-06 58.3 23.6 143 51-238 16-168 (416)
37 TIGR01773 GABAperm gamma-amino 97.4 0.23 5E-06 53.6 29.3 104 50-153 10-114 (452)
38 PRK10249 phenylalanine transpo 97.4 0.15 3.3E-06 55.2 27.8 103 51-153 20-123 (458)
39 TIGR03810 arg_ornith_anti argi 97.3 0.35 7.6E-06 52.5 35.4 85 52-136 1-88 (468)
40 PRK10238 aromatic amino acid t 97.3 0.37 8.1E-06 52.2 31.7 104 50-153 10-114 (456)
41 COG1457 CodB Purine-cytosine p 97.3 0.4 8.8E-06 51.6 32.3 104 95-241 59-164 (442)
42 PRK10655 potE putrescine trans 97.2 0.44 9.6E-06 51.1 31.2 85 51-136 5-90 (438)
43 PF05525 Branch_AA_trans: Bran 97.2 0.059 1.3E-06 57.8 21.4 165 249-436 210-384 (427)
44 PRK11375 allantoin permease; P 97.2 0.53 1.2E-05 51.6 33.9 101 51-153 24-128 (484)
45 PRK10580 proY putative proline 97.2 0.5 1.1E-05 51.1 30.6 102 51-152 8-110 (457)
46 TIGR00835 agcS amino acid carr 97.2 0.48 1E-05 50.9 32.5 142 52-237 45-196 (425)
47 TIGR02358 thia_cytX probable h 97.1 0.55 1.2E-05 49.9 30.6 39 115-153 58-96 (386)
48 PF02028 BCCT: BCCT family tra 97.1 0.36 7.8E-06 52.8 26.5 49 302-350 375-424 (485)
49 PRK13629 threonine/serine tran 97.1 0.62 1.4E-05 50.2 30.5 78 61-139 26-106 (443)
50 TIGR00800 ncs1 NCS1 nucleoside 97.0 0.72 1.6E-05 49.8 29.0 101 51-153 11-114 (442)
51 PRK10483 tryptophan permease; 97.0 0.69 1.5E-05 49.6 32.3 172 60-276 17-242 (414)
52 COG1115 AlsT Na+/alanine sympo 97.0 0.73 1.6E-05 49.4 30.8 140 49-232 58-208 (452)
53 COG3949 Uncharacterized membra 96.9 0.47 1E-05 48.9 24.0 107 83-231 34-140 (349)
54 PRK10435 cadB lysine/cadaverin 96.9 0.81 1.8E-05 49.2 33.9 82 51-134 4-86 (435)
55 PRK11387 S-methylmethionine tr 96.9 0.96 2.1E-05 49.2 33.7 95 51-145 13-109 (471)
56 PRK11049 D-alanine/D-serine/gl 96.9 0.98 2.1E-05 49.1 30.8 92 50-141 18-110 (469)
57 TIGR00908 2A0305 ethanolamine 96.8 1.1 2.3E-05 48.3 31.0 102 51-153 6-109 (442)
58 TIGR00906 2A0303 cationic amin 96.7 1.6 3.4E-05 48.8 30.8 96 51-146 27-124 (557)
59 PRK10746 putative transport pr 96.6 1.4 3E-05 47.9 32.6 103 51-153 9-112 (461)
60 COG1113 AnsP Gamma-aminobutyra 96.6 0.5 1.1E-05 50.7 22.4 323 51-401 12-371 (462)
61 TIGR00911 2A0308 L-type amino 96.6 1.6 3.4E-05 47.9 30.5 84 51-136 41-129 (501)
62 PRK15433 branched-chain amino 96.3 2.2 4.8E-05 46.0 28.5 163 249-435 214-386 (439)
63 PRK09950 putative transporter; 96.1 2.9 6.3E-05 46.0 32.4 48 303-350 386-434 (506)
64 PRK09664 tryptophan permease T 96.1 2.6 5.6E-05 45.2 33.9 140 59-242 14-161 (415)
65 PF02133 Transp_cyt_pur: Perme 96.0 1.2 2.7E-05 47.7 21.9 99 51-153 6-109 (440)
66 PF13520 AA_permease_2: Amino 96.0 2.7 5.9E-05 44.6 30.1 67 79-145 24-92 (426)
67 TIGR00913 2A0310 amino acid pe 95.9 3.3 7.1E-05 44.9 33.4 101 52-152 2-105 (478)
68 COG1292 BetT Choline-glycine b 95.8 4 8.7E-05 44.8 28.5 103 246-350 334-437 (537)
69 PRK09928 choline transport pro 95.6 5.4 0.00012 45.3 30.2 48 303-350 393-441 (679)
70 PRK11357 frlA putative fructos 95.3 5 0.00011 43.1 30.0 84 51-135 7-94 (445)
71 COG0814 SdaC Amino acid permea 95.2 5.4 0.00012 42.9 33.1 93 60-153 15-110 (415)
72 KOG1303|consensus 94.6 8 0.00017 41.9 24.2 84 50-134 34-124 (437)
73 PRK10197 gamma-aminobutyrate t 94.6 8.1 0.00018 41.7 27.9 86 65-150 5-91 (446)
74 TIGR00842 bcct choline/carniti 94.2 9.9 0.00021 41.3 24.8 46 305-350 342-388 (453)
75 TIGR00930 2a30 K-Cl cotranspor 93.8 19 0.00041 43.0 33.6 91 50-141 74-169 (953)
76 PRK03356 L-carnitine/gamma-but 91.9 23 0.00051 39.0 32.1 48 303-350 389-437 (504)
77 PLN03074 auxin influx permease 91.4 25 0.00054 38.5 23.6 29 253-281 259-287 (473)
78 PTZ00206 amino acid transporte 89.9 33 0.00072 37.4 28.9 83 58-142 64-148 (467)
79 COG1114 BrnQ Branched-chain am 88.6 38 0.00083 36.3 25.1 121 249-392 212-337 (431)
80 PRK10836 lysine transporter; P 88.4 42 0.00092 36.6 35.6 92 43-135 7-100 (489)
81 KOG1287|consensus 87.6 32 0.00069 37.6 17.2 145 51-241 11-166 (479)
82 TIGR03428 ureacarb_perm permea 82.9 75 0.0016 34.4 30.1 90 51-140 12-103 (475)
83 KOG1286|consensus 81.2 58 0.0013 36.4 16.2 103 51-153 29-134 (554)
84 PRK15015 carbon starvation pro 76.0 32 0.0007 39.0 12.0 126 9-139 29-169 (701)
85 PF01490 Aa_trans: Transmembra 75.7 0.22 4.9E-06 52.4 -4.5 84 52-136 1-89 (409)
86 PF02554 CstA: Carbon starvati 75.4 1.1E+02 0.0024 32.4 15.2 118 17-139 7-138 (376)
87 COG0591 PutP Na+/proline sympo 73.1 68 0.0015 35.3 13.9 120 242-368 254-377 (493)
88 COG0833 LysP Amino acid transp 68.6 2E+02 0.0043 32.1 24.7 101 51-153 43-147 (541)
89 PF00324 AA_permease: Amino ac 67.0 41 0.0009 36.4 10.6 88 66-153 9-98 (478)
90 TIGR03813 put_Glu_GABA_T putat 64.8 2.1E+02 0.0045 31.0 35.6 69 72-141 18-88 (474)
91 KOG1304|consensus 57.0 2.9E+02 0.0063 30.1 18.7 41 204-244 177-217 (449)
92 COG1953 FUI1 Cytosine/uracil/t 55.2 3.3E+02 0.0071 30.1 29.3 372 50-487 37-490 (497)
93 COG0733 Na+-dependent transpor 50.1 3.7E+02 0.008 29.2 29.3 101 307-417 290-395 (439)
94 PF05545 FixQ: Cbb3-type cytoc 49.3 18 0.00038 26.5 2.7 35 12-46 6-40 (49)
95 TIGR00907 2A0304 amino acid pe 48.6 3.8E+02 0.0083 28.9 27.6 32 96-127 58-90 (482)
96 COG1966 CstA Carbon starvation 41.8 3.9E+02 0.0084 29.9 12.5 92 42-138 44-137 (575)
97 PF07907 YibE_F: YibE/F-like p 38.4 4.1E+02 0.009 26.4 16.8 31 336-370 141-171 (244)
98 COG0531 PotE Amino acid transp 33.4 6E+02 0.013 26.8 31.1 91 51-144 11-105 (466)
99 COG0534 NorM Na+-driven multid 30.8 6.2E+02 0.014 27.3 12.2 37 245-281 78-114 (455)
100 PRK12895 ubiA prenyltransferas 30.3 2.5E+02 0.0055 28.6 8.5 27 409-436 119-146 (286)
101 PLN02776 prenyltransferase 28.8 5E+02 0.011 27.2 10.5 17 414-431 118-134 (341)
102 TIGR01167 LPXTG_anchor LPXTG-m 28.8 80 0.0017 20.8 3.2 16 6-21 3-18 (34)
103 TIGR00910 2A0307_GadC glutamat 24.9 9.4E+02 0.02 26.3 35.9 78 52-133 4-84 (507)
104 cd01324 cbb3_Oxidase_CcoQ Cyto 23.5 1.2E+02 0.0026 22.3 3.4 27 14-40 9-35 (48)
105 PRK15238 inner membrane transp 20.1 1.1E+03 0.024 25.5 30.0 81 51-134 6-89 (496)
No 1
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=100.00 E-value=3.7e-64 Score=544.30 Aligned_cols=411 Identities=22% Similarity=0.272 Sum_probs=356.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHH
Q psy16064 15 VYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGY 94 (515)
Q Consensus 15 ~~~~i~i~~y~~~~l~ig~~~~r~~~~~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~ 94 (515)
.|+++++++|+++++++|+|.+||.| |.|||++|||++|+|+.++|+.||++|+++++|.||.+|++|+++.|..+++
T Consensus 1 ~~~~~~~~~y~~~~l~iG~~~~r~~~--s~~df~lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~ 78 (487)
T TIGR02121 1 TEILITFGVYLIIMLLIGFYAYKKTT--NLSDYVLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGL 78 (487)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccC--chHHHeeeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHH
Confidence 37889999999999999999999887 7999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHH-----hcCCCCchHHHHHhhCccc---hhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhh
Q psy16064 95 SLTLVAGALIFAKPMR-----DAGYITMLDPFQKTYGRRI---GGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPAL 166 (515)
Q Consensus 95 ~~~~~l~~~~~a~~~r-----r~~~~T~~e~~~~Rfg~~~---~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~ 166 (515)
.++.++.+++++||+| |++..|+||++++|||++. |.+.++..++..++|++.|+.+.|
T Consensus 79 ~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~------------- 145 (487)
T TIGR02121 79 TIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGG------------- 145 (487)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 8888877889999998 6789999999999999754 445666666677789999999887
Q ss_pred hhhhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH--
Q psy16064 167 LGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL-- 244 (515)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~-- 244 (515)
.+++.++|+|++.++++..+++++||.+||+|+|+|||++|+++|+++.
T Consensus 146 -----------------------------~~l~~~~gi~~~~~iii~~~i~~~Yt~~GGl~av~~TD~iQ~~i~~~~~~~ 196 (487)
T TIGR02121 146 -----------------------------KLFESTFGLDYKTGLLIGALIIVIYTFFGGFLAVSWTDFVQGLLMFFALVL 196 (487)
T ss_pred -----------------------------HHHHHHhCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6888899999999999999999999999999999999999999998765
Q ss_pred ----------------------------------------------------HHHHHHhcCCChHHHHHHHHHHHHHHHH
Q psy16064 245 ----------------------------------------------------SYFQRILSLKSSTDAVNVSLISATACFF 272 (515)
Q Consensus 245 ----------------------------------------------------~~~qr~~aak~~~~ar~~~~~~~~~~~~ 272 (515)
+++||++++||+|++||+..++..+..+
T Consensus 197 v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~k~~~~~~~~~~~~~~~ 276 (487)
T TIGR02121 197 VPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAWGLGYFGQPHIIVRFMAIRSHKELPKARRIGMSWMIL 276 (487)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHHHHHhccchHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999988766555
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHHhh
Q psy16064 273 IVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIY 352 (515)
Q Consensus 273 ~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~Di~ 352 (515)
..+...++|+.+....++. |+ .+..++|+++|.++++++||++.|+++++++||.|||+||.+|+.++.++||+|
T Consensus 277 ~~~~~~~~g~~g~~~~~~~----p~-~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~~~~Diy 351 (487)
T TIGR02121 277 SLLGAIAVGLTGIAYFNKN----PH-VELVDRETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLVSSSALTEDFY 351 (487)
T ss_pred HHHHHHHHHHHHHHHhccC----cc-ccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555667777776654321 11 123578999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCChHHHHHHHHHH
Q psy16064 353 HQSFRPKASEYELMWVLRLSILAASVISCSIALSGA-SIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIG 431 (515)
Q Consensus 353 ~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~-~i~~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga~~s~i~G 431 (515)
+++.||+++|||+++++|++++++++++..+++..+ ++.++...++...++.++|++++++|||| .|++|+++||++|
T Consensus 352 ~~~~~~~~s~~~~l~v~R~~~v~~~~~~~~~a~~~~~~i~~l~~~~~~~~~~~~~p~~llgl~w~r-~t~~ga~~g~i~G 430 (487)
T TIGR02121 352 KAFFKREASQKELVMVGRLSVLVIAIIAIILAMNPNSSILNLVGYAWAGFGAAFGPVVLFSLYWKR-MTRNGALAGMIIG 430 (487)
T ss_pred HHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 999999999999999999999999999999998765 57777777777677788999999999999 9999999999999
Q ss_pred HHHHHHhccCCCCCCccccCCCCccccccccchhhHHHHHHHHHHhhhhhccccccccc
Q psy16064 432 ILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEK 490 (515)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~~~~~ 490 (515)
+++.+.+... .+.. . ..+...+++.+|+++++++|++||++++|
T Consensus 431 ~~~~~~~~~~---------~~~~-----~-~~~~~~~g~~~~~~~~~~~s~~t~~~~~~ 474 (487)
T TIGR02121 431 AVTVIVWISK---------LGGS-----F-GLYEIVPGFIISSIVIVVVSKLTKAPPAA 474 (487)
T ss_pred HHHHHHHHHH---------hccc-----c-chhHhHHHHHHHHHHHHHHHhccCCCCHH
Confidence 9998776310 0100 0 01223468899999999999999988765
No 2
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=100.00 E-value=2.5e-63 Score=537.49 Aligned_cols=413 Identities=23% Similarity=0.275 Sum_probs=355.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhccCC-CChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHH
Q psy16064 13 IDVYGIAGILTFYSIVLVVGIWAGTKQKN-HGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAP 91 (515)
Q Consensus 13 ~~~~~~i~i~~y~~~~l~ig~~~~r~~~~-~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~ 91 (515)
+|+.+++++++|+++++++|+|.+||+|+ ++.|||++|||++|+|+.++|+.||++|+++++|.+|.+|++|+++.|..
T Consensus 1 ~~~~~~~~i~~y~~~~~~ig~~~~r~~~~~~~~~dy~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~ 80 (483)
T PRK09442 1 MNLEVILPLVIYLVLVFGISVYAYRKRQAGDFLNEYFLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLA 80 (483)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhcccCCCcccceeeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHH
Confidence 37788999999999999999999999875 24699999999999999999999999999999999999999999876654
Q ss_pred HHHHHHHHHHHHHHHHHH----HhcCCCCchHHHHHhhCccc-hhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhh
Q psy16064 92 VGYSLTLVAGALIFAKPM----RDAGYITMLDPFQKTYGRRI-GGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPAL 166 (515)
Q Consensus 92 ~g~~~~~~l~~~~~a~~~----rr~~~~T~~e~~~~Rfg~~~-~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~ 166 (515)
........+...+++||+ ||.+..|++|++++|||++. +.+.++..++..++|++.|+++.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g------------- 147 (483)
T PRK09442 81 MIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGA------------- 147 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 332222222333455555 99999999999999999874 666777777778899999999988
Q ss_pred hhhhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH--
Q psy16064 167 LGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL-- 244 (515)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~-- 244 (515)
.+++.++|+|++.++++..+++++||.+||+|+++|||++|+++|+++.
T Consensus 148 -----------------------------~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~iQ~~i~~~~~~v 198 (483)
T PRK09442 148 -----------------------------RLLETATGISYETGLLIFGITVALYTAFGGFRAVVLTDALQGIVMLVGTVI 198 (483)
T ss_pred -----------------------------HHHHHHhCCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 6888899999999999999999999999999999999999999988875
Q ss_pred --------------------------------------------------------HHHHHHhcCCChHHHHHHHHHHHH
Q psy16064 245 --------------------------------------------------------SYFQRILSLKSSTDAVNVSLISAT 268 (515)
Q Consensus 245 --------------------------------------------------------~~~qr~~aak~~~~ar~~~~~~~~ 268 (515)
+.+||++++||+|++||+..+++.
T Consensus 199 i~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~~~a~~~~~~~~~ 278 (483)
T PRK09442 199 LLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKDSKALHRGIIIGTI 278 (483)
T ss_pred HHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 688999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHH
Q psy16064 269 ACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFT 348 (515)
Q Consensus 269 ~~~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~ 348 (515)
+..++.++..++|+.++...|+ ..++|+++|.++.+.+|+++.++++++++||.|||+||.+++.++.++
T Consensus 279 ~~~~~~~~~~~~G~~~~~~~p~----------~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l~~~ss~~~ 348 (483)
T PRK09442 279 VVGFLMFGMHLAGALGRAVLPD----------LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQSSSTII 348 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC----------CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999998877642 246899999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCC--CChHHHHHHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHhhhhhhHHHHHHHhhcCCCCChHHHH
Q psy16064 349 RNIYHQSFRPK--ASEYELMWVLRLSILAASVISCSIALSGASIY-YLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCL 425 (515)
Q Consensus 349 ~Di~~~~~~~~--~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~~i~-~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga~ 425 (515)
||+|++ ++|+ .+|||+++++|++++++++++..+++..+++. .+...+++...++++||+++++|||| .|++|++
T Consensus 349 ~Di~~~-~~~~~~~s~~~~~~v~r~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~lgl~w~r-~~~~ga~ 426 (483)
T PRK09442 349 KDLYLN-IRPDQIANEKKLKRISLIITLILGLLVLLAALKPPDMIIWLNLFAFGGLEAVFLWPIVLGLYWER-ANATGAL 426 (483)
T ss_pred HHHHHH-hccCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHH
Confidence 999999 7887 89999999999999999999999999887754 33344555555778899999999999 9999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccCCCCccccccccchhhHHHHHHHHHHhhhhhccccccccccccc
Q psy16064 426 SSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLS 494 (515)
Q Consensus 426 ~s~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~~~~~~~~~ 494 (515)
+|+++|+++...+... + + .+ + .++...+++++|+++++++|+++|+++||.+++
T Consensus 427 ~~~i~G~~~~~~~~~~--~-~----~~-~-------~~~~~~~~~~~s~i~~~~vs~~~~~~~~~~~~~ 480 (483)
T PRK09442 427 ASMIVGLVSYLLLATF--G-I----KI-F-------GFHPIVPSLLLSLLAFLIGNLFGTSAIQATVLS 480 (483)
T ss_pred HHHHHHHHHHHHHHHh--c-c----cc-c-------ccchHHHHHHHHHHHHHHHHhccCCCChhhhhc
Confidence 9999999998887421 0 0 01 1 112345689999999999999999999988776
No 3
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=100.00 E-value=1.4e-63 Score=541.56 Aligned_cols=414 Identities=21% Similarity=0.259 Sum_probs=348.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHH
Q psy16064 13 IDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPV 92 (515)
Q Consensus 13 ~~~~~~i~i~~y~~~~l~ig~~~~r~~~~~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~ 92 (515)
.+.++++++++|+++++++|+|.+||+| |.|||++|||++|+|..++|+.||++|+++++|.||.+|++|+++.|..+
T Consensus 3 ~~~~~~~~~~~y~~~~l~iG~~~~r~~~--s~~dy~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~ 80 (502)
T PRK15419 3 ISTPMLVTFCVYIFGMILIGFIAWRSTK--NFDDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAI 80 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCC--ChhHheeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHH
Confidence 5678899999999999999999999877 79999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHH-----hcCCCCchHHHHHhhCccc---hhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhh
Q psy16064 93 GYSLTLVAGALIFAKPMR-----DAGYITMLDPFQKTYGRRI---GGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLP 164 (515)
Q Consensus 93 g~~~~~~l~~~~~a~~~r-----r~~~~T~~e~~~~Rfg~~~---~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp 164 (515)
++.++.++...+++||+| |.+..|+|||+++|||++. |.+.++..++..++|++.|+++.+
T Consensus 81 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~----------- 149 (502)
T PRK15419 81 GLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGA----------- 149 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 888887777777788775 5699999999999999753 455667777778899999999887
Q ss_pred hhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH
Q psy16064 165 ALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL 244 (515)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~ 244 (515)
.+++.++|+|++.++++.++++++||.+||+|||+|||++|+++|+++.
T Consensus 150 -------------------------------~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl~aV~~TD~iQ~~imi~g~ 198 (502)
T PRK15419 150 -------------------------------RLFESTFGMSYETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFAL 198 (502)
T ss_pred -------------------------------HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 6888899999999999999999999999999999999999999988765
Q ss_pred ------------------------------------------------------HHHHHHhcCCChHHHHHHHHHHHHHH
Q psy16064 245 ------------------------------------------------------SYFQRILSLKSSTDAVNVSLISATAC 270 (515)
Q Consensus 245 ------------------------------------------------------~~~qr~~aak~~~~ar~~~~~~~~~~ 270 (515)
|++||++++||+|+.|++......+.
T Consensus 199 i~~~~~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aak~~~~~~~a~~~~~~~~ 278 (502)
T PRK15419 199 ILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMTWM 278 (502)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCccccCcccCCCHHHHHHHHHHHHHHcCChHHHHhheecCChHHHHHHHHHHHHHH
Confidence 67899999999987655544333333
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHH
Q psy16064 271 FFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRN 350 (515)
Q Consensus 271 ~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~D 350 (515)
.+......++|+.++...+.. +..+ +....|+|+++|.++.+.+|+++.|+++++++||.|||+||.+|+.|+.++||
T Consensus 279 ~~~~~~~~~ig~~~~~~~~~~-p~~~-~~~~~~~d~~~~~l~~~~lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~~~~D 356 (502)
T PRK15419 279 ILCLAGAVAVGFFGIAYFNEH-PAVA-GAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITED 356 (502)
T ss_pred HHHHHHHHHHHHHHHHHhccC-cccc-cccCCCcchHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556777776654321 0000 01124789999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCChHHHHHHHH
Q psy16064 351 IYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGA-SIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVV 429 (515)
Q Consensus 351 i~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~-~i~~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga~~s~i 429 (515)
+|+++.||+.+|||.++++|+++++++++++.+++..+ ++.++...++...++.+.|++++++|||| .|++|+++|++
T Consensus 357 iy~~~~~~~~s~~~~l~~~Ri~~v~~~~~a~~~a~~~~~~i~~l~~~~~~~~~~~~~p~~llgl~wkr-~t~~ga~~g~i 435 (502)
T PRK15419 357 LYKAFLRKHASQKELVWVGRVMVLVVALVAIALAANPENRVLGLVSYAWAGFGAAFGPVVLFSVMWSR-MTRNGALAGMI 435 (502)
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHH
Confidence 99999999999999999999999999999999998765 47777777776666778888899999999 99999999999
Q ss_pred HHHHHHHHhccCCCCCCccccCCCCccccccccchhhHHHHHHHHHHhhhhhccccccccc
Q psy16064 430 IGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEK 490 (515)
Q Consensus 430 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~~~~~ 490 (515)
+|.++.+.+... +.. . ++....++.+|+++.+++|++||++++|
T Consensus 436 ~G~~~~~~~~~~----------~~~------~-~~~~~~~~~~~~~~~v~~sl~t~~~~~~ 479 (502)
T PRK15419 436 IGALTVIVWKQF----------GWL------G-LYEIIPGFIFGSIGIVVFSLLGKAPSAA 479 (502)
T ss_pred HHHHHHHHHHHh----------hhc------c-hhHhHHHHHHHHHHHHHHHhccCCCCHH
Confidence 999998876321 101 0 1223458899999999999999887654
No 4
>PRK12488 acetate permease; Provisional
Probab=100.00 E-value=2.8e-63 Score=543.86 Aligned_cols=432 Identities=15% Similarity=0.186 Sum_probs=365.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHH
Q psy16064 11 RMIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQA 90 (515)
Q Consensus 11 ~~~~~~~~i~i~~y~~~~l~ig~~~~r~~~~~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~ 90 (515)
..+++.+++++++|+++++++|+|.+||+| |.|||++|||++|+|..++++.||++|+.+|+|.+|.+|++|+++.|+
T Consensus 28 ~~~~~~~i~i~~~y~~~~l~ig~~~~r~~~--s~~df~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~ 105 (549)
T PRK12488 28 QPLNWTAIGMFMVFVLFTLGITRWAARRTR--SASDFYTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLY 105 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhheeeccC--ChHHHeeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHH
Confidence 455788888889999999999999999877 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCcc-chhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhh
Q psy16064 91 PVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRR-IGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGD 169 (515)
Q Consensus 91 ~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~-~~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~ 169 (515)
.+++.++.++..++++||+||.+..|+||++++|||++ .|.+.++..++..++|++.|+.+.|
T Consensus 106 ~~g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g---------------- 169 (549)
T PRK12488 106 ALGVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAG---------------- 169 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 99998999888889999999999999999999999976 7999999999999999999999988
Q ss_pred hhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH-----
Q psy16064 170 MLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL----- 244 (515)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~----- 244 (515)
.+++.++|+|++.++++.++++++||.+||||+++|||++|+++|+++.
T Consensus 170 --------------------------~il~~l~gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~~~~i~~~~ 223 (549)
T PRK12488 170 --------------------------KLIELLFGISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKAVLLLSGTSFMAF 223 (549)
T ss_pred --------------------------HHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888899999999999999999999999999999999999999988765
Q ss_pred -------------------------------------------------------HHHHHHhcCCChHHHHHHHHHHHHH
Q psy16064 245 -------------------------------------------------------SYFQRILSLKSSTDAVNVSLISATA 269 (515)
Q Consensus 245 -------------------------------------------------------~~~qr~~aak~~~~ar~~~~~~~~~ 269 (515)
|.+||++++||+|++||+..++..+
T Consensus 224 ~~l~~~g~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~lg~~~~p~~~qR~~aaks~k~ar~s~~~~~~~ 303 (549)
T PRK12488 224 MVLKHFGFSTEAMFASAVAVHAKGQAILAPGGLLSNPIDAISLGLGMMFGTAGLPHILMRFFTVSDAREARKSVLYATGF 303 (549)
T ss_pred HHHHHhCCCHHHHHHHHHhccccchhhcCCcccccCHHHHHHHHHHHHHHhccCcHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCC-CCCCCCCCCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHH
Q psy16064 270 CFFIVIPAAIIGVLAKFVDWSKIP-GYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFT 348 (515)
Q Consensus 270 ~~~~~~~~~~iG~~~~~~~~~~~~-g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~ 348 (515)
..++.+...++|+.++..+++... ...++....++|.++|.+.....|+++.|++.++++||.|||+||.+++.++.++
T Consensus 304 ~~~~~~~~~~~G~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~GlvaA~~~AA~mST~ss~lls~st~is 383 (549)
T PRK12488 304 IGYFYLLIIVVGFGAIVMVGTEPSYRDAGGKIIGGGNMVAVHLAQAVGGNLFLGFISAVAFATILAVVAGLALSGASAVS 383 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhcccccccCCCcchhHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667778899999887642110 0000001234678889999999999999999999999999999999999999999
Q ss_pred HHhhhhccCC-CCChHHHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCChHHHH
Q psy16064 349 RNIYHQSFRP-KASEYELMWVLRLSILAASVISCSIALSGA--SIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCL 425 (515)
Q Consensus 349 ~Di~~~~~~~-~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~--~i~~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga~ 425 (515)
||+|++++|| +.+|||+++++|+++++++++++.+++..+ ++..+....+++.+++++|++++++|||| .|++|++
T Consensus 384 ~Diy~~~~~~~~~s~~~~l~v~Ri~~vvvgv~a~~~a~~~~~~~i~~l~~~~~~~~a~~~~p~lllgl~wkr-~t~~ga~ 462 (549)
T PRK12488 384 HDLYACVIRKGQASEAQEMRVSKIATLGIGLLAVVLGLMFESQNIAFLSGLVLAIAASVNFPVLFLSMFWKG-LTTRGAV 462 (549)
T ss_pred HHHHHHhcCCCCCChHHhhHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 9999998865 789999999999999999999999998744 46666666677777889999999999999 9999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccCCCCccccccccchhhHHHHHHHHHHhhhhhccccccccc
Q psy16064 426 SSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEK 490 (515)
Q Consensus 426 ~s~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~~~~~ 490 (515)
+||++|+++.+..... ........+..+.. ...+.+...+++++|+++.+++|++||+++++
T Consensus 463 ag~i~G~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~v~~vvS~~t~~~~~~ 524 (549)
T PRK12488 463 AGSYAGLVSAVVLVVL--GPAVWVNVLHNATA-LFPYSNPALFSMSLAFLSAWVFSVTDRSERAV 524 (549)
T ss_pred HHHHHHHHHHHHHHHh--cchhhhhccccccc-cCCCcccHHHHHHHHHHHHheeeeCCCCCchh
Confidence 9999999988654210 00000000100000 01112346789999999999999999877544
No 5
>PRK10484 putative transporter; Provisional
Probab=100.00 E-value=8.2e-63 Score=538.04 Aligned_cols=416 Identities=20% Similarity=0.246 Sum_probs=346.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHH
Q psy16064 16 YGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYS 95 (515)
Q Consensus 16 ~~~i~i~~y~~~~l~ig~~~~r~~~~~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~ 95 (515)
.|++++++|.+.+.++|++.+||+|.+|.|||++|||++|+|+.++|+.||++|+.+|+|.||.+|++|+++.++.+++.
T Consensus 2 ~~i~~~~~~~~~~~~ig~~~~r~~~~~s~~dyflagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~ 81 (523)
T PRK10484 2 LTILSFLGFTLLVAVISWWKTRKTDTSSSDGYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAA 81 (523)
T ss_pred hhhHHHHHHHHHHHHHHHHHHccCCCCCchhheecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHH
Confidence 57889999999999999999888743489999999999999999999999999999999999999999998876666777
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHHHHHHHHH-HHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhh
Q psy16064 96 LTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGD-MLYLSSVLSSLGKQAKASLLFLPALLGDMLYLS 174 (515)
Q Consensus 96 ~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~-~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~ 174 (515)
++.++.+++++||+||.+..|+||++++|||++.|.+.+...++.. ..++..++.+.+.
T Consensus 82 ~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~-------------------- 141 (523)
T PRK10484 82 IALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGAL-------------------- 141 (523)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 7887888899999999999999999999999998776665544433 3355566555441
Q ss_pred hhhhhhhhhhhccccccccchhh--hHhhhCCchHHHHHHH----HHHHHHHhhccChhHHHHHHHHHHHHHHHHH----
Q psy16064 175 SVLSSLGKQAKASHYQVDLTGVS--LKVILGISDYLSVTIS----TMFAVAYTISGGLYSVSYTDVLQLIFIVFGL---- 244 (515)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~g~i--~~~~~gi~~~~~i~i~----~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~---- 244 (515)
+.| .+ .+..+|+|++.++++. ++++++||..||+|+|+|||++|+++|+++.
T Consensus 142 ------~l~------------~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ~vim~i~~iiv~ 203 (523)
T PRK10484 142 ------ALN------------SLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTINGIGLLIGGLLVP 203 (523)
T ss_pred ------HHH------------HHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 11 2346799988776553 5677999999999999999999999887653
Q ss_pred ----------------------------------------------------------HHHHHHhcCCChHHHHHHHHHH
Q psy16064 245 ----------------------------------------------------------SYFQRILSLKSSTDAVNVSLIS 266 (515)
Q Consensus 245 ----------------------------------------------------------~~~qr~~aak~~~~ar~~~~~~ 266 (515)
+++||++++||+|++||+..++
T Consensus 204 ~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qR~~aak~~k~a~~~~~~~ 283 (523)
T PRK10484 204 VFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQRALGAKNLAEGQKGALLA 283 (523)
T ss_pred HHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhh
Q psy16064 267 ATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSM 346 (515)
Q Consensus 267 ~~~~~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~ 346 (515)
+.+..+..+...++|+.++..+|+ +..++|+++|.++.+.+|+++.|+++++++||.|||+||.+|+.|+.
T Consensus 284 ~~~~~~~~~~~~~~G~~a~~~~p~---------~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l~s~st~ 354 (523)
T PRK10484 284 AFFKLLGPLILVLPGIIAFHLYGD---------GLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFLNSASTL 354 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---------ccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777778889999988653 13579999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCChH
Q psy16064 347 FTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALS----GASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSY 422 (515)
Q Consensus 347 ~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~----~~~i~~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ 422 (515)
++||+|++++|||++|||+++++|+++++++++++.++.. .+++.++.....+...++++|++++++|||| .|++
T Consensus 355 ~t~Diy~~~~~~~~s~~~~l~v~Ri~~vv~~ii~~~~a~~~~~~~~~i~~~~~~~~~~~~~pl~~~~llgl~wkr-~n~~ 433 (523)
T PRK10484 355 FSLDIYKPIINPNASEKQLVKVGKKFGFVLAIISMIVAPLIANAPQGLYSYLQQLNGIYNVPILAIIIVGFFTKR-VPAL 433 (523)
T ss_pred HHHHhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhHHHHHHHHHHHhCc-CChH
Confidence 9999999999999999999999999999999999999853 2456666655556666788899999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCccccCCCCccccccccchhhHHHHHHHHHHhhhhhcccccccccccc
Q psy16064 423 GCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLL 493 (515)
Q Consensus 423 ga~~s~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~~~~~~~~ 493 (515)
|+++|+++|.++...+.. .+..+ .+..+...+++.+|.++++++|+++|+++||++.
T Consensus 434 ga~~g~i~G~~~~~~~~~----------~~~~~----~~~~~~~~~~~~~~~~v~v~vsl~~~~~~~~~~~ 490 (523)
T PRK10484 434 AAKVALGFGIILYIIINF----------VLKFD----IHFLYVLAILFVINVVVMLIIGKIKPRETPFVLK 490 (523)
T ss_pred HHHHHHHHHHHHHHHHHH----------HhCCC----ccHHHHHHHHHHHHHHHHHHHhcccCCCCchhcc
Confidence 999999999999887642 01000 1122344678899999999999999988776544
No 6
>PRK09395 actP acetate permease; Provisional
Probab=100.00 E-value=9.3e-63 Score=540.39 Aligned_cols=447 Identities=15% Similarity=0.208 Sum_probs=371.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHH
Q psy16064 12 MIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAP 91 (515)
Q Consensus 12 ~~~~~~~i~i~~y~~~~l~ig~~~~r~~~~~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~ 91 (515)
.+|+.+++++++|++.++++|+|.+||+| |.|||++|||++|+|..++|+.||++|+.+|+|.||.+|++|+++.|+.
T Consensus 31 ~~~~~~~~i~~~y~~~~l~iG~~~~r~~~--s~~df~~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~ 108 (551)
T PRK09395 31 PTNWQAIIMFLIFVVFTLGITYWAAKRTR--SASDFYTAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYS 108 (551)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhcccC--CHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHH
Confidence 45788999999999999999999999877 7999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCcc-chhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhh
Q psy16064 92 VGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRR-IGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDM 170 (515)
Q Consensus 92 ~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~-~~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~ 170 (515)
+++.++.++..++++||+||.+..|+||++++|||++ .|.+.++..++..++|++.|+.+.|
T Consensus 109 ~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g----------------- 171 (551)
T PRK09395 109 IGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAG----------------- 171 (551)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 9999998888888999999999999999999999976 7889999999999999999999988
Q ss_pred hhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH------
Q psy16064 171 LYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL------ 244 (515)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~------ 244 (515)
.+++.++|+|++.++++.++++++||..||+|+++|||++|+++|+++.
T Consensus 172 -------------------------~il~~~~gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~iim~~g~ii~~~~ 226 (551)
T PRK09395 172 -------------------------KLIQLLFGLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAVLLLSGATFMAFM 226 (551)
T ss_pred -------------------------HHHHHHhCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888899999999999999999999999999999999999999988765
Q ss_pred ------------------------------------------------------HHHHHHhcCCChHHHHHHHHHHHHHH
Q psy16064 245 ------------------------------------------------------SYFQRILSLKSSTDAVNVSLISATAC 270 (515)
Q Consensus 245 ------------------------------------------------------~~~qr~~aak~~~~ar~~~~~~~~~~ 270 (515)
|++||++++||+|++||+..++..+.
T Consensus 227 ~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~k~ar~~~~~~~~~~ 306 (551)
T PRK09395 227 VMKHVGFSFENLFSEAVAVHPKGLAIMGPGGLVKDPISALSLGLALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFI 306 (551)
T ss_pred HHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhhcccHHHHhhhccCChHHHHHhHHHHHHHH
Confidence 78999999999999999999988776
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCC-C-CCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHH
Q psy16064 271 FFIVIPAAIIGVLAKFVDWSKIPGYDKPF-D-MTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFT 348 (515)
Q Consensus 271 ~~~~~~~~~iG~~~~~~~~~~~~g~p~~~-~-~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~ 348 (515)
.++.+...++|+.++...++. +..+++. + ..+++.+.+.+.....|+++.+++.++++||.|||.||.+++.+++++
T Consensus 307 ~~~~~~~~~iG~~a~~~~~~~-p~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~glv~A~~lAA~mST~ss~lla~st~~~ 385 (551)
T PRK09395 307 GYFYILTFIIGFGAIVLVGTN-PEFKDAAGALIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVS 385 (551)
T ss_pred HHHHHHHHHHHHHHHHHhccC-ccccccccccCCCcccHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677788899888775421 1010000 0 123566777777888899999999999999999999999999999999
Q ss_pred HHhhhhccCC-CCChHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCChHHHH
Q psy16064 349 RNIYHQSFRP-KASEYELMWVLRLSILAASVISCSIALSG--ASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCL 425 (515)
Q Consensus 349 ~Di~~~~~~~-~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~--~~i~~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga~ 425 (515)
||+|++++|| +.+|||+++++|+++++++++++.+++.. +++..+...++++.+++++|++++++|||| .|++|++
T Consensus 386 ~Diy~~~~~~~~~s~~~~l~v~Ri~~v~igi~a~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~lllglfwkr-~~~~gA~ 464 (551)
T PRK09395 386 HDLYANVIKKGKATERDELRVSKITTLVLGVVAIILGILFEKQNIAFMVGLAFAIAASANFPVLLLSMYWKG-LTTRGAV 464 (551)
T ss_pred HHHHHHhccCccccchhhhhHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhHH
Confidence 9999998876 68999999999999999999999999863 346777777777777889999999999999 9999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccCC-CCccccccccchhhHHHHHHHHHHhhhhhcccccccccccccccccc--eee
Q psy16064 426 SSVVIGILLRITGGEPNLGLPALIKYP-WYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLSTERWD--VLN 502 (515)
Q Consensus 426 ~s~i~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~~~~~~~~~~~~~~--~~~ 502 (515)
+|+++|+++.+.+... .+.....+ +.... ...+.+...+++++|+++.+++|++||++++|+.. |+++ ..+
T Consensus 465 ag~i~G~~~~l~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~vs~~v~~ivS~~t~~~~~~~~~--~~~~~~~~~ 538 (551)
T PRK09395 465 IGGWLGLISAVVLMIL---SPTVWVDILGHEKA-IFPYEYPALFSMPLAFVGIWFFSITDNSARAKRER--EAFRAQFVR 538 (551)
T ss_pred HHHHHHHHHHHHHHHH---cchhhhhccccccc-cCCccccHHHHHHHHHHHhheeeecCCCcchhhHH--HhHHHHHHH
Confidence 9999999988765310 00000000 00000 01112345689999999999999999887554443 3453 444
Q ss_pred cccCCccc
Q psy16064 503 AFPDVKTK 510 (515)
Q Consensus 503 ~~~~~~~~ 510 (515)
+..+.++|
T Consensus 539 ~~~~~~~~ 546 (551)
T PRK09395 539 SQTGIGAS 546 (551)
T ss_pred HhcCCCcc
Confidence 55555433
No 7
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=100.00 E-value=1.7e-61 Score=529.81 Aligned_cols=429 Identities=15% Similarity=0.221 Sum_probs=364.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHH
Q psy16064 10 SRMIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQ 89 (515)
Q Consensus 10 ~~~~~~~~~i~i~~y~~~~l~ig~~~~r~~~~~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~ 89 (515)
+.++|...++++++|+++++++|+|.+||+| +.|||++|||++|+|..++|+.+|++|+++|+|.+|.+|++|+++.|
T Consensus 27 ~~~~~~~~~~~~~~y~~~~l~ig~~~~r~~~--~~~dy~laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~ 104 (549)
T TIGR02711 27 RQPLNIQAIIMFLLFVGFTLYITYWASKKTR--SRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLI 104 (549)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhhcccC--CchhheeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 3445777888899999999999999999887 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCcc-chhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhh
Q psy16064 90 APVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRR-IGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLG 168 (515)
Q Consensus 90 ~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~-~~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~ 168 (515)
+.+++.++.++..++++||+||.+..|+||++++||++| .|.+.++..++..++|++.|+++.|
T Consensus 105 ~~~g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g--------------- 169 (549)
T TIGR02711 105 YSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAG--------------- 169 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 889999999888889999999999999999999999987 6888898889889999999999988
Q ss_pred hhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH----
Q psy16064 169 DMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL---- 244 (515)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~---- 244 (515)
.+++.++|+|++.++++.++++++||.+||||+++|||++|+++|+++.
T Consensus 170 ---------------------------~il~~~~gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~~g~i~~~ 222 (549)
T TIGR02711 170 ---------------------------KLIELLFGLNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKAVLLLFGATFMA 222 (549)
T ss_pred ---------------------------HHHHHHHCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888899999999999999999999999999999999999999987765
Q ss_pred --------------------------------------------------------HHHHHHhcCCChHHHHHHHHHHHH
Q psy16064 245 --------------------------------------------------------SYFQRILSLKSSTDAVNVSLISAT 268 (515)
Q Consensus 245 --------------------------------------------------------~~~qr~~aak~~~~ar~~~~~~~~ 268 (515)
|..||++++||+|++||+..++..
T Consensus 223 ~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~P~~~~R~~taks~k~ar~s~~~~~~ 302 (549)
T TIGR02711 223 FMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRFFTVSDAKEARKSVFYATG 302 (549)
T ss_pred HHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhcCCchhheeeeecCCHHHHHHHHHHHHH
Confidence 788999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCC-CCCCCCCCCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhH
Q psy16064 269 ACFFIVIPAAIIGVLAKFVDWSKIP-GYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMF 347 (515)
Q Consensus 269 ~~~~~~~~~~~iG~~~~~~~~~~~~-g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~ 347 (515)
+..++.+...++|+.++...++... ..+++....++|.+.+.+...+.|+++.+++.++++||.|||+||.+++.++.+
T Consensus 303 ~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~glv~A~~~AA~mST~~s~l~a~st~i 382 (549)
T TIGR02711 303 FMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAV 382 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777778889888876542110 000000013467889999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCC-CCChHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCChHHH
Q psy16064 348 TRNIYHQSFRP-KASEYELMWVLRLSILAASVISCSIALSG--ASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGC 424 (515)
Q Consensus 348 ~~Di~~~~~~~-~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~--~~i~~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga 424 (515)
+||+|++++|| +.+|||+++++|+++++++++++.+++.. .++..+...++++.+++++|++++++|||| .|++|+
T Consensus 383 ~~Diy~~~~~~~~~s~~~~~~v~Ri~~vv~g~ia~~~a~~~~~~~i~~l~~~~~~~~a~~~~p~lllgl~Wkr-~n~~GA 461 (549)
T TIGR02711 383 SHDLYANVIKKGKATERDELRVSKITVLILGVIAIGLGILFENQNIAFMVGLAFSIAASCNFPIILLSMYWSK-LTTRGA 461 (549)
T ss_pred HHHHHHHhcCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHH
Confidence 99999998865 77999999999999999999999999863 357777777777777789999999999999 999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccc-cCCCCccccccccchhhHHHHHHHHHHhhhhhcccccc
Q psy16064 425 LSSVVIGILLRITGGEPNLGLPALI-KYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIV 487 (515)
Q Consensus 425 ~~s~i~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~~ 487 (515)
++|+++|+++++.+... .|... ...+.+.. .....+...+++++++++.+++|+.+|++
T Consensus 462 ~ag~i~G~~~~~~~~~~---~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vs~~~~~~ 521 (549)
T TIGR02711 462 MIGGWLGLITAVVLMIL---GPTIWVQILGHEKP-IYPYEYPALFSMIVAFIGIWFFSITDNSE 521 (549)
T ss_pred HHHHHHHHHHHHHHHHc---CchhhhhhccCCcc-ccCCCCchhhhhHHHHHHHheeeecCCch
Confidence 99999999998876420 11000 00000000 01112346789999999999999988553
No 8
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=100.00 E-value=2.5e-59 Score=504.81 Aligned_cols=403 Identities=21% Similarity=0.248 Sum_probs=342.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCC--ChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHH-H
Q psy16064 16 YGIAGILTFYSIVLVVGIWAGTKQKNH--GEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAP-V 92 (515)
Q Consensus 16 ~~~i~i~~y~~~~l~ig~~~~r~~~~~--s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~-~ 92 (515)
.+++++++|+++++++|+|.+||+|++ +.|||++|||++|+|..++|+.||++|+++++|.+|.+|++|+++.+.. .
T Consensus 2 ~~~~~~~~y~~~~~~ig~~~~r~~~~~~~~~~dy~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~ 81 (471)
T TIGR02119 2 EVVIPLIIYLVTVFLIAIYASKRVQSTDSFLNEYFLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI 81 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHheeccCCCCCccceeEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH
Confidence 478899999999999999999988751 2469999999999999999999999999999999999999999865432 2
Q ss_pred HHHHHHHH---HHHHHHHHHHhcCCCCchHHHHHhhCccc-hhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhh
Q psy16064 93 GYSLTLVA---GALIFAKPMRDAGYITMLDPFQKTYGRRI-GGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLG 168 (515)
Q Consensus 93 g~~~~~~l---~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~-~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~ 168 (515)
+...+.+. .+..+.|..||.|..|++|++++|||++. |.+.++..++..+.|++.|+.+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g--------------- 146 (471)
T TIGR02119 82 QVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGA--------------- 146 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 22233322 23334445699999999999999999875 677788888888899999999887
Q ss_pred hhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH----
Q psy16064 169 DMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL---- 244 (515)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~---- 244 (515)
.+++.++|+|++.++++.++++++||.+||+|+++|||++|+++|+++.
T Consensus 147 ---------------------------~~l~~~~gi~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ~~v~~~~~~~~~ 199 (471)
T TIGR02119 147 ---------------------------RLIESLTGLSYLTALFIFSSSVLIYTTFGGFRAVALTDAIQGIVMFTGTTILL 199 (471)
T ss_pred ---------------------------HHHHHHHCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999999999999999988765
Q ss_pred ------------------------------------------------------HHHHHHhcCCChHHHHHHHHHHHHHH
Q psy16064 245 ------------------------------------------------------SYFQRILSLKSSTDAVNVSLISATAC 270 (515)
Q Consensus 245 ------------------------------------------------------~~~qr~~aak~~~~ar~~~~~~~~~~ 270 (515)
|.+||++++||+|++||+..++..+.
T Consensus 200 ~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~~~~a~~~~~~~~~~~ 279 (471)
T TIGR02119 200 IAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKDSKAMHRAMIIGTIVV 279 (471)
T ss_pred HHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCCHHHHhhhHhHHHHHH
Confidence 67899999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHH
Q psy16064 271 FFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRN 350 (515)
Q Consensus 271 ~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~D 350 (515)
.++.....++|+.++...|+ ..++|+++|.++.+.+|+++.++++++++||.|||+||.+++.++.++||
T Consensus 280 ~~~~~~~~~~G~~a~~~~p~----------~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l~~~ss~~~~D 349 (471)
T TIGR02119 280 GIIMLGMHLAGVLGRAVIPD----------LTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLLQSSSTIIKD 349 (471)
T ss_pred HHHHHHHHHHHHhhhhhccC----------CCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788889888876542 34689999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-HHHHHHHhhhhhhHHHHHHHhhcCCCCChHHHHHHHH
Q psy16064 351 IYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYY-LSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVV 429 (515)
Q Consensus 351 i~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~~i~~-l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga~~s~i 429 (515)
+|+++.||+.+|||+++++|+.++++++++..+++..+++.. +...+++...+.+++|+++++|||| .|++|+++|++
T Consensus 350 iy~~~~~~~~~~~~~~~~~r~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~plllgl~w~r-~t~~ga~~~~i 428 (471)
T TIGR02119 350 LYLNYIPKEAKESKIKKISMCITLIIGLLVIIAAIKPPDLIIWLNLFAFGGLEAAFIWPIVLGLYWKR-ANATGALASMI 428 (471)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CcHHHHHHHHH
Confidence 999999999999999999999999999999999988777543 3334455555677888999999999 99999999999
Q ss_pred HHHHHHHHhccCCCCCCccccCCCCccccccccchhhHHHHHHHHHHhhhhhccccc
Q psy16064 430 IGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAI 486 (515)
Q Consensus 430 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~ 486 (515)
+|+++.+.+.. + .+.. .. .+...+++++|+++++++|+++|+
T Consensus 429 ~G~~~~~~~~~----~-----~~~~-----~~-~~~~~~g~~~~~~~~~~~s~~~~~ 470 (471)
T TIGR02119 429 VGVGSYITLES----F-----KPKI-----FG-LHNIVPSLVFALIAFIIGSLFGKK 470 (471)
T ss_pred HHHHHHHHHHH----H-----cccc-----cc-cchHHHHHHHHHHHHHHhhccCCC
Confidence 99998887642 0 1110 01 122356899999999999999654
No 9
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=100.00 E-value=5.1e-60 Score=519.01 Aligned_cols=426 Identities=18% Similarity=0.208 Sum_probs=343.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHH
Q psy16064 18 IAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLT 97 (515)
Q Consensus 18 ~i~i~~y~~~~l~ig~~~~r~~~~~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~ 97 (515)
|+++++|+++++++|+|. |+| |.|||++|||++|+|..++|+.||++|+.+|+|.||.+|++|+++.|+.+++.++
T Consensus 2 ~~i~~~y~~~~l~iG~~~--~~~--s~~dy~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~ 77 (552)
T TIGR03648 2 YLFVGATFALYIGIGIWS--RAG--STSEFYVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGG 77 (552)
T ss_pred eEEehHHHHHHHHHHHhe--ecC--chHHHeeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 567899999999999997 344 6999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHhhCcc-chhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhh
Q psy16064 98 LVAGALIFAKPMRDAGYITMLDPFQKTYGRR-IGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSV 176 (515)
Q Consensus 98 ~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~-~~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~ 176 (515)
.++.+++++|++||.+..|++||+++|||++ .|.+.++..++..++|++.|+.+.+
T Consensus 78 ~~~~~~~~~p~~rr~~~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~----------------------- 134 (552)
T TIGR03648 78 YVLLALLLAPYLRKFGKYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVG----------------------- 134 (552)
T ss_pred HHHHHHHHHHHHHHCCCccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 8888999999999999999999999999987 5888888888889999999999887
Q ss_pred hhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH------------
Q psy16064 177 LSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL------------ 244 (515)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~------------ 244 (515)
.+++.++|+|++.++++.++++++||..||+|+|+|||++|+++|+++.
T Consensus 135 -------------------~~l~~~~gi~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~iim~ig~i~~~~~~~~~~~ 195 (552)
T TIGR03648 135 -------------------VVFSRFLEVDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYIVLIVAYLVPAIFISLKLT 195 (552)
T ss_pred -------------------HHHHHHHCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6888999999999999999999999999999999999999998865321
Q ss_pred -------------------------------------------------------------HHHHHHhcCCChHHHHHHH
Q psy16064 245 -------------------------------------------------------------SYFQRILSLKSSTDAVNVS 263 (515)
Q Consensus 245 -------------------------------------------------------------~~~qr~~aak~~~~ar~~~ 263 (515)
|.+||++++||+|++||+.
T Consensus 196 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~p~~~qR~~aaks~~~a~~~~ 275 (552)
T TIGR03648 196 GNPVPQLGYGSALSGVYLLDKLDELEVDLGFAEYTEPFGSKSRINVFALTLALMVGTAGLPHVIVRFYTVPKVRDARWSA 275 (552)
T ss_pred CCCchhhhhHHHHhhhhhhhhhhhcccccchhhhccccccCChHHHHHHHHHHHHhcccchHHHHHHhcCCCHHHHHHHH
Confidence 5679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCC-----CCCC-----------CCCCCCccchHH------------------
Q psy16064 264 LISATACFFIVIPAAIIGVLAKFVDWSKIP-----GYDK-----------PFDMTESNSVLP------------------ 309 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~-----g~p~-----------~~~~~~~d~~~p------------------ 309 (515)
.++..+..+.......+|..++....+... ..|+ .....|+|+++|
T Consensus 276 ~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 355 (552)
T TIGR03648 276 GWALFFIALLYTTAPAVAAFARYNLITTVNGTPYAELPGWVANWEKTGLLKFEDKNGDGILQYSGDAGNELTIDRDIIVL 355 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhhhhhhhccccccccccCCCCcccccccccccccccccHHHh
Confidence 888765555555555666665544311100 0010 000112333332
Q ss_pred -HHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcch
Q psy16064 310 -LVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGA 388 (515)
Q Consensus 310 -~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~ 388 (515)
....+.+|+++.|+++++++||.|||+||.+++.|++++||+|++++||+.+|||+++++|++++++++++..+++..+
T Consensus 356 ~~~~~~~lp~~l~gl~~ag~~aA~mSt~~s~l~a~st~~~~Di~~~~~~~~~s~~~~l~~~R~~~v~~~~~~~~~a~~~~ 435 (552)
T TIGR03648 356 ATPEIAGLPYWVIGLVAAGGLAAALSTAAGLLLVISSAISHDLYYRIINPNASEKQRLLVARIALVVAAVIAGYFGLNPP 435 (552)
T ss_pred hHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHHHccc
Confidence 2234579999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred -hHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhccCCCCCCc-ccc-CCCCccccc--cccc
Q psy16064 389 -SIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPA-LIK-YPWYDYQLQ--QQLF 463 (515)
Q Consensus 389 -~i~~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga~~s~i~G~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~--~~~~ 463 (515)
++.++...++++.+++++|++++++|||| .|++|+++|+++|+.+.+.+.......+. ..+ .+..+.... .+..
T Consensus 436 ~~i~~l~~~~~~~~~~~~~~~~llgl~w~r-~~~~ga~~g~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (552)
T TIGR03648 436 GFIAQVVAFAFGLAAASFFPALVLGIFWKR-MNREGAIAGMLTGLGFTFSYIVYFKPWGFIGTNPGANVPENWWFGISPE 514 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCccccccCCcc
Confidence 47777777777777889999999999999 99999999999999998754210000000 000 000000000 1112
Q ss_pred hhhHHHHHHHHHHhhhhhccccccccc
Q psy16064 464 PFKTMAMLLSAASHLLISKLAAIVFEK 490 (515)
Q Consensus 464 p~~~~~~~~s~i~~vvvSl~t~~~~~~ 490 (515)
.+..+++++|+++++++|+++|++++|
T Consensus 515 ~~~~i~~~v~~~v~~~vS~~t~~~~~~ 541 (552)
T TIGR03648 515 GIGLIGMPVNFAVAIVVSLVTPPPPQE 541 (552)
T ss_pred cchHHHHHHHHHHheeeecCCCCCcHH
Confidence 235789999999999999999876543
No 10
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=100.00 E-value=9.5e-60 Score=484.37 Aligned_cols=443 Identities=16% Similarity=0.237 Sum_probs=381.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHH
Q psy16064 13 IDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPV 92 (515)
Q Consensus 13 ~~~~~~i~i~~y~~~~l~ig~~~~r~~~~~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~ 92 (515)
.|...+.++++|....+.+++|+++|.| |..|||+|||+++.+..++.+.++++|+.+|+|.+|..+..|++++++..
T Consensus 4 ~~~~~i~i~~l~v~~~l~i~~~~~~R~~--s~tdyYvAG~~i~~fqNGlAiagdyMSaASflGiag~I~~~GYdG~~Y~i 81 (529)
T COG4147 4 VNWQVIGIFVLFVLITLYITYWASKRTR--SATDYYVAGGRITGFQNGLAIAGDYMSAASFLGIAGLIFISGYDGLIYSI 81 (529)
T ss_pred CcceeEehhHHHHHHHHhheeeeecccc--cccceeecCCcccccccceehhccccchHhhhchhHhhhhcccchHHHHH
Confidence 4455667788888899999999999998 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCcc-chhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhh
Q psy16064 93 GYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRR-IGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDML 171 (515)
Q Consensus 93 g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~-~~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~ 171 (515)
|+..|++++.++++|++||.+.+|.||++++||+++ .|.++++.+++....|+..|+.+.|
T Consensus 82 G~~~Gy~i~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG------------------ 143 (529)
T COG4147 82 GWTGGYPILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAG------------------ 143 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhH------------------
Confidence 999999999999999999999999999999999986 6999999999999999999999988
Q ss_pred hhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH-------
Q psy16064 172 YLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL------- 244 (515)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~------- 244 (515)
.+++.++|+|+++++++..+++.+|+.+||||++.||+++|.++++.+.
T Consensus 144 ------------------------~li~~l~gv~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i 199 (529)
T COG4147 144 ------------------------LLISLLLGVPYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMI 199 (529)
T ss_pred ------------------------HHHHHHhCCCceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999999999999999999998766
Q ss_pred -------------------------------------------------------HHHHHHhcCCChHHHHHHHHHHHHH
Q psy16064 245 -------------------------------------------------------SYFQRILSLKSSTDAVNVSLISATA 269 (515)
Q Consensus 245 -------------------------------------------------------~~~qr~~aak~~~~ar~~~~~~~~~ 269 (515)
|...|+++.+|.|||||+..|+..+
T Consensus 200 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~f 279 (529)
T COG4147 200 MWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGF 279 (529)
T ss_pred HHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHH
Confidence 6788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCC------------CCCCC-CCCCccchHHHHHHHhC-chhHHHHHHHHHHHHHHHh
Q psy16064 270 CFFIVIPAAIIGVLAKFVDWSKIPG------------YDKPF-DMTESNSVLPLVLRYLT-PGWVTFFGLGAVSASVMSS 335 (515)
Q Consensus 270 ~~~~~~~~~~iG~~~~~~~~~~~~g------------~p~~~-~~~~~d~~~p~~~~~~l-p~~l~gl~l~~llAA~mST 335 (515)
...+++...++|..++...-.+..+ +.++. .....|++.+....+.- |+++.+++.++-+|++|||
T Consensus 280 Ig~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLst 359 (529)
T COG4147 280 IGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALST 359 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHH
Confidence 9999999999999998775311111 11111 12233788888888888 8999999999999999999
Q ss_pred HhHHHHhhhhhHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHhhhhhhHHHHHHHhh
Q psy16064 336 ADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGAS-IYYLSVVCSDVVYVTLFPQLVLVVH 414 (515)
Q Consensus 336 ~~s~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~~-i~~l~~~~~~~~~~~l~~~ll~gl~ 414 (515)
+++.+++.++.++||+|.+.+||+++|||+++++|+.++++++++..++.++++ +..+..+++++-+++.+|.+++++|
T Consensus 360 aaGL~l~iasavsHDiY~~vik~~ase~~~v~vaRi~~v~~~vva~~lgi~~~gnVaflVa~AF~lAaSa~fPvivlglf 439 (529)
T COG4147 360 AAGLLLVIASAVSHDLYAMVIKKGATEKKEVRVARIAVVILGVVAILLGILPPGNVAFLVALAFALAASANFPVIVLGLF 439 (529)
T ss_pred HhhHHHHHHHHHHhHHHHHHhCCCCCccceehhHHHHHHHHHHHHHHheecCCccHHHHHHHHHHHHHHcccchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999764 7788889999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhccCC-CCCCccccCCCCccccccccchhhHHHHHHHHHHhhhhhcccccccccccc
Q psy16064 415 GANHVNSYGCLSSVVIGILLRITGGEPN-LGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLL 493 (515)
Q Consensus 415 wkr~~t~~ga~~s~i~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~~~~~~~~ 493 (515)
||| .|++|+++||+.|+.++++..... .........|..+.. ....-+++.+++++++++.+++|++||+++|||..
T Consensus 440 WKr-~n~~GAi~G~~~GL~~tlv~i~l~~~i~~~~~~~~~~~~~-~~~~~~~g~~sipv~F~~~~ivSllt~~~~~~~vq 517 (529)
T COG4147 440 WKR-LNTAGAIAGMLLGLIVTLVLIILSPTIWVVILGHPGFGWA-GFPYEGPGLFSIPVGFLGAWIVSLLTKPPEEDEVQ 517 (529)
T ss_pred Hhh-ccHHhHHHHHHHHHHHHHHHHHhCccccccccCccccccc-cCCCCCcchhhhhHHHHHhHheeccCCCCchHHHH
Confidence 999 999999999999999998864310 000000001111100 11223467899999999999999999999877633
Q ss_pred cccccceeec
Q psy16064 494 STERWDVLNA 503 (515)
Q Consensus 494 ~~~~~~~~~~ 503 (515)
.+.+++|.
T Consensus 518 --~~~~~lR~ 525 (529)
T COG4147 518 --FLVQDLRS 525 (529)
T ss_pred --HHHHHHhc
Confidence 33344443
No 11
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=2.8e-57 Score=490.09 Aligned_cols=418 Identities=23% Similarity=0.309 Sum_probs=353.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHH
Q psy16064 14 DVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVG 93 (515)
Q Consensus 14 ~~~~~i~i~~y~~~~l~ig~~~~r~~~~~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g 93 (515)
+..+++++.+|++.++.+|++++||+| |.|||++|||++|+++.++|..++++|+++|+|.||.+|.+|+.+.|...+
T Consensus 2 ~~~~~ii~~iyli~~~~ig~~a~~~~~--~~~dy~~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~ 79 (493)
T COG0591 2 MLILLIIFLIYLILMLLIGLYAYRKTK--SLEDYFLGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIG 79 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcccC--chHHHhccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHH
Confidence 456889999999999999999999998 899999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhc----CCCCchHHHHHhhCcc-chhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhh
Q psy16064 94 YSLTLVAGALIFAKPMRDA----GYITMLDPFQKTYGRR-IGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLG 168 (515)
Q Consensus 94 ~~~~~~l~~~~~a~~~rr~----~~~T~~e~~~~Rfg~~-~~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~ 168 (515)
..++..+.+.+++||+||. |..|+|||+++||||+ .|.+.+++.++..++|++.|+++.+
T Consensus 80 ~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~--------------- 144 (493)
T COG0591 80 LLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGG--------------- 144 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 8788888999999999885 5999999999999965 6899999999999999999999998
Q ss_pred hhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH----
Q psy16064 169 DMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL---- 244 (515)
Q Consensus 169 ~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~---- 244 (515)
.+++..+|+|+..++++.+.+++.||.+||+|++.|||.+|+++|.+++
T Consensus 145 ---------------------------~~~~~~~gi~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg~im~i~~~~~~ 197 (493)
T COG0591 145 ---------------------------LLLSLLFGISYVTGILIGALIVALYTFLGGLRAVVWTDFIQGLIMLIALIVIP 197 (493)
T ss_pred ---------------------------HHhhhhcCCCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999999999999877
Q ss_pred -------------------------------------------------------HHHHHHhcCCChHHHHHHHHHHHHH
Q psy16064 245 -------------------------------------------------------SYFQRILSLKSSTDAVNVSLISATA 269 (515)
Q Consensus 245 -------------------------------------------------------~~~qr~~aak~~~~ar~~~~~~~~~ 269 (515)
|..||+++.|++|+.+|........
T Consensus 198 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~ 277 (493)
T COG0591 198 ILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHILPRFMAAKSIKSLPKSARLAGIL 277 (493)
T ss_pred HHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhhhhhhhhccHhhhHHHHHHHHHH
Confidence 7889999988877766554444443
Q ss_pred HHHHHHH-HHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHH
Q psy16064 270 CFFIVIP-AAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFT 348 (515)
Q Consensus 270 ~~~~~~~-~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~ 348 (515)
..+.++. ...+|.......++... ......|+|+++|.++++.+|||+.|+++++++||.|||+|+++++.+++++
T Consensus 278 ~~~~~~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~ailaAvmSt~ss~ll~~ss~~t 354 (493)
T COG0591 278 WPLYCLLGAFLLGLLGIAYFPLLPD---LSVPLLNPELVFPYLILALFPPWIAGLLLAAILAAVMSTASSQLLVASSAIT 354 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc---ccccCCCHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3332222 35556666555432100 0012468999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHhhhhhhHHHHHHHhhcCCCCChHHHHHH
Q psy16064 349 RNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGAS-IYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSS 427 (515)
Q Consensus 349 ~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~~-i~~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga~~s 427 (515)
||+||++.|||++||++++++|+.++++++++..++...++ +..+....+..++++++|++++++|||| .|++|+.+|
T Consensus 355 ~Diyk~~~~~~a~~k~l~~i~r~~v~vi~~~a~~~a~~~~~~i~~l~~~~~~g~~a~~~p~~~~~L~wkr-~t~~ga~ag 433 (493)
T COG0591 355 RDIYKRFLRKNASEKELVRIGRVVVLVIALLALLLALLPPSSILGLVSLALAGFGAQFLPALLLGLFWKR-ATKRGAIAG 433 (493)
T ss_pred HHHHHHHhCCCCChhHhhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHhheeeecc-chHhHHHHH
Confidence 99999999999999999999999999999999999998876 5557777777777799999999999999 999999999
Q ss_pred HHHHHHHHHH-hccCCCCCCccccCCCCccccccccchhhHHHHHHHHHHhhhhhcccccc
Q psy16064 428 VVIGILLRIT-GGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIV 487 (515)
Q Consensus 428 ~i~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~~ 487 (515)
|++|.++.+. |... .+ ..+..... ....+....++.++.++.+++|++++++
T Consensus 434 mi~G~i~~~~~~~~~---~~---~~~~~~~~--~~~~~~~v~~fiv~~~~~~~~sl~~~~~ 486 (493)
T COG0591 434 MIAGLIVVLLTWLLF---LK---SFPYGAFA--LGGLYEVVPGFIVNLLVTVVVSLLTKAE 486 (493)
T ss_pred HHHHHHHHHHHHHhh---cC---ccccchhc--chhHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 9999999998 4311 00 00100000 0112233468899999999999998874
No 12
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=100.00 E-value=2.1e-55 Score=438.58 Aligned_cols=404 Identities=22% Similarity=0.248 Sum_probs=346.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC-CChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHH--
Q psy16064 18 IAGILTFYSIVLVVGIWAGTKQKN-HGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGY-- 94 (515)
Q Consensus 18 ~i~i~~y~~~~l~ig~~~~r~~~~-~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~-- 94 (515)
.+.++.|+..++++++|..+|.+| +-.+|||+||||+|.++.+++..||++|+++|+|-||.+|.+|++|.....--
T Consensus 4 ~~pli~YL~~v~~i~iy~~~k~~k~~fLneYylgnRsmgg~VlAmt~~aTYisaSSFigGpgaayk~GlgwvlLa~iqvp 83 (473)
T COG4145 4 ILPLIGYLVVVFGIAIYAYRKRSKGSFLNEYYLGNRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGWVLLAMIQVP 83 (473)
T ss_pred ehhHHHHHHHHHHHHHHHHhhhccccchHHHHhccCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHHHHHHHHHHH
Confidence 456789999999999999665443 46899999999999999999999999999999999999999999986432211
Q ss_pred --HHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccc-hhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhh
Q psy16064 95 --SLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRI-GGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDML 171 (515)
Q Consensus 95 --~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~-~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~ 171 (515)
.+....++..+++.-||+|..|++|++++||.++. .+++++.-+++...++..|+++.+
T Consensus 84 ~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGga------------------ 145 (473)
T COG4145 84 TVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGA------------------ 145 (473)
T ss_pred HHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHH------------------
Confidence 12333344455555688999999999999999985 667777777888889999999988
Q ss_pred hhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH-------
Q psy16064 172 YLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL------- 244 (515)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~------- 244 (515)
++++..+|+|+.++.++.+..+.+||.+||.|||+.||.+|+++|++|.
T Consensus 146 ------------------------rLlE~~~gidY~tgL~ifa~~V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~ 201 (473)
T COG4145 146 ------------------------RLLETALGIDYTTGLLIFAVSVAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGV 201 (473)
T ss_pred ------------------------HHHHHHHCCCchhhHHHHHHHHHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999887
Q ss_pred ---------------------------------------------------HHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q psy16064 245 ---------------------------------------------------SYFQRILSLKSSTDAVNVSLISATACFFI 273 (515)
Q Consensus 245 ---------------------------------------------------~~~qr~~aak~~~~ar~~~~~~~~~~~~~ 273 (515)
|...|+.+.||.|...++..+++....+.
T Consensus 202 i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kDskaih~gmiigt~vi~il 281 (473)
T COG4145 202 IYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKDSKAIHRGMIIGTIVIAIL 281 (473)
T ss_pred HHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccchhHHhcCcchHHHHHHHH
Confidence 67889999999999999999999988888
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHHhhh
Q psy16064 274 VIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYH 353 (515)
Q Consensus 274 ~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~Di~~ 353 (515)
.+....+|..++...|+ ..++|++.|.+..+.+||...++++++.+||+|||.||+++-.++.+.+|+|.
T Consensus 282 ~~gmhl~G~~graViPd----------lt~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~~sstliKdLy~ 351 (473)
T COG4145 282 MLGMHLAGALGRAVIPD----------LTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSSSTLIKDLYL 351 (473)
T ss_pred HHHHHHhhhhhhhhcCC----------CCccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999998864 46799999999999999999999999999999999999999999999999998
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-HHHHHHHhhhhhhHHHHHHHhhcCCCCChHHHHHHHHHHH
Q psy16064 354 QSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYY-LSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGI 432 (515)
Q Consensus 354 ~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~~i~~-l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga~~s~i~G~ 432 (515)
....++.+|++..+.+|+++++.+.+-++.++++++... +-.++++..-+.+++|+++|+||+| .|+.|+.+||++|.
T Consensus 352 ~~~~~~~~E~ki~~is~~~t~i~~~l~~i~al~Pp~~iiwlnlfAfggle~~Fl~plvlgLYw~k-aNa~ga~aSMi~g~ 430 (473)
T COG4145 352 NVRDKLKNERKIKRISMIATLIFGALLLIAALNPPEMIIWLNLFAFGGLEAVFLWPLVLGLYWEK-ANAAGALASMIVGL 430 (473)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhCCcceeeeeehhhhcchhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 854456789999999999999999999999999998543 3345666677888999999999999 99999999999999
Q ss_pred HHHHHhccCCCCCCccccCCCCccccccccchhhHHHHHHHHHHhhhhhcccccccc
Q psy16064 433 LLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFE 489 (515)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~~~~ 489 (515)
+....+... +. +.-+. -...| ++.+|++++.++++..|+.+|
T Consensus 431 ~~y~~l~~~--~~----ki~~f-----hpivP----~l~vsi~~Flv~n~fg~~~~~ 472 (473)
T COG4145 431 VLYVLLAFL--GI----KILGF-----HPIVP----SLLVSIIAFLVGNLFGKSKSE 472 (473)
T ss_pred HHHHHHHHH--hh----Hhhee-----ccccH----HHHHHHHHHHHHHHhcccccC
Confidence 999887531 11 00011 11234 899999999999999865543
No 13
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=100.00 E-value=4.6e-56 Score=470.53 Aligned_cols=337 Identities=27% Similarity=0.416 Sum_probs=276.5
Q ss_pred HHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhC
Q psy16064 47 VMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYG 126 (515)
Q Consensus 47 y~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg 126 (515)
|++||||+|+|+.++|++||++|+++++|.+|.+|++|+++.|+.+++.++.++.+++++||+||.|..|++|++++|||
T Consensus 1 f~~agr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 1 FFVAGRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYG 80 (406)
T ss_dssp -----S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-
T ss_pred CeeCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcC
Confidence 78999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred ccc--hhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhhCC
Q psy16064 127 RRI--GGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGI 204 (515)
Q Consensus 127 ~~~--~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi 204 (515)
++. |.+.++..++..++|++.|+++.+ .+++.++|+
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~------------------------------------------~~~~~~~gi 118 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGG------------------------------------------ALLSVLFGI 118 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHH------------------------------------------HHHHHHTT-
T ss_pred Cchhhhhhcccccchhhhhhhhccccccc------------------------------------------cchhhccch
Confidence 987 777778788888899999999988 688889999
Q ss_pred chHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH----------------------------------------
Q psy16064 205 SDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL---------------------------------------- 244 (515)
Q Consensus 205 ~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~---------------------------------------- 244 (515)
|++.++++..+++++||..||+|+++|||++|+++|+++.
T Consensus 119 ~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (406)
T PF00474_consen 119 PYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMF 198 (406)
T ss_dssp -HHHHHHHHHHHHHHTTCTT------SHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS----
T ss_pred hhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccc
Confidence 9999999999999999999999999999999999998776
Q ss_pred ---------------------HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCCCCCCC
Q psy16064 245 ---------------------SYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVD---WSKIPGYDKPFD 300 (515)
Q Consensus 245 ---------------------~~~qr~~aak~~~~ar~~~~~~~~~~~~~~~~~~~iG~~~~~~~---~~~~~g~p~~~~ 300 (515)
+.+||++++||+|++||+...+.....++......+|+.+.... |+.. ..+
T Consensus 199 ~~~~~~~~~~~~~~~g~~~~p~~~qR~~aak~~~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~-----~~~ 273 (406)
T PF00474_consen 199 SSPLFFLSFWIALMLGTFGAPHFWQRFLAAKSPKTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAA-----GPS 273 (406)
T ss_dssp -SSGGGGS-TTHHHHSTHHH-HHHHHHHSSSHHHHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT-------S-
T ss_pred cchhhhHHHHHHHHhhhccchHHHHHHHhcCCHHHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccc-----ccc
Confidence 78999999999999999999887766555555556676654432 2111 113
Q ss_pred CCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHHhhhhccCCC-CChHHHHHHHHHHHHHHHHH
Q psy16064 301 MTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPK-ASEYELMWVLRLSILAASVI 379 (515)
Q Consensus 301 ~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~Di~~~~~~~~-~s~k~~~~~~Ri~~~~v~~~ 379 (515)
..++|+++|.++++++|+++.++++++++||.|||+||.+++.+++++||+|+++.||+ .+|||+++++|+.+++++++
T Consensus 274 ~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ST~~s~l~a~ss~~~~Di~~~~~~~~~~s~~~~~~~~ri~~~v~~~i 353 (406)
T PF00474_consen 274 LGDPDLAFPYLAAQYLPPGLAGLFLAGILAAIMSTADSLLLAISSIFSRDIYKPFIKPNSASEKQLLRVSRIAIVVIGII 353 (406)
T ss_dssp SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-SS-S-SSHHHHHHHHHHHHHHHH
T ss_pred ccCCcccchhhhhhhccchhHHHHHHHHHHhhhHHHHHHHhhhhhhhhHHhhhccccccccchhhhhhccceeEEeeHHh
Confidence 46899999999999999999999999999999999999999999999999999988887 89999999999999999999
Q ss_pred HHHHHhcchh--HHHHHHHHHHhhhhhhHHHHHHHhhcCCCCChHHHHHHHHHH
Q psy16064 380 SCSIALSGAS--IYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIG 431 (515)
Q Consensus 380 ~~~~a~~~~~--i~~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga~~s~i~G 431 (515)
+.++++..++ +.++....++...++++||+++++|||| .|++|+++|+++|
T Consensus 354 ~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~gl~wkr-~t~~ga~~~~i~G 406 (406)
T PF00474_consen 354 AILLALFFPDSGIIDLILFAFGILAAPFFPPLLLGLYWKR-ATKRGAIAGMIVG 406 (406)
T ss_dssp HHHHGGGGGGSSHHHHHHHHHTTTHHHHHHHHHHHHH-TT---HHHHHHHHH--
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCHHHHhhheeeC
Confidence 9999998765 6888888888888889999999999999 9999999999987
No 14
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=100.00 E-value=8.6e-54 Score=453.65 Aligned_cols=338 Identities=27% Similarity=0.386 Sum_probs=306.3
Q ss_pred hCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCcc-
Q psy16064 50 AGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRR- 128 (515)
Q Consensus 50 aGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~- 128 (515)
|||++|+|+.++|+.||++|+++++|.+|.+|++|+++.|+.+++.++.++.++++.|+.||.+..|++|++++|||++
T Consensus 1 agr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 1 AGRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhCchH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHH
Q psy16064 129 IGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYL 208 (515)
Q Consensus 129 ~~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~ 208 (515)
.|.+.++..++..++|++.|+++.+ .+++.++|+|++.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~------------------------------------------~il~~~~gi~~~~ 118 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGA------------------------------------------LLIELITGLDLYL 118 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHHHHhCchHHH
Confidence 6788888888899999999999988 6888899999999
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH--------------------------------------------
Q psy16064 209 SVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL-------------------------------------------- 244 (515)
Q Consensus 209 ~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~-------------------------------------------- 244 (515)
++++.++++++||.+||+|+++|||++|+++|+++.
T Consensus 119 ~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 198 (407)
T TIGR00813 119 SLLLLGAITILYTVFGGLKAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTS 198 (407)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCccc
Confidence 999999999999999999999999999999988754
Q ss_pred ------------HH----------HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Q psy16064 245 ------------SY----------FQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMT 302 (515)
Q Consensus 245 ------------~~----------~qr~~aak~~~~ar~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~ 302 (515)
+. +||++++||+|++||+.+++..+..++.+...++|+.++..+++..+..+ +....
T Consensus 199 ~~~~~~~~~~~p~~~~~~~~~~~~~qR~~a~ks~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~-~~~~~ 277 (407)
T TIGR00813 199 DLPWGAGVFGLPHVALWYWTNQVIVQRCLAAKSAKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALA-GAVNQ 277 (407)
T ss_pred CCChHHHHhChHHHHHHHhcCHHHhhHHHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhh-cccCC
Confidence 23 99999999999999999999988888888889999999987653111000 00024
Q ss_pred CccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHHhhhhccCCCCC-hHHHHHHHHHHHHHHHHHHH
Q psy16064 303 ESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKAS-EYELMWVLRLSILAASVISC 381 (515)
Q Consensus 303 ~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~Di~~~~~~~~~s-~k~~~~~~Ri~~~~v~~~~~ 381 (515)
|+|+++|.++++.+|+++.|+++++++||.|||+||.+++.++.++||+|+++.|||.+ ||++++.+|++++++++++.
T Consensus 278 ~~~~~~p~~~~~~lp~~l~gl~~agilaA~mST~~s~l~a~ss~~~~Di~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~ 357 (407)
T TIGR00813 278 NSDQAYPLLVQELMPPGLAGLFLAAILAAVMSTLSSQLNSASTVFTMDLYKKIIRPNASGEKKIVMRGRIAVLVAAVIAG 357 (407)
T ss_pred ChhhHHHHHHHHHcCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999998887 88899999999999999999
Q ss_pred HHHhcc-hhHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCChHHHHHHHHHH
Q psy16064 382 SIALSG-ASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIG 431 (515)
Q Consensus 382 ~~a~~~-~~i~~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga~~s~i~G 431 (515)
+++... +++.++...+++...++++||+++++|||| .|++|+++||++|
T Consensus 358 ~~~~~~~~~i~~~~~~~~~~~~~~~~~pl~lgl~w~r-~~~~ga~~~~i~G 407 (407)
T TIGR00813 358 FVAAAQGGQVLQYVQEAFGGLGAPFLPVFLLGIFWKR-MNAKGALAGMIAG 407 (407)
T ss_pred HHHHcCCchHHHHHHHHHHHhcchHHHHHHHHHhcCc-CChHhHHHHhhcC
Confidence 987754 568888888888888899999999999999 9999999999876
No 15
>KOG3761|consensus
Probab=100.00 E-value=1.4e-50 Score=397.90 Aligned_cols=450 Identities=49% Similarity=0.843 Sum_probs=404.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccCC---------CChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhh-
Q psy16064 14 DVYGIAGILTFYSIVLVVGIWAGTKQKN---------HGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFST- 83 (515)
Q Consensus 14 ~~~~~i~i~~y~~~~l~ig~~~~r~~~~---------~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~- 83 (515)
+...++.++.|+++++.+|+|+.||.|+ ...|+-.++||++|..+.++++.|||.++..+-|+++..|..
T Consensus 3 ~l~giiaii~fyllillvgiwa~~kskns~~~e~~agaate~iil~grdig~lvg~ftmtatwvgg~yingtaealy~~g 82 (591)
T KOG3761|consen 3 DLEGIIAIIFFYLLILLVGIWAARKSKNSGEAEEEAGAATEAIILAGRDIGLLVGGFTMTATWVGGAYINGTAEALYNGG 82 (591)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcccCccchhhhccccchhheeccccceeeeeeEEEEEEEecceeeccchhhhccCC
Confidence 4556788999999999999999999885 112778999999999999999999999999999999999998
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhh
Q psy16064 84 -GLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLF 162 (515)
Q Consensus 84 -G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~ 162 (515)
|+.|.+.++||.+..++.+++|++++|+.++.|+-|-|++.||.|...+..+.+++.-++|.+..+.++|
T Consensus 83 ygl~~~qapigyaislilggl~fak~mr~egyitmldpfq~~ygkriggll~ipallge~fwaaai~salg--------- 153 (591)
T KOG3761|consen 83 YGLAGAQAPIGYAISLILGGLFFAKKMREEGYITMLDPFQHIYGKRIGGLLFIPALLGEMFWAAAIFSALG--------- 153 (591)
T ss_pred cccccccCcchhhHHHHhhhhhhcchhhhcCcEEeechHHHHhhhhccceEeeHHHHhHHHHHHHHHHHhc---------
Confidence 5567778999999999999999999999999999999999999998888778888888888888777776
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH
Q psy16064 163 LPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVF 242 (515)
Q Consensus 163 lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~i 242 (515)
..++.+.+++....+++.+.+..+||..||+.+|++||++|..++.+
T Consensus 154 ---------------------------------atisvii~idm~~sv~isa~ia~~yt~~gg~yavaytdvvqlfcifv 200 (591)
T KOG3761|consen 154 ---------------------------------ATISVIIDIDMHASVIISACIATFYTFTGGLYAVAYTDVVQLFCIFV 200 (591)
T ss_pred ---------------------------------CeEEEEEeccccHhHHHHHHHHHHHhhccceEEEeehhHHHHHHHHh
Confidence 56778899999999999999999999999999999999999999999
Q ss_pred HH---------------------------------------------------------HHHHHHhcCCChHHHHHHHHH
Q psy16064 243 GL---------------------------------------------------------SYFQRILSLKSSTDAVNVSLI 265 (515)
Q Consensus 243 g~---------------------------------------------------------~~~qr~~aak~~~~ar~~~~~ 265 (515)
|. .++||+++.|+.+-|+.-.+.
T Consensus 201 glwi~vp~al~h~~~~di~~~a~hakyqk~wig~i~g~~e~~~wid~~lll~~ggipwq~yfqrvlss~sa~~aq~lsfl 280 (591)
T KOG3761|consen 201 GLWICVPAALSHDAAADIGFNAGHAKYQKDWIGEIDGFKETSLWIDCFLLLMFGGIPWQAYFQRVLSSKSAHGAQTLSFL 280 (591)
T ss_pred hhheechhhhcCchhhhcccccccccccCCceeccCCchhhHHHHHHHHHHHhcCCcHHHHHHHHHhccccchhHHHHHH
Confidence 88 589999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCC-CCCCC------CCCCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhH
Q psy16064 266 SATACFFIVIPAAIIGVLAKFVDWSKIP-GYDKP------FDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADS 338 (515)
Q Consensus 266 ~~~~~~~~~~~~~~iG~~~~~~~~~~~~-g~p~~------~~~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s 338 (515)
+++.++++.+|..++|.+++...|+... +.|++ .+..+.|+++|...+.+.|.|+.-+-+.+.-||.||++||
T Consensus 281 a~~gcilmaip~~ligai~~ntdw~~t~y~~~d~~tkvesip~d~~dmilpiv~qyl~p~~iaf~glgavsaavmssads 360 (591)
T KOG3761|consen 281 AAFGCILMAIPAALIGAIAANTDWNMTAYGLPDNGTKVESIPPDEADMILPIVFQYLCPRWIAFFGLGAVSAAVMSSADS 360 (591)
T ss_pred HHhchHheeCCHHHHhhhhccCcccccccCCCCCCcccccCCccccceehhHHHHhhchHHHhhhcchHHHHHHHhccch
Confidence 9999999999999999999988887665 44432 1234688999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhhhhhHHHHHHHhhcCCC
Q psy16064 339 VILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANH 418 (515)
Q Consensus 339 ~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~~i~~l~~~~~~~~~~~l~~~ll~gl~wkr~ 418 (515)
.+++.++++.+||||-.+||+++|||.+++.|+.++.++..+...++...++..++..+..+.+..++|.++..+|-||
T Consensus 361 silsaasmfa~ni~kls~r~~asdkeii~vmriai~~~g~~at~mal~~ksiyglwyl~adlvyiiifpqllcvl~m~~- 439 (591)
T KOG3761|consen 361 SILSAASMFAHNIWKLSFRPHASDKEIIIVMRIAIFCFGAMATAMALLIKSIYGLWYLCADLVYIIIFPQLLCVLFMKG- 439 (591)
T ss_pred HhhhHHHHHhhhhheeeeccCCCCceEEEEEEehhhhhhHHHHHHHHHHHHHHHHHHHhhceeEeEeccceeeEEEecC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhccCCCCCCccccCCCCcccc---ccccchhhHHHHHHHHHHhhhhhcccccccccccccc
Q psy16064 419 VNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQL---QQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLST 495 (515)
Q Consensus 419 ~t~~ga~~s~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~s~i~~vvvSl~t~~~~~~~~~~~ 495 (515)
.|..|+++|-..|+...+...++...+|..+.+|+.-+++ +.+.+|+...++.-|+...+.+|+..++-.|.-.++
T Consensus 440 sntygalagy~~gl~lri~ggep~l~l~~~~~ypg~y~d~ngiy~q~fpfkt~amlss~~t~~~is~~ae~lf~sg~l~- 518 (591)
T KOG3761|consen 440 SNTYGALAGYASGLFLRIIGGEPLLSLPAFFFYPGMYPDDNGIYNQKFPFKTLAMLSSFATIICISILAEKLFESGRLP- 518 (591)
T ss_pred CCcchhhhhhheeeEEEEecCcceeecchhhccCccccCCCcceeeecChhHHHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 9999999999999999888877777777777778743332 468899999999999999999999999888887777
Q ss_pred cccceeecccCC
Q psy16064 496 ERWDVLNAFPDV 507 (515)
Q Consensus 496 ~~~~~~~~~~~~ 507 (515)
.+||+++|...+
T Consensus 519 pe~dv~~~vv~~ 530 (591)
T KOG3761|consen 519 PELDVFDAVVAI 530 (591)
T ss_pred Cccchhhceeec
Confidence 889999985544
No 16
>KOG2349|consensus
Probab=100.00 E-value=3.8e-48 Score=414.14 Aligned_cols=379 Identities=24% Similarity=0.285 Sum_probs=335.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHH
Q psy16064 15 VYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGY 94 (515)
Q Consensus 15 ~~~~i~i~~y~~~~l~ig~~~~r~~~~~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~ 94 (515)
..|+.++++|+++..++|.|...|.|+++.|||++|||++.||-+++|+.||++|+..++|.|+..|++|+...+..+..
T Consensus 8 ~~d~~v~~l~~~~~~~ig~~~~~~~~~~t~~~y~l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~ 87 (585)
T KOG2349|consen 8 AADYSVFVLYFLLVMAIGLWFGFRTKRGTVEEYFLGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNA 87 (585)
T ss_pred ccchhHHHHHHHHhhhheeeEEEEcCCccHhhhhhcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998888779999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhh
Q psy16064 95 SLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLS 174 (515)
Q Consensus 95 ~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~ 174 (515)
.+..++.++++.|.+.|.+..|.+||+++||+++.|.+..+..++..+.|+...+. .|+
T Consensus 88 l~~~~~~~~~f~Pvf~~~~v~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y------------~pa--------- 146 (585)
T KOG2349|consen 88 LLSVLLLGWIFIPVFYRLGVTTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMY------------APA--------- 146 (585)
T ss_pred HHHHHhhheEEEEEEEecCeeehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEe------------ehH---------
Confidence 88888899999999999999999999999999998877777766666656544332 232
Q ss_pred hhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH----------
Q psy16064 175 SVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL---------- 244 (515)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~---------- 244 (515)
..+++.+|++.+...++...++++||..||+|||+|||++|.++|+.+.
T Consensus 147 ---------------------l~~~qvtg~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~ 205 (585)
T KOG2349|consen 147 ---------------------LAINQVTGINLYLIVVILGLICVFYTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMK 205 (585)
T ss_pred ---------------------HHHHHHhccCceeehHHHHHHHHHHHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehh
Confidence 5678899999999999999999999999999999999999999999877
Q ss_pred ----------------------------------------------------HHHHHHhcCCChHHHHHHHHHHHHHHHH
Q psy16064 245 ----------------------------------------------------SYFQRILSLKSSTDAVNVSLISATACFF 272 (515)
Q Consensus 245 ----------------------------------------------------~~~qr~~aak~~~~ar~~~~~~~~~~~~ 272 (515)
...||+++.||.|+||++++.......+
T Consensus 206 vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~slk~ak~~~~~~~~~~~l 285 (585)
T KOG2349|consen 206 VGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLPSLKHAKPSLLLFGYGVLL 285 (585)
T ss_pred cCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhccccHHHhhhhhhhhhhHHHH
Confidence 4689999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCc--hhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHH
Q psy16064 273 IVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTP--GWVTFFGLGAVSASVMSSADSVILGSGSMFTRN 350 (515)
Q Consensus 273 ~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp--~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~D 350 (515)
........|+..+..+++ +..+- +....++|+++|.++.+.+| |++.|++++++++|.|||++|.+|+.|+.+.+|
T Consensus 286 ~~~~~~~~G~i~~~~Y~~-Cdpl~-~g~v~~~D~~~P~fV~d~~~~~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~eD 363 (585)
T KOG2349|consen 286 IMFIMVFVGMIIYALYTD-CDPLC-GGLVGCPDQLLPLFVMDLMGHLPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLED 363 (585)
T ss_pred HHHhhcccceeEeeeccc-CCccc-ccccCCccccccHHHHHhcCCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 777788899998877643 21110 11346899999999999999 999999999999999999999999999999999
Q ss_pred hhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCChHHHHHH
Q psy16064 351 IYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGA---SIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSS 427 (515)
Q Consensus 351 i~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~---~i~~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ga~~s 427 (515)
++||+.| +.+|||..+..|+.+++.+++++..+...+ .+++......+..++++...+++|+|||| +|.+||++|
T Consensus 364 ~ik~~~k-~~se~~~~~~~r~~vvv~G~~si~~~fvv~~~~~vlq~~~si~g~~~gP~~gvF~Lgmf~pr-~N~kgA~~G 441 (585)
T KOG2349|consen 364 YIKPLRK-PLSERELNIAMRLFVVVLGLISIGLAFVVELLQQVLQYSQSIFGYLGGPLLGVFVLGMFVPR-VNEKGALVG 441 (585)
T ss_pred HHHhhcC-CcChHHHhhhhheeeeeehhHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhccc-cCCcchhHH
Confidence 9999544 899999999999999999999999998754 45566666667777888899999999999 999999999
Q ss_pred HHHHHHHHHHhc
Q psy16064 428 VVIGILLRITGG 439 (515)
Q Consensus 428 ~i~G~~~~~~~~ 439 (515)
++.|++...+..
T Consensus 442 li~~~~~~~wi~ 453 (585)
T KOG2349|consen 442 LIAGLLLMLWIS 453 (585)
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 17
>COG4146 Predicted symporter [General function prediction only]
Probab=100.00 E-value=2.5e-41 Score=337.06 Aligned_cols=413 Identities=19% Similarity=0.216 Sum_probs=328.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHH
Q psy16064 15 VYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGY 94 (515)
Q Consensus 15 ~~~~i~i~~y~~~~l~ig~~~~r~~~~~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~ 94 (515)
...+..++.|..+...+.||-.|+.+-+|.++|++|||+++..+++.|++-|+.|+...+|..+.+|..+.+...|....
T Consensus 3 ~i~i~sFl~~t~~Va~isW~Ktr~~Dl~ss~GYFLaGR~Lsg~VI~~SlvLTnLSTEQlvGln~~ayk~~~svmaWeVts 82 (571)
T COG4146 3 SITILSFLGVTLLVAIISWWKTRGTDLSSSKGYFLAGRSLSGLVIACSLVLTNLSTEQLVGLNGQAYKGNMSVMAWEVTS 82 (571)
T ss_pred hHHHHHHHHHHHHHHheeeeeccCCccccccceEeccCcccchhheehhhhhcccHHHhccccceeccCCeEEEEEEecc
Confidence 34555566666666666666666555467899999999999999999999999999999999999999998876555556
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhh
Q psy16064 95 SLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLS 174 (515)
Q Consensus 95 ~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~ 174 (515)
.+-..++++.+.||+-|.+..|+||++|+||+.+.|.+.+...++... +.|+|. .+|-.
T Consensus 83 ~i~L~flAl~~lprylK~GitTIPdFlE~RfD~~TR~Iis~lFLi~y~-----------------~~flPt----vLYsG 141 (571)
T COG4146 83 VIPLIFLALYFLPRYLKRGITTIPDFLEERFDKTTRMIISFLFLIAYG-----------------VCFLPT----VLYSG 141 (571)
T ss_pred hHHHHHHHHHHHHHHHhcCCccchHHHHHhhhhHHHHHHHHHHHHHHH-----------------HHhhhH----HHhhh
Confidence 666677888999999999999999999999999998887766554331 123443 23322
Q ss_pred hhhhhhhhhhhccccccccchhh--hHhhhCCchH----HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH----
Q psy16064 175 SVLSSLGKQAKASHYQVDLTGVS--LKVILGISDY----LSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL---- 244 (515)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~g~i--~~~~~gi~~~----~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~---- 244 (515)
++. +. .+ ++..+++++. ..++.++++-..|.++||+|+++.+|.++++.+++|.
T Consensus 142 Ala--~n--------------siF~l~~v~~IS~g~~i~~~viaiG~~g~~Yai~GGLkA~AvsDtiNgigLviGgLlvP 205 (571)
T COG4146 142 ALA--LN--------------SIFHLGEVLQISHGAAIWLLVIAIGLAGILYAIIGGLKAMAVSDTINGIGLVIGGLLVP 205 (571)
T ss_pred hHH--Hh--------------hhhchHhhhCcCcchHHHHHHHHHHHHHHHHHHHcchhheeeccccchhhHhhhhHHHH
Confidence 211 00 22 2345566654 4445566777899999999999999999999988876
Q ss_pred ----------------------------------------------------------HHHHHHhcCCChHHHHHHHHHH
Q psy16064 245 ----------------------------------------------------------SYFQRILSLKSSTDAVNVSLIS 266 (515)
Q Consensus 245 ----------------------------------------------------------~~~qr~~aak~~~~ar~~~~~~ 266 (515)
...||.+++||.+|.+|+.+.+
T Consensus 206 ifaLi~lG~Gsfa~G~~~itt~h~eKlNaIGg~~d~vPw~a~fTGll~vN~FYWcTNQ~IvQRtLaak~LaeGQKG~Lla 285 (571)
T COG4146 206 IFALIALGKGSFAQGIEQITTVHAEKLNAIGGPTDPVPWGAAFTGLLLVNTFYWCTNQGIVQRTLAAKSLAEGQKGALLA 285 (571)
T ss_pred HHHHHhhcCccHhhchhhhhccCHHHhcccCCCCCCCcHHHHHHhHhhhheeeeeccHHHHHHHHhhhhhhccccccHHH
Confidence 5789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhh
Q psy16064 267 ATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSM 346 (515)
Q Consensus 267 ~~~~~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~ 346 (515)
+.+...-...+.+.|++++..+. +.++.|+++|.++++.+|..+.|++.+.++.|.+||-++.+|++++.
T Consensus 286 a~fk~~~pl~LvLPGliafhlyg----------dL~~aDmaYP~LVn~VlPv~l~GFf~AvLFGAilStFN~fLNSa~Tl 355 (571)
T COG4146 286 AVFKMLDPLVLVLPGLIAFHLYG----------DLPKADMAYPTLVNNVLPVPLVGFFGAVLFGAILSTFNGFLNSASTL 355 (571)
T ss_pred HHHHHhchHHhhhhHHHHHHHhc----------cCCccccccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 99998888888999999998863 35689999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCChH
Q psy16064 347 FTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALS----GASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSY 422 (515)
Q Consensus 347 ~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~----~~~i~~l~~~~~~~~~~~l~~~ll~gl~wkr~~t~~ 422 (515)
++.|+|++.+|||++|+|.+..+|.....+++++++++-. ++.+..+..-..+....++...+..|+|.|| ...-
T Consensus 356 f~~diy~~I~k~na~e~eLv~~grkf~a~~Ai~sv~iaP~i~~apqGly~~~k~~nGfynvPiva~~ivGfF~k~-vpal 434 (571)
T COG4146 356 FSMDIYRRIIKQNAEEQELVTVGRKFGAFIAIVSVLIAPWIANAPQGLYSWMKQLNGFYNVPIVAIIIVGFFFKR-VPAL 434 (571)
T ss_pred hhhhhhhHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcccchhHHHHHHHHHHhh-cchh
Confidence 9999999999999999999999999999999999888854 3457777666666777788888999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCccccCCCCccccccccchhhHHHHHHHHHHhhhhhcccccccc
Q psy16064 423 GCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFE 489 (515)
Q Consensus 423 ga~~s~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~~~~ 489 (515)
++-..|..+.+......+ . . .. ..+........+..+.+++.++..+.|++.+
T Consensus 435 Aakva~~ihvilY~~i~~-------v--v----~~-~vnFlYVla~lF~inVvVMLviGflKpr~t~ 487 (571)
T COG4146 435 AAKVAMGIHVILYITINY-------V--V----KF-DVNFLYVLACLFCINVVVMLVIGFLKPRATP 487 (571)
T ss_pred HHHHHHHhhheeEeeEEE-------E--E----EE-EeeeehhHHHHHHHHhHHHHhhhcccCCCCc
Confidence 999998888766543210 0 0 00 1123333334667888999999888665544
No 18
>KOG2348|consensus
Probab=99.94 E-value=2.1e-27 Score=242.44 Aligned_cols=442 Identities=17% Similarity=0.215 Sum_probs=302.7
Q ss_pred CcCccccchhhHHHHHHHHHH-HHHHHHHHhhccCC-CChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhh
Q psy16064 7 ITGSRMIDVYGIAGILTFYSI-VLVVGIWAGTKQKN-HGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTG 84 (515)
Q Consensus 7 ~~~~~~~~~~~~i~i~~y~~~-~l~ig~~~~r~~~~-~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G 84 (515)
++.+.-.++-..+.+...|.. ++..-+..+|-++. ++.|.|-.||||...-+++...+++|...++++-.++.+|++|
T Consensus 4 ~~L~Qg~GY~IVlGlG~~FA~~mi~vt~llKry~~e~~tsE~FtTA~rsVkTGLiasaVVSsWtW~sTlLtSa~~ayqyG 83 (667)
T KOG2348|consen 4 TVLNQGVGYGIVLGLGAAFAIVMILVTYLLKRYVGEVQTSEHFTTASRSVKTGLIASAVVSSWTWASTLLTSAGKAYQYG 83 (667)
T ss_pred ccccCCcceEEEEechHHHHHHHHHHHHHHHHHhccccchhhhcccccccccceehhhhhhhhhhhHHHHhhccchhhhc
Confidence 344444444455555555654 45555555554442 6899999999999999999999999999999999999999999
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHh--cCCCCchHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHhhchhhhhhhh
Q psy16064 85 LLW-CQAPVGYSLTLVAGALIFAKPMRD--AGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLL 161 (515)
Q Consensus 85 ~~~-~~~~~g~~~~~~l~~~~~a~~~rr--~~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~ 161 (515)
.++ +|+..|..+-.++.. +++-..+| -|.+|.-|..+.|||...+...-+..+...+.-.++-+.+.+
T Consensus 84 V~G~~wYasga~vQIl~Ft-VlAie~Kr~APnAHT~~EiVkaR~G~~~H~vfL~yal~TNIlVtaMLL~gGS-------- 154 (667)
T KOG2348|consen 84 VSGSFWYASGATVQILLFT-VLAIEVKRKAPNAHTILEIVKARFGQASHGVFLFYALATNILVTAMLLLGGS-------- 154 (667)
T ss_pred ccchhhhhccchhhhHHHH-HHHHhhhhcCCCcchhhhhhHhhcCcccceEEEhhhhhhhHHHHHHHHhCch--------
Confidence 986 678877776666554 45555555 499999999999999865544333333344444555555554
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH
Q psy16064 162 FLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIV 241 (515)
Q Consensus 162 ~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ 241 (515)
..++.++|.|...+..+.-+-+++||.+||+|+.-.||-.+.++..
T Consensus 155 ----------------------------------avisalTGmn~vAa~FLlPlGVvvYTl~GGlKaTFLtdy~HtvIv~ 200 (667)
T KOG2348|consen 155 ----------------------------------AVISALTGMNTVAACFLLPLGVVVYTLFGGLKATFLTDYTHTVIVY 200 (667)
T ss_pred ----------------------------------hhhhhhccchhhhhhheeeeeEEEEEecCcchhhhhhhhhhhhHHH
Confidence 5788999999999888899999999999999999999999999877
Q ss_pred HHH--------------------------------------------------------------------HHHHHHhcC
Q psy16064 242 FGL--------------------------------------------------------------------SYFQRILSL 253 (515)
Q Consensus 242 ig~--------------------------------------------------------------------~~~qr~~aa 253 (515)
+.+ .+||+..++
T Consensus 201 iillvf~f~vYtss~~iGSp~kvYDllke~~~~~Pv~Gn~qGsYlTm~s~~~~i~~iinliGnFgTVFvDngYw~kAIaA 280 (667)
T KOG2348|consen 201 IILLVFLFVVYTSSKHIGSPGKVYDLLKEASKTHPVDGNYQGSYLTMTSRDAAIFGIINLIGNFGTVFVDNGYWQKAIAA 280 (667)
T ss_pred HHHHHHHHHhhhcccccCCcHHHHHHHHHHHhcCCCCCcccceEEEEEccCceEEEEEEeccCceeEEEcCchhHHHhcc
Confidence 654 689999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCCC--CCCccchHHHHHHHhCchhHHHHHHHHHHH
Q psy16064 254 KSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSK-IPGYDKPFD--MTESNSVLPLVLRYLTPGWVTFFGLGAVSA 330 (515)
Q Consensus 254 k~~~~ar~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~-~~g~p~~~~--~~~~d~~~p~~~~~~lp~~l~gl~l~~llA 330 (515)
|.....|...+.+..+..+-.....-.|+.+..+..+. .+.+|+|.. ..+...++|+-.-.++.-.-...-+.-++.
T Consensus 281 ~PasalkgY~lGGLaWfaVP~~~attmgL~~Lalen~p~fptyPdp~ss~q~s~Glvlp~aaiAlMGk~Ga~a~llmlFM 360 (667)
T KOG2348|consen 281 KPASALKGYFLGGLAWFAVPWLMATTMGLSCLALENNPVFPTYPDPVSSKQVSEGLVLPYAAIALMGKNGAAAGLLMLFM 360 (667)
T ss_pred CchhhccchhhcchHHHhHHHHHHHHhhhhhheeccCCCCCCCCCccchhhhccCCCChHHHHHHhcccchHHHHHHHHH
Confidence 88766665544443333332233334555555443111 113454432 345566788877777765444444455788
Q ss_pred HHHHhHhHHHHhhhhhHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhc--chhH-HHHHHHHHHhhhhhhHH
Q psy16064 331 SVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALS--GASI-YYLSVVCSDVVYVTLFP 407 (515)
Q Consensus 331 A~mST~~s~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~--~~~i-~~l~~~~~~~~~~~l~~ 407 (515)
|.-|-.++-+.+.|+.+++|||++|+||+++.||+++.+|.+.++++...-.+|.. ...+ ..++....++.-++-..
T Consensus 361 AvTSA~SaELIAvSSvfTYDIYr~Yi~PrAsGkell~~sh~avi~Fg~~M~~~av~l~y~gismg~iy~~mGili~~AV~ 440 (667)
T KOG2348|consen 361 AVTSATSAELIAVSSVFTYDIYRNYIRPRASGKELLYTSHVAVIIFGVAMGGLAVGLNYGGISMGWIYLFMGILIGPAVF 440 (667)
T ss_pred HHhcccchhheeehhhhehHHHHhhcCCccCcceeEEEeeeeeehhHHHHHhHhhhhhhcceeHHHHHHHHHHHhcchhH
Confidence 99999999999999999999999999999999999999999988888776666543 2332 23444444444444444
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHHHHhccCCCCCCccccCCCCcccc-ccccchh---hHHHHHHHHHHhhhhhcc
Q psy16064 408 QLVLVVHGANHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWYDYQL-QQQLFPF---KTMAMLLSAASHLLISKL 483 (515)
Q Consensus 408 ~ll~gl~wkr~~t~~ga~~s~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~---~~~~~~~s~i~~vvvSl~ 483 (515)
|+.+-++||| +|+.|+..|-..|.+.+++.+. ...-. .+.....+. ..+ -|. ..+++.-..+-.++.|++
T Consensus 441 pit~~l~~kk-mn~~~~iv~~~lG~i~~IitWl---~~ak~-~y~~~~vdtT~~n-~PmlaGNlv~llspaiyi~ilsy~ 514 (667)
T KOG2348|consen 441 PITLTLLWKK-MNKYGAIVGPPLGSITGIITWL---VSAKK-QYKNLTVDTTGLN-TPMLAGNLVGLLSPAIYIVILSYF 514 (667)
T ss_pred hHHHHHHHHH-hhhhhEeecCcccchhhhhhhh---hhhhh-ccceeEEecccCC-CccccchhhhhhchhhheeeeeEe
Confidence 5888899999 9999999998888888876531 11000 010000000 000 121 235666667777888988
Q ss_pred cccc-ccccccccccc
Q psy16064 484 AAIV-FEKKLLSTERW 498 (515)
Q Consensus 484 t~~~-~~~~~~~~~~~ 498 (515)
-||. .|.+..+ |.+
T Consensus 515 f~pqn~D~n~l~-e~~ 529 (667)
T KOG2348|consen 515 FPPQNYDWNNLN-EIF 529 (667)
T ss_pred cCCccCchhhhh-heE
Confidence 7544 3334444 444
No 19
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.47 E-value=0.0015 Score=70.49 Aligned_cols=88 Identities=10% Similarity=-0.019 Sum_probs=57.0
Q ss_pred HhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHHHHHHHHHHHH
Q psy16064 65 ATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLY 144 (515)
Q Consensus 65 at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~~ 144 (515)
++..+..++......+.++|++-+|..+-..+..++.- -.+-|+-...-.+..|..++||+++...+..+...+..+.+
T Consensus 45 ~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q-~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~ 123 (439)
T PRK00701 45 VGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQ-SLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMAT 123 (439)
T ss_pred hheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHH
Confidence 46677777777888888889888875432222222222 33344444566689999999999876665555555555666
Q ss_pred HHHHHHhhc
Q psy16064 145 LSSVLSSLG 153 (515)
Q Consensus 145 la~~l~a~g 153 (515)
...|+.+.+
T Consensus 124 ~~~e~~G~a 132 (439)
T PRK00701 124 DLAEVIGAA 132 (439)
T ss_pred HHHHHHHHH
Confidence 667776655
No 20
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.47 E-value=0.00025 Score=74.36 Aligned_cols=221 Identities=14% Similarity=0.158 Sum_probs=129.6
Q ss_pred HHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHhhchhhh
Q psy16064 79 SLFSTGLLWCQAPV-GYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAK 157 (515)
Q Consensus 79 ~~y~~G~~~~~~~~-g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~~la~~l~a~g~~~~ 157 (515)
.+.++|++-+|..+ ...+..+ . .-.+.|+--..-.+..|.+++|||++......+...+..+.+.+.++.+.+
T Consensus 7 aGA~~Gy~Llw~lll~~~~~~~-~-q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a---- 80 (358)
T PF01566_consen 7 AGAQYGYSLLWVLLLSNLLKYV-F-QEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA---- 80 (358)
T ss_pred hHHHHCHHHHHHHHHHHHHHHH-H-HHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 45567777666433 3323322 2 234455555667799999999999887777776666777777777777665
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhh--ccChhHHHHHHHH
Q psy16064 158 ASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTI--SGGLYSVSYTDVL 235 (515)
Q Consensus 158 ~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~--~GGl~av~~tD~i 235 (515)
..++.++|+|.+...++..+.+.+... .|++|-.-..-.+
T Consensus 81 --------------------------------------~al~ll~g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~ 122 (358)
T PF01566_consen 81 --------------------------------------IALNLLFGIPLWIWVLLVAVIAILLLWLSSGGYRRLERILKV 122 (358)
T ss_pred --------------------------------------HHHHhhcCCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 455666788888888777777776666 7887766555444
Q ss_pred HHHHHHHHH--------------------------------------------HHHH------HHhcC----CC--hHHH
Q psy16064 236 QLIFIVFGL--------------------------------------------SYFQ------RILSL----KS--STDA 259 (515)
Q Consensus 236 Q~iim~ig~--------------------------------------------~~~q------r~~aa----k~--~~~a 259 (515)
-..+|.+.. -++| |-... ++ .|..
T Consensus 123 lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~ 202 (358)
T PF01566_consen 123 LVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYA 202 (358)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHH
Confidence 444443222 1122 22222 11 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCc-hhHHHHHHHHHHHHHHHhHhH
Q psy16064 260 VNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTP-GWVTFFGLGAVSASVMSSADS 338 (515)
Q Consensus 260 r~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp-~~l~gl~l~~llAA~mST~~s 338 (515)
|+=...+.....++.....+.| +....++. .+..+.++.. ...+..+. ++-..++..|+++|..|+.-.
T Consensus 203 ~~D~~~g~~~~~li~~ai~i~~--A~~l~~~~-------~~~~~~~~~~-~~L~~~~G~~~a~~lF~igl~~a~fss~i~ 272 (358)
T PF01566_consen 203 RFDTIIGMIVSFLINVAILIVA--AAVLYPGG-------SEVETAAQAA-QALEPLLGSPWARYLFAIGLFAAGFSSSIT 272 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhcccc-------cchhhHHHHH-HHHHHhcCchHHHHhHHHHHHHHHHhhHHH
Confidence 4433343333333333333333 33222211 1122333333 44556777 788999999999999999987
Q ss_pred HHHhhhhhHHHHhhhh
Q psy16064 339 VILGSGSMFTRNIYHQ 354 (515)
Q Consensus 339 ~l~~~ss~~~~Di~~~ 354 (515)
...+.+..+ .|..+.
T Consensus 273 ~~~~~~~~~-~~~~~~ 287 (358)
T PF01566_consen 273 ATLAGAYVL-ADFLGW 287 (358)
T ss_pred hccccceeh-HhhhcC
Confidence 766665555 577644
No 21
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.36 E-value=0.00059 Score=72.64 Aligned_cols=282 Identities=12% Similarity=0.024 Sum_probs=149.8
Q ss_pred HHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH----H-H-HhcCCCCchHHHHHhhCccchhHHHH
Q psy16064 62 TLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAK----P-M-RDAGYITMLDPFQKTYGRRIGGLLFL 135 (515)
Q Consensus 62 s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~----~-~-rr~~~~T~~e~~~~Rfg~~~~~l~ai 135 (515)
++.+|.+|+.. +..|..+.++|+-. ..++..++.+ ..+..++ . . ++.+..+..|+.++-||+..+.+.++
T Consensus 11 ~l~gt~IGaGi-L~LP~~ag~~G~i~--~li~~l~~~p-l~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~ 86 (397)
T TIGR00814 11 GLYGTAIGAGV-LFLPIQAGLGGLWV--LVLMAIIAYP-LTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITL 86 (397)
T ss_pred HHHHHHHHHHH-HHHHHHHHhCHHHH--HHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHH
Confidence 45566666544 56676655555322 1222222222 2223333 2 2 33457899999999999988777666
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhh--CCchHHHHHHH
Q psy16064 136 PALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVIL--GISDYLSVTIS 213 (515)
Q Consensus 136 ~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~--gi~~~~~i~i~ 213 (515)
.-++...+.+.+...+.++ . .+..+...+ +.|++....+.
T Consensus 87 lY~~~~~~i~~aY~~~~~~------------------------~--------------~~~fl~~~~~~~~p~~~i~~li 128 (397)
T TIGR00814 87 LYFFAIYPILLIYSVAITN------------------------D--------------SASFLVNQLGTAPPLRGLLSLA 128 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------------H--------------HHHHHHHhcCCCCcHHHHHHHH
Confidence 5554444443333333331 0 002222223 34455445556
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHHHHHHH-----------------------------------------------HH
Q psy16064 214 TMFAVAYTISGGLYSVSYTDVLQLIFIVFGL-----------------------------------------------SY 246 (515)
Q Consensus 214 ~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~-----------------------------------------------~~ 246 (515)
.+++..|...+|.|.+...+.+-...+++.. ++
T Consensus 129 lv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl 208 (397)
T TIGR00814 129 LILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSF 208 (397)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHH
Confidence 6666689999999999988877775544322 22
Q ss_pred HH---HHhcCCC--hHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchh
Q psy16064 247 FQ---RILSLKS--STDAVNVSLISATACFFIVIPAAI--IGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGW 319 (515)
Q Consensus 247 ~q---r~~aak~--~~~ar~~~~~~~~~~~~~~~~~~~--iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~ 319 (515)
.+ |-+..|| +|+.||....+.....+++....+ .|........+ ....+.+ .+..+.++.-.+.
T Consensus 209 ~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~--------a~~~nis-~Ls~l~~~~~~~~ 279 (397)
T TIGR00814 209 AISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVA--------AKEQNIS-ILSYLANHFNAAW 279 (397)
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH--------HHHcCcH-HHHHHHhhcCCcH
Confidence 21 2233234 678888888877665554444332 22222111100 0001211 3455555555566
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHhhhhhHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q psy16064 320 VTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSV 395 (515)
Q Consensus 320 l~gl~l~~llAA~mST~~s~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~~i~~l~~ 395 (515)
+.-+...--.-|..++--+..+...-.+ +|+..+..+++.+.++..+..|+..+++-+..-..+...++++++..
T Consensus 280 i~~~~~~f~~~Ai~tSFlG~~lg~~e~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~ 354 (397)
T TIGR00814 280 ISYAGPIVAIVAISKSFFGHYLGAREGL-NGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIE 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5533332223355555555555544444 56663322322222344556777777777788888888899998876
No 22
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.08 E-value=0.0074 Score=63.01 Aligned_cols=148 Identities=15% Similarity=0.123 Sum_probs=89.6
Q ss_pred CCChHHHHHHHHHhhhhhhhhccccHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchh
Q psy16064 53 SIGKIVGVLTLIATWGGGSYFTGTAESLFST-GLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGG 131 (515)
Q Consensus 53 ~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~-G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~ 131 (515)
+++.+-......++.+|+. +...|+...+. |-++....+...+..++.++.+++..+|++..+..|+.++.+|+....
T Consensus 2 ~is~~q~~~l~~~~~iG~g-il~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSG-LLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGR 80 (359)
T ss_pred cCcHHHHHHHHHHHHHHHH-HHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHH
Confidence 4666666666677777655 56666666554 434332333333444455678888888887789999999999987665
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHh-hhCCchHHHH
Q psy16064 132 LLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKV-ILGISDYLSV 210 (515)
Q Consensus 132 l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~-~~gi~~~~~i 210 (515)
+.++..++......+......+ ...+. .++-.+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~l~~tp~~~~ 118 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFA------------------------------------------DFIKTYLLPRTPIIVI 118 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHHHHhcCCCCHHHH
Confidence 5554433333222223322222 22222 2222334444
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHH
Q psy16064 211 TISTMFAVAYTISGGLYSVSYTDVLQLIFIVFG 243 (515)
Q Consensus 211 ~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig 243 (515)
.+..+++..|...+|.+....+..+-..+.++.
T Consensus 119 ~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 119 IILIIIVSIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 556667778889999999998888776655443
No 23
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=98.07 E-value=0.023 Score=60.39 Aligned_cols=88 Identities=6% Similarity=-0.042 Sum_probs=46.8
Q ss_pred HhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHHHHHHHHHHHH
Q psy16064 65 ATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLY 144 (515)
Q Consensus 65 at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~~ 144 (515)
++.++..+.......+.++|+.-+|..+-..+..++.- -.+-|+-...-.+..|.+++||+++.+....+...+..+.+
T Consensus 15 ~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q-~~aaRlg~vTg~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~ 93 (390)
T TIGR01197 15 IAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQ-RLCARLGVVTGLDLAEVCREHYPKVPRITLWILAELAIIAT 93 (390)
T ss_pred HHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH-HHHHHheeecCCCHHHHHHHHCCCchHHHHHHHHHHHHHHH
Confidence 44455555556666667778777774432222222222 22333433455679999999999865443332222222334
Q ss_pred HHHHHHhhc
Q psy16064 145 LSSVLSSLG 153 (515)
Q Consensus 145 la~~l~a~g 153 (515)
...++.+.+
T Consensus 94 ~~~e~~G~a 102 (390)
T TIGR01197 94 DMAEVIGTA 102 (390)
T ss_pred HHHHHHHHH
Confidence 444544443
No 24
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=97.99 E-value=0.0095 Score=61.34 Aligned_cols=145 Identities=15% Similarity=0.101 Sum_probs=91.0
Q ss_pred ChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHH
Q psy16064 55 GKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLF 134 (515)
Q Consensus 55 ~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~a 134 (515)
+..-....+..+.+|...+......+.+.| +++...+...+...+..++..+..||++..|..|+.++++|+....+..
T Consensus 3 S~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~ 81 (320)
T PF03845_consen 3 SPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIIN 81 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHH
Confidence 344444555555555554444444444444 4333333333333445567778889999999999999999988766655
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhH-hhhCCchHHHHHHH
Q psy16064 135 LPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLK-VILGISDYLSVTIS 213 (515)
Q Consensus 135 i~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~-~~~gi~~~~~i~i~ 213 (515)
+..++..+...+..+...+ ...+ ..+.-.|...+...
T Consensus 82 ~~~~l~~l~~~~~~lr~~~------------------------------------------~~i~~~~lp~TP~~~i~~~ 119 (320)
T PF03845_consen 82 LLYILYFLLISALVLREFS------------------------------------------EFIKTYLLPETPIWVIILL 119 (320)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------------------------------HHHHHHhcCcCCHHHHHHH
Confidence 5555545445555554443 2333 35565667777778
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHHHHH
Q psy16064 214 TMFAVAYTISGGLYSVSYTDVLQLIFIVF 242 (515)
Q Consensus 214 ~~iv~~Yt~~GGl~av~~tD~iQ~iim~i 242 (515)
..++..|...+|+++.+.+..+-..++++
T Consensus 120 ~ll~~~y~a~~G~e~i~R~~~~~~~~~~i 148 (320)
T PF03845_consen 120 FLLVAAYAARKGIEVIARVAEILFPIFLI 148 (320)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999854444444333
No 25
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.96 E-value=0.011 Score=63.10 Aligned_cols=173 Identities=14% Similarity=0.105 Sum_probs=102.6
Q ss_pred HHHHHHHhhhhhhhhccccHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHhhCccchhHHHHH
Q psy16064 59 GVLTLIATWGGGSYFTGTAESLFSTGLLWCQ-APVGYSLTLVAGALIFAKPMRD-AGYITMLDPFQKTYGRRIGGLLFLP 136 (515)
Q Consensus 59 ~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~-~~~g~~~~~~l~~~~~a~~~rr-~~~~T~~e~~~~Rfg~~~~~l~ai~ 136 (515)
..+.+++|.+|+. .++.|-.+...|+.... ........+...++.+++-..+ .+..+..|+-++.+|++.+.+..+.
T Consensus 8 ~~~li~GTaIGAG-mLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~~~ 86 (394)
T PF03222_consen 8 GVLLIAGTAIGAG-MLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIGIS 86 (394)
T ss_pred HHHHHHHccHhHH-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHH
Confidence 3444566666643 56778777777764322 2222222333455566665544 4788999999999999887776665
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhh------hCCchHHHH
Q psy16064 137 ALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVI------LGISDYLSV 210 (515)
Q Consensus 137 ~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~------~gi~~~~~i 210 (515)
.++.....+.+...+.| .+++.. .+++++.+.
T Consensus 87 ~~~~~y~ll~AYisg~g------------------------------------------~~~~~~l~~~~~~~~~~~~~~ 124 (394)
T PF03222_consen 87 YLFLLYALLVAYISGGG------------------------------------------SILSSLLGNQLGTDLSPWLSS 124 (394)
T ss_pred HHHHHHHHHHHHHHccH------------------------------------------HHHHHHHHHhcCCCCcHHHHH
Confidence 55444444555555555 222222 356778877
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH----------------------------------------------
Q psy16064 211 TISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL---------------------------------------------- 244 (515)
Q Consensus 211 ~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~---------------------------------------------- 244 (515)
++..++....+.+ |.|.+-..+.+-...+++..
T Consensus 125 ~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~iv 203 (394)
T PF03222_consen 125 LLFTIIFGGIVYF-GTKAVDRINRVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIV 203 (394)
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 7777776666555 45655555555444444332
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q psy16064 245 SYFQRILSLKSSTDAVNVSLISATACFFIVIP 276 (515)
Q Consensus 245 ~~~qr~~aak~~~~ar~~~~~~~~~~~~~~~~ 276 (515)
..+.|++ .+|+|+.||+...+.....++++.
T Consensus 204 Psl~~~~-~~d~~k~~~ai~~Gs~i~lv~yl~ 234 (394)
T PF03222_consen 204 PSLVKYL-GGDPKKIRKAIIIGSLIPLVMYLL 234 (394)
T ss_pred HHHHHHh-CccHHHHHHHHHHHHHHHHHHHHH
Confidence 1223444 478899999999877665544433
No 26
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.92 E-value=0.048 Score=58.28 Aligned_cols=119 Identities=11% Similarity=0.105 Sum_probs=69.6
Q ss_pred hhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHHHHHHHHHHHHH
Q psy16064 66 TWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYL 145 (515)
Q Consensus 66 t~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~~l 145 (515)
+.+....+......+.++|++-.|..+-..+...+.- -+.-|+-...-.+.+|-.++||+++......+...+..+..-
T Consensus 29 a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q-~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~ 107 (416)
T COG1914 29 AYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQ-ELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATD 107 (416)
T ss_pred hccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 4455555566666777778776664433222222222 222333334466899999999999977666555555554444
Q ss_pred HHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccC
Q psy16064 146 SSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGG 225 (515)
Q Consensus 146 a~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GG 225 (515)
..+..+.+ .-++.++|+|..++.++.++.+.+--..+|
T Consensus 108 iae~~G~a------------------------------------------ial~ll~~ip~~~g~iItav~~~iil~~~~ 145 (416)
T COG1914 108 IAEVAGIA------------------------------------------IALNLLFGIPLIIGAVITAVDVLIILLLKG 145 (416)
T ss_pred HHHHHHHH------------------------------------------HHHHHHcCChHHHHHHHHHHHHHHHHHhcc
Confidence 45555544 345566677777777666665555444443
Q ss_pred hh
Q psy16064 226 LY 227 (515)
Q Consensus 226 l~ 227 (515)
.|
T Consensus 146 ~r 147 (416)
T COG1914 146 YR 147 (416)
T ss_pred hH
Confidence 43
No 27
>TIGR00909 2A0306 amino acid transporter.
Probab=97.92 E-value=0.015 Score=62.18 Aligned_cols=101 Identities=16% Similarity=-0.008 Sum_probs=57.6
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHhhCccc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGY-ITMLDPFQKTYGRRI 129 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~~-~T~~e~~~~Rfg~~~ 129 (515)
.|+++.+-......++.+++..+..........|....+..+-..+...+.++.+++.-++.+. -...+|.++.+|++.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHH
Confidence 4778888877777777777655554433333334433221111223333455566666666433 477899999999887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q psy16064 130 GGLLFLPALLGDMLYLSSVLSS 151 (515)
Q Consensus 130 ~~l~ai~~ii~~~~~la~~l~a 151 (515)
..+.+...++......+....+
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~ 103 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVG 103 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555444444444333
No 28
>PRK11017 codB cytosine permease; Provisional
Probab=97.89 E-value=0.043 Score=58.62 Aligned_cols=39 Identities=8% Similarity=0.001 Sum_probs=25.6
Q ss_pred CCchHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHhhc
Q psy16064 115 ITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLG 153 (515)
Q Consensus 115 ~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~~la~~l~a~g 153 (515)
.+.+..-|.-||.+...+.++...+..+.|.+.|..-.+
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~ 109 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFA 109 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 355666677788775555555556667778888765544
No 29
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=97.82 E-value=0.071 Score=56.95 Aligned_cols=178 Identities=13% Similarity=0.044 Sum_probs=95.7
Q ss_pred HHHHHHHhhhhhhhhccccHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHhhCccchhHHHHH
Q psy16064 59 GVLTLIATWGGGSYFTGTAESLFSTGLLWCQ-APVGYSLTLVAGALIFAKPMRD-AGYITMLDPFQKTYGRRIGGLLFLP 136 (515)
Q Consensus 59 ~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~-~~~g~~~~~~l~~~~~a~~~rr-~~~~T~~e~~~~Rfg~~~~~l~ai~ 136 (515)
..+.+.+|.+|+. .++.|-.....|+.... ..+.....+...+..+++-..+ .+..+..++-++.+|++.+.+..+.
T Consensus 8 ~~~li~GTaIGAG-mLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~~~~ 86 (403)
T PRK15132 8 SIFIVAGTTIGAG-MLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFS 86 (403)
T ss_pred HHHHHHhcchhHH-HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHHHHH
Confidence 4456677777754 35666555555553321 1111112233344455664333 3456789999999999887766555
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhh--CCchHHHHHHHH
Q psy16064 137 ALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVIL--GISDYLSVTIST 214 (515)
Q Consensus 137 ~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~--gi~~~~~i~i~~ 214 (515)
-.+...+.+.+...+.|.+ + ...++..+ ++|.+.+.+...
T Consensus 87 y~fl~y~ll~AYisg~g~i------------------------l--------------~~~l~~~~~~~i~~~~~~l~F~ 128 (403)
T PRK15132 87 MMFLMYALTAAYISGAGEL------------------------L--------------ASSISDWTGISMSPTAGVLLFT 128 (403)
T ss_pred HHHHHHHHHHHHHhCcHHH------------------------H--------------HHHHHHhccCCCChHHHHHHHH
Confidence 4443434444444444410 0 01222222 346666666665
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHh
Q psy16064 215 MFAVAYTISGGLYSVSYTDVLQLIFIVFGL-------------------------------------------SYFQRIL 251 (515)
Q Consensus 215 ~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~-------------------------------------------~~~qr~~ 251 (515)
++... ...-|.|.+.+.+.+-...|++.. .-..|++
T Consensus 129 ~~~~~-iv~~g~~~v~~~n~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~ 207 (403)
T PRK15132 129 LVAGG-VVCVGTSSVDLFNRFLFSAKIIFLVVMLALMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYM 207 (403)
T ss_pred HHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHh
Confidence 55555 555576766555544443333222 1223444
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHH
Q psy16064 252 SLKSSTDAVNVSLISATACFFIVIPA 277 (515)
Q Consensus 252 aak~~~~ar~~~~~~~~~~~~~~~~~ 277 (515)
.+|+|+.||+.+.+...-.++++.+
T Consensus 208 -~~~~~~~~k~i~~Gs~i~li~yl~W 232 (403)
T PRK15132 208 -GGNIRKLRWVFIIGSAIPLVAYIFW 232 (403)
T ss_pred -CcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999998877665555443
No 30
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.81 E-value=0.085 Score=57.38 Aligned_cols=86 Identities=16% Similarity=0.077 Sum_probs=55.3
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhh-hhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC--CCchHHHHHhhC
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFST-GLLW-CQAPVGYSLTLVAGALIFAKPMRDAGY--ITMLDPFQKTYG 126 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~-G~~~-~~~~~g~~~~~~l~~~~~a~~~rr~~~--~T~~e~~~~Rfg 126 (515)
.|+++.+-.....+++.+|+..|.. |+...+. |... .+..+-..+...+.++.+++.-++.+. =..++|.++.||
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~-~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSL-PQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHh-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 5789999998888888888776554 4444443 3322 221122223444566777777777655 348999999999
Q ss_pred ccchhHHHHHH
Q psy16064 127 RRIGGLLFLPA 137 (515)
Q Consensus 127 ~~~~~l~ai~~ 137 (515)
+....+.+...
T Consensus 85 ~~~gf~~gw~~ 95 (473)
T TIGR00905 85 PYIGFMSGWGY 95 (473)
T ss_pred cccHHHHHHHH
Confidence 98765555543
No 31
>PRK11021 putative transporter; Provisional
Probab=97.71 E-value=0.1 Score=55.50 Aligned_cols=83 Identities=19% Similarity=0.050 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhCccchhHH
Q psy16064 55 GKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYGRRIGGLL 133 (515)
Q Consensus 55 ~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg~~~~~l~ 133 (515)
|.|-...-.+++.+|+..|+.........|-...+..+-..+...+.++-+++.-++. +.=...+|.++.||++.....
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~~ 81 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRVT 81 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHHH
Confidence 5566666677888888777776655444464444322223344555666677666553 334678899999999875555
Q ss_pred HHHH
Q psy16064 134 FLPA 137 (515)
Q Consensus 134 ai~~ 137 (515)
+...
T Consensus 82 gw~~ 85 (410)
T PRK11021 82 GWLF 85 (410)
T ss_pred HHHH
Confidence 5443
No 32
>PRK15049 L-asparagine permease; Provisional
Probab=97.68 E-value=0.14 Score=56.23 Aligned_cols=90 Identities=10% Similarity=0.001 Sum_probs=59.5
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhCccc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYGRRI 129 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg~~~ 129 (515)
.|+++.+-..+-..+..+++.-|++........|-......+...+...+.+.-+++.-.+. ..-+..+|.++.+|++.
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~~~ 106 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKA 106 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcHh
Confidence 57899998888888899999999988877766676543321222334444555566665554 34578889999999876
Q ss_pred hhHHHHHHHHH
Q psy16064 130 GGLLFLPALLG 140 (515)
Q Consensus 130 ~~l~ai~~ii~ 140 (515)
..+.+....+.
T Consensus 107 gf~~GW~~~l~ 117 (499)
T PRK15049 107 AYVAGWMYFIN 117 (499)
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 33
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=97.62 E-value=0.051 Score=57.18 Aligned_cols=67 Identities=9% Similarity=0.025 Sum_probs=40.8
Q ss_pred hhccccHHHhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHhhCccchhHHHHHHHH
Q psy16064 72 YFTGTAESLFSTGLLWCQ--APVGYSLTLVAGALIFAKPMRDAG-YITMLDPFQKTYGRRIGGLLFLPALL 139 (515)
Q Consensus 72 ~~ig~~g~~y~~G~~~~~--~~~g~~~~~~l~~~~~a~~~rr~~-~~T~~e~~~~Rfg~~~~~l~ai~~ii 139 (515)
..++.|+.....|....+ ...++. .....++.+++-.+|.+ ..+..|+.++.+|+..+.+.++..++
T Consensus 14 GIl~lP~~~a~~g~~~~~~~~i~~~~-~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~~ 83 (381)
T TIGR00837 14 GMLALPTSTAGAWFIWTLLLLILLWF-LMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLLF 83 (381)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHHH
Confidence 345667666666543322 222333 33345566777766654 67899999999998876666554433
No 34
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.43 E-value=0.23 Score=52.57 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=84.3
Q ss_pred HHhcCCChHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHH
Q psy16064 249 RILSLKSSTDAVNVSLISAT----ACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFG 324 (515)
Q Consensus 249 r~~aak~~~~ar~~~~~~~~----~~~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~ 324 (515)
|-..-||+|+-.|....++. ....++..+..+|....... .+..|.+++.....++++.+.-..++
T Consensus 204 ~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~----------~~~~~~~~~l~~~a~~~~G~~G~~ll 273 (378)
T TIGR00796 204 RSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAA----------GDAVNGAQILSAYSQHLFGSLGSFLL 273 (378)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhh----------cccCCcHHHHHHHHHHHcchhHHHHH
Confidence 44456777766655555444 33344444444454332211 12246888899999999998877777
Q ss_pred HHHHHHHHHHhHhHHHHhhhhhHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHhhhh
Q psy16064 325 LGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSG-ASIYYLSVVCSDVVYV 403 (515)
Q Consensus 325 l~~llAA~mST~~s~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~-~~i~~l~~~~~~~~~~ 403 (515)
.+.+.-|++.|+.+...+.+..+.+. .|+.+-| ...+...+.+..++... +.+.++..-.....+.
T Consensus 274 ~i~v~lACLtT~iGli~~~a~~f~~~------~~k~~y~-------~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP 340 (378)
T TIGR00796 274 GLIITLACLTTAVGLTTACSEYFHKL------VPKLSYK-------TWVIVFTLFSFIVANLGLTQIISISIPVLMIIYP 340 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCHH-------HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 78888899999999999866655432 1223333 23445556666666543 5566655444334444
Q ss_pred hhHHHHHHHhhcC
Q psy16064 404 TLFPQLVLVVHGA 416 (515)
Q Consensus 404 ~l~~~ll~gl~wk 416 (515)
.....+++.++.|
T Consensus 341 ~~i~lill~ll~~ 353 (378)
T TIGR00796 341 LAIVLILLSFLRK 353 (378)
T ss_pred HHHHHHHHHHHHH
Confidence 4434445554444
No 35
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.42 E-value=0.27 Score=52.98 Aligned_cols=85 Identities=16% Similarity=0.072 Sum_probs=55.1
Q ss_pred hCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHhhCcc
Q psy16064 50 AGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGY-ITMLDPFQKTYGRR 128 (515)
Q Consensus 50 aGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~~-~T~~e~~~~Rfg~~ 128 (515)
-.|+++.+-.....+++.+|+..|...+ ...+.|-...|..+...++.+..++.+++.-.+.+. =..++|.++.||+.
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~-~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~ 84 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPA-NLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPF 84 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCch
Confidence 3678999988888888989888877754 444455443332222234445566677777666533 37888999999987
Q ss_pred chhHHHH
Q psy16064 129 IGGLLFL 135 (515)
Q Consensus 129 ~~~l~ai 135 (515)
...+.+.
T Consensus 85 ~gf~~gw 91 (445)
T PRK10644 85 LGYQTNV 91 (445)
T ss_pred HHHHHHH
Confidence 6544443
No 36
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.41 E-value=0.048 Score=58.26 Aligned_cols=143 Identities=16% Similarity=0.149 Sum_probs=90.8
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHH-HHHHHHHHH--HHHHHHHHHHhcCCC-----CchHHHH
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAP-VGYSLTLVA--GALIFAKPMRDAGYI-----TMLDPFQ 122 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~-~g~~~~~~l--~~~~~a~~~rr~~~~-----T~~e~~~ 122 (515)
+++++++-...+..|+.++...+.|.+......|.....|. +...+|+.. .=..++-++|+.+-. .+.-|++
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~ 95 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIE 95 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHH
Confidence 55899999999999999999999999988888887664333 333355432 123456677775432 2667778
Q ss_pred HhhCccc-hhHHHHHHHHHH-HHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHh
Q psy16064 123 KTYGRRI-GGLLFLPALLGD-MLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKV 200 (515)
Q Consensus 123 ~Rfg~~~-~~l~ai~~ii~~-~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~ 200 (515)
+..|+|. ..+.++..+... ...-..|..++. ..++.
T Consensus 96 ~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~------------------------------------------~~~~~ 133 (416)
T PF01235_consen 96 KGLGSKWLAILFAIFLIIAFGIGFNMVQANSIA------------------------------------------DALSS 133 (416)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhhHHHHHHHH------------------------------------------HHHHh
Confidence 8888774 333343322111 111234444433 45667
Q ss_pred hhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q psy16064 201 ILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLI 238 (515)
Q Consensus 201 ~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~i 238 (515)
.+++|++..-+ ...+.+..++.||.|.+. ++-+-+
T Consensus 134 ~f~i~~~~~gi-~l~~l~~~vi~GGikrI~--~v~~~l 168 (416)
T PF01235_consen 134 AFGIPPWITGI-ILAILVALVIFGGIKRIA--KVSEKL 168 (416)
T ss_pred hccccHHHHHH-HHHHHHHHHHHcchhHHH--HHHHHH
Confidence 78999877654 445556788999999866 444444
No 37
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.39 E-value=0.23 Score=53.56 Aligned_cols=104 Identities=13% Similarity=-0.039 Sum_probs=67.7
Q ss_pred hCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHhhCcc
Q psy16064 50 AGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAG-YITMLDPFQKTYGRR 128 (515)
Q Consensus 50 aGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~-~~T~~e~~~~Rfg~~ 128 (515)
=.|+++.+-..+-..++.+++..|++........|....+..+...+...+.++-+++.-++.+ .-+..+|.++.||+.
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~~ 89 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGRW 89 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcH
Confidence 4789999999888889999988888876666666654433222233444556667777766643 346789999999987
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhc
Q psy16064 129 IGGLLFLPALLGDMLYLSSVLSSLG 153 (515)
Q Consensus 129 ~~~l~ai~~ii~~~~~la~~l~a~g 153 (515)
...+.+....+......+.+..+.+
T Consensus 90 ~gf~~gw~~~~~~~~~~~~~~~~~~ 114 (452)
T TIGR01773 90 AGFTIGWLYWWFWVLVIPLEAIAAA 114 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555544444334444444433
No 38
>PRK10249 phenylalanine transporter; Provisional
Probab=97.38 E-value=0.15 Score=55.21 Aligned_cols=103 Identities=13% Similarity=-0.063 Sum_probs=64.3
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhCccc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYGRRI 129 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg~~~ 129 (515)
.|+++.+-..+-..+..+++.-|++........|-...+..+...+...+.+.-+++.-.+. ..=+..+|.+++||+..
T Consensus 20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~~~ 99 (458)
T PRK10249 20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFA 99 (458)
T ss_pred hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHH
Confidence 47888888877778888888888877665555565433321222233344555666665553 23367889999999887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc
Q psy16064 130 GGLLFLPALLGDMLYLSSVLSSLG 153 (515)
Q Consensus 130 ~~l~ai~~ii~~~~~la~~l~a~g 153 (515)
....+....+........+..+.+
T Consensus 100 gf~~gw~~~~~~~~~~~~~~~a~~ 123 (458)
T PRK10249 100 GFLSGWNYWVMFVLVGMAELTAAG 123 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555544444455555444
No 39
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.33 E-value=0.35 Score=52.50 Aligned_cols=85 Identities=11% Similarity=0.020 Sum_probs=55.8
Q ss_pred CCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCC--CchHHHHHhhCcc
Q psy16064 52 RSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLW-CQAPVGYSLTLVAGALIFAKPMRDAGYI--TMLDPFQKTYGRR 128 (515)
Q Consensus 52 R~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~-~~~~~g~~~~~~l~~~~~a~~~rr~~~~--T~~e~~~~Rfg~~ 128 (515)
|+++.+-.....+++.+|+..|......+...|... .+..+...++..+.++.+++.-++.+.. ...+|.++.||+.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 567888777777788888776666554444445432 2212233345555677888888887653 6999999999998
Q ss_pred chhHHHHH
Q psy16064 129 IGGLLFLP 136 (515)
Q Consensus 129 ~~~l~ai~ 136 (515)
...+.+..
T Consensus 81 ~gf~~gw~ 88 (468)
T TIGR03810 81 MGFISAWG 88 (468)
T ss_pred HHHHHHHH
Confidence 65555543
No 40
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.31 E-value=0.37 Score=52.19 Aligned_cols=104 Identities=13% Similarity=-0.042 Sum_probs=65.6
Q ss_pred hCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhCcc
Q psy16064 50 AGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYGRR 128 (515)
Q Consensus 50 aGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg~~ 128 (515)
-.|+++.+-..+-..++.+++.-|++.....-..|....|..+...+...+.+.-+++.-.+. ..-+.++|-++.||+.
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~~ 89 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSF 89 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcH
Confidence 468999999888888888888877777766555565433322222233344555556665543 3346788888888877
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhc
Q psy16064 129 IGGLLFLPALLGDMLYLSSVLSSLG 153 (515)
Q Consensus 129 ~~~l~ai~~ii~~~~~la~~l~a~g 153 (515)
.....+....+......+.+..+.+
T Consensus 90 ~gf~~Gw~~~~~~~~~~~~~~~~~~ 114 (456)
T PRK10238 90 AGFASGWNYWVLYVLVAMAELTAVG 114 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655555555555655555
No 41
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.4 Score=51.58 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHhh--CccchhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhh
Q psy16064 95 SLTLVAGALIFAKPMRDAGYITMLDPFQKTY--GRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLY 172 (515)
Q Consensus 95 ~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rf--g~~~~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~ 172 (515)
.+|.++...+.+..-..-...-.|+....|| |.+...+-++...+.++.|.+.+....|
T Consensus 59 llG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~------------------- 119 (442)
T COG1457 59 LLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSG------------------- 119 (442)
T ss_pred HHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhc-------------------
Confidence 3444444433333333333344566666664 5555666677777777888887766555
Q ss_pred hhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH
Q psy16064 173 LSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIV 241 (515)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ 241 (515)
.......++|.+..+++.+++++.-+.+ |.|..-.-+.+-...+.
T Consensus 120 -----------------------~a~~~~~~~~~~~~ili~g~l~~l~~if-G~r~l~~l~~~a~~~~~ 164 (442)
T COG1457 120 -----------------------IAIGSGTGLPVWAGILIIGVLMTLVTIF-GYRALHKLERIAVPLLL 164 (442)
T ss_pred -----------------------cccccCCCCcHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 2222337899999999888888777665 57777666666555544
No 42
>PRK10655 potE putrescine transporter; Provisional
Probab=97.21 E-value=0.44 Score=51.11 Aligned_cols=85 Identities=13% Similarity=-0.028 Sum_probs=51.0
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhCccc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYGRRI 129 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg~~~ 129 (515)
.|+++.+-.....+++.+|+.-|.. |+...+.|-...+.-+...+...+.++-+++.-.+. ..=...+|.++.||+..
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~-p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~ 83 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIML-PTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSG 83 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHh-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcch
Confidence 4678888887777788888666654 444555565443321222233344455666644332 23356899999999876
Q ss_pred hhHHHHH
Q psy16064 130 GGLLFLP 136 (515)
Q Consensus 130 ~~l~ai~ 136 (515)
..+.+..
T Consensus 84 gf~~gw~ 90 (438)
T PRK10655 84 NFMANYT 90 (438)
T ss_pred HHHHHHH
Confidence 5555544
No 43
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.19 E-value=0.059 Score=57.81 Aligned_cols=165 Identities=16% Similarity=0.103 Sum_probs=99.9
Q ss_pred HHhcCCChHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHH
Q psy16064 249 RILSLKSSTDAVNVSLISAT----ACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFG 324 (515)
Q Consensus 249 r~~aak~~~~ar~~~~~~~~----~~~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~ 324 (515)
|-...+|+|+.+|....+++ ...+++..+..+|.......+ +..|..+++-.+.++++++.-..++
T Consensus 210 ~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~----------~~~~g~~lL~~i~~~~~G~~G~~ll 279 (427)
T PF05525_consen 210 RQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFP----------DDINGAELLSQIANHLFGSAGQILL 279 (427)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccccc----------CCCCHHHHHHHHHHHHcChhHHHHH
Confidence 44456677877776665554 344555555555544433221 2467888999999999998777777
Q ss_pred HHHHHHHHHHhHhHHHHhhhhhHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHhhhh
Q psy16064 325 LGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSG-ASIYYLSVVCSDVVYV 403 (515)
Q Consensus 325 l~~llAA~mST~~s~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~-~~i~~l~~~~~~~~~~ 403 (515)
...+.-|++.|+-+...+++..+.+ ..+ +.+- |..+++..+++..+|... +.+.++..=.....+-
T Consensus 280 ~iiv~lACLTTaIGL~~a~a~yf~~-~~~-----kisY-------~~~v~i~~i~S~~ian~Gl~~Ii~~s~PiL~~iYP 346 (427)
T PF05525_consen 280 GIIVFLACLTTAIGLISACAEYFSE-LFP-----KISY-------KVWVIIFTIFSFIIANLGLDQIIKISVPILMFIYP 346 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-----ccCh-------HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhH
Confidence 7778889999999998888777754 322 2333 334466677888888653 5566554433344444
Q ss_pred hhHHHHHHHhhcCCC-----CChHHHHHHHHHHHHHHH
Q psy16064 404 TLFPQLVLVVHGANH-----VNSYGCLSSVVIGILLRI 436 (515)
Q Consensus 404 ~l~~~ll~gl~wkr~-----~t~~ga~~s~i~G~~~~~ 436 (515)
.....+++.++.|.. .-+.+.....+.++.-.+
T Consensus 347 ~~IvLIll~l~~~~~~~~~~~y~~~v~~t~i~s~~~~l 384 (427)
T PF05525_consen 347 VAIVLILLNLFDKFIKNKKIVYRGTVLVTFIFSLLDAL 384 (427)
T ss_pred HHHHHHHHHHHHHHhCCCCceeeeeehHHHHHHHHHHH
Confidence 444445555554431 233444555555544443
No 44
>PRK11375 allantoin permease; Provisional
Probab=97.18 E-value=0.53 Score=51.56 Aligned_cols=101 Identities=10% Similarity=-0.009 Sum_probs=52.5
Q ss_pred CCCCChHHHHHHHHHhhhhhhhh-ccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCchHHHHHhhCc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYF-TGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKP--MRDAGYITMLDPFQKTYGR 127 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~-ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~--~rr~~~~T~~e~~~~Rfg~ 127 (515)
.|+-+++-.+.--.+..++-.++ ++.. ....|++.....+...+|.++...+...- .-.+.-.+.+-+-|.-||.
T Consensus 24 ~Rt~~~~~~~~~W~g~~~~i~~~~~~g~--~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~ 101 (484)
T PRK11375 24 QRTWKTFNYFTLWMGSVHNVPNYVMVGG--FFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGV 101 (484)
T ss_pred ccCCcHHHHHHHHHHHhccHHHHHHHHH--HHHccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHcc
Confidence 56667666655555555553332 1111 12467666554555556655544333322 2122333556667777887
Q ss_pred cchhHHHHHH-HHHHHHHHHHHHHhhc
Q psy16064 128 RIGGLLFLPA-LLGDMLYLSSVLSSLG 153 (515)
Q Consensus 128 ~~~~l~ai~~-ii~~~~~la~~l~a~g 153 (515)
+-..+.++.- ++..+.|.+.|..-.|
T Consensus 102 ~Gs~l~~~~rai~~~igW~~vqt~~~g 128 (484)
T PRK11375 102 RGALFPGLLRGGIAAIMWFGLQCYAGS 128 (484)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6433444333 4456677787766555
No 45
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.18 E-value=0.5 Score=51.12 Aligned_cols=102 Identities=10% Similarity=-0.023 Sum_probs=63.1
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHhhCccc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAG-YITMLDPFQKTYGRRI 129 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~-~~T~~e~~~~Rfg~~~ 129 (515)
.|+++.+-...-..++.+++.-|++........|.+..+..+-..+...+.+.-+++.-.+.+ .-...+|.++.+|+..
T Consensus 8 ~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~~~ 87 (457)
T PRK10580 8 KRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLA 87 (457)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcHH
Confidence 588999988877788888887777766555555655433222233444455566777666654 4567888899999876
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q psy16064 130 GGLLFLPALLGDMLYLSSVLSSL 152 (515)
Q Consensus 130 ~~l~ai~~ii~~~~~la~~l~a~ 152 (515)
..+.+....+........+..+.
T Consensus 88 gf~~gw~~~~~~~~~~~~~~~~~ 110 (457)
T PRK10580 88 GYITGWTYCFEILIVAIADVTAF 110 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544443333333333333
No 46
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.17 E-value=0.48 Score=50.90 Aligned_cols=142 Identities=14% Similarity=0.083 Sum_probs=86.0
Q ss_pred CCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHH-HHHHHHHHHHHHH--HHHHHHHHHHhcCCCC-----chHHHHH
Q psy16064 52 RSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLW-CQAPVGYSLTLVA--GALIFAKPMRDAGYIT-----MLDPFQK 123 (515)
Q Consensus 52 R~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~-~~~~~g~~~~~~l--~~~~~a~~~rr~~~~T-----~~e~~~~ 123 (515)
++++++....+..++.++...+.|.+-.....|..+ +|..+...+|+.. .-..++-++|+++..+ +..++++
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~ 124 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKK 124 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHH
Confidence 459999999999999999999999998866666544 2322333344332 2235667778654443 3477888
Q ss_pred hhCccc-hhHHHHHHHHHHHH-HHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhh
Q psy16064 124 TYGRRI-GGLLFLPALLGDML-YLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVI 201 (515)
Q Consensus 124 Rfg~~~-~~l~ai~~ii~~~~-~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~ 201 (515)
..++|. ..+.++. ++..+. -...|..... ..++..
T Consensus 125 gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~------------------------------------------~~~~~~ 161 (425)
T TIGR00835 125 GLGMRWLAVLFAVF-LIASFGIGNMVQANAIA------------------------------------------SALSNA 161 (425)
T ss_pred HhCccHHHHHHHHH-HHHHHhhhHHHHHHHHH------------------------------------------HHHHHH
Confidence 877653 2333333 221111 1233443333 445545
Q ss_pred hCCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHH
Q psy16064 202 LGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQL 237 (515)
Q Consensus 202 ~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~ 237 (515)
+++|++...+ ...+...|++.||.|.+.-.-..-.
T Consensus 162 ~~~~~~v~~i-~l~~l~~~vi~GGik~Ia~v~~~lv 196 (425)
T TIGR00835 162 FNVPKLVTGI-VLTVLTALIIFGGLKRIAKISSVVV 196 (425)
T ss_pred cCCcHHHHHH-HHHHHHHHHHhcCchHHHHHHHHHH
Confidence 6888776655 4466777889999999875544333
No 47
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.08 E-value=0.55 Score=49.87 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=28.0
Q ss_pred CCchHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHhhc
Q psy16064 115 ITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLG 153 (515)
Q Consensus 115 ~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~~la~~l~a~g 153 (515)
.+.+-.-|..||.+...+.++...+..+.|.+.|..-.|
T Consensus 58 l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg 96 (386)
T TIGR02358 58 LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGA 96 (386)
T ss_pred cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677788776566677777778888888876655
No 48
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.08 E-value=0.36 Score=52.79 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=33.4
Q ss_pred CCccchHHHHHHHh-CchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHH
Q psy16064 302 TESNSVLPLVLRYL-TPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRN 350 (515)
Q Consensus 302 ~~~d~~~p~~~~~~-lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~D 350 (515)
.+++.++..+.+++ ++..+..+++..++--..+|+||...+.++.-+++
T Consensus 375 ~g~~~a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~ 424 (485)
T PF02028_consen 375 QGPEAALFAFLEQLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKG 424 (485)
T ss_dssp H-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC
Confidence 35666666777665 22344455555566677789999999999998876
No 49
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=97.07 E-value=0.62 Score=50.22 Aligned_cols=78 Identities=13% Similarity=-0.035 Sum_probs=41.9
Q ss_pred HHHHHhhhhhhhhccccHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHh--cCCCCchHHHHHhhCccchhHHHHHH
Q psy16064 61 LTLIATWGGGSYFTGTAESLFSTGLLWCQ-APVGYSLTLVAGALIFAKPMRD--AGYITMLDPFQKTYGRRIGGLLFLPA 137 (515)
Q Consensus 61 ~s~~at~~s~~~~ig~~g~~y~~G~~~~~-~~~g~~~~~~l~~~~~a~~~rr--~~~~T~~e~~~~Rfg~~~~~l~ai~~ 137 (515)
+++.+|.+|+.. +..|=.+...|+-... ..+.....+...+..+.+..-+ .+..+..|..++.+|++.+.+..+.-
T Consensus 26 l~l~GTAIGAGm-LfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilY 104 (443)
T PRK13629 26 LGLFGTAIGAGV-LFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLY 104 (443)
T ss_pred HHHHHHHHhHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHH
Confidence 567788887654 4555455554443221 1111111222222333333222 35678999999999999876655444
Q ss_pred HH
Q psy16064 138 LL 139 (515)
Q Consensus 138 ii 139 (515)
.+
T Consensus 105 ff 106 (443)
T PRK13629 105 FF 106 (443)
T ss_pred HH
Confidence 33
No 50
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.00 E-value=0.72 Score=49.81 Aligned_cols=101 Identities=12% Similarity=0.026 Sum_probs=52.5
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCCchHHHHHhhCc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGAL---IFAKPMRDAGYITMLDPFQKTYGR 127 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~---~~a~~~rr~~~~T~~e~~~~Rfg~ 127 (515)
.|+-+++-.+.--++..++-.++.-- +.....|++..+..+...+|.++... +.+..=.|.+. +.+.+-|..||.
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~G-a~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl-~~~v~sR~~FG~ 88 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIG-ALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL-PFPVLSRASFGI 88 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC-Ccchhhhhhhhh
Confidence 56556666555555555542222211 12223455544433333344433322 22222344444 556677777887
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhc
Q psy16064 128 RIGGLLFLPALLGDMLYLSSVLSSLG 153 (515)
Q Consensus 128 ~~~~l~ai~~ii~~~~~la~~l~a~g 153 (515)
+...+.++...+..+.|.+.|..-.|
T Consensus 89 ~Gs~~~~~~~~i~~igW~av~~~~~g 114 (442)
T TIGR00800 89 YGSLLPSLLRIVMAIGWYGVQAWVGG 114 (442)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 75556666666777788888866554
No 51
>PRK10483 tryptophan permease; Provisional
Probab=96.99 E-value=0.69 Score=49.57 Aligned_cols=172 Identities=9% Similarity=0.006 Sum_probs=95.4
Q ss_pred HHHHHHhhhhhhhhccccHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHhhCccchhHHHHHH
Q psy16064 60 VLTLIATWGGGSYFTGTAESLFSTGLLWCQ-APVGYSLTLVAGALIFAKPMRD-AGYITMLDPFQKTYGRRIGGLLFLPA 137 (515)
Q Consensus 60 ~~s~~at~~s~~~~ig~~g~~y~~G~~~~~-~~~g~~~~~~l~~~~~a~~~rr-~~~~T~~e~~~~Rfg~~~~~l~ai~~ 137 (515)
.+-+.+|.+|+. .++.|-.....|+.+.. ..+..-..+..-++++.+---+ .+-.+...+-++-.|++.+.+..+..
T Consensus 17 ~~iIaGT~IGaG-MLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g~~i~~~s~ 95 (414)
T PRK10483 17 VVIIGGTIIGAG-MFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISI 95 (414)
T ss_pred HHHHHHchHhHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHH
Confidence 334455666543 46777666666664322 2222223444455566665433 34456666667777776665543332
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhh-----CCchHHHHHH
Q psy16064 138 LLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVIL-----GISDYLSVTI 212 (515)
Q Consensus 138 ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~-----gi~~~~~i~i 212 (515)
++.....+.+-+.+.| .+++..+ ++|.+.+.++
T Consensus 96 lfl~Y~Ll~AYisg~g------------------------------------------~il~~~l~~~~~~i~~~~~~ll 133 (414)
T PRK10483 96 AFVLYILTYAYISASG------------------------------------------SILHHTFAEMSLNVPARAAGFG 133 (414)
T ss_pred HHHHHHHHHHHHhCcH------------------------------------------HHHHHHHHhcCCCCcHHHHHHH
Confidence 2222222333333443 3444433 5688888887
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHHH-----------------------------------------------H
Q psy16064 213 STMFAVAYTISGGLYSVSYTDVLQLIFIVFGL-----------------------------------------------S 245 (515)
Q Consensus 213 ~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~-----------------------------------------------~ 245 (515)
..++....+.. |.|+|-+.+.+-...|++.. .
T Consensus 134 F~~~~~~iv~~-gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIP 212 (414)
T PRK10483 134 FALLVAFVVWL-STKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVP 212 (414)
T ss_pred HHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcch
Confidence 77777765555 56877776665555443322 1
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q psy16064 246 YFQRILSLKSSTDAVNVSLISATACFFIVIP 276 (515)
Q Consensus 246 ~~qr~~aak~~~~ar~~~~~~~~~~~~~~~~ 276 (515)
-..|++ .+|.|+.||+...+...-.++++.
T Consensus 213 sl~~y~-~~d~~kir~~I~iGs~Iplv~yl~ 242 (414)
T PRK10483 213 SLMKYY-GKDPKTIVKCLVYGTLMALALYTI 242 (414)
T ss_pred HHHHHh-CcCHHHHHHHHHHHHHHHHHHHHH
Confidence 123454 467789999999887766555544
No 52
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=96.97 E-value=0.73 Score=49.37 Aligned_cols=140 Identities=17% Similarity=0.112 Sum_probs=91.0
Q ss_pred HhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHH-HHHHHHHH--HHHHHHHHHHhcC----CCC-chHH
Q psy16064 49 LAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPV-GYSLTLVA--GALIFAKPMRDAG----YIT-MLDP 120 (515)
Q Consensus 49 laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~-g~~~~~~l--~~~~~a~~~rr~~----~~T-~~e~ 120 (515)
-.++.++++-..++..|+..++..+.|.+-.....|.....|+| ...+|+.- .=-.++.++|+++ ++- +.-|
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 34567899999899999999999999999888888865543333 22233321 2234667777654 222 4567
Q ss_pred HHHhhCccc-hhHHHHHHHHHHHH--HHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhh
Q psy16064 121 FQKTYGRRI-GGLLFLPALLGDML--YLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVS 197 (515)
Q Consensus 121 ~~~Rfg~~~-~~l~ai~~ii~~~~--~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i 197 (515)
+++..|.|. ..+.+ ..++..+. .-..|-.+++ ..
T Consensus 138 i~kGl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa------------------------------------------~a 174 (452)
T COG1115 138 IEKGLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIA------------------------------------------SA 174 (452)
T ss_pred HHhhcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHH------------------------------------------HH
Confidence 788888774 33334 22222222 3445555544 56
Q ss_pred hHhhhCCchHHHHHHHHHHHHHHhhccChhHHHHH
Q psy16064 198 LKVILGISDYLSVTISTMFAVAYTISGGLYSVSYT 232 (515)
Q Consensus 198 ~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~t 232 (515)
++.-+|+|++..-+ ...+.+.++++||.|.+...
T Consensus 175 ~~~af~~~~~~~gi-~la~l~~~VI~GGi~rIa~v 208 (452)
T COG1115 175 LANAFGIPPLVTGI-VLALLVALVIFGGIKRIAKV 208 (452)
T ss_pred HHHhcCCcHHHHHH-HHHHHHHHHHHcchHHHHHH
Confidence 78889999776555 55666789999999997643
No 53
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=96.94 E-value=0.47 Score=48.88 Aligned_cols=107 Identities=7% Similarity=0.100 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhh
Q psy16064 83 TGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLF 162 (515)
Q Consensus 83 ~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~ 162 (515)
+|..+.+...-..+-+.+.+....+.=|+.+..+-.|.++.-+|.....+.-+..++.. .-++..+.|.+
T Consensus 34 ~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~l-f~~~vVM~AGa--------- 103 (349)
T COG3949 34 YGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIIDIIIIFFL-FSTAVVMLAGA--------- 103 (349)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHhccc---------
Confidence 45444433333334444455566666788899999999998888876444433332222 22334444433
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCchHHHHHHHHHHHHHHhhccChhHHHH
Q psy16064 163 LPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSY 231 (515)
Q Consensus 163 lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~~~~~i~i~~~iv~~Yt~~GGl~av~~ 231 (515)
|..+++-+|+|+|.+.++....+.+--..++.++..-
T Consensus 104 --------------------------------gs~~~e~~~lP~wiGali~i~~v~i~lfl~~vegi~t 140 (349)
T COG3949 104 --------------------------------GSLLEEMFGLPYWIGALIIILLVLILLFLGRVEGIIT 140 (349)
T ss_pred --------------------------------hhHHHHHhCccHHHHHHHHHHHHHHHHHHhcccceee
Confidence 3689999999999998777777777777776555543
No 54
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=96.92 E-value=0.81 Score=49.18 Aligned_cols=82 Identities=11% Similarity=-0.048 Sum_probs=52.8
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHhhCccc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGY-ITMLDPFQKTYGRRI 129 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~~-~T~~e~~~~Rfg~~~ 129 (515)
.|+++.+-......++.+|+..|.- |+.....|-...+..+...++.++.++.+++.-.+.+. -...+|.++ +|+..
T Consensus 4 ~~~lg~~~~~~l~vg~~IGsGif~l-p~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~ 81 (435)
T PRK10435 4 AKKIGLFACTGVVAGNMMGSGIALL-PANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAF 81 (435)
T ss_pred CCcCCHHHHHHHHHhhHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHH
Confidence 6789999888888888888887754 44455566554442233345556677777777666533 356777776 88765
Q ss_pred hhHHH
Q psy16064 130 GGLLF 134 (515)
Q Consensus 130 ~~l~a 134 (515)
....+
T Consensus 82 gf~~g 86 (435)
T PRK10435 82 GFQTG 86 (435)
T ss_pred HHHHH
Confidence 44443
No 55
>PRK11387 S-methylmethionine transporter; Provisional
Probab=96.86 E-value=0.96 Score=49.15 Aligned_cols=95 Identities=14% Similarity=-0.072 Sum_probs=56.1
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhCcc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQ-APVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYGRR 128 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~-~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg~~ 128 (515)
.|+++.+-..+-..++.+++.-|++........|-.+.. ..+...+...+.+.-+++.-++. ..=...+|.++.||+.
T Consensus 13 ~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~~ 92 (471)
T PRK11387 13 KRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGPA 92 (471)
T ss_pred hhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcChH
Confidence 588999998888888888888777665544444533322 11112233333445555555543 2235788899999987
Q ss_pred chhHHHHHHHHHHHHHH
Q psy16064 129 IGGLLFLPALLGDMLYL 145 (515)
Q Consensus 129 ~~~l~ai~~ii~~~~~l 145 (515)
..-..+....+......
T Consensus 93 ~gf~~gw~~~~~~~~~~ 109 (471)
T PRK11387 93 TGYTVAWLYWLTWTVAL 109 (471)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 65555554444433333
No 56
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=96.85 E-value=0.98 Score=49.09 Aligned_cols=92 Identities=13% Similarity=0.000 Sum_probs=56.8
Q ss_pred hCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHhhCcc
Q psy16064 50 AGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRD-AGYITMLDPFQKTYGRR 128 (515)
Q Consensus 50 aGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr-~~~~T~~e~~~~Rfg~~ 128 (515)
-.|+++.+-..+-..++.+|+.-|++........|....+......+...+.+.-+++.--. ....+..+|-++.||+.
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~~ 97 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPW 97 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCcH
Confidence 57889998887777888999888887776666666643331111122233334445544322 23335678999999987
Q ss_pred chhHHHHHHHHHH
Q psy16064 129 IGGLLFLPALLGD 141 (515)
Q Consensus 129 ~~~l~ai~~ii~~ 141 (515)
...+.+....+..
T Consensus 98 ~gf~~gW~~~~~~ 110 (469)
T PRK11049 98 AGYFTGWTYWFCW 110 (469)
T ss_pred HHHHHHHHHHHHH
Confidence 6656655544433
No 57
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=96.77 E-value=1.1 Score=48.27 Aligned_cols=102 Identities=10% Similarity=-0.092 Sum_probs=53.4
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhCcc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWC-QAPVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYGRR 128 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~-~~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg~~ 128 (515)
.|+++.+-.....+++.++ ..+.+.+......|..+. +..+-..+.....+.-+++.-.+. +.-..++|.++.||+.
T Consensus 6 ~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~ 84 (442)
T TIGR00908 6 KKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPW 84 (442)
T ss_pred hccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcH
Confidence 5778888766665555554 333443332233344332 211112223334445566665554 3346788999999987
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhc
Q psy16064 129 IGGLLFLPALLGDMLYLSSVLSSLG 153 (515)
Q Consensus 129 ~~~l~ai~~ii~~~~~la~~l~a~g 153 (515)
...+.+....+......+....+.+
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~a~~~~ 109 (442)
T TIGR00908 85 GGFLAGTAILIEFAFAPPAIACFIG 109 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555554444333333333333
No 58
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=96.65 E-value=1.6 Score=48.75 Aligned_cols=96 Identities=13% Similarity=-0.077 Sum_probs=59.3
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHhhCcc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFS-TGLLWCQAPVGYSLTLVAGALIFAKPMRDAGY-ITMLDPFQKTYGRR 128 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~-~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~~~-~T~~e~~~~Rfg~~ 128 (515)
.|+++.+-....-+++.+|+..|+.....+.. .|.+..+..+-.++...+.++-+++.-.+.+. =+.+.|.++.+|+.
T Consensus 27 ~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G~~ 106 (557)
T TIGR00906 27 KRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGEL 106 (557)
T ss_pred hhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhCcH
Confidence 68899998877777777887777655444433 46544332222334444566677777666533 36778888889987
Q ss_pred chhHHHHHHHHHHHHHHH
Q psy16064 129 IGGLLFLPALLGDMLYLS 146 (515)
Q Consensus 129 ~~~l~ai~~ii~~~~~la 146 (515)
...+.+...++......+
T Consensus 107 ~gfi~GW~~~l~~~~~~a 124 (557)
T TIGR00906 107 WAFITGWNLILEYVIGTA 124 (557)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666555444443333
No 59
>PRK10746 putative transport protein YifK; Provisional
Probab=96.65 E-value=1.4 Score=47.93 Aligned_cols=103 Identities=15% Similarity=-0.065 Sum_probs=63.7
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhCccc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYGRRI 129 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg~~~ 129 (515)
.|+++.+-..+-..++.+++.-|+|.....-..|.+..+...-..+...+.+.-+++.-.+. ..-+..+|-++.+|+..
T Consensus 9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~~ 88 (461)
T PRK10746 9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFF 88 (461)
T ss_pred hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHH
Confidence 48899999888888888999989988776666675433211111223233444556655554 33467888888888776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc
Q psy16064 130 GGLLFLPALLGDMLYLSSVLSSLG 153 (515)
Q Consensus 130 ~~l~ai~~ii~~~~~la~~l~a~g 153 (515)
.-..+....+......+.+..+.+
T Consensus 89 Gf~~gw~~~~~~~~~~~~~~~a~~ 112 (461)
T PRK10746 89 GYLTAWSYWFMWMAVGISEITAIG 112 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555554444444555655555
No 60
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=96.63 E-value=0.5 Score=50.69 Aligned_cols=323 Identities=14% Similarity=0.082 Sum_probs=163.2
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCchHHHHHhhCccc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPM-RDAGYITMLDPFQKTYGRRI 129 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~-rr~~~~T~~e~~~~Rfg~~~ 129 (515)
.|++....+-+-..+..+|+.-|+|.....-..|.+.+....-..+...+.+.-+++.. ++-+..|..||-+|-+|+..
T Consensus 12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~A 91 (462)
T COG1113 12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWA 91 (462)
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchH
Confidence 46777777666667788899999999999999998875422222222223333444443 44678899999999999886
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhH-hhhC-CchH
Q psy16064 130 GGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLK-VILG-ISDY 207 (515)
Q Consensus 130 ~~l~ai~~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~-~~~g-i~~~ 207 (515)
.-+....-....+.-..+|+.|.+.+++.-.--.|.-.+....+.- ...+ .+.+ ..+| .++|
T Consensus 92 gf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l-~~~~---------------NL~sVk~FGE~EfW 155 (462)
T COG1113 92 GFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVFALAAVVL-LLAV---------------NLISVKVFGELEFW 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHHH---------------HHHHHHHHHHHHHH
Confidence 5555554444444555678888885433221112221111111110 0000 1112 1333 4444
Q ss_pred HHH-----HHHHHHHHHHhhccChhHHH------------------HHHHHHHHHHHH----HHHHH-HHHhcCCChHHH
Q psy16064 208 LSV-----TISTMFAVAYTISGGLYSVS------------------YTDVLQLIFIVF----GLSYF-QRILSLKSSTDA 259 (515)
Q Consensus 208 ~~i-----~i~~~iv~~Yt~~GGl~av~------------------~tD~iQ~iim~i----g~~~~-qr~~aak~~~~a 259 (515)
.++ ++..+++.+|-.+||..+-- +..++-+..+.+ |+-+. .-.-.+||+++.
T Consensus 156 fAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ 235 (462)
T COG1113 156 FALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKA 235 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhH
Confidence 433 34444455666665444332 222222222221 11111 123346777644
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHHHHHHHHHHHHhHhH
Q psy16064 260 -VNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADS 338 (515)
Q Consensus 260 -r~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~l~~llAA~mST~~s 338 (515)
+|+.---..=..++++... ..+...+-|+.. .+.+.-+-+..+..--|+..+++=..++-|.+|+.+|
T Consensus 236 ipkAin~V~~RI~iFYvgsl--~vi~~l~PW~~~---------~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NS 304 (462)
T COG1113 236 IPKAINSVIWRILIFYVGSL--FVILSLYPWNQI---------GEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNS 304 (462)
T ss_pred HHHHHhhhhHHHHHHHHHHH--HHHheecccccc---------CCCCCcHHHHHHHcCCcccccceeEEEeechhhcccc
Confidence 3544433333333333322 222222223221 1233345555555544555666555667788999999
Q ss_pred HHHhhhhhHHHHhhhhccCC----CCChHHHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHhh
Q psy16064 339 VILGSGSMFTRNIYHQSFRP----KASEYELMWVLRLSILAASVISCSIALSGA-SIYYLSVVCSDVV 401 (515)
Q Consensus 339 ~l~~~ss~~~~Di~~~~~~~----~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~~-~i~~l~~~~~~~~ 401 (515)
-+-+.+-++- .+-++--.| +.+.++.-.-+-+.+.+..++++++.+..| +++.++..+.+..
T Consensus 305 glystsRmL~-~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~ 371 (462)
T COG1113 305 GLYSTSRMLY-SLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLG 371 (462)
T ss_pred cccccchHHH-HHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 8888776652 221110111 112222223334455666677777777655 5777666554433
No 61
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=96.58 E-value=1.6 Score=47.85 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=47.9
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhh-hhHHH--H-HHHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHhh
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFST-GLLWC--Q-APVGYSLTLVAGALIFAKPMRDAGY-ITMLDPFQKTY 125 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~-G~~~~--~-~~~g~~~~~~l~~~~~a~~~rr~~~-~T~~e~~~~Rf 125 (515)
.|+++.+-.....+++.+++..| ..++.+.+. |-.+. + +.++ .+.....++.+++.-.+.+. =..++|.++.|
T Consensus 41 ~r~l~~~~~~~l~vg~iiGsGif-~~~~~~~~~~G~~g~~~~~~ii~-~i~~~~~al~~aELas~~P~sGG~y~~~~~~~ 118 (501)
T TIGR00911 41 KKEITLLSGVGIIVGTIIGSGIF-VSPKGVLKNAGSVGLALIMWAVC-GIFSIVGALVYAELGTTIPKSGGEYNYILEVF 118 (501)
T ss_pred CccccHhHhhHhheeceEEeeEe-ecHHHHHhhCCChHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCchhhhHHhHh
Confidence 67788887666666666665433 344444443 43221 1 1222 23344455667776666543 36889999999
Q ss_pred CccchhHHHHH
Q psy16064 126 GRRIGGLLFLP 136 (515)
Q Consensus 126 g~~~~~l~ai~ 136 (515)
|+....+.+..
T Consensus 119 g~~~gf~~gw~ 129 (501)
T TIGR00911 119 GPLLAFLRLWI 129 (501)
T ss_pred CCHHHHHHHHH
Confidence 98765554443
No 62
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=96.27 E-value=2.2 Score=46.05 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=97.5
Q ss_pred HHhcCCChHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHH
Q psy16064 249 RILSLKSSTDAVNVSLISA----TACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFG 324 (515)
Q Consensus 249 r~~aak~~~~ar~~~~~~~----~~~~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~ 324 (515)
|-..-||+|+.+|....++ ....+++..+..+|.......+ +..|..++.-..+.+.++++...++
T Consensus 214 ~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~----------~~~~g~~il~~~~~~~~G~~G~~ll 283 (439)
T PRK15433 214 RSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVD----------QSANGAAILHAYVQHTFGGGGSFLL 283 (439)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc----------CCCcHhHHHHHHHHHHhCHHHHHHH
Confidence 4455667777666555544 4445556655555543322110 1235666666788899999988888
Q ss_pred HHHHHHHHHHhHhHHHHhhhhhHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHhhhh
Q psy16064 325 LGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSG-ASIYYLSVVCSDVVYV 403 (515)
Q Consensus 325 l~~llAA~mST~~s~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~-~~i~~l~~~~~~~~~~ 403 (515)
...++-|++.|+-+...+++.-+.+.. + .+. |....+..+++..++... +++.....=.....+-
T Consensus 284 ~iiv~lACLTTaIGLi~a~a~~f~~~~-~------isY-------~~~v~i~~l~S~~lSn~G~~~II~~s~PiL~~iYP 349 (439)
T PRK15433 284 AALIFIACLVTAVGLTCACAEFFAQYV-P------LSY-------RTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYP 349 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-C------CcH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhH
Confidence 889999999999999888877764432 1 111 445566777888888653 5566554433333444
Q ss_pred hhHHHHHHHhhcCC-----CCChHHHHHHHHHHHHHH
Q psy16064 404 TLFPQLVLVVHGAN-----HVNSYGCLSSVVIGILLR 435 (515)
Q Consensus 404 ~l~~~ll~gl~wkr-----~~t~~ga~~s~i~G~~~~ 435 (515)
.....+++.++.|+ +.-+.+.....+.++.-.
T Consensus 350 ~~IvLill~l~~~~~~~~~~~y~~~~~~t~i~s~~~~ 386 (439)
T PRK15433 350 PCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDG 386 (439)
T ss_pred HHHHHHHHHHHHHHhCCCCceehHHHHHHHHHHHHHH
Confidence 44444556665443 133344444555555443
No 63
>PRK09950 putative transporter; Provisional
Probab=96.10 E-value=2.9 Score=45.98 Aligned_cols=48 Identities=21% Similarity=0.146 Sum_probs=31.3
Q ss_pred CccchHHHHHHHh-CchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHH
Q psy16064 303 ESNSVLPLVLRYL-TPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRN 350 (515)
Q Consensus 303 ~~d~~~p~~~~~~-lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~D 350 (515)
+++.++..+.+++ ++..+..+.+..++--...|+||...+.++.-++.
T Consensus 386 ~~~~a~~~~l~~lP~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g 434 (506)
T PRK09950 386 GGETAVQQLLSSLPAGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRN 434 (506)
T ss_pred CcchHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCC
Confidence 4566666666665 22344455555556667788999988888887653
No 64
>PRK09664 tryptophan permease TnaB; Provisional
Probab=96.09 E-value=2.6 Score=45.24 Aligned_cols=140 Identities=11% Similarity=0.079 Sum_probs=74.3
Q ss_pred HHHHHHHhhhhhhhhccccHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhCccchhHHHHH
Q psy16064 59 GVLTLIATWGGGSYFTGTAESLFSTGLLWCQ-APVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYGRRIGGLLFLP 136 (515)
Q Consensus 59 ~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~-~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg~~~~~l~ai~ 136 (515)
..+-+.+|.+|+. .++.|-.....|+.+.. ..+..-..+..-++++.+--.+. +-.+...+-++-.|++.+.+..+.
T Consensus 14 g~~iIaGT~IGAG-MLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i~~~~ 92 (415)
T PRK09664 14 GVMVIAGTVIGGG-MFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGIT 92 (415)
T ss_pred hhHHhhhccHhHH-HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHH
Confidence 3444456666543 46777666666664322 22233344444556666665443 555667777777777766665554
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhh------CCchHHHH
Q psy16064 137 ALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVIL------GISDYLSV 210 (515)
Q Consensus 137 ~ii~~~~~la~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~------gi~~~~~i 210 (515)
..+.....+.+-+.+.| .+++..+ ++|+..+.
T Consensus 93 ~~fl~Y~Ll~AYisggG------------------------------------------~il~~~l~~~~~~~i~~~~~~ 130 (415)
T PRK09664 93 VAFVLYILTYAYISANG------------------------------------------AIISETISMNLGYHANPRIVG 130 (415)
T ss_pred HHHHHHHHHHHHHhccH------------------------------------------HHHHHHHhhhccCCCcHHHHH
Confidence 33333233334444444 3333332 45666666
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHHHH
Q psy16064 211 TISTMFAVAYTISGGLYSVSYTDVLQLIFIVF 242 (515)
Q Consensus 211 ~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~i 242 (515)
++..++....+..| .|.|-+-+.+-...|++
T Consensus 131 llF~~~~~~~v~~g-t~~vd~~nr~l~~~~ii 161 (415)
T PRK09664 131 ICTAIFVASVLWIS-SLAASRITSLFLGLKII 161 (415)
T ss_pred HHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHH
Confidence 66666555555544 47766666555544443
No 65
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=95.99 E-value=1.2 Score=47.70 Aligned_cols=99 Identities=17% Similarity=0.100 Sum_probs=46.2
Q ss_pred CCCCChHHHHHHHHHhhhhhhhh-ccccHHHhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhh
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYF-TGTAESLFSTGLLWCQA----PVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTY 125 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~-ig~~g~~y~~G~~~~~~----~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rf 125 (515)
.|+-+++-.+.--.+..++-.++ +|..+ ...|++.... .+|..++.++.+ +.+..=.|++. +.+..-|.-|
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~--~~~gL~~~~ailai~~G~~l~~i~~~-~~~~~G~r~Gl-~~~v~sR~~F 81 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALG--VALGLSFWQAILAILIGNLLGAILVA-LMGIIGPRTGL-PTMVLSRASF 81 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHH--HCCCS-HHHHHHHHHHHHHHHHHHHH-HHTHHHHCC----HHHHTTTTS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHH--HccCchHHHHHHHHHHHHHHHHHHHH-HhcccccccCC-Cchhcchhcc
Confidence 45556665555555555554433 33333 3345443332 234444444333 33343355554 3344445557
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHhhc
Q psy16064 126 GRRIGGLLFLPALLGDMLYLSSVLSSLG 153 (515)
Q Consensus 126 g~~~~~l~ai~~ii~~~~~la~~l~a~g 153 (515)
|.+...+.++...+..+.|.+.|..-.|
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g 109 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGG 109 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665566666666677788887765554
No 66
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=95.98 E-value=2.7 Score=44.56 Aligned_cols=67 Identities=15% Similarity=0.008 Sum_probs=37.4
Q ss_pred HHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHh-cCCCCchHHHHHhhCccchhHHHHHHHHHHHHHH
Q psy16064 79 SLFSTGLLWC-QAPVGYSLTLVAGALIFAKPMRD-AGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYL 145 (515)
Q Consensus 79 ~~y~~G~~~~-~~~~g~~~~~~l~~~~~a~~~rr-~~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~~l 145 (515)
.....|.... ++.++..+..+..++.+++.-++ .+.-..++|.++-+|++.+.+.+....+...+..
T Consensus 24 ~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~ 92 (426)
T PF13520_consen 24 AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFIVGWLYWVAYILSL 92 (426)
T ss_dssp HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhcccceeEEEeeccc
Confidence 3334555433 33344333334556666665543 4666788899999988776666555554444433
No 67
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=95.91 E-value=3.3 Score=44.94 Aligned_cols=101 Identities=9% Similarity=-0.074 Sum_probs=59.9
Q ss_pred CCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC-C-CchHHHHHhhCcc
Q psy16064 52 RSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLW-CQAPVGYSLTLVAGALIFAKPMRDAGY-I-TMLDPFQKTYGRR 128 (515)
Q Consensus 52 R~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~-~~~~~g~~~~~~l~~~~~a~~~rr~~~-~-T~~e~~~~Rfg~~ 128 (515)
|+++.+-...-..++.+++.-|.+........|-.+ .+..+...+...+.+.-+++.-++.+. - ...+|.++.+|+.
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~ 81 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPA 81 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcH
Confidence 678888877777778888777777665555556433 332222233444555666777666652 2 3567888889887
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Q psy16064 129 IGGLLFLPALLGDMLYLSSVLSSL 152 (515)
Q Consensus 129 ~~~l~ai~~ii~~~~~la~~l~a~ 152 (515)
...+.+....+..+...+.+..+.
T Consensus 82 ~gf~~gw~~~~~~~~~~~~~~~~~ 105 (478)
T TIGR00913 82 FGFAVGWNYWLQWLIVLPLELVTA 105 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555554444444444444433
No 68
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=95.77 E-value=4 Score=44.81 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=52.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhC-chhHHHHH
Q psy16064 246 YFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLT-PGWVTFFG 324 (515)
Q Consensus 246 ~~qr~~aak~~~~ar~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~l-p~~l~gl~ 324 (515)
+.-|+-.-|+.||---+.+..+....... ..+.|-.+.....+...+.+......+++.++..+.+++. +.....+.
T Consensus 334 FIARISrGRTIREfi~gvl~~P~~~~~~w--ftVfG~~ai~~~~~~~~~~~~~~~~~~~e~alf~~l~~lPl~~v~~~~~ 411 (537)
T COG1292 334 FIARISRGRTIREFIVGVLLIPTLFTWLW--FTVFGNYALYLIINGGGGILGLVTTEGPETALFQVLSHLPLGTLTSLLA 411 (537)
T ss_pred HHHHHhCCccHHHHHHHHHHHhHHHHHHH--HHHHhhhHHHHHhccccchhhhhhccchhhHHHHHHHhCCHHHHHHHHH
Confidence 34466556666666555554443322211 1223433333321111111111223467888877777653 22333343
Q ss_pred HHHHHHHHHHhHhHHHHhhhhhHHHH
Q psy16064 325 LGAVSASVMSSADSVILGSGSMFTRN 350 (515)
Q Consensus 325 l~~llAA~mST~~s~l~~~ss~~~~D 350 (515)
+..+..-..+++||.-...++.-++|
T Consensus 412 ~~~i~~FfiTsaDS~s~vl~~~ss~~ 437 (537)
T COG1292 412 LLVIAIFFVTSADSGSYVLAMISSRG 437 (537)
T ss_pred HHHHHHHHhhccchHHHHHHHHhccC
Confidence 44455566788999888888777776
No 69
>PRK09928 choline transport protein BetT; Provisional
Probab=95.63 E-value=5.4 Score=45.32 Aligned_cols=48 Identities=15% Similarity=-0.024 Sum_probs=31.1
Q ss_pred CccchHHHHHHHhC-chhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHH
Q psy16064 303 ESNSVLPLVLRYLT-PGWVTFFGLGAVSASVMSSADSVILGSGSMFTRN 350 (515)
Q Consensus 303 ~~d~~~p~~~~~~l-p~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~D 350 (515)
+++.++..+.+++. +..+..+.+..++--...|+||...+.++.-++.
T Consensus 393 ~~~~alf~~l~~lP~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g 441 (679)
T PRK09928 393 HPERGFYSLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTSKL 441 (679)
T ss_pred chhhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCC
Confidence 56777777777662 2334444444455566778999888888877654
No 70
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=95.34 E-value=5 Score=43.12 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=46.2
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHh-hhhhHH-HHH-HHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhC
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLF-STGLLW-CQA-PVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYG 126 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y-~~G~~~-~~~-~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg 126 (515)
.|+++.+-...-.+++.+++..|. .++... ..|-.+ .+. .+...+..++.++-+++.-++. +.=..+.|.++.||
T Consensus 7 ~r~l~~~~~~~l~vg~~ig~Gif~-~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~g 85 (445)
T PRK11357 7 QRKLGFWAVLAIAVGTTVGSGIFV-SVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGS 85 (445)
T ss_pred cccccHHHHHHHHHHhheechhcc-chHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhcC
Confidence 688988887666666666655444 455443 334321 111 1122233444556666655443 23466678888898
Q ss_pred ccchhHHHH
Q psy16064 127 RRIGGLLFL 135 (515)
Q Consensus 127 ~~~~~l~ai 135 (515)
+....+.+.
T Consensus 86 ~~~gf~~gw 94 (445)
T PRK11357 86 RPLAFLSGW 94 (445)
T ss_pred ChhHHHHHH
Confidence 875544444
No 71
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=95.24 E-value=5.4 Score=42.87 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=54.8
Q ss_pred HHHHHHhhhhhhhhccccHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC--CchHHHHHhhCccchhHHHHH
Q psy16064 60 VLTLIATWGGGSYFTGTAESLFSTGLLWCQ-APVGYSLTLVAGALIFAKPMRDAGYI--TMLDPFQKTYGRRIGGLLFLP 136 (515)
Q Consensus 60 ~~s~~at~~s~~~~ig~~g~~y~~G~~~~~-~~~g~~~~~~l~~~~~a~~~rr~~~~--T~~e~~~~Rfg~~~~~l~ai~ 136 (515)
.+.+.+|.+|+. .+..|=..-..|+.... ..+..........+.+.+-..+.+.. +..|..++-+|++.+.+..+.
T Consensus 15 vl~l~gT~IGAG-vL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s 93 (415)
T COG0814 15 VLILAGTAIGAG-VLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLS 93 (415)
T ss_pred HHHHHccccccc-hhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHH
Confidence 445667777644 34556444444543322 12222233444556666766665444 999999999999988877666
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy16064 137 ALLGDMLYLSSVLSSLG 153 (515)
Q Consensus 137 ~ii~~~~~la~~l~a~g 153 (515)
-.+...+...+-..+.|
T Consensus 94 ~~~~~~~~~~aY~~~~g 110 (415)
T COG0814 94 YFFALYGLLVAYIVGIG 110 (415)
T ss_pred HHHHHHHHHHHHHhcch
Confidence 55555555555555555
No 72
>KOG1303|consensus
Probab=94.65 E-value=8 Score=41.89 Aligned_cols=84 Identities=12% Similarity=-0.004 Sum_probs=49.4
Q ss_pred hCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhc------CCCCchHHHH
Q psy16064 50 AGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLW-CQAPVGYSLTLVAGALIFAKPMRDA------GYITMLDPFQ 122 (515)
Q Consensus 50 aGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~-~~~~~g~~~~~~l~~~~~a~~~rr~------~~~T~~e~~~ 122 (515)
..|+.++|...+... +...|..+++.|-..-+.|+.+ ....+...+-..--+.++.+-+|.+ +..+-+|.=+
T Consensus 34 ~~~~~s~~~a~~~~i-~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~ 112 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHII-NALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ 112 (437)
T ss_pred cCCCCcceehhhhee-hhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence 477788888877765 4445566778885556667654 3222222221122334455555542 3355899999
Q ss_pred HhhCccchhHHH
Q psy16064 123 KTYGRRIGGLLF 134 (515)
Q Consensus 123 ~Rfg~~~~~l~a 134 (515)
+-||.+.|.+..
T Consensus 113 ~afG~~~~~iv~ 124 (437)
T KOG1303|consen 113 AAFGPKGRLLVS 124 (437)
T ss_pred HHhCCCceEeee
Confidence 999977654443
No 73
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=94.57 E-value=8.1 Score=41.67 Aligned_cols=86 Identities=17% Similarity=0.011 Sum_probs=48.3
Q ss_pred HhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhCccchhHHHHHHHHHHHH
Q psy16064 65 ATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYGRRIGGLLFLPALLGDML 143 (515)
Q Consensus 65 at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~ 143 (515)
++.+|+.-|++......+.|-...+...-.++...+.++-+++.-.+. ..-...+|.++.||+...-..+....+..+.
T Consensus 5 g~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~ 84 (446)
T PRK10197 5 AGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVL 84 (446)
T ss_pred cchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 455666777775544445565433322222233344556666665554 3347899999999988766666555544444
Q ss_pred HHHHHHH
Q psy16064 144 YLSSVLS 150 (515)
Q Consensus 144 ~la~~l~ 150 (515)
....+..
T Consensus 85 ~~~~~~~ 91 (446)
T PRK10197 85 VIPLEAN 91 (446)
T ss_pred HHHHHHH
Confidence 4444433
No 74
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=94.25 E-value=9.9 Score=41.34 Aligned_cols=46 Identities=22% Similarity=0.092 Sum_probs=30.0
Q ss_pred cchHHHHHHHh-CchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHH
Q psy16064 305 NSVLPLVLRYL-TPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRN 350 (515)
Q Consensus 305 d~~~p~~~~~~-lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~D 350 (515)
+.++..+.+++ ++..+..+.+..++--...|+||...+.++..+++
T Consensus 342 ~~a~~~~l~~lP~~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~ 388 (453)
T TIGR00842 342 ARALFGLLQALPLGTITSALALIVIIIFFITSADSGALVLANTSSRG 388 (453)
T ss_pred hhHHHHHHHHCcHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 56666666655 22344455555555667788999888888877654
No 75
>TIGR00930 2a30 K-Cl cotransporter.
Probab=93.82 E-value=19 Score=42.99 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=53.2
Q ss_pred hCCCCChHHHHHHH-HHhhhhhhhhccccHHHhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHh--cCCCCchHHHHHh
Q psy16064 50 AGRSIGKIVGVLTL-IATWGGGSYFTGTAESLFSTGLLWCQ--APVGYSLTLVAGALIFAKPMRD--AGYITMLDPFQKT 124 (515)
Q Consensus 50 aGR~l~~~~~~~s~-~at~~s~~~~ig~~g~~y~~G~~~~~--~~~g~~~~~~l~~~~~a~~~rr--~~~~T~~e~~~~R 124 (515)
.+|++|++...+.- +.+.+|...|+-.+..+.+.|....+ +.++. +...+.++=++..--+ -+.=-.+.|+++.
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~-~vtlltaLS~seiaTng~p~aGG~Y~yisra 152 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCC-CVTTITGLSMSAIATNGVVKGGGAYYLISRS 152 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 46789999877666 77788888888888777777854322 22222 2222333334443333 1223355677888
Q ss_pred hCccchhHHHHHHHHHH
Q psy16064 125 YGRRIGGLLFLPALLGD 141 (515)
Q Consensus 125 fg~~~~~l~ai~~ii~~ 141 (515)
+|.......++...+..
T Consensus 153 lGp~~Gf~iG~~~~la~ 169 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFAN 169 (953)
T ss_pred hCcHHHHHHHHHHHHHH
Confidence 99876555555444333
No 76
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=91.90 E-value=23 Score=39.04 Aligned_cols=48 Identities=4% Similarity=-0.157 Sum_probs=29.2
Q ss_pred CccchHHHHHHHhC-chhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHH
Q psy16064 303 ESNSVLPLVLRYLT-PGWVTFFGLGAVSASVMSSADSVILGSGSMFTRN 350 (515)
Q Consensus 303 ~~d~~~p~~~~~~l-p~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~D 350 (515)
+++.++..+.+++. +..+..+++..++--...|+||.-.+.++.-++.
T Consensus 389 ~~~~alf~~l~~lPl~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g 437 (504)
T PRK03356 389 GVARAIIETWAALPLSTATMWGFFILCFIATVTLINACSYTLAMSTCRE 437 (504)
T ss_pred ChhhHHHHHHHHCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCC
Confidence 45667767776652 2233333333344455778999888888887754
No 77
>PLN03074 auxin influx permease; Provisional
Probab=91.43 E-value=25 Score=38.47 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=17.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16064 253 LKSSTDAVNVSLISATACFFIVIPAAIIG 281 (515)
Q Consensus 253 ak~~~~ar~~~~~~~~~~~~~~~~~~~iG 281 (515)
.|++++-++...+........+++..+.|
T Consensus 259 M~~P~~F~~~~~l~~~~v~~~y~~~~~~g 287 (473)
T PLN03074 259 MWKPQKFKYIYLAATLYVLTLTLPSAAAV 287 (473)
T ss_pred ccChhcccchHHHHHHHHHHHHHHHHHee
Confidence 46888888776666555555555543333
No 78
>PTZ00206 amino acid transporter; Provisional
Probab=89.89 E-value=33 Score=37.35 Aligned_cols=83 Identities=10% Similarity=0.024 Sum_probs=47.8
Q ss_pred HHHHHHHHhhhhhhhhccccHHHhhhhhH-HHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHHH
Q psy16064 58 VGVLTLIATWGGGSYFTGTAESLFSTGLL-WCQA-PVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFL 135 (515)
Q Consensus 58 ~~~~s~~at~~s~~~~ig~~g~~y~~G~~-~~~~-~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~ai 135 (515)
..++.+..+.+| ...++.|....+.|+. +... .+...++.. ....+.+--++.+..|..|.-++-||++.+.+..+
T Consensus 64 ~s~fnL~~~~iG-aGILsLP~Af~~~G~v~giillil~a~ls~y-s~~lL~~~~~~~~~~sY~~la~~~~G~~g~~~v~~ 141 (467)
T PTZ00206 64 ASAFNIASSTVG-AGIVGLPSAANSSGLVMAMIYLIIITAMTIF-SIYALGVAADKTNIRTYEGVARVLLGPWGSYYVAA 141 (467)
T ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHhccCCCCCHHHHHHHHhCHHHHHHHHH
Confidence 345555555444 4567788666666765 3221 122222222 23344555556778899999999999877666655
Q ss_pred HHHHHHH
Q psy16064 136 PALLGDM 142 (515)
Q Consensus 136 ~~ii~~~ 142 (515)
..++..+
T Consensus 142 ~~~~~~~ 148 (467)
T PTZ00206 142 TRAFHGF 148 (467)
T ss_pred HHHHHHH
Confidence 4444443
No 79
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=88.58 E-value=38 Score=36.30 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=74.8
Q ss_pred HHhcCCChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHHHHhCchhHHHHH
Q psy16064 249 RILSLKSST----DAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFG 324 (515)
Q Consensus 249 r~~aak~~~----~ar~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~~~~lp~~l~gl~ 324 (515)
|-...+++| ...++.+.++.....++..+.-+|-....... +..|..+++-...++++.+.-..++
T Consensus 212 k~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~----------~~~nG~~IL~~~s~~~fG~~G~~lL 281 (431)
T COG1114 212 KSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAG----------LAANGGQILSAYSQHLFGSYGSILL 281 (431)
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcc----------cccchHHHHHHHHHHHhchhhHHHH
Confidence 444445554 34445555556666777777777744443321 2346778889999999888555555
Q ss_pred HHHHHHHHHHhHhHHHHhhhhhHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHH
Q psy16064 325 LGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSG-ASIYY 392 (515)
Q Consensus 325 l~~llAA~mST~~s~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~~-~~i~~ 392 (515)
.+.+.-|++.|+-+...+++..+. + .-|+.|-|.. ..+.++.+..+|... +.+..
T Consensus 282 ~~iv~lACLTTaiGLi~a~aefF~-----~-~~p~~SY~~~-------v~if~i~sflvan~GL~~Ii~ 337 (431)
T COG1114 282 GLIVFLACLTTAVGLIVACAEFFS-----K-LVPKLSYKTW-------VIIFTLISFLVANLGLEQIIK 337 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----H-hcccccHHHH-------HHHHHHHHHHHHHhhHHHHHH
Confidence 556777999999998888766554 3 1234444433 355667777777543 34444
No 80
>PRK10836 lysine transporter; Provisional
Probab=88.41 E-value=42 Score=36.59 Aligned_cols=92 Identities=12% Similarity=-0.093 Sum_probs=53.5
Q ss_pred ChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCchHH
Q psy16064 43 GEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLW-CQAPVGYSLTLVAGALIFAKPMRDAG-YITMLDP 120 (515)
Q Consensus 43 s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~-~~~~~g~~~~~~l~~~~~a~~~rr~~-~~T~~e~ 120 (515)
+.||.-+ .|+++.+-..+-..++.+|+.-|++........|-.+ .+..+..++...+.+.-+++.-.+.+ .=...+|
T Consensus 7 ~~~~~~l-~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y 85 (489)
T PRK10836 7 TTEAPGL-RRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATY 85 (489)
T ss_pred cCCcccc-cccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Confidence 3444333 5889999988888899999888888776666666542 32222223444455566677665543 2234444
Q ss_pred HHHhhCccchhHHHH
Q psy16064 121 FQKTYGRRIGGLLFL 135 (515)
Q Consensus 121 ~~~Rfg~~~~~l~ai 135 (515)
-++.+|+......+.
T Consensus 86 ~~~~~g~~~gf~~Gw 100 (489)
T PRK10836 86 GQNYVEEGFGFALGW 100 (489)
T ss_pred HHHHcChHHHHHHHH
Confidence 444444444333333
No 81
>KOG1287|consensus
Probab=87.62 E-value=32 Score=37.65 Aligned_cols=145 Identities=15% Similarity=0.208 Sum_probs=73.1
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhh-hhHHH---HHHHHHHHHHHHHHHHHHH---HHHhcCCCCchHHHHH
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFST-GLLWC---QAPVGYSLTLVAGALIFAK---PMRDAGYITMLDPFQK 123 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~-G~~~~---~~~~g~~~~~~l~~~~~a~---~~rr~~~~T~~e~~~~ 123 (515)
.|+++.+-...-++++.+|+.-|+.-. .+.++ |-.+. .|.....++ ++.++-.++ -++|+|. -.-|+.+
T Consensus 11 ~kkigll~~v~livg~iIGsGIFvsp~-~Vl~~~gsvg~sL~iWv~~gi~s-~~galcyaELGT~ipksGg--d~ayi~~ 86 (479)
T KOG1287|consen 11 KKKIGLLSGVSLIVGNIIGSGIFVSPK-GVLANTGSVGLSLIIWVFCGIIS-IIGALCYAELGTSIPKSGG--DYAYISE 86 (479)
T ss_pred cceeeeecceeEEEEeeEecccccCcH-HHHHcCCchhHHHHHHHHHHHHH-HHHHHHHHHHhccccCCCc--chhhHHH
Confidence 566776666655566666666555444 44444 32221 112111121 223444444 3577665 3567888
Q ss_pred hhCccchhHHHHHHHHHHHHHH-HHHHHhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhh
Q psy16064 124 TYGRRIGGLLFLPALLGDMLYL-SSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVIL 202 (515)
Q Consensus 124 Rfg~~~~~l~ai~~ii~~~~~l-a~~l~a~g~~~~~~~~~lp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~ 202 (515)
-||+...-.......+...+.. +.+-...++ ..++..+
T Consensus 87 afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~-----------------------------------------Y~l~p~f 125 (479)
T KOG1287|consen 87 AFGPFPAFLFLWVSLLIIVPTSAAIIALTFAT-----------------------------------------YLLKPFF 125 (479)
T ss_pred HhccchhHHHHHHHHHHHhhhHHHHHHHHHHH-----------------------------------------HhhcccC
Confidence 8988754443444433333322 222222221 2344444
Q ss_pred ---CCchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH
Q psy16064 203 ---GISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIV 241 (515)
Q Consensus 203 ---gi~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ 241 (515)
+.|.. +.-..+...+.+...=+..+|-|+-.+|.+..+
T Consensus 126 p~c~~p~~-~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~ 166 (479)
T KOG1287|consen 126 PLCDVPRV-ASKLLAAALLVLLTLINSFSVKWATRVQIVFTI 166 (479)
T ss_pred CCCCCchH-HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 34444 444455555555555666777788888887643
No 82
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=82.90 E-value=75 Score=34.45 Aligned_cols=90 Identities=11% Similarity=-0.088 Sum_probs=50.7
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhCcc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTG-LLWCQAPVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYGRR 128 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G-~~~~~~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg~~ 128 (515)
.|+++.+-...--++.......+....+.+...| -...|..+...++..+.+.-+++.-.+. ..=..++|.++.+|+.
T Consensus 12 ~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g~~ 91 (475)
T TIGR03428 12 HRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEV 91 (475)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcCcc
Confidence 5788877654333322223344455566666553 3333333333455556677777776665 3346788888889887
Q ss_pred chhHHHHHHHHH
Q psy16064 129 IGGLLFLPALLG 140 (515)
Q Consensus 129 ~~~l~ai~~ii~ 140 (515)
...+.+....+.
T Consensus 92 ~gf~~gW~~~~~ 103 (475)
T TIGR03428 92 IGWFAGWFMIIA 103 (475)
T ss_pred ccHHHHHHHHHH
Confidence 655555544443
No 83
>KOG1286|consensus
Probab=81.16 E-value=58 Score=36.44 Aligned_cols=103 Identities=14% Similarity=0.026 Sum_probs=58.3
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC--CchHHHHHhhCc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAP-VGYSLTLVAGALIFAKPMRDAGYI--TMLDPFQKTYGR 127 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~-~g~~~~~~l~~~~~a~~~rr~~~~--T~~e~~~~Rfg~ 127 (515)
.|.++++-+.+.-.++.+|+.-++|........|-++.... .-.+...++.+.-+++.--|.+.. +..-|-.+-.|+
T Consensus 29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~e 108 (554)
T KOG1286|consen 29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVGE 108 (554)
T ss_pred hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeCc
Confidence 57788888777778899999999999888888776654321 112233333444444544444432 122222222333
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhc
Q psy16064 128 RIGGLLFLPALLGDMLYLSSVLSSLG 153 (515)
Q Consensus 128 ~~~~l~ai~~ii~~~~~la~~l~a~g 153 (515)
...-..+.--++..+.-.+.+.++.+
T Consensus 109 ~~aF~~gWny~l~y~i~~a~e~~a~s 134 (554)
T KOG1286|consen 109 SLAFAIGWNYLLEYVIGLAAEARAWS 134 (554)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33334444444555555667777665
No 84
>PRK15015 carbon starvation protein A; Provisional
Probab=76.04 E-value=32 Score=38.96 Aligned_cols=126 Identities=10% Similarity=0.111 Sum_probs=66.4
Q ss_pred CccccchhhHH-HHHHHHHHHHHHHHHHhhcc-C----C-------CChhhHHHhCCCCChHHHHHHHHHhhhhhhhhcc
Q psy16064 9 GSRMIDVYGIA-GILTFYSIVLVVGIWAGTKQ-K----N-------HGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTG 75 (515)
Q Consensus 9 ~~~~~~~~~~i-~i~~y~~~~l~ig~~~~r~~-~----~-------~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig 75 (515)
||+|...+..+ .++.|.+.--..|.+..+|. + + +|-.||.=.+| +++..-.+++.=++.-++|
T Consensus 29 ge~mnal~lv~aa~~~y~iaYrfYgr~ia~kv~~lD~~r~TPA~~~~DG~DYvPt~k----~VLfGHHFasIAGAGPivG 104 (701)
T PRK15015 29 GEQINALWIVVASVCIYLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTDK----KVLFGHHFAAIAGAGPLVG 104 (701)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceECCCCCCcCcCCc----cchhHHHHHHHhccCccHH
Confidence 45555543332 33334444555566554554 1 1 34467766655 5666666666666666666
Q ss_pred ccHHHhhhhhH-H-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHHHHHHH
Q psy16064 76 TAESLFSTGLL-W-CQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALL 139 (515)
Q Consensus 76 ~~g~~y~~G~~-~-~~~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~ai~~ii 139 (515)
.. .+.+.|+- + +|..+|..+.--.-=+...----|++-.|+.|..++--|++.+.+..+..++
T Consensus 105 Pv-lAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lfli~i~~ 169 (701)
T PRK15015 105 PV-LAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIALVACFM 169 (701)
T ss_pred HH-HHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55 44466652 2 3444433211110000000011467888999999999998877665444333
No 85
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=75.74 E-value=0.22 Score=52.42 Aligned_cols=84 Identities=11% Similarity=0.050 Sum_probs=48.6
Q ss_pred CCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHH----hcCCCCchHHHHHhhC
Q psy16064 52 RSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLW-CQAPVGYSLTLVAGALIFAKPMR----DAGYITMLDPFQKTYG 126 (515)
Q Consensus 52 R~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~-~~~~~g~~~~~~l~~~~~a~~~r----r~~~~T~~e~~~~Rfg 126 (515)
|+-+++-..+.+..+.+| ...++.|...++.|+.. ....+............+.+-.+ +.+..|..|.-++-||
T Consensus 1 ~~~s~~~~~~~l~~~~iG-~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIG-AGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHh-HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 345666677777666655 44577887777777642 22222222222222333333332 3578899999998899
Q ss_pred ccchhHHHHH
Q psy16064 127 RRIGGLLFLP 136 (515)
Q Consensus 127 ~~~~~l~ai~ 136 (515)
++.+.+..+.
T Consensus 80 ~~~~~~~~~~ 89 (409)
T PF01490_consen 80 PKGKWFVDIC 89 (409)
T ss_pred ccccccccch
Confidence 8776555443
No 86
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=75.37 E-value=1.1e+02 Score=32.35 Aligned_cols=118 Identities=12% Similarity=0.008 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCC------------CChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhh
Q psy16064 17 GIAGILTFYSIVLVVGIWAGTKQKN------------HGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTG 84 (515)
Q Consensus 17 ~~i~i~~y~~~~l~ig~~~~r~~~~------------~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G 84 (515)
..+.+++|.+.-...|-+..||..+ +|-.||.=.+ +|....-.+++.=++.-++|.. .+...|
T Consensus 7 ~~~~~~~l~~~Y~~Yg~~l~~~~~~~d~~~~TPA~~~~DGvDYvP~~----~~vlfghhf~sIAGaGPI~GPi-~aa~~G 81 (376)
T PF02554_consen 7 FLISLAILIIAYRFYGKFLEKKFGKLDDSRPTPAHTMNDGVDYVPTN----KWVLFGHHFASIAGAGPIVGPI-LAAQFG 81 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeccCCCCCCCCeeECCCCCCCCCCc----hHHhhHHHHHHHhccccchHHH-HHHHhc
Confidence 3445555566666777777776541 3345676544 4666656665554555555544 557777
Q ss_pred hH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhCccchhHHHHHHHH
Q psy16064 85 LL--WCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALL 139 (515)
Q Consensus 85 ~~--~~~~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~~~~~l~ai~~ii 139 (515)
+. .+|..+|....--.-=+.-.----|++-.|++|..++.-|++.|.+..+..++
T Consensus 82 wlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf~~f~~~ 138 (376)
T PF02554_consen 82 WLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLFLIFIFF 138 (376)
T ss_pred chHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 34555554322211111111112567888999999999999887766554443
No 87
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=73.07 E-value=68 Score=35.27 Aligned_cols=120 Identities=9% Similarity=0.012 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCCCCCCCCCCc---cchHHHHHHHhCc
Q psy16064 242 FGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWS-KIPGYDKPFDMTES---NSVLPLVLRYLTP 317 (515)
Q Consensus 242 ig~~~~qr~~aak~~~~ar~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~-~~~g~p~~~~~~~~---d~~~p~~~~~~lp 317 (515)
+.-+.+++....|++|++|+.....+++++.......+.+.......|+ .....| .+..-+ ...+|-...
T Consensus 254 i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~p~~~~---- 327 (493)
T COG0591 254 ILPRFMAAKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLN--PELVFPYLILALFPPWIA---- 327 (493)
T ss_pred hhhhhhhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCC--HHHHHHHHHHHHChHHHH----
Confidence 3446777777777788999999999998888777777778777666653 111000 011112 223343332
Q ss_pred hhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHHhhhhccCCCCChHHHHHH
Q psy16064 318 GWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWV 368 (515)
Q Consensus 318 ~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~ 368 (515)
..+..-+++++.+++.|..++..++.+--+-|++.++ -..+.+....-|.
T Consensus 328 g~~~~ailaAvmSt~ss~ll~~ss~~t~Diyk~~~~~-~a~~k~l~~i~r~ 377 (493)
T COG0591 328 GLLLAAILAAVMSTASSQLLVASSAITRDIYKRFLRK-NASEKELVRIGRV 377 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCC-CCChhHhhHHHHH
Confidence 3445555677899999999999999999999999987 4444444433333
No 88
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=68.60 E-value=2e+02 Score=32.06 Aligned_cols=101 Identities=14% Similarity=0.034 Sum_probs=61.0
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHH-HH--HHHHHHHHHHHHhcCCCCchHHHHHhhCc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSL-TL--VAGALIFAKPMRDAGYITMLDPFQKTYGR 127 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~-~~--~l~~~~~a~~~rr~~~~T~~e~~~~Rfg~ 127 (515)
.|++..-.+.+-..+..+|+.-|+|....-.+.|..+.. ++|.+ |. ...+.=+++.---.+...--.-...||=+
T Consensus 43 kR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~l--i~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 43 KRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLL--IAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 488888888888889999999999999888888877653 23332 21 11222223332233422223345667766
Q ss_pred cc-hhHHHHHHHHHHHHHHHHHHHhhc
Q psy16064 128 RI-GGLLFLPALLGDMLYLSSVLSSLG 153 (515)
Q Consensus 128 ~~-~~l~ai~~ii~~~~~la~~l~a~g 153 (515)
+. .-..+..-.+....-++.|+.+.+
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~ 147 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAAS 147 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 63 333344444444556678888877
No 89
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=67.03 E-value=41 Score=36.42 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=45.2
Q ss_pred hhhhhhhhccccHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhCccchhHHHHHHHHHHHH
Q psy16064 66 TWGGGSYFTGTAESLFSTGLLWCQ-APVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYGRRIGGLLFLPALLGDML 143 (515)
Q Consensus 66 t~~s~~~~ig~~g~~y~~G~~~~~-~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~~~ 143 (515)
...+...|+|........|..+.. ..+-..+...+.+.-+++.-|+. ..=..++|.++-.|++.....++.-.+..+.
T Consensus 9 ~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~~~ 88 (478)
T PF00324_consen 9 GIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLSYIA 88 (478)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHHHHH
Confidence 344555666666555555653322 11222233333333444544553 3335667777777776655555554455555
Q ss_pred HHHHHHHhhc
Q psy16064 144 YLSSVLSSLG 153 (515)
Q Consensus 144 ~la~~l~a~g 153 (515)
..+.+..+.+
T Consensus 89 ~~~~~~~~~~ 98 (478)
T PF00324_consen 89 AIAAEATAAG 98 (478)
T ss_pred HHHhhhhhhh
Confidence 5555555554
No 90
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=64.84 E-value=2.1e+02 Score=30.95 Aligned_cols=69 Identities=16% Similarity=0.034 Sum_probs=39.5
Q ss_pred hhccccHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhCccchhHHHHHHHHHH
Q psy16064 72 YFTGTAESLFSTGLLWC-QAPVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYGRRIGGLLFLPALLGD 141 (515)
Q Consensus 72 ~~ig~~g~~y~~G~~~~-~~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg~~~~~l~ai~~ii~~ 141 (515)
++-+.|.. ...|.+.. ++.++..+.++..++.+++.-++. +.=...+|.++.||++..-..+....+..
T Consensus 18 ~~~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf~~gw~~w~~~ 88 (474)
T TIGR03813 18 SLRGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGFLAIFMLWAQV 88 (474)
T ss_pred HhhcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHHHHHHHHHHHH
Confidence 44444544 45676543 334443334444666677665553 23467899999999987655554444333
No 91
>KOG1304|consensus
Probab=57.04 E-value=2.9e+02 Score=30.10 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=30.1
Q ss_pred CchHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH
Q psy16064 204 ISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL 244 (515)
Q Consensus 204 i~~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~ 244 (515)
+|..+-+++.....+.-....=+|..+-...+--+++++|.
T Consensus 177 ~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~ 217 (449)
T KOG1304|consen 177 LSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGL 217 (449)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHH
Confidence 55566666667777777778888888877777777777766
No 92
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=55.23 E-value=3.3e+02 Score=30.10 Aligned_cols=372 Identities=12% Similarity=0.059 Sum_probs=171.1
Q ss_pred hCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCCCchHHHHHhhCc
Q psy16064 50 AGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFA--KPMRDAGYITMLDPFQKTYGR 127 (515)
Q Consensus 50 aGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~a--~~~rr~~~~T~~e~~~~Rfg~ 127 (515)
.+|+-++|-.+.--.+...+..+.+-.+ ...+.|+++....+...+|..++..... .+.-..--...|...|.-||-
T Consensus 37 ~~rtWg~~~~~~~W~~~~~nv~~~~~aa-~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi 115 (497)
T COG1953 37 EQRTWGWWNYFALWLGMVHNVPTYMLAA-GLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGI 115 (497)
T ss_pred ccCcchHHHHHHHHHHhhccHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhh
Confidence 4677788776654444444444333333 3345677765444444455544332221 111112334778888888885
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhchhhhh-hhhhhhh-hhhhhhhhhhhhhhhhhhhhccccccccchhhhHhhhCCc
Q psy16064 128 RIGGLLFLPALLGDMLYLSSVLSSLGKQAKA-SLLFLPA-LLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGIS 205 (515)
Q Consensus 128 ~~~~l~ai~~ii~~~~~la~~l~a~g~~~~~-~~~~lp~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~gi~ 205 (515)
.....-++.=.+..+.|-..|-...|.-..+ .....|. +.+ .-.....|++
T Consensus 116 ~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~---------------------------~~~~~~lg~t 168 (497)
T COG1953 116 YGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIP---------------------------NTLSPLLGLT 168 (497)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccC---------------------------CccccccCCc
Confidence 4322222222233345667776666521000 0000111 000 0011123333
Q ss_pred --hHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHH--------------------------------------H
Q psy16064 206 --DYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL--------------------------------------S 245 (515)
Q Consensus 206 --~~~~i~i~~~iv~~Yt~~GGl~av~~tD~iQ~iim~ig~--------------------------------------~ 245 (515)
...+-+ ..=..-.....-|++.+-+-..+.+.+..+.. .
T Consensus 169 t~~~i~F~-ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~ 247 (497)
T COG1953 169 TLELICFF-IFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIA 247 (497)
T ss_pred HHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHH
Confidence 222222 22233345566778877777777766644332 1
Q ss_pred HHHHHhc------------CCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccchHHHHH
Q psy16064 246 YFQRILS------------LKSSTDAVNVSLISATAC-FFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVL 312 (515)
Q Consensus 246 ~~qr~~a------------ak~~~~ar~~~~~~~~~~-~~~~~~~~~iG~~~~~~~~~~~~g~p~~~~~~~~d~~~p~~~ 312 (515)
.+...++ +||+|+.+++..++.... .++.+......-.+...+ . .+.-||.++.
T Consensus 248 ~~v~~~Atl~lN~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~ly-G--------~~~w~P~di~---- 314 (497)
T COG1953 248 AWVGFWATLALNIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILY-G--------ETIWDPLDIV---- 314 (497)
T ss_pred HHHHHHHHHhcCCchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhh-C--------cccCCHHHHH----
Confidence 1111111 677788877755554332 233332222222233222 1 1233565554
Q ss_pred HHhCchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhc----ch
Q psy16064 313 RYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALS----GA 388 (515)
Q Consensus 313 ~~~lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~~----~~ 388 (515)
++..+..... ++ +.+.=+++|.+....+..-.-.+|+-.- -|+.-+ ..| ..++.+++++++.-. .+
T Consensus 315 ~~~~~~~~~~-fl-~~l~~~iati~~Ni~aN~vsp~~D~s~l--~Pk~in-----~kr-g~liaA~ial~~~PW~l~~s~ 384 (497)
T COG1953 315 ARFLSGFYAA-FL-AGLTFAVATISTNIAANIVSPGYDLSAL--FPKYIN-----IKR-GGLIAAIIALLICPWNLLESS 384 (497)
T ss_pred HHhccchHHH-HH-HHHHHHHHHHhhhHHhccCChHHHHHHh--cccccc-----hhh-hHHHHHHHHHHHcChHHHcCc
Confidence 3344333333 22 3455667777777777777777888643 232222 112 223444555555422 12
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHhh--cCCC-----------------CChHHHHHHHHHHHHHHHHh--ccCCCCCCc
Q psy16064 389 SIYYLSVVCSDVVYVTLFPQLVLVVH--GANH-----------------VNSYGCLSSVVIGILLRITG--GEPNLGLPA 447 (515)
Q Consensus 389 ~i~~l~~~~~~~~~~~l~~~ll~gl~--wkr~-----------------~t~~ga~~s~i~G~~~~~~~--~~~~~~~~~ 447 (515)
+.+..+..+++.+-+++...++.--| .|++ .-..-|+++.+.|++..+.. . +
T Consensus 385 s~f~~~L~~yg~~LgpiaGVmiaDyflirk~~~~v~~ly~~~G~y~y~~G~N~rA~~A~~~G~~~~l~Gv~~-----~-- 457 (497)
T COG1953 385 SSFTTFLGSYGVFLGPIAGVMIADYFLVRKGRLNLDELYTEPGEYYYYGGWNWRAFAAYLCGVAPSLPGVGK-----V-- 457 (497)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccChHHhcCCCCCeEEecCcCHHHHHHHHHhhhccccchhc-----C--
Confidence 33322333333333455554444332 1211 12256788888888776643 1 1
Q ss_pred cccCCCCccccccccchhhHHHHHHHHHHhhhhhcccccc
Q psy16064 448 LIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIV 487 (515)
Q Consensus 448 ~~~~~~~~~~~~~~~~p~~~~~~~~s~i~~vvvSl~t~~~ 487 (515)
.|+...- ..+. .++++.+++.++...-+..|.+
T Consensus 458 ---~~~~~~~---~~~~-wF~G~~ia~~iY~~L~~~~p~~ 490 (497)
T COG1953 458 ---PPGLPPL---YYYG-WFVGVLLAFLIYWGLCKFFPFK 490 (497)
T ss_pred ---Ccccchh---hhhh-HHHHHHHHHHHHHHHHhhcCCC
Confidence 1211110 0011 2468888988888865554433
No 93
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=50.14 E-value=3.7e+02 Score=29.23 Aligned_cols=101 Identities=15% Similarity=0.016 Sum_probs=53.3
Q ss_pred hHHHHHHHh-CchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q psy16064 307 VLPLVLRYL-TPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIAL 385 (515)
Q Consensus 307 ~~p~~~~~~-lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~~Ri~~~~v~~~~~~~a~ 385 (515)
.+|.+.+++ +...+..++...++-|.+|+.-|.+-...+.+.++.= .+.|+. .-+...++.++++..++
T Consensus 290 ~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSmlE~~va~l~~~~~-------~~R~~a---~~~~~~~~fl~gi~~~l 359 (439)
T COG0733 290 VLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLEVLVAALIDKFG-------ISRKKA---TWLIGILIFLLGIPSIL 359 (439)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------cchHHH---HHHHHHHHHHHhHHHHh
Confidence 457777665 2334556666777778888888888888777754431 112222 22233444455555555
Q ss_pred cch-hHHHHHHHHHH---hhhhhhHHHHHHHhhcCC
Q psy16064 386 SGA-SIYYLSVVCSD---VVYVTLFPQLVLVVHGAN 417 (515)
Q Consensus 386 ~~~-~i~~l~~~~~~---~~~~~l~~~ll~gl~wkr 417 (515)
..+ +++|.+-...+ +-.+.+.-.+..++.+||
T Consensus 360 s~g~~~fD~~D~~~s~~l~plgaL~~~i~~~w~~~~ 395 (439)
T COG0733 360 SFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKK 395 (439)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 443 45554433222 222334444555555553
No 94
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=49.27 E-value=18 Score=26.53 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=22.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhccCCCChhh
Q psy16064 12 MIDVYGIAGILTFYSIVLVVGIWAGTKQKNHGEEE 46 (515)
Q Consensus 12 ~~~~~~~i~i~~y~~~~l~ig~~~~r~~~~~s~~d 46 (515)
..+....+..++++++.+++-+|..|+.++++.||
T Consensus 6 ~~~~~~~~~~v~~~~~F~gi~~w~~~~~~k~~~e~ 40 (49)
T PF05545_consen 6 LQGFARSIGTVLFFVFFIGIVIWAYRPRNKKRFEE 40 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHH
Confidence 34556666777777777787788877665334444
No 95
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=48.58 E-value=3.8e+02 Score=28.92 Aligned_cols=32 Identities=13% Similarity=-0.277 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhcC-CCCchHHHHHhhCc
Q psy16064 96 LTLVAGALIFAKPMRDAG-YITMLDPFQKTYGR 127 (515)
Q Consensus 96 ~~~~l~~~~~a~~~rr~~-~~T~~e~~~~Rfg~ 127 (515)
+..++.+.-+++.-.+.+ .=...+|.++-+|+
T Consensus 58 i~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~g~ 90 (482)
T TIGR00907 58 AGSICIALSLAELSSAYPTSGGQYFWSAKLAPP 90 (482)
T ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHhccc
Confidence 444455666677665543 23566665555554
No 96
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=41.83 E-value=3.9e+02 Score=29.94 Aligned_cols=92 Identities=16% Similarity=0.041 Sum_probs=54.1
Q ss_pred CChhhHHHhCCCCChHHHHHHHHHhhhhhhhhccccHHHhhhh-hHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH
Q psy16064 42 HGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTG-LLW-CQAPVGYSLTLVAGALIFAKPMRDAGYITMLD 119 (515)
Q Consensus 42 ~s~~dy~laGR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G-~~~-~~~~~g~~~~~~l~~~~~a~~~rr~~~~T~~e 119 (515)
+|-.||.=.+ +++...-.+++.=++.=++|. -.+.++| +.+ +|..+|...+--.-=++..----|++-.|++|
T Consensus 44 nDG~DYVPtn----k~vlfGhHFaaIAGAGPivGP-vlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ 118 (575)
T COG1966 44 NDGVDYVPTN----KWVLFGHHFASIAGAGPIVGP-ALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGE 118 (575)
T ss_pred cCCcccccCC----chhhhHHHHHHHhccCcchhH-HHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHH
Confidence 3456776554 466666667665566666664 4778888 444 45555443222111111111125678889999
Q ss_pred HHHHhhCccchhHHHHHHH
Q psy16064 120 PFQKTYGRRIGGLLFLPAL 138 (515)
Q Consensus 120 ~~~~Rfg~~~~~l~ai~~i 138 (515)
.-++--|+..+.+..+..+
T Consensus 119 ia~~~lG~~a~~~~~~~~l 137 (575)
T COG1966 119 IAGKYLGRTAKVFFLLLAL 137 (575)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 9999999887766544433
No 97
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=38.36 E-value=4.1e+02 Score=26.40 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=19.9
Q ss_pred HhHHHHhhhhhHHHHhhhhccCCCCChHHHHHHHH
Q psy16064 336 ADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLR 370 (515)
Q Consensus 336 ~~s~l~~~ss~~~~Di~~~~~~~~~s~k~~~~~~R 370 (515)
.|..+..+|+. ++++++ +|+.+.||..+.++
T Consensus 141 mDvaisIaSsl--~El~~~--~p~is~~eL~~SG~ 171 (244)
T PF07907_consen 141 MDVAISIASSL--FELKRH--NPDISRKELFKSGM 171 (244)
T ss_pred HHHHHHHHHHH--HHHHHh--CCCCCHHHHHHHHH
Confidence 34444444433 578877 89999999876553
No 98
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=33.43 E-value=6e+02 Score=26.79 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=45.0
Q ss_pred CCCCChHH-HHHHHHHhhhhhhhhccccHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhhC
Q psy16064 51 GRSIGKIV-GVLTLIATWGGGSYFTGTAESLFSTG--LLWCQAPVGYSLTLVAGALIFAKPMRDA-GYITMLDPFQKTYG 126 (515)
Q Consensus 51 GR~l~~~~-~~~s~~at~~s~~~~ig~~g~~y~~G--~~~~~~~~g~~~~~~l~~~~~a~~~rr~-~~~T~~e~~~~Rfg 126 (515)
.|+++.+- ......++..+ ......++.....+ ....| .++ .+...+.++.+++.-++. +.=..++|.++-+|
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~-~gif~~~~~~~~~~~~~~~~~-li~-~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g 87 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIG-SGIFALPGSAAGLAPAAILAW-LIA-GIIILFLALSYAELSSAIPSAGGAYAYAKRALG 87 (466)
T ss_pred CCCcchHHHHHHHHHHhhHh-hhhHhhhhhHHHhchHHHHHH-HHH-HHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcC
Confidence 45677776 33333444444 33344444444432 12222 222 222223345555555442 23368889999999
Q ss_pred ccchhHHHHHHHHHHHHH
Q psy16064 127 RRIGGLLFLPALLGDMLY 144 (515)
Q Consensus 127 ~~~~~l~ai~~ii~~~~~ 144 (515)
++.....+....+.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~ 105 (466)
T COG0531 88 PRLGFLAGWLYLLAYVIA 105 (466)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 886655555444444333
No 99
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=30.75 E-value=6.2e+02 Score=27.31 Aligned_cols=37 Identities=11% Similarity=0.022 Sum_probs=26.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16064 245 SYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIG 281 (515)
Q Consensus 245 ~~~qr~~aak~~~~ar~~~~~~~~~~~~~~~~~~~iG 281 (515)
...-|.+.+||.+++|+...-+.....+.+++..++.
T Consensus 78 ~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 114 (455)
T COG0534 78 VLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILL 114 (455)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778899999999988777666666554444443
No 100
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=30.28 E-value=2.5e+02 Score=28.58 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=18.1
Q ss_pred HHHHhhcCCCCChHH-HHHHHHHHHHHHH
Q psy16064 409 LVLVVHGANHVNSYG-CLSSVVIGILLRI 436 (515)
Q Consensus 409 ll~gl~wkr~~t~~g-a~~s~i~G~~~~~ 436 (515)
++..-+-|| .|... .+.|...|...-.
T Consensus 119 ~~~yp~~KR-~t~~~~~~lG~~~g~~~l~ 146 (286)
T PRK12895 119 FIIDPFLKR-YTAWRHIYMGSIIGLGVLA 146 (286)
T ss_pred HHHHHHHHh-CccccHHHHHHHHHhHHHH
Confidence 445556788 88877 5678888754433
No 101
>PLN02776 prenyltransferase
Probab=28.80 E-value=5e+02 Score=27.24 Aligned_cols=17 Identities=12% Similarity=0.181 Sum_probs=13.1
Q ss_pred hcCCCCChHHHHHHHHHH
Q psy16064 414 HGANHVNSYGCLSSVVIG 431 (515)
Q Consensus 414 ~wkr~~t~~ga~~s~i~G 431 (515)
+.|| .|....+.|.+.|
T Consensus 118 ~lKR-~t~~~~~lG~~~G 134 (341)
T PLN02776 118 PLKQ-IHPANTWVGAVVG 134 (341)
T ss_pred hHcc-CCchhHHHHHHHH
Confidence 3788 7877778788877
No 102
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=28.78 E-value=80 Score=20.75 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=8.9
Q ss_pred CCcCccccchhhHHHH
Q psy16064 6 SITGSRMIDVYGIAGI 21 (515)
Q Consensus 6 ~~~~~~~~~~~~~i~i 21 (515)
|-|||...+...++.+
T Consensus 3 P~TG~~~~~~~~~~G~ 18 (34)
T TIGR01167 3 PKTGESGNSLLLLLGL 18 (34)
T ss_pred CCCCCcccHHHHHHHH
Confidence 5577755555444444
No 103
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=24.90 E-value=9.4e+02 Score=26.34 Aligned_cols=78 Identities=13% Similarity=-0.021 Sum_probs=42.7
Q ss_pred CCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhc--CCCCchHHHHHhhCcc
Q psy16064 52 RSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWC-QAPVGYSLTLVAGALIFAKPMRDA--GYITMLDPFQKTYGRR 128 (515)
Q Consensus 52 R~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~-~~~~g~~~~~~l~~~~~a~~~rr~--~~~T~~e~~~~Rfg~~ 128 (515)
|+++.+-..+-.+++.. +.-+.| ..+..|++.. |+.++..+-++..++.+++.-... +.=...+|.++-||++
T Consensus 4 ~~l~~~~~~~~~~~~v~---~~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~ 79 (507)
T TIGR00910 4 KKLSLFGFFAITASMVL---AVYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGER 79 (507)
T ss_pred cEeeHHHHHHHHHHHHH---HHHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCcc
Confidence 44555544433333332 334555 3567787664 334433333344566667665432 3346888999999988
Q ss_pred chhHH
Q psy16064 129 IGGLL 133 (515)
Q Consensus 129 ~~~l~ 133 (515)
.+.+.
T Consensus 80 ~Gf~~ 84 (507)
T TIGR00910 80 FGFAA 84 (507)
T ss_pred HHHHH
Confidence 65443
No 104
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=23.52 E-value=1.2e+02 Score=22.31 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=15.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccC
Q psy16064 14 DVYGIAGILTFYSIVLVVGIWAGTKQK 40 (515)
Q Consensus 14 ~~~~~i~i~~y~~~~l~ig~~~~r~~~ 40 (515)
+..+...++.++++.+++-+|+.++.+
T Consensus 9 ~~a~~~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 9 GLADSWGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 344555555555666666667766544
No 105
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=20.07 E-value=1.1e+03 Score=25.47 Aligned_cols=81 Identities=12% Similarity=0.031 Sum_probs=49.6
Q ss_pred CCCCChHHHHHHHHHhhhhhhhhccccHHHhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcC--CCCchHHHHHhhCc
Q psy16064 51 GRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWC-QAPVGYSLTLVAGALIFAKPMRDAG--YITMLDPFQKTYGR 127 (515)
Q Consensus 51 GR~l~~~~~~~s~~at~~s~~~~ig~~g~~y~~G~~~~-~~~~g~~~~~~l~~~~~a~~~rr~~--~~T~~e~~~~Rfg~ 127 (515)
.|+++.+-..+-.+++.+|. -+.|......|.+.. |+.++..+..+..+.-+++.-.+.+ .=..++|.++-||+
T Consensus 6 ~~~l~~~~l~~~~~~~vig~---~~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~ 82 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGF---ANSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGP 82 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhC---CchHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCc
Confidence 46788888766666665652 123322334465543 3444444444556667777766664 35899999999999
Q ss_pred cchhHHH
Q psy16064 128 RIGGLLF 134 (515)
Q Consensus 128 ~~~~l~a 134 (515)
+.+.+.+
T Consensus 83 ~~gf~~~ 89 (496)
T PRK15238 83 KFAFIGT 89 (496)
T ss_pred hHHHHHH
Confidence 8765544
Done!