Query psy16064
Match_columns 515
No_of_seqs 149 out of 1535
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 19:55:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16064.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16064hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 18.1 89 0.0065 21.1 4.6 31 352-384 12-45 (56)
2 d2a65a1 f.54.1.1 (A:5-513) Na( 7.6 7.6E+02 0.055 22.7 23.9 45 307-352 322-367 (509)
3 d1af7a1 a.58.1.1 (A:11-91) Che 3.3 2.6E+02 0.019 19.2 2.1 25 103-127 42-66 (81)
4 d1kqfb2 f.23.22.1 (B:246-290) 2.6 3.5E+02 0.026 17.0 1.8 26 413-439 6-31 (45)
5 d1si2a_ b.34.14.1 (A:) Eukaryo 2.6 1.9E+02 0.014 22.1 0.6 17 113-129 79-95 (126)
6 d1pv7a_ f.38.1.2 (A:) Lactose 1.9 1.5E+03 0.11 17.8 7.2 12 118-129 63-74 (417)
7 d1nekd_ f.21.2.2 (D:) Succinat 1.8 1.3E+03 0.091 16.3 8.1 11 349-359 75-85 (113)
8 d1eysh2 f.23.10.1 (H:7-43) Pho 1.7 8.6E+02 0.062 14.4 2.4 24 17-40 4-29 (37)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 1.6 4.2E+02 0.031 18.9 1.1 22 7-28 20-41 (100)
10 d1d5ya1 a.4.1.8 (A:3-56) Rob t 1.6 4.8E+02 0.035 16.0 1.3 18 105-122 36-53 (54)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=18.14 E-value=89 Score=21.07 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=14.9
Q ss_pred hhhccCCCCChHHHHHHHHHH---HHHHHHHHHHHH
Q psy16064 352 YHQSFRPKASEYELMWVLRLS---ILAASVISCSIA 384 (515)
Q Consensus 352 ~~~~~~~~~s~k~~~~~~Ri~---~~~v~~~~~~~a 384 (515)
.+...||+ .+|..+.++++ .++++.++..+-
T Consensus 12 lk~~~KP~--~~Ef~~ia~v~~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 12 WLVLKKPT--KDEYLAVAKVTALGISLLGIIGYIIH 45 (56)
T ss_dssp HHSEECCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34434554 44444555544 445555555443
No 2
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=7.60 E-value=7.6e+02 Score=22.72 Aligned_cols=45 Identities=9% Similarity=0.105 Sum_probs=32.1
Q ss_pred hHHHHHHHh-CchhHHHHHHHHHHHHHHHhHhHHHHhhhhhHHHHhh
Q psy16064 307 VLPLVLRYL-TPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIY 352 (515)
Q Consensus 307 ~~p~~~~~~-lp~~l~gl~l~~llAA~mST~~s~l~~~ss~~~~Di~ 352 (515)
.+|....+. .|+....++...++-+.+++.-+.+-...+.+ +|-+
T Consensus 322 ~~P~~fs~~~~~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l-~d~~ 367 (509)
T d2a65a1 322 TLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFL-EDEL 367 (509)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTS
T ss_pred hhHHHhhcCCcchhHHHHHHHHHHHHHHHHHhccccchhHHH-HHhc
Confidence 567766654 44556677777788888888888888888877 5543
No 3
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=3.34 E-value=2.6e+02 Score=19.20 Aligned_cols=25 Identities=8% Similarity=-0.015 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCCCchHHHHHhhCc
Q psy16064 103 LIFAKPMRDAGYITMLDPFQKTYGR 127 (515)
Q Consensus 103 ~~~a~~~rr~~~~T~~e~~~~Rfg~ 127 (515)
--+.+|+|+.|+.|..||+..--.+
T Consensus 42 ~RL~~rm~~~g~~s~~~Y~~~L~~~ 66 (81)
T d1af7a1 42 NRLVRRLRALGLDDFGRYLSMLEAN 66 (81)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 3567888999999999999765443
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=2.63 E-value=3.5e+02 Score=17.05 Aligned_cols=26 Identities=4% Similarity=-0.323 Sum_probs=21.0
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhc
Q psy16064 413 VHGANHVNSYGCLSSVVIGILLRITGG 439 (515)
Q Consensus 413 l~wkr~~t~~ga~~s~i~G~~~~~~~~ 439 (515)
-+||. ..|.-+.++|....+..+..+
T Consensus 6 ~lWKg-v~Kpl~~~~~~~~~~~~~fHY 31 (45)
T d1kqfb2 6 SLWKG-ALKPLAAAGFIATFAGLIFHY 31 (45)
T ss_dssp HHHHT-THHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhh-hHHHHHHHHHHHHHHHHHHhh
Confidence 36998 999999999988888777653
No 5
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.61 E-value=1.9e+02 Score=22.11 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.1
Q ss_pred CCCCchHHHHHhhCccc
Q psy16064 113 GYITMLDPFQKTYGRRI 129 (515)
Q Consensus 113 ~~~T~~e~~~~Rfg~~~ 129 (515)
+-.|+.|||.++|+-+.
T Consensus 79 ~~iTV~~YFk~~Y~~~L 95 (126)
T d1si2a_ 79 VECTVAQYFKQKYNLQL 95 (126)
T ss_dssp CEEEHHHHHHHTSCCCC
T ss_pred eEEEHHHHHHHHcCccc
Confidence 45799999999999654
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=1.89 E-value=1.5e+03 Score=17.82 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=8.6
Q ss_pred hHHHHHhhCccc
Q psy16064 118 LDPFQKTYGRRI 129 (515)
Q Consensus 118 ~e~~~~Rfg~~~ 129 (515)
...+.||||+|.
T Consensus 63 ~G~l~Dr~grr~ 74 (417)
T d1pv7a_ 63 FGLLSDKLGLRK 74 (417)
T ss_dssp HHHHHHHHTTCT
T ss_pred HHHHHHHhCchH
Confidence 356778999874
No 7
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=1.78 E-value=1.3e+03 Score=16.33 Aligned_cols=11 Identities=9% Similarity=0.280 Sum_probs=7.6
Q ss_pred HHhhhhccCCC
Q psy16064 349 RNIYHQSFRPK 359 (515)
Q Consensus 349 ~Di~~~~~~~~ 359 (515)
+++.+.|++++
T Consensus 75 ~~IieDYi~~~ 85 (113)
T d1nekd_ 75 WQVLTDYVKPL 85 (113)
T ss_dssp HHHHHHHCCSH
T ss_pred hhhHHHhcCCh
Confidence 66777777753
No 8
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=1.65 E-value=8.6e+02 Score=14.40 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=11.2
Q ss_pred hHHHHHHHHH--HHHHHHHHHhhccC
Q psy16064 17 GIAGILTFYS--IVLVVGIWAGTKQK 40 (515)
Q Consensus 17 ~~i~i~~y~~--~~l~ig~~~~r~~~ 40 (515)
|..-+.+|.. +..+.-+|..|..+
T Consensus 4 D~Aql~ly~Fw~FFagLi~YL~rE~~ 29 (37)
T d1eysh2 4 DAAQITIWAFWLFFFGLIIYLRREDK 29 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444444443 33344456666554
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=1.60 E-value=4.2e+02 Score=18.94 Aligned_cols=22 Identities=5% Similarity=-0.014 Sum_probs=12.5
Q ss_pred CcCccccchhhHHHHHHHHHHH
Q psy16064 7 ITGSRMIDVYGIAGILTFYSIV 28 (515)
Q Consensus 7 ~~~~~~~~~~~~i~i~~y~~~~ 28 (515)
-+++++.+..|.+..+...++.
T Consensus 20 ~~a~~i~~l~~~v~~i~~~I~~ 41 (100)
T d3dtub2 20 PVATQIHWLDGFILVIIAAITI 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666555555443
No 10
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=1.58 E-value=4.8e+02 Score=15.97 Aligned_cols=18 Identities=6% Similarity=0.034 Sum_probs=10.8
Q ss_pred HHHHHHhcCCCCchHHHH
Q psy16064 105 FAKPMRDAGYITMLDPFQ 122 (515)
Q Consensus 105 ~a~~~rr~~~~T~~e~~~ 122 (515)
+.+.+|+.-..|+.||++
T Consensus 36 l~r~Fk~~~g~tp~~yir 53 (54)
T d1d5ya1 36 LQRMFKDVTGHAIGAYIR 53 (54)
T ss_dssp HHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHh
Confidence 445566655567777664
Done!