RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16064
(515 letters)
>gnl|CDD|212044 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline
cotransporter CHT and related proteins; solute-binding
domain. Na+/choline co-transport by CHT is Cl-
dependent. Human CHT (also called CHT1) is encoded by
the SLC5A7 gene, and is expressed in the central nervous
system. hCHT1-mediated choline uptake may be the
rate-limiting step in acetylcholine synthesis, and
essential for cholinergic transmission. Changes in this
choline uptake in cortical neurons may contribute to
Alzheimer's dementia. This subfamily belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 464
Score = 358 bits (922), Expect = e-119
Identities = 167/520 (32%), Positives = 259/520 (49%), Gaps = 112/520 (21%)
Query: 18 IAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTA 77
+ GI+ +Y ++L +G+WA + KN E+ ++AGRS+ VG TL ATW GG G A
Sbjct: 1 LIGIILYYLLILGIGLWASRRVKN--SEDFLVAGRSLPLPVGTFTLFATWFGGETILGAA 58
Query: 78 ESLFSTGLLW-CQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLP 136
E+ + GL Q P GY+L L+ G L FAKPMR G +T+ D F++ YGRR+ LL +P
Sbjct: 59 ETFYEEGLGGVAQDPFGYALCLILGGLFFAKPMRRMGLLTLGDFFRQRYGRRVEVLLSIP 118
Query: 137 ALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGV 196
A+ + ++++ L +LG +
Sbjct: 119 AVPSYLGWVAAQLVALG------------------------------------------L 136
Query: 197 SLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQ-------LIFIVFGLS---- 245
L VILG+ L + IS + YT+ GG++SV+YTDV+Q L+ +V +
Sbjct: 137 VLSVILGLPVTLGILISAAIVLIYTLFGGMWSVAYTDVVQLIVIFIGLLLLVPFVLTNPG 196
Query: 246 --------------------------------------------YFQRILSLKSSTDAVN 261
FQR+LS KS A
Sbjct: 197 GVDASAAAAGKLRFFPWLGTKPSDWLIWIDAWLTLGLGSIPQQDVFQRVLSAKSEKTAQR 256
Query: 262 VSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVT 321
+SL++ IP +IG+ A +D + ++ +LP++L+YLTP WV
Sbjct: 257 LSLLAGFGYLLFAIPPLLIGLAAASIDPDLTSYGLE----DDAQLILPILLQYLTPLWVQ 312
Query: 322 FFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISC 381
LGA+ +++MS+ADS +L S+F+ NIY + FRPKAS+ EL+WV+R+S++ I+
Sbjct: 313 VLFLGALLSAIMSTADSALLAPSSVFSENIY-KPFRPKASDRELLWVMRISVVVFGAIAT 371
Query: 382 SIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRITGGEP 441
+AL+ SIY L + SD+ V LF L+ ++ N+YG L+++++G++LR+ GGE
Sbjct: 372 LLALTVESIYGLVELASDLTLVGLFVPLLAGLYWKRA-NTYGALAAIIVGLVLRLLGGEL 430
Query: 442 NLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLIS 481
LGLP P Q Q FPF T+AM++ + L +S
Sbjct: 431 LLGLPGYDIPP------QLQGFPFSTLAMVIGSLLPLAVS 464
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 136 bits (345), Expect = 4e-35
Identities = 108/461 (23%), Positives = 201/461 (43%), Gaps = 51/461 (11%)
Query: 18 IAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTA 77
+ ++ + I+L +G+++ K K+ E+ LAGRS+G V LTL AT F G A
Sbjct: 3 LIIVIVYLLILLGIGLYSRKKVKS--SEDYFLAGRSLGPFVLALTLAATNISAGSFVGVA 60
Query: 78 ESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLD-PFQKTYGRRIGGLLFLP 136
++ G+ +G +L L+ AL FA +R G T+ + ++ Y + + L +
Sbjct: 61 GLAYTYGISAGWYVIGAALGLLLLALFFAPRLRRLGVKTIPETLLERYYSKGVRILSAII 120
Query: 137 ALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSL---------GKQAKAS 187
++ + YL++ L G + L LLG + +++ ++ G +A A
Sbjct: 121 IIIFLIGYLAAQLIGGG-------IILSTLLGIPYWTGAIILAVIVILYTVFGGLRAVA- 172
Query: 188 HYQVD-------LTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFI 240
D L GV L +S +S + A + L ++ +
Sbjct: 173 --WTDVIQGVLMLIGVILLAFFALSKVGGGGLSALAAALPALLLSLGPGGGPGWGTILGL 230
Query: 241 VFGLS--------YFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKI 292
QR L+ K A L++ I AA+IG+ A+ +
Sbjct: 231 FLLGGFGVLANPQIVQRFLAAKDEKTARRGLLLAGLLILLIGFLAALIGLAARALF---- 286
Query: 293 PGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIY 352
P + LP +++ L P + L + A++MS+ADS++L + ++FTR+IY
Sbjct: 287 -----PDLEGNPDLALPTLIQELLPPGLAGLVLAGLLAAIMSTADSLLLAASTLFTRDIY 341
Query: 353 HQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLV 412
+ PKAS+ +L+ V R++ + V++ +AL SI L + + ++ LFP L+L
Sbjct: 342 KRLINPKASDKKLLRVGRIATVVVGVLALLLALFPPSIILLLSLAAGLLAAALFPPLLLG 401
Query: 413 VHGANHVNSYGCLSSVVIG----ILLRITGGEPNLGLPALI 449
+ G ++S+++G ++ + G G+ I
Sbjct: 402 LFWKR-ATKAGAIASLIVGLIVTLVWLLLGLASPFGIDPAI 441
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related
proteins; solute binding domain. Escherichia coli PutP
catalyzes the Na+-coupled uptake of proline with a
stoichiometry of 1:1. The putP gene is part of the put
operon; this operon in addition encodes a proline
dehydrogenase, allowing the use of proline as a source
of nitrogen and/or carbon. This subfamily also includes
the Bacillus subtilis Na+/proline cotransporter (OpuE)
which has an osmoprotective instead of catabolic role.
Expression of the opuE gene is under osmotic control and
different sigma factors contribute to its regulation; it
is also a putative CcpA-activated gene. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 464
Score = 99.5 bits (249), Expect = 2e-22
Identities = 95/439 (21%), Positives = 168/439 (38%), Gaps = 112/439 (25%)
Query: 18 IAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTA 77
+ + + ++L +GI++ K K + L GRS+G V L+ A+ G G
Sbjct: 1 LITFIVYLLLMLGIGIYSYRKTKTL--SDYFLGGRSLGPWVTALSAGASDMSGWLLLGLP 58
Query: 78 ESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDA----GYITMLDPFQKTYGRRIGGLL 133
+ +++GL +G L L AK +R IT+ D + + + L
Sbjct: 59 GAAYASGLSAIWIAIGLILGTYLNWLFVAKRLRRYTEKNDSITLPDYLENRFRDKSKLLR 118
Query: 134 FLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDL 193
L AL+ L+F +Y ++ L + GK
Sbjct: 119 ILSALI-------------------ILIFF------TIYAAAQLVAGGK----------- 142
Query: 194 TGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQ----------------- 236
+ + GI + I + VAYT GG +VS+TD Q
Sbjct: 143 ---LFESLFGIDYSTGLLIGAVVVVAYTFLGGFLAVSWTDFFQGLLMLLALVLLPIVALA 199
Query: 237 -------------------------------LIFIV----FGLSYF------QRILSLKS 255
L+ I+ +GL YF R +++K
Sbjct: 200 ALGGLSGLVTALAAIDPGLLSPFGGGLGLGGLLAIISLLAWGLGYFGQPHILVRFMAIKD 259
Query: 256 STDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYL 315
+ I+ ++ A ++G+L + + + V P++ + L
Sbjct: 260 PKEIKKARRIAMVWMILFLLGAVLVGLLGR--------ALLPDLLLFDPELVFPVLAQEL 311
Query: 316 TPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILA 375
P W+ L A+ A++MS+ADS +L S T ++Y R +AS+ EL+WV RL++L
Sbjct: 312 FPPWLAGILLAAILAAIMSTADSQLLVCSSALTEDLYKAFLRKEASDKELVWVSRLAVLV 371
Query: 376 ASVISCSIALSG-ASIYYL 393
++I+ IAL+ +S++ L
Sbjct: 372 IALIALIIALNPPSSVFDL 390
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and
metabolism / General function prediction only].
Length = 493
Score = 92.7 bits (231), Expect = 5e-20
Identities = 91/403 (22%), Positives = 160/403 (39%), Gaps = 37/403 (9%)
Query: 21 ILTFYSI-VLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAES 79
I Y I +L++G++A K K+ E+ L GRS+G V L+ A+ G F G
Sbjct: 8 IFLIYLILMLLIGLYAYRKTKSL--EDYFLGGRSLGPFVYALSAAASDTSGWTFLGLPGL 65
Query: 80 LFSTGLLWCQAPVGYSLTLVAGALIFAKPMR----DAGYITMLDPFQKTYGRRIGGLLF- 134
+++GL +G + L+FA +R G T+ D + +G +I +L
Sbjct: 66 AYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSA 125
Query: 135 LPALLGDMLYLSSVLSSLGK--------QAKASLLFLPALLGDMLYLSSVLSSLGKQAKA 186
L ++ + Y++ L + G +L ++ LY + L L
Sbjct: 126 LIIIVFFIPYIALQLVAGGLLLSLLFGISYVTGILIGALIV--ALY--TFLGGLRAVVWT 181
Query: 187 SHYQ--------VDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLI 238
Q + + + L + G + +V S G S Y L
Sbjct: 182 DFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAW 241
Query: 239 FIVFGLSYF-----QRILSLKSSTDAVNVS-LISATACFFIVIPAAIIGVLAKFVDWSKI 292
+F + R ++ KS + L + ++ A ++G+L
Sbjct: 242 GTLFLGYFGQPHILPRFMAAKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGI---AYFP 298
Query: 293 PGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIY 352
D + V P ++ L P W+ L A+ A+VMS+A S +L + S TR+IY
Sbjct: 299 LLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAAILAAVMSTASSQLLVASSAITRDIY 358
Query: 353 HQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSV 395
+ R ASE EL+ + R+ +L ++++ +AL S V
Sbjct: 359 KRFLRKNASEKELVRIGRVVVLVIALLALLLALLPPSSILGLV 401
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family. The Solute:Sodium
Symporter (SSS) Family (TC 2.A.21) Members of the SSS
family catalyze solute:Na+ symport. The solutes
transported may be sugars, amino acids, nucleosides,
inositols, vitamins, urea or anions, depending on the
system. Members of the SSS family have been identified
in bacteria, archaea and animals, and all functionally
well characterized members catalyze solute uptake via
Na+ symport. Proteins of the SSS generally share a core
of 13 TMSs, but different members of the family may have
different numbers of TMSs. A 13 TMS topology with a
periplasmic N-terminus and a cytoplasmic C-terminus has
been experimentally determined for the proline:Na+
symporter, PutP, of E. coli [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 407
Score = 80.8 bits (200), Expect = 2e-16
Identities = 97/421 (23%), Positives = 170/421 (40%), Gaps = 53/421 (12%)
Query: 50 AGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPM 109
AGRS+G V +L A++ S F G ++++ G +G + L+ +F
Sbjct: 1 AGRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIF 60
Query: 110 RDAGYITMLDPFQKTYGRRIG-GLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLG 168
+ G TM + +K +G+RI GL L +L LY+S L S L + + G
Sbjct: 61 INNGAYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGA-------LLIELITG 113
Query: 169 DMLYLSSVLSSLGKQA-------KASHYQVDLTGVSLKVILGISDYLSVTI--------- 212
LYLS +L KA + + + ++ I + +
Sbjct: 114 LDLYLSLLLLGAITILYTVFGGLKAVVWTDTI-----QAVIMILGTFILPVFAFSEVGGL 168
Query: 213 STMFAVAYTIS------GGLYSVSY---TDVLQLIFIVFGL-----------SYFQRILS 252
T A + LY T L VFGL QR L+
Sbjct: 169 GTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTNQVIVQRCLA 228
Query: 253 LKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVL 312
KS+ A LIS + A + G++A+ + P + S+ PL++
Sbjct: 229 AKSAKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVN-QNSDQAYPLLV 287
Query: 313 RYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKAS-EYELMWVLRL 371
+ L P + L A+ A+VMS+ S + + ++FT ++Y + RP AS E +++ R+
Sbjct: 288 QELMPPGLAGLFLAAILAAVMSTLSSQLNSASTVFTMDLYKKIIRPNASGEKKIVMRGRI 347
Query: 372 SILAASVISCSIALS-GASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVI 430
++L A+VI+ +A + G + + P +L + +N+ G L+ ++
Sbjct: 348 AVLVAAVIAGFVAAAQGGQVLQYVQEAFGGLGAPFLPVFLLGIF-WKRMNAKGALAGMIA 406
Query: 431 G 431
G
Sbjct: 407 G 407
>gnl|CDD|109527 pfam00474, SSF, Sodium:solute symporter family. Membership of this
family is supported by a significant blast score.
Length = 406
Score = 65.1 bits (159), Expect = 3e-11
Identities = 90/417 (21%), Positives = 156/417 (37%), Gaps = 47/417 (11%)
Query: 49 LAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALI---- 104
LAGRS+ V L+L A++ + F G A + ++GL Y++ + G +
Sbjct: 3 LAGRSMTGFVNGLSLAASYMSAASFVGLAGAGAASGLAG----GLYAIGALVGVWLLLWL 58
Query: 105 FAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLSSLGKQAKASLLFLP 164
FA +R+ G TM D +K +G + +L + L +LY + +S Q +
Sbjct: 59 FAPRLRNLGAYTMPDYLRKRFGGKR--ILVYLSALSLLLYFFTYMSV---QIVGGARLIE 113
Query: 165 ALLGDMLYLSSVLSSLGKQA--------KASHY----QVDLTGVSLKVILGISDY----L 208
LG + Y ++VL A A + Q L +++ I +
Sbjct: 114 LALG-LNYYTAVLLLGALTAIYTFFGGFLAVSWTDTIQAVLMLFGTIILMIIVFHEVGGY 172
Query: 209 SVTISTMFAVAYTISGGLYSVSYTDVLQLIFIV-----FGLSYF------QRILSLKSST 257
S + + + + L QR L+ K +
Sbjct: 173 SSAVEKYMTADPNGVDLYTPDGLHILRDPLTGLSLWPGLVLGTTGLPHILQRCLAAKDAK 232
Query: 258 DAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTP 317
++ T F IV+P I L P + SN P + L P
Sbjct: 233 CIRC-GVLILTPMFIIVMPGMISRGLFAIALAGANPRACGT-VVGCSNIAYPTLAVKLGP 290
Query: 318 GWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRP-KASEYELMWVLRLSILAA 376
+ L + A++MS+ S +L S S FT ++Y R A+E EL+ R+ +L
Sbjct: 291 PGLAGIMLAVMLAAIMSTLTSQLLSSSSAFTHDLYKNIRRKASATEKELVGRSRIIVLVV 350
Query: 377 SVISCSIALSGAS--IYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIG 431
++ +A+ A I +L + + P ++L + VN G L ++IG
Sbjct: 351 ISLAILLAVQPAQMGIAFLVQLAFAGLGSAFLPVILLAIF-WKRVNEQGALWGMIIG 406
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters, SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 481
Score = 59.9 bits (146), Expect = 1e-09
Identities = 91/440 (20%), Positives = 160/440 (36%), Gaps = 124/440 (28%)
Query: 27 IVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLL 86
+LV G++ G KN +E+ L GRS+ L+++AT F + G+
Sbjct: 12 GILVYGLYKGRGNKN--QEDYFLGGRSMPWWPIGLSVMATQASAITFLSAPGQAYLDGMR 69
Query: 87 WCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRR---IGGLLFLPALLGDML 143
+ Q G L ++ + F T + ++ +G + + LFL
Sbjct: 70 FVQFYFGLPLAMIFLCITFVPIFYRLKVYTAYEYLERRFGLKTRLLTSFLFL-------- 121
Query: 144 YLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILG 203
+S L++ +++ PA++ L ILG
Sbjct: 122 -ISRGLAT------GVMIYAPAII------------------------------LSTILG 144
Query: 204 ISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLI------FIVFG-------------- 243
S + ++ + + + YT+ GG+ +V +TDV+Q++ FI G
Sbjct: 145 WSLWYTILLIGVIVIIYTVLGGIKAVIWTDVIQMVIIFAGLFIALGFLLKGLPVGFTDAL 204
Query: 244 -----------------------------------LSYF-------QRILSLKSSTDAVN 261
LSYF QR L+ KS +A
Sbjct: 205 LLAGKSGKLNALDFSFDLSETYTFWSGLIGGFFLYLSYFGTDQSQVQRYLTAKSIGEARK 264
Query: 262 VSLISATACFFIVIPAAIIGVL-AKFVDWSKIPGYDKP---------FDMTESNSVLP-L 310
L++ F + +IGVL F + P P + ++N +
Sbjct: 265 SLLMNGLLKFPMQFFILLIGVLLFVFYQFKPFPLSFNPAEVQRLDPNAETNDTNYIFLRF 324
Query: 311 VLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLR 370
VL YL PG V + A+ A+ MSS DS + ++ +IY + F+ +AS+ + V R
Sbjct: 325 VLNYLPPGLVGLL-IAAIFAAAMSSIDSALNSLATVTVIDIYKRFFKKEASDEHYLKVSR 383
Query: 371 LSILAASVISCSIALSGASI 390
L + +++ AL A
Sbjct: 384 LLTVFWGLLAIVFALFFAGS 403
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 58.4 bits (142), Expect = 5e-09
Identities = 75/432 (17%), Positives = 146/432 (33%), Gaps = 115/432 (26%)
Query: 21 ILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSI-GKIVGVLTLIATWGGGSYFTGTAES 79
I ++ ++L +G++ +K+ + + L GR++ + G L++ AT F A
Sbjct: 6 IALYFLLMLGIGLYF-SKRASKSTSDFFLGGRNLPWWLAG-LSMFATTFSADTFVAVAGI 63
Query: 80 LFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALL 139
++ GL+ +++ + GA FA R +T + ++ YG R G L
Sbjct: 64 AYTYGLVGNWIWWLWAVAGLLGAFFFAPRWRRLRVVTDGELPEERYGGRFGAPL------ 117
Query: 140 GDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLK 199
+Q A L + +G +L +
Sbjct: 118 --------------RQFYAWYFALLSNVGIGAWLYLAAIKV-----------------AA 146
Query: 200 VILGISDYLSVTISTMFAVAYTISGGLYSVSYTD-------------------------- 233
V L++ I + + Y++ GGL++V TD
Sbjct: 147 VFGPWDITLTILILGLITLIYSVIGGLWAVVVTDVVQFVILMAASIAVAVLALNAVGGPG 206
Query: 234 ---------------------------VLQLIFIVFGLSYF-------QRILSLKSSTDA 259
L F + S QR LS KS A
Sbjct: 207 GLWSQLPEGFFDFFLSLDGFTGFGALFFFILWFGWYAGSASGGGWYDAQRYLSAKSEKAA 266
Query: 260 -----VNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLR- 313
+ +L +++ A + + D + + + + P +++
Sbjct: 267 KKAALLFAALYLVRPLPWMLPALAALVLYPDLADPAA--------ALIDFEAAYPAMIKE 318
Query: 314 YLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSI 373
L G + L + A+ MS+ + + + +IY + +P ASE EL+ V RL+
Sbjct: 319 LLPAGLLGLV-LAGLFAATMSTVSTHLNWGAAYLVNDIYKRFIKPDASEKELLRVGRLAT 377
Query: 374 LAASVISCSIAL 385
+ ++S +AL
Sbjct: 378 VLFGLLSIVVAL 389
>gnl|CDD|233735 TIGR02121, Na_Pro_sym, sodium/proline symporter. This family
consists of the sodium/proline symporter (proline
permease) from a number of Gram-negative and
Gram-positive bacteria and from the archaeal genus
Methanosarcina. Using the related pantothenate permease
as an outgroup, candidate sequences from Bifidobacterium
longum and several from archaea are found to be outside
the clade defined by known proline permeases. These
sequences, scoring between 570 and -40, define the range
between trusted and noise cutoff scores [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 487
Score = 57.8 bits (140), Expect = 6e-09
Identities = 87/419 (20%), Positives = 156/419 (37%), Gaps = 107/419 (25%)
Query: 27 IVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLL 86
I+L++G +A K N + +L GRS+G V L+ A+ G G +L+ TGL
Sbjct: 13 IMLLIGFYAYKKTTNL--SDYVLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLS 70
Query: 87 WCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALLGDMLYLS 146
+G ++ A +R Y + LP +
Sbjct: 71 ELWIAIGLTIGAYINWKFVAPRLR-------------VYTEAAHNSITLPDFFENRFNDK 117
Query: 147 S----VLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVIL 202
S ++S+L L+F +Y SS L + GK +++
Sbjct: 118 SRLLRIISAL-----IILVFF------TIYTSSGLVAGGKLFEST--------------F 152
Query: 203 GISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVF-------------------- 242
G+ + I + V YT GG +VS+TD +Q + + F
Sbjct: 153 GLDYKTGLLIGALIIVIYTFFGGFLAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETL 212
Query: 243 ----------------------------GLSYF------QRILSLKSSTDAVNVSLISAT 268
GL YF R ++++S + I +
Sbjct: 213 SAVAAINPHLLDMFKGASVIAIISLLAWGLGYFGQPHIIVRFMAIRSHKELPKARRIGMS 272
Query: 269 ACFFIVIPAAIIGV--LAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLG 326
++ A +G+ +A F + D+ ++ ++ + L W+ L
Sbjct: 273 WMILSLLGAIAVGLTGIAYFNKNPHVELVDR-------ETIFIVLSQILFHPWIAGILLA 325
Query: 327 AVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIAL 385
A+ A++MS+ S +L S S T + Y F+ +AS+ EL+ V RLS+L ++I+ +A+
Sbjct: 326 AILAAIMSTISSQLLVSSSALTEDFYKAFFKREASQKELVMVGRLSVLVIAIIAIILAM 384
>gnl|CDD|131174 TIGR02119, panF, sodium/pantothenate symporter. Pantothenate
(vitamin B5) is a precursor of coenzyme A and is made
from aspartate and 2-oxoisovalerate in most bacteria
with completed genome sequences. However, some pathogens
must import pantothenate. This model describes PanF, a
sodium/pantothenate symporter, from a larger family of
Sodium/substrate symporters (pfam00474). Several species
that have this transporter appear to lack all enzymes of
pantothenate biosynthesis, namely Haemophilus
influenzae, Pasteurella multocida, Fusobacterium
nucleatum, and Borrelia burgdorferi [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pantothenate
and coenzyme A, Transport and binding proteins, Other].
Length = 471
Score = 56.7 bits (137), Expect = 2e-08
Identities = 96/470 (20%), Positives = 180/470 (38%), Gaps = 93/470 (19%)
Query: 16 YGIAGILTFYSIVLVVGIWAGTKQK--NHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYF 73
+ ++ + V ++ I+A + + + E L GRS+G V +TL+AT+G S F
Sbjct: 2 EVVIPLIIYLVTVFLIAIYASKRVQSTDSFLNEYFLGGRSMGGFVLAMTLVATYGSASSF 61
Query: 74 TGTAESLFSTGLLWC-----QAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRR 128
G ++ GL W Q P GY L FA R IT+ D + Y +
Sbjct: 62 IGGPGIAYNYGLGWVLLAMIQVPTGY-FVLGVLGKKFAIISRKYNAITINDVLKARYNNK 120
Query: 129 ----------------------IGGLLFLPALLGDMLYLSSVL----------SSLGKQA 156
IGG + +L G + YL+++ + G +A
Sbjct: 121 FLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-LSYLTALFIFSSSVLIYTTFGGFRA 179
Query: 157 KA---SLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTIS 213
A ++ + G + L +V+ + G K L + +I +T
Sbjct: 180 VALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIME---KLKDIDPNLITPFGGDGGLTKP 236
Query: 214 TMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFI 273
+ + + G+ + T V R +S K S +I I
Sbjct: 237 FVASFWILVGIGVIGLPQTAV--------------RCMSYKDSKAMHRAMIIGTIVVGII 282
Query: 274 VIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVM 333
++ + GVL + V IP D+T + V+PL+ + P + L A A++M
Sbjct: 283 MLGMHLAGVLGRAV----IP------DLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIM 332
Query: 334 SSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYL 393
S+ +S++L S S +++Y +A E ++ + C + G +
Sbjct: 333 STVNSLLLQSSSTIIKDLYLNYIPKEAKESKI----------KKISMCITLIIGLLVIIA 382
Query: 394 SVVCSD-VVYVTLFP----------QLVLVVHGANHVNSYGCLSSVVIGI 432
++ D ++++ LF +VL ++ N+ G L+S+++G+
Sbjct: 383 AIKPPDLIIWLNLFAFGGLEAAFIWPIVLGLYW-KRANATGALASMIVGV 431
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism].
Length = 473
Score = 55.9 bits (135), Expect = 2e-08
Identities = 94/481 (19%), Positives = 173/481 (35%), Gaps = 110/481 (22%)
Query: 18 IAGILTFYSIVLVVGIWAGTK-QKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGT 76
I ++ + +V + I+A K K E L RS+G IV +T AT+ S F G
Sbjct: 4 ILPLIGYLVVVFGIAIYAYRKRSKGSFLNEYYLGNRSMGGIVLAMTFTATYISASSFIGG 63
Query: 77 AESLFSTGLLWC-----QAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGG 131
+ + GL W Q P + L L FA R+ +T+ D Y R
Sbjct: 64 PGAAYKYGLGWVLLAMIQVPTVW-LALGVLGKKFAILAREYNALTINDLLFARYQSR--- 119
Query: 132 LLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQV 191
L+SL SL+F + ++ +
Sbjct: 120 -------------FLVWLASL------SLIFF-----FVGAMTVQFIGGARL-------- 147
Query: 192 DLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQ-LIFIVFGLSYFQRI 250
L+ LGI + I + YT GG +V TD +Q L+ ++ + F +
Sbjct: 148 ------LETALGIDYTTGLLIFAVSVAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGV 201
Query: 251 L------------------SLKSSTDAVNVSLISATACFFIVIPAAIIGV---------- 282
+ L + A ++ A F+I++ ++G+
Sbjct: 202 IYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAF 261
Query: 283 -------------------------LAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTP 317
LA + + IP D+T + V+P + + P
Sbjct: 262 KDSKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIP------DLTVVDLVIPTLALKVLP 315
Query: 318 GWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAAS 377
+ L A A++MS+ +S +L S S +++Y +E ++ + ++ L
Sbjct: 316 PFAAGIFLAAPMAAIMSTINSQLLQSSSTLIKDLYLNVRDKLKNERKIKRISMIATLIFG 375
Query: 378 VISCSIALSGAS-IYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLRI 436
+ AL+ I +L++ + LVL ++ N+ G L+S+++G++L +
Sbjct: 376 ALLLIAALNPPEMIIWLNLFAFGGLEAVFLWPLVLGLY-WEKANAAGALASMIVGLVLYV 434
Query: 437 T 437
Sbjct: 435 L 435
>gnl|CDD|212058 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporter SGLT5 and
related proteins; solute-binding domain. Human SGLT5 is
a glucose transporter, which also transports galactose.
It is encoded by the SLC5A10 gene, and is exclusively
expressed in the renal cortex. This subgroup belongs to
the solute carrier 5 (SLC5) transporter family.
Length = 604
Score = 52.6 bits (126), Expect = 3e-07
Identities = 96/419 (22%), Positives = 162/419 (38%), Gaps = 65/419 (15%)
Query: 15 VYGIAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFT 74
V I I ++++ + VGIW+ + + LAGR + +L A+ G F
Sbjct: 2 VADIIVIGVYFALNVAVGIWSSCRVSRNTVSGYFLAGRDMAWWPIGASLFASSEGSGLFI 61
Query: 75 GTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYG-RRIGGLL 133
G A + + G+ + L+A A +F +G +TM + Q+ +G RI +
Sbjct: 62 GLAGTGAAGGIAVAGFEWNATYALLALAWVFVPVYISSGIVTMPEYLQRRFGGERI--RM 119
Query: 134 FLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLS-------SLGKQAKA 186
+L L L SV + + + LF+ LG LYLS+VL ++ A
Sbjct: 120 YLSVLS----LLLSVFTKISTDLYSGALFVQVCLGWNLYLSTVLMLVVTALYTIAGGLAA 175
Query: 187 SHYQVDLTGVSL---KVILGISDYLSVTISTMFAVAY-------TISGGLYSVSYTDVLQ 236
Y L + + VIL I + + + AY I + D +
Sbjct: 176 VIYTDALQTLIMVIGAVILTIKAFNQIGGYSNLEEAYLQAVPSKIIPNTTCHLPRADAMH 235
Query: 237 LIF-----------IVFGLSYF------------QRILSLKSSTDAVNVSLISA----TA 269
L + FGL+ QR LS +S + A S++++
Sbjct: 236 LFRDPVTGDLPWTGMTFGLTIMATWYWCTDQVIVQRSLSARSLSHAKGGSILASYLKMLP 295
Query: 270 CFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTE--------SNSVLPLVLRYLTPGWVT 321
I++P I L + P + SN P ++ L P +
Sbjct: 296 MGLIIMPGMISRAL-----FPDDVACVDPEECLRVCGAEVGCSNIAYPKLVMELMPSGLR 350
Query: 322 FFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVIS 380
+ + A++MSS S+ S ++FT +I+ + RP ASE EL+ V RL + +S
Sbjct: 351 GLMIAVMMAALMSSLTSIFNSSSTLFTMDIWRR-LRPGASERELLLVGRLVTVILVGVS 408
>gnl|CDD|212049 cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 454
Score = 50.3 bits (121), Expect = 2e-06
Identities = 78/419 (18%), Positives = 158/419 (37%), Gaps = 110/419 (26%)
Query: 21 ILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESL 80
I +++ ++ +G W + K E+ ++AGR +G + + T+ A GG+ G
Sbjct: 6 IALYFAAMIAIGWWGMRRAKTS--EDYLVAGRRLGPGLYLGTMAAVVLGGASTIGGVGLG 63
Query: 81 FSTGL--LWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPAL 138
+ G+ +W +G L ++A L+ AK + T+ + + YG
Sbjct: 64 YQYGISGMWLVFMIG--LGIIALGLLLAKRIARLKVYTVSEVLELRYGPS---------- 111
Query: 139 LGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSL 198
+ V+S+L ++ L M+ ++ V++ G
Sbjct: 112 -------ARVISAL-------VMLAYTL---MVAVTQVIA---------------IGTVF 139
Query: 199 KVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL-------------- 244
V+ G+ LS+ + V Y++ GG++S++ TD++Q + G+
Sbjct: 140 SVLFGLPRTLSILVGGGIVVLYSVLGGMWSITLTDIIQFVVKTIGIFLLLLPLALSKAGG 199
Query: 245 ----------SYF----------------------------QRILSLKSSTDAVNVSLIS 266
SYF QR+ + +S A + +
Sbjct: 200 LSGLQAKLPASYFDLTSIGWDTIFTYFLLYFFGILIGQDIWQRVFTARSEKVARWGGVAA 259
Query: 267 ATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLG 326
C + A+IG+ A+ + +P P ++ + + + P + L
Sbjct: 260 GLYCVLYGLAGALIGMAARVL----LPDLANP------DNAFATMAQEVLPVGLRGLVLA 309
Query: 327 AVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIAL 385
A A++MS+A +L S ++ T ++Y + SE + + RL L V+ IA+
Sbjct: 310 AALAAMMSTASGALLASSTVLTNDVYPRFRAKNESERSEVRLSRLFTLLIGVVVIVIAV 368
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 48.3 bits (115), Expect = 8e-06
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 50/231 (21%)
Query: 18 IAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTA 77
I+ I+ ++ +VL VG+WA + LAGRS+ +L A+ G +F G A
Sbjct: 3 ISVIVIYFVVVLAVGVWAMVRTNRGTVGGFFLAGRSMVWWPIGASLFASNIGSGHFVGLA 62
Query: 78 ESLFSTGLLWCQAPVGYS----LTLVAGALIFAKPMRDAGYITMLDPFQKTYG-RRIGGL 132
+ + G+ A G+ + +V +F AG +TM + +K +G +RI
Sbjct: 63 GTGAAGGI----AIGGFEWNALVVVVILGWLFVPIYIKAGVVTMPEYLRKRFGGQRI--- 115
Query: 133 LFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVD 192
+YLS +L +LY+ + +S+ +
Sbjct: 116 ---------QIYLS-------------------VLSLLLYVFTKISA----------DMF 137
Query: 193 LTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFG 243
+ + LG++ YL++ I YT++GGL +V YTD LQ I ++ G
Sbjct: 138 SGAIFINQALGLNIYLAIVILLAITALYTVTGGLAAVIYTDTLQTIIMLVG 188
>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 46.9 bits (112), Expect = 2e-05
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 248 QRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSV 307
QR L+ K + A LI A FI I + G++A V ++ ++
Sbjct: 258 QRALAAKDLSAAKRTPLIGAFPKMFIPILVILPGLIA-LVLVPELGASGLDYNQ-----A 311
Query: 308 LPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMW 367
LP ++ P + GL A+ A+ MS + ++FT +IY R AS+ +
Sbjct: 312 LPYLMAKYLPPGLLGLGLTALLAAFMSGMAGNVSAFNTVFTYDIYQTYIRKDASDKHYLK 371
Query: 368 VLRLSILAASVISCS---IALSGASIY 391
V R++ + +IS IA+S +I
Sbjct: 372 VGRIATVVGVLISIGTAYIAMSFNNIM 398
Score = 43.0 bits (102), Expect = 3e-04
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 198 LKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLS 245
L+V+LG + S+ +S +AYT GGL S Y +VLQ IV GL
Sbjct: 140 LQVLLGWPFWASILLSAAIVLAYTTLGGLTSAIYNEVLQFFLIVAGLL 187
>gnl|CDD|212057 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporter SGLT4 and
related proteins; solute-binding domain. Human SGLT4
(hSGLT4) has been reported to be a low-affinity glucose
transporter with unusual sugar selectivity: it
transports D-mannose but not galactose or
3-O-methyl-D-glucoside. It is encoded by the SLC5A9 gene
and is expressed in intestine, kidney, liver, brain,
lung, trachea, uterus, and pancreas. hSLGT4 is predicted
to contain 14 membrane-spanning regions. This subgroup
belongs to the solute carrier 5 (SLC5 )transporter
family.
Length = 605
Score = 46.8 bits (111), Expect = 2e-05
Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 42/227 (18%)
Query: 18 IAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTA 77
IA ++ ++ VL VGIW+ + LAGRS+ +L+++ G F G A
Sbjct: 2 IAVVVVYFVFVLAVGIWSSIRASRGTVGGYFLAGRSMTWWPIGASLMSSNVGSGLFIGLA 61
Query: 78 ESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYG-RRIGGLLFLP 136
+ + GL + L+A IF AG +TM + +K +G +RI +
Sbjct: 62 GTGAAGGLAVGGFEWNATWVLLALGWIFVPVYIAAGVVTMPEYLKKRFGGQRIRIYM--- 118
Query: 137 ALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGV 196
++L +LY + + + + LF+ LG LYLS+V+
Sbjct: 119 SVLSLILY---IFTKISTDIFSGALFIQVSLGWNLYLSTVI------------------- 156
Query: 197 SLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFG 243
L+VT YTI+GGL +V YTD LQ + +V G
Sbjct: 157 ----------LLAVT------AVYTIAGGLTAVIYTDALQTVIMVIG 187
Score = 41.8 bits (98), Expect = 8e-04
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 304 SNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEY 363
SN P ++ L P + + + A++MSS S+ S ++FT +++ Q R ASE
Sbjct: 330 SNIAYPKLVVELMPVGLRGLMIAVIMAALMSSLTSIFNSSSTLFTIDVW-QRIRRNASEQ 388
Query: 364 ELMWVLRLSILAASVIS 380
ELM V R+ IL VIS
Sbjct: 389 ELMVVGRVFILILVVIS 405
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional.
Length = 483
Score = 45.6 bits (109), Expect = 5e-05
Identities = 57/231 (24%), Positives = 82/231 (35%), Gaps = 52/231 (22%)
Query: 21 ILTFYSIVLVVGIWAGTK-QKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAES 79
++ + +V + ++A K Q E L RS+G V +TLIAT+ S F G +
Sbjct: 9 LVIYLVLVFGISVYAYRKRQAGDFLNEYFLGNRSMGGFVLAMTLIATYISASSFIGGPGA 68
Query: 80 LFSTGLLWC-----QAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLF 134
+ GL W Q P + L+L FA R +T+ D + Y R
Sbjct: 69 AYKYGLGWVLLAMIQVPTVW-LSLGILGKKFAILARKYNAVTLNDMLRARYQSR------ 121
Query: 135 LPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLT 194
L L+SL SLL M
Sbjct: 122 ----------LLVWLASL------SLLV--FFFAAMT-------------------AQFI 144
Query: 195 GVS--LKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFG 243
G + L+ GIS + I + YT GG +V TD LQ I ++ G
Sbjct: 145 GGARLLETATGISYETGLLIFGITVALYTAFGGFRAVVLTDALQGIVMLVG 195
Score = 37.2 bits (87), Expect = 0.021
Identities = 46/212 (21%), Positives = 93/212 (43%), Gaps = 34/212 (16%)
Query: 239 FIVFGLSYF-QRILSLKSSTDAVNVSLISATA-CFFIVIPAAIIGVLAKFVDWSKIPGYD 296
F V GL + R +S K S A++ +I T F++ + G L + V +P
Sbjct: 248 FGVIGLPHTAVRCMSYKDSK-ALHRGIIIGTIVVGFLMFGMHLAGALGRAV----LP--- 299
Query: 297 KPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSF 356
D+T + V+P ++ + P + L A A++MS+ DS +L S S +++Y +
Sbjct: 300 ---DLTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQSSSTIIKDLY-LNI 355
Query: 357 RPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVY-----------VTL 405
RP E + R+S++ ++ G + ++ D++
Sbjct: 356 RPDQIANEKK-LKRISLIITLIL-------GLLVLLAALKPPDMIIWLNLFAFGGLEAVF 407
Query: 406 FPQLVLVVHGANHVNSYGCLSSVVIGILLRIT 437
+VL ++ N+ G L+S+++G++ +
Sbjct: 408 LWPIVLGLY-WERANATGALASMIVGLVSYLL 438
>gnl|CDD|212039 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and
related proteins; solute binding domain. This subfamily
includes the solute-binding domain of SGLT proteins that
cotransport Na+ with various solutes. Its members
include: the human glucose (SGLT1, -2, -4, -5 ),
chiro-inositol (SGLT5), and myo-inositol (SMIT)
cotransporters. It also includes human SGLT3 which has
been characterized as a glucose sensor and not a
transporter. It belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 564
Score = 45.0 bits (107), Expect = 7e-05
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 325 LGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVIS 380
L + A++MSS S+ S ++FT +I+ + RP+ASE ELM V RL +L +S
Sbjct: 354 LAVMLAALMSSLTSIFNSSSTLFTMDIW-KRIRPRASERELMIVGRLFVLVLVGVS 408
Score = 41.5 bits (98), Expect = 0.001
Identities = 62/233 (26%), Positives = 98/233 (42%), Gaps = 54/233 (23%)
Query: 18 IAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTA 77
I I+ ++ +VL VG+W+ + LAGRS+ +L A+ G +F G A
Sbjct: 2 IVVIVLYFVLVLAVGLWSMCRTNRGTVSGYFLAGRSMVWWPVGASLFASNIGSGHFVGLA 61
Query: 78 ESLFSTGLLWCQAPVGY----SLTLVAGALIFAKPMRDAGYITMLDPFQKTYG-RRIGGL 132
+ ++G+ A + L+ IF AG +TM + +K +G +RI
Sbjct: 62 GTGAASGI----AVGAFEWNALFILLLLGWIFVPVYIAAGVVTMPEYLRKRFGGQRI--- 114
Query: 133 LFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVD 192
+YLS +L L LY+ + +S D
Sbjct: 115 ---------RVYLS-------------VLSL------FLYIFTKIS------------AD 134
Query: 193 L-TG-VSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFG 243
L G + ++ LG + YLS+ I YTI+GGL +V YTD LQ + +V G
Sbjct: 135 LFAGAIFIQQALGWNLYLSIIILLAITAVYTITGGLAAVIYTDTLQTVIMVIG 187
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of
Escherichia coli and related proteins; solute binding
domain. PanF catalyzes the Na+-coupled uptake of
extracellular pantothenate for coenzyme A biosynthesis
in cells. This subfamily belongs to the solute carrier 5
(SLC5) transporter family.
Length = 472
Score = 44.5 bits (106), Expect = 9e-05
Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 50/231 (21%)
Query: 21 ILTFYSIVLVVGIWAGTKQKNHGE---EEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTA 77
I+ + I+L +G +A +K EE + GRS+G V +TL+AT+ S F G
Sbjct: 5 IIIYLVILLGIGFYARRSKKRRSGDFLEEYFIGGRSMGGFVLAMTLVATYTSASSFIGGP 64
Query: 78 ESLFSTGLLWC-----QAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGL 132
+ + GL W Q P G+ LTL FA R +T++D + Y +
Sbjct: 65 GAAYKIGLGWVLLAMIQVPTGF-LTLGVLGKKFAIIARKINAVTIIDYLRARYNSK---- 119
Query: 133 LFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVD 192
AL+ VLSSL A ++F +++++++ A+
Sbjct: 120 ----ALV--------VLSSL-----ALIVF---------FIAAMVAQFIGGARL------ 147
Query: 193 LTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFG 243
L+ + G+S + I + + YT GG +V+ TD +Q I ++ G
Sbjct: 148 -----LEAVTGLSYVTGLLIFGLTVILYTTIGGFRAVALTDAIQGIVMIIG 193
Score = 39.9 bits (94), Expect = 0.003
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 31/207 (14%)
Query: 239 FIVFGLSYF-QRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDK 297
F V GL R + K S +I F+++ + GVL + V +P
Sbjct: 245 FGVIGLPQTAVRCMGYKDSKSMHRAMIIGTVVVGFLMLGMHLAGVLGRAV----LP---- 296
Query: 298 PFDMTESNSVLP-LVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSF 356
D+ + V+P L L+ L P F L A++MS+ DS ++ + S +++Y
Sbjct: 297 --DLEVPDKVIPTLALKVLPPWLAGLF-LAGPLAAIMSTVDSQLILASSAIVKDLYLNYK 353
Query: 357 RPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSD-VVYVTLFPQ------- 408
+ E V R+S++ ++ G ++ L++ D +V++ LF
Sbjct: 354 NKEKKTSEKK-VKRISLIITIIL-------GLLVFLLAINPPDLIVWLNLFAFGGLEAAF 405
Query: 409 LVLVVHGA--NHVNSYGCLSSVVIGIL 433
+V G N+ G L+S+V+G++
Sbjct: 406 FWPLVLGLYWKRANATGALASMVVGLV 432
>gnl|CDD|212035 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose
cotransporter (vSGLT) and related proteins; solute
binding domain. vSGLT transports D-galactose,
D-glucose, and alpha-D-fucose, with a sugar specificity
in the order of D-galactose >D-fucose >D-glucose. It
transports one Na+ ion for each sugar molecule, and
appears to function as a monomer. vSGLT has 13
transmembrane helices (TMs): TM-1, an inverted topology
repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered
to conform to the solute carrier 6 family Aquifex
aeolicus LeuT). This subfamily belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 523
Score = 44.6 bits (106), Expect = 1e-04
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 271 FFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSA 330
F +VIP VL + G KP + P +LR L P + A++A
Sbjct: 288 FIVVIPGIAAYVLFSNLLLPAATGVYKP------DQAYPWLLRNL-PTGLKGLVFAALTA 340
Query: 331 SVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIA 384
+++SS S++ ++FT +IY + ASE +L+ V R++ + A VI+ IA
Sbjct: 341 AIVSSLASMLNSISTIFTMDIYKKYINKDASEKQLVNVGRIAAVVAVVIAALIA 394
Score = 39.9 bits (94), Expect = 0.002
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 193 LTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFG 243
L ++++ I GI S+ FA AY+I GGL +V++TDV+Q++F+V G
Sbjct: 136 LGALAIEGITGIPLTYSIIGLAAFAAAYSIYGGLKAVAWTDVIQVVFLVLG 186
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 42.5 bits (101), Expect = 4e-04
Identities = 52/252 (20%), Positives = 91/252 (36%), Gaps = 61/252 (24%)
Query: 193 LTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQ-----------LIFIV 241
L ++L + GI+ Y+ + + + + YT+ GG+ +V +TDV+Q LI I+
Sbjct: 137 LPALALSAVTGINIYIIILLMGIITIIYTVLGGIEAVIWTDVIQGIVLLGGALLCLIIII 196
Query: 242 F----GLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFV-DWSKIPGYD 296
F G I S + S F++V+ I L + D + Y
Sbjct: 197 FKIPGGFGQVFDIASANGKFSLGDFSFSLTEPTFWVVLIGGIFNNLQNYTSDQDVVQRYL 256
Query: 297 KPFDMTESN-SVLPLVLRYLTPGWVTFFGLG----------------------------- 326
E+ S+ L L P W+ FF +G
Sbjct: 257 TTKSEKEARKSLWLNALLSL-PVWLLFFFIGTALYVFYQQHPELLDATINGDAVFPYFIV 315
Query: 327 -------------AVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSI 373
A+ A+ MS+ S + ++ T + Y + +P S+ + + V RL
Sbjct: 316 TQLPAGVAGLVIAAIFAAAMSTLSSSLNSIATVITTDFY-KRLKPGRSDKKYLRVARLIT 374
Query: 374 LAASVISCSIAL 385
L ++ AL
Sbjct: 375 LLVGILGTGGAL 386
>gnl|CDD|185317 PRK15419, PRK15419, proline:sodium symporter PutP; Provisional.
Length = 502
Score = 40.4 bits (94), Expect = 0.002
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 319 WVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASV 378
W+ L A+ A+VMS+ +L S T ++Y R AS+ EL+WV R+ +L ++
Sbjct: 325 WIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLRKHASQKELVWVGRVMVLVVAL 384
Query: 379 ISCSIA 384
++ ++A
Sbjct: 385 VAIALA 390
>gnl|CDD|212056 cd11487, SLC5sbd_SGLT2, Na(+)/glucose cotransporter SGLT2 and
related proteins; solute-binding domain. Human SGLT2
(hSGLT2) is a high-capacity, low-affinity glucose
transporter, that plays an important role in renal
glucose reabsorption. It is encoded by the SLC5A2 gene
and expressed almost exclusively in renal proximal
tubule cells. Mutations in hSGLT2 cause Familial Renal
Glucosuria (FRG), a rare autosomal defect in glucose
transport. hSGLT2 is a major drug target for regulating
blood glucose levels in diabetes. hSGLT2 is predicted to
have 14 membrane-spanning regions. This subgroup belongs
to the solute carrier 5 (SLC5) transporter family.
Length = 583
Score = 39.1 bits (91), Expect = 0.005
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 304 SNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEY 363
SN P ++ L P + L + A++MSS S+ S ++FT +I+ + RP+A +
Sbjct: 339 SNIAYPKLVVKLMPNGLRGLMLAVMLAALMSSLASIFNSSSTLFTMDIWTR-LRPQAGDK 397
Query: 364 ELMWVLRLSILAASVIS 380
EL+ V R+ ++ +S
Sbjct: 398 ELLLVGRVWVVCIVAVS 414
Score = 38.4 bits (89), Expect = 0.008
Identities = 59/234 (25%), Positives = 97/234 (41%), Gaps = 56/234 (23%)
Query: 18 IAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTA 77
I+ I ++ +V+ VG+W+ + LAGRS+ +L A+ G +F G A
Sbjct: 3 ISVIAAYFLLVIGVGLWSMCRTNRGTVGGYFLAGRSMVWWPVGASLFASNIGSGHFVGLA 62
Query: 78 ESLFSTGLLWCQAPVGYS-----LTLVAGALIFAKPMRDAGYITMLDPFQKTY-GRRIGG 131
+ ++G+ A G+ + L+ G +F AG ITM +K + G+RI
Sbjct: 63 GTGAASGI----AVAGFEWNALFVVLLLG-WLFVPVYLTAGVITMPQYLKKRFGGQRI-- 115
Query: 132 LLFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQV 191
LYLS +L LY+ + +S V
Sbjct: 116 ----------RLYLS-------------------VLSLFLYIFTKIS------------V 134
Query: 192 DL--TGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFG 243
D+ V ++ LG + Y SV + YT++GGL ++ YTD +Q I+ G
Sbjct: 135 DMFSGAVFIQQALGWNIYASVIALLGITMIYTVTGGLAALMYTDTVQTFVIIGG 188
>gnl|CDD|212060 cd11491, SLC5sbd_SMIT, Na(+)/myo-inositol cotransporter SMIT and
related proteins; solute-binding domain. Human SMIT is
a high-affinity myo-inositol transporter, and is
expressed in brain, heart, kidney, and lung. Inhibition
of myo-inositol uptake, through down-regulation of SMIT,
may be a common mechanism of action of mood stabilizers,
including lithium, carbamazepine, and valproate. SMIT is
encoded by the SLC5A3 gene, which is a candidate gene
for pathogenesis of nervous system dysfunction in Down
syndrome (DS). The SNP, 21q22 near SLC5A3-MRPS6-KCNE2,
has been associated with coronary heart disease,
cardiovascular disease, and myocardial infarction. SMIT
may also be involved in the pathogeneisis of congenital
cataract. SMIT also plays roles in osteogenesis, bone
formation, and bone mineral density determination. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 600
Score = 38.6 bits (90), Expect = 0.007
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 44/228 (19%)
Query: 18 IAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTA 77
I I+ ++ +VL +GI+A K LAGRS+ + +L + G +F G A
Sbjct: 2 IIVIVLYFILVLAIGIFAMWKSNRGTVSGYFLAGRSMTWLPVGASLFVSNIGSEHFIGLA 61
Query: 78 ESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPA 137
S + G + L +F +G +TM + K +G
Sbjct: 62 GSGAAAGFAVGAWEFNALILLQLLGWVFIPVYIASGVVTMPEYLSKRFG----------- 110
Query: 138 LLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVS 197
G++ + L A+L +LY+ + +S V+L +
Sbjct: 111 ---------------GERIRVYL----AVLSLLLYIFTKIS------------VNLYSGA 139
Query: 198 L--KVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFG 243
L + LG + Y+S+ + T++GGL +V YTD LQ ++ G
Sbjct: 140 LFIQESLGWNLYVSIILLIGLTALLTVTGGLAAVIYTDTLQAFLMIIG 187
>gnl|CDD|212062 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 479
Score = 38.3 bits (90), Expect = 0.008
Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 52/230 (22%)
Query: 21 ILTFYSIVLVV-GIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAES 79
++ Y + L + G+W +QK+ + L GRS+ L+++AT F
Sbjct: 4 VIVLYLLGLALLGLWLSGRQKS--TADYFLGGRSMPWWAVCLSIVATETSTLTFLSVPGV 61
Query: 80 LFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPALL 139
+ L + Q +GY L + A + ++ + G+R GG +
Sbjct: 62 AYGGDLTFLQLALGYILGRIIVAFVLLPRYFRGEVVSAYELL----GQRFGGGM------ 111
Query: 140 GDMLYLSSVLSSLGKQAKASLLFLPA-LLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSL 198
Q AS+ FL LL D + L T + +
Sbjct: 112 ---------------QKTASVTFLVTRLLADGVRLY------------------ATAIPI 138
Query: 199 KVILGI-----SDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFG 243
+ILG S LS+ + + + YT GG+ +V +TDV+QL+ + G
Sbjct: 139 SLILGADGVALSYILSIVVIGLVTLLYTYFGGIRAVVWTDVIQLVVYIGG 188
>gnl|CDD|226627 COG4147, DhlC, Predicted symporter [General function prediction
only].
Length = 529
Score = 38.1 bits (89), Expect = 0.011
Identities = 73/407 (17%), Positives = 141/407 (34%), Gaps = 61/407 (14%)
Query: 21 ILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESL 80
+ F I L + WA + ++ + V AG I L + + + F G A +
Sbjct: 12 FVLFVLITLYITYWASKRTRSATDYYV--AGGRITGFQNGLAIAGDYMSAASFLGIAGLI 69
Query: 81 FSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYG-RRIGGLLFLPALL 139
F +G +G++ + A+ +R G T D Y L + ++
Sbjct: 70 FISGYDGLIYSIGWTGGYPILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTII 129
Query: 140 GDMLYLSSVLSSLGKQAKA--------------SLLFLPALLGDMLYLSSVLSSLGKQAK 185
LYL + + G L+ + +LG M + V +
Sbjct: 130 VSFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLGGMKATTWV--------Q 181
Query: 186 ASHYQVDLTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSV-------SYTDVLQLI 238
+ + + I+ I L + +FA A T+ Y D + I
Sbjct: 182 IIQAVLLIVAALIMAIM-IMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFI 240
Query: 239 FIVFGLSY--------FQRILSLKSSTDAVNVSLISATACFFIV---IPAAIIGVLAKFV 287
+ F L R ++ + +A S+ AT FI I IIG A+ +
Sbjct: 241 SLGFALMVGTAGLPHILMRFFTVPDAKEA-RKSVFWAT--GFIGIFYILTPIIGAGARLL 297
Query: 288 ---DWSKIPGYDKPFDMTE----------SNSVLPLVLRYLTPGWVTFFGLGAVS-ASVM 333
+ P + + T +N L + G + A + A+ +
Sbjct: 298 VGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATAL 357
Query: 334 SSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVIS 380
S+A ++L S + ++Y + A+E + + V R++++ V++
Sbjct: 358 STAAGLLLVIASAVSHDLYAMVIKKGATEKKEVRVARIAVVILGVVA 404
>gnl|CDD|212059 cd11490, SLC5sbd_SGLT6, Na(+)/chiro-inositol cotransporter SGLT6
and related proteins; solute-binding domain. Human
SGLT6 (also called KST1, SMIT2) is a chiro-inositol
transporter, which also transports myo-inositol. It is
encoded by the SLC5A11 gene. Xenopus Na1-glucose
cotransporter type 1 (SGLT-1)-like protein is predicted
to contain 14 membrane-spanning regions. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 602
Score = 37.9 bits (88), Expect = 0.011
Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 330 ASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVIS 380
A++MSS S+ + ++FT +++ + RP+ASE+ELM V R+ +L V+S
Sbjct: 356 AALMSSLTSIFNSASTIFTMDLW-RHIRPRASEWELMIVGRVFVLVLVVVS 405
Score = 37.5 bits (87), Expect = 0.016
Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 42/227 (18%)
Query: 18 IAGILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTA 77
I ++ ++ VL VG+W+ K K + LAG+ + +L A+ G +F G A
Sbjct: 2 IVVLVLYFLFVLAVGLWSMWKTKRSTVKGYFLAGKDMVWWPVGASLFASNVGSGHFIGLA 61
Query: 78 ESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYG-RRIGGLLFLP 136
S ++G+ +++ A +F AG TM + QK +G +RI +FL
Sbjct: 62 GSGAASGIAATAYEWNGMFSVLVLAWLFLPIYIAAGVTTMPEYLQKRFGGKRIQ--IFL- 118
Query: 137 ALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGV 196
A+L +Y+ + +S A LF+ L LYL+ V
Sbjct: 119 AVLYLFIYIFTKISV---DMYAGALFIQQALQWDLYLAVVG------------------- 156
Query: 197 SLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFG 243
+L I+ YT++GGL +V YTD LQ + ++ G
Sbjct: 157 ----LLAIT------------AVYTVAGGLAAVIYTDALQTLIMLIG 187
>gnl|CDD|212050 cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 484
Score = 37.1 bits (87), Expect = 0.019
Identities = 29/146 (19%), Positives = 62/146 (42%), Gaps = 5/146 (3%)
Query: 269 ACFFIVIPAAIIGVLAK-FVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGA 327
F+++ PA +G A+ V I D + +VL L +
Sbjct: 273 GLFYLLAPA--LGFGARALVGPDVIGAAINELDGGGNMAVLLLAEALGLGDLLLALVAAG 330
Query: 328 VSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISC--SIAL 385
A+++++ ++L + S ++Y + RP ASE E + V R++ + V++ ++
Sbjct: 331 AFAAILATVAGLLLAAASALAHDLYAKVIRPGASEREELRVARIAAVVIGVVAILLALLA 390
Query: 386 SGASIYYLSVVCSDVVYVTLFPQLVL 411
++ +L + + FP L+L
Sbjct: 391 PPQNVAFLVALAFAIAASAFFPVLLL 416
>gnl|CDD|212046 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotransporter DUR3, and
related proteins; solute-binding domain. Dur3 is the
yeast plasma membrane urea transporter. Saccharomyces
cerevisiae DUR3 also transports polyamine. The polyamine
uptake of S. cerevisiae DUR3 is activated upon its
phosphorylation by polyamine transport protein kinase 2
(PTK2). S. cerevisiae DUR3 also appears to play a role
in regulating the cellular boron concentration. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 493
Score = 35.2 bits (82), Expect = 0.074
Identities = 49/235 (20%), Positives = 90/235 (38%), Gaps = 43/235 (18%)
Query: 16 YGIA-GILTFYSIVLVVGIWAGTK--QKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSY 72
YG+ G+ +++++V + K EE M AGRS+G + +++++W +
Sbjct: 1 YGVVLGLGALFALLMVFITRLLKRYRGKKQSSEEFMTAGRSVGTGLTAASIVSSWTWAAT 60
Query: 73 FTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGL 132
+A + G+ P Y+ L+FA RI
Sbjct: 61 LLQSATVAYQYGVS---GPFWYASGAALQILLFA-----------------PLAIRIKRK 100
Query: 133 LFLPALLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVD 192
L +++ GK A LF AL + + L+ +L LG A +
Sbjct: 101 APNAHTLLEIVRA-----RYGKAAHLVFLFF-ALFTNFIVLAMLL--LGGSAVVN----A 148
Query: 193 LTGVSLKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYF 247
LTG+++ + + + + YT+ GGL + TD + + I+ L F
Sbjct: 149 LTGMNI--------VAASFLIPLGVLLYTLFGGLRATFLTDYIHTVIILIILLIF 195
>gnl|CDD|212038 cd10328, SLC5sbd_YidK, uncharacterized SLC5 subfamily, Escherichia
coli YidK-like; solute binding domain. Uncharacterized
subfamily of the solute binding domain of the solute
carrier 5 (SLC5) transporter family (also called the
sodium/glucose cotransporter family or solute sodium
symporter family) that co-transports Na+ with sugars,
amino acids, inorganic ions or vitamins. One member of
the SLC5 family, human SGLT3, has been characterized as
a glucose sensor and not a transporter. This subfamily
includes the uncharacterized Escherichia coli YidK
protein, and belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 472
Score = 33.7 bits (78), Expect = 0.26
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 310 LVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVL 369
LV L P W+ F + +++SS +S + + ++F+ +IY P A++ +L+ V
Sbjct: 313 LVADVL-PKWLVGFFAAVLFGAILSSFNSALNSAATLFSLDIYKPIINPNATDKQLVKVG 371
Query: 370 RLSILAASVISCSIA 384
++ + ++IS IA
Sbjct: 372 KIFGIVLAIISMIIA 386
>gnl|CDD|236699 PRK10484, PRK10484, putative transporter; Provisional.
Length = 523
Score = 32.9 bits (76), Expect = 0.41
Identities = 16/85 (18%), Positives = 41/85 (48%)
Query: 300 DMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPK 359
+ ++ P ++ + P + F + +++S+ + + + ++F+ +IY P
Sbjct: 308 GLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFLNSASTLFSLDIYKPIINPN 367
Query: 360 ASEYELMWVLRLSILAASVISCSIA 384
ASE +L+ V + ++IS +A
Sbjct: 368 ASEKQLVKVGKKFGFVLAIISMIVA 392
>gnl|CDD|234293 TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705
subfamily. This family belongs to a larger family of
transporters of the sodium:solute symporter superfamily,
TC 2.A.21. Members of this strictly bacterial protein
subfamily are found almost invariably immediately
downstream from a member of family TIGR03647.
Occasionally, the two genes are fused.
Length = 552
Score = 32.6 bits (75), Expect = 0.52
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 317 PGWVTFFGL---GAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSI 373
P WV GL G ++A+ +S+A ++L S + ++Y++ P ASE + + V R+++
Sbjct: 364 PYWVI--GLVAAGGLAAA-LSTAAGLLLVISSAISHDLYYRIINPNASEKQRLLVARIAL 420
Query: 374 LAASVISCSIAL 385
+ A+VI+ L
Sbjct: 421 VVAAVIAGYFGL 432
>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and 2. SMCT1(the product
of the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (product of the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 477
Score = 32.1 bits (74), Expect = 0.67
Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 54/231 (23%)
Query: 21 ILTFYSIVLVVGIWAGTKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESL 80
I + I+L++GI+ K K+ E+ L GR + + ++IAT G F +
Sbjct: 5 IALYLLILLLIGIYTSRKNKS--NEDFFLGGRQMPWYLVAFSMIATSLSGVTFLSVPGEV 62
Query: 81 FSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYG---RRIGGLLFLPA 137
+ +G + Q +GY L + A + ++ + +K +G R+ G FL
Sbjct: 63 YGSGFTYLQFVLGYLLGYLIIAFVLLPLFYRLNLTSIYEYLEKRFGRSVRKTGAFFFL-- 120
Query: 138 LLGDMLYLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVS 197
LS L + L+ AL+
Sbjct: 121 -------LSRTLGA------GIRLYAVALV------------------------------ 137
Query: 198 LKVILGISDY----LSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL 244
L+ +L L+V I+ + YT GG+ +V +TDVLQ + ++ G+
Sbjct: 138 LQQVLFDDLGVPFWLTVLITGVLIWLYTTLGGIKAVVWTDVLQTVVMLGGV 188
Score = 30.2 bits (69), Expect = 2.8
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 248 QRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTESNSV 307
QR LS ++ DA + + + ++G+L + + + +
Sbjct: 254 QRNLSCRNLKDAQKNMYWNGVGLVPVNLLFLLLGLLL-YAYYRDNG--PALPGKVAGDQL 310
Query: 308 LP-LVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRP-KASEYEL 365
P L L PG F G ++A+ MSSADS + ++F + + R + SE +
Sbjct: 311 FPYFALDGLPPGLPGLFVAGIIAAA-MSSADSALNALTTVFCEDFLKRFKRSWQLSERKY 369
Query: 366 MWVLRLSILAASVISCSIAL 385
+ + + L ++ +AL
Sbjct: 370 VHISKSLTLLLGILCFGMAL 389
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (encoded by the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and -2. SMCT1(encoded by
the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (encoded by the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 522
Score = 32.1 bits (74), Expect = 0.76
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 198 LKVILGISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGL 244
L + GI+ ++SV I + YT GGL +V +TDV Q++ + G+
Sbjct: 142 LNQVTGINLWISVLIVGIVCTFYTTLGGLKAVVWTDVFQVVVMFGGV 188
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like;
solute binding domain. This superfamily includes the
solute-binding domain of SLC5 proteins (also called the
sodium/glucose cotransporters or solute sodium
symporters), SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporters or
Na+/Cl--dependent transporters), and
nucleobase-cation-symport-1 (NCS1) transporters. SLC5s
co-transport Na+ with sugars, amino acids, inorganic
ions or vitamins. SLC6s include Na+/Cl--dependent plasma
membrane transporters for the monoamine
neurotransmitters serotonin, dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NCS1s are essential components of
salvage pathways for nucleobases and related
metabolites; their known substrates include allantoin,
uracil, thiamine, and nicotinamide riboside. Members of
this superfamily are important in human physiology and
disease. They contain a functional core of 10
transmembrane helices (TMs): an inverted structural
repeat, TMs1-5 and TMs6-10; TMs numbered to conform to
the SLC6 Aquifex aeolicus LeuT.
Length = 413
Score = 30.3 bits (68), Expect = 2.7
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 189 YQVDLTGVSLKVILGISD-----YLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFG 243
+ L G++L+ ILGI S+ I + AV Y+I GGL ++ +TDV+ + F+V G
Sbjct: 92 SVLYLGGLALETILGILTGFTNLMYSILILALIAVVYSIYGGLSAIVWTDVIAVPFLVLG 151
>gnl|CDD|226626 COG4146, COG4146, Predicted symporter [General function prediction
only].
Length = 571
Score = 30.2 bits (68), Expect = 3.0
Identities = 89/404 (22%), Positives = 161/404 (39%), Gaps = 56/404 (13%)
Query: 21 ILTFYSIVLVVGI--WAGTKQKNHGEEE-VMLAGRSIGKIVGVLTLIATWGGGSYFTGTA 77
IL+F + L+V I W T+ + + LAGRS+ +V +L+ T G
Sbjct: 6 ILSFLGVTLLVAIISWWKTRGTDLSSSKGYFLAGRSLSGLVIACSLVLTNLSTEQLVGLN 65
Query: 78 ESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRR---IGGLLF 134
+ + V + L+ AL F G T+ D ++ + + I LF
Sbjct: 66 GQAYKGNMSVMAWEVTSVIPLIFLALYFLPRYLKRGITTIPDFLEERFDKTTRMIISFLF 125
Query: 135 LPA----LLGDMLY--------LSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGK 182
L A L +LY + + L A++ L +G L +++ L
Sbjct: 126 LIAYGVCFLPTVLYSGALALNSIFHLGEVLQISHGAAIWLLVIAIGLAGILYAIIGGL-- 183
Query: 183 QAKASHYQVDLTGVSLKV-----------ILGISDYLS--VTISTMFAVAYTISGGL--- 226
KA + G+ L + LG + I+T+ A GG
Sbjct: 184 --KAMAVSDTINGIGLVIGGLLVPIFALIALGKGSFAQGIEQITTVHAEKLNAIGGPTDP 241
Query: 227 --YSVSYTDVL--QLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVIPAAII-- 280
+ ++T +L + QR L+ KS + +L+ A F ++ P ++
Sbjct: 242 VPWGAAFTGLLLVNTFYWCTNQGIVQRTLAAKSLAEGQKGALL--AAVFKMLDPLVLVLP 299
Query: 281 GVLAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSADSVI 340
G++A F + +P D + T N+VLP+ L V FFG + +++S+ + +
Sbjct: 300 GLIA-FHLYGDLPKADMAYP-TLVNNVLPVPL-------VGFFG-AVLFGAILSTFNGFL 349
Query: 341 LGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIA 384
+ ++F+ +IY + + A E EL+ V R +++S IA
Sbjct: 350 NSASTLFSMDIYRRIIKQNAEEQELVTVGRKFGAFIAIVSVLIA 393
>gnl|CDD|182070 PRK09776, PRK09776, putative diguanylate cyclase; Provisional.
Length = 1092
Score = 30.0 bits (68), Expect = 3.9
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 354 QSFRPKASEYELM-----WVLR------LSILAASVISCSIALSGASIY 391
+FRP A + LM V+ +A+ +S ++ LS A +
Sbjct: 890 GAFRPAAEDPALMHALDRRVIHEFFRQAAKAVASKGLSIALPLSVAGLS 938
>gnl|CDD|233141 TIGR00820, zip, ZIP zinc/iron transport family. The Zinc
(Zn2+)-Iron (Fe2+) Permease (ZIP) Family (TC
2.A.5)Members of the ZIP family consist of proteins with
eight putative transmembrane spanners. They are derived
from animals, plants and yeast. Theycomprise a diverse
family, with several paralogues in any one organism
(e.g., at least five in Caenorabditis elegans, at least
five in Arabidopsis thaliana and two inSaccharomyces
cervisiae. The two S. cerevisiae proteins, Zrt1 and
Zrt2, both probably transport Zn2+ with high
specificity, but Zrt1 transports Zn2+ with ten-fold
higher affinitythan Zrt2. Some members of the ZIP family
have been shown to transport Zn2+ while others transport
Fe2+, and at least one transports a range of metal ions.
The energy source fortransport has not been
characterized, but these systems probably function as
secondary carriers [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 324
Score = 28.9 bits (65), Expect = 6.6
Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 27/122 (22%)
Query: 372 SILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGANHV--NSYGCLSSVV 429
SIL ASVI L G ++ L + F V++ G HV ++ LSS
Sbjct: 25 SILLASVIGVMFPLIGKNVPSLRPEGNFFFVAKAFAAGVILATGFMHVLPEAFEMLSS-- 82
Query: 430 IGILLRITGGEPNLGLPALIKYPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFE 489
P L PW FPF ++SA LL+ A +E
Sbjct: 83 ----------------PCLESTPWGK-------FPFAGFIAMISAILTLLVDLFATSYYE 119
Query: 490 KK 491
+K
Sbjct: 120 RK 121
>gnl|CDD|129836 TIGR00753, undec_PP_bacA, undecaprenyl-diphosphatase UppP. This is
a family of small, highly hydrophobic proteins.
Overexpression of this protein in Escherichia coli is
associated with bacitracin resistance, and the protein
was originally proposed to be an undecaprenol kinase and
called bacA. It is now known to be an undecaprenyl
pyrophosphate phosphatase (EC 3.6.1.27) and is renamed
UppP [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 255
Score = 28.5 bits (64), Expect = 7.1
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 198 LKVILGISDYLSVTIST-MFAVAYTISGGLYSVSYTDVLQL--IFIVFGLSYFQRILSL- 253
L ++ G++++L ++ + + V + + G S+T V+QL I V + +++RIL L
Sbjct: 4 LGIVQGLTEFLPISSTGHLIIVRHILGSGDAGKSFTIVIQLGSILAVV-IYFWRRILRLL 62
Query: 254 -----KSSTDAVNVSLISATACFFIVIPAAIIGVLAKF 286
S+ + L+ +IP ++G+L K
Sbjct: 63 GIWIRFSTRKTESSDLLLLKLILLGLIPTVVLGLLFKD 100
>gnl|CDD|184347 PRK13821, thyA, thymidylate synthase; Provisional.
Length = 323
Score = 28.6 bits (64), Expect = 7.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 294 GYDKPFDMTESNSVLPLVLRY--LTPGWVTFF 323
G PF++TE ++L LV R TP W T+F
Sbjct: 219 GLGTPFNLTEGAALLSLVGRLTGYTPRWFTYF 250
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.407
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,216,562
Number of extensions: 2626954
Number of successful extensions: 3659
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3571
Number of HSP's successfully gapped: 179
Length of query: 515
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 414
Effective length of database: 6,457,848
Effective search space: 2673549072
Effective search space used: 2673549072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (27.2 bits)