RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16064
(515 letters)
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats,
LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus}
PDB: 2xq2_B 2kpe_A
Length = 593
Score = 74.1 bits (182), Expect = 4e-14
Identities = 88/480 (18%), Positives = 179/480 (37%), Gaps = 55/480 (11%)
Query: 21 ILTFYSIVLVVGIWAG--TKQKNHGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAE 78
+ +I++ VG+W K E+ LAG+S+ +LIA F G +
Sbjct: 16 FAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAANISAEQFIGMSG 75
Query: 79 SLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITMLDPFQKTYGRRIGGLLFLPAL 138
S +S GL ++TL+ F + G T+ + +K + +++ +L + +
Sbjct: 76 SGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWI 135
Query: 139 LGDML-YLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVL--------SSLGKQAKASHY 189
+ L+SVL G L L +LG L S + S G A +
Sbjct: 136 SLYIFVNLTSVLYLGG-------LALETILGIPLMYSILGLALFALVYSIYGGL-SAVVW 187
Query: 190 ------------QVDLTGVSLKVILGISDYLSVTISTMFAV--AYTISGGLYSVSYTDVL 235
T +++ I G + + + A + + + Y ++
Sbjct: 188 TDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLP 247
Query: 236 QLIFIVFG-----LSYF-------QRILSLKSSTDAVNVSLISATACFFIVIPAAIIGVL 283
+ ++ G L Y+ QR L+ KS ++A + +A + + G+
Sbjct: 248 GIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIA 307
Query: 284 A-------KFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMSSA 336
A + + ++ P + ++L P V A++A+++SS
Sbjct: 308 AYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQFL-PVGVKGVVFAALAAAIVSSL 366
Query: 337 DSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLSVV 396
S++ + ++FT +IY + P + +++L+ V R + + A +I+ IA I
Sbjct: 367 ASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIAALIAPMLGGIGQCFQY 426
Query: 397 CSDVVYVTLFPQLVLVVHGA--NHVNSYGCLSSVVIGILLRITGGEPNLGLPALIKYPWY 454
+ + L + + G S G + VV I + L +P + + +
Sbjct: 427 IQEYTGLVSPGILAVFLLGLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYT 486
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
transport, SGLT, ION TRAN membrane, sodium transport,
symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Length = 530
Score = 67.5 bits (165), Expect = 4e-12
Identities = 84/448 (18%), Positives = 165/448 (36%), Gaps = 51/448 (11%)
Query: 50 AGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPM 109
AG+S+ +LIA F G + S +S GL ++TL+ F
Sbjct: 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIF 77
Query: 110 RDAGYITMLDPFQKTYGRRIGGLLFLPALLGDML-YLSSVLSSLGKQAKASLLFLPALLG 168
+ G T+ + +K + +++ +L + + + L+SVL G L L +LG
Sbjct: 78 IEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGG-------LALETILG 130
Query: 169 DMLYLSSVLSSLGKQA-------KASHYQ------------VDLTGVSLK-------VIL 202
L S + +L A + T +++
Sbjct: 131 IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFA 190
Query: 203 GISDYLSVTISTMFAVAYTISGGLYSVSYTDVLQLIFIVFGLSYF-------QRILSLKS 255
G+S + + + ++ VL V L Y+ QR L+ KS
Sbjct: 191 GVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKS 250
Query: 256 STDAVNVSLISA----TACFFIVIPAAIIGVLAKFVDWSKIPGYDKPFDMTE---SNSVL 308
++A + +A F +V+P V+ G ++ ++
Sbjct: 251 VSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAY 310
Query: 309 PLVLRYLTPGWVTFFGLGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWV 368
P + ++L P V A++A+++SS S++ + ++FT +IY + P + +++L+ V
Sbjct: 311 PWLTQFL-PVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNV 369
Query: 369 LRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGA--NHVNSYGCLS 426
R + + A +I+C IA I + + L + + G S G +
Sbjct: 370 GRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWKKTTSKGAII 429
Query: 427 SVVIGILLRITGGEPNLGLPALIKYPWY 454
VV I + L +P + + +
Sbjct: 430 GVVASIPFALFLKFMPLSMPFMDQMLYT 457
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 3e-10
Identities = 96/520 (18%), Positives = 159/520 (30%), Gaps = 172/520 (33%)
Query: 95 SLTLVAGAL--IFAKPMRDAGYITML-DPFQKTYGRRIGGLLFLPA-------------- 137
LTL G+L + P + L + F K LP
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKI----------LPEPTEGFAADDEPTTP 57
Query: 138 --LLGDML-YLSSVLSSLGKQAKASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLT 194
L+G L Y+SS++ + L L + + + L A A+ +
Sbjct: 58 AELVGKFLGYVSSLVEP--SKVGQFDQVLNLCLTE--FENCYLEGNDIHALAAKLLQEND 113
Query: 195 GVSLKVILGISDYLSVTI-----------STMFAVA-------YTISGG----------- 225
+K I +Y++ I S +F I GG
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 226 --LYSVSYTDVLQLIFIVFGL------------SYFQR---ILS-LKSSTDAVNVS-LIS 266
LY + V LI F + IL L++ ++ + L+S
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 267 ATACFFIVIPAAIIGV--LAKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFG 324
P +IGV LA +V +K+ G+ P ++ T
Sbjct: 234 IPISC----P--LIGVIQLAHYVVTAKLLGFT-PGELRSYLK------------GATGHS 274
Query: 325 LGAVSASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWV-LR------LSILAAS 377
G V+A ++ D S F ++ KA L ++ +R + L S
Sbjct: 275 QGLVTAVAIAETD-----SWESFFVSVR------KAITV-LFFIGVRCYEAYPNTSLPPS 322
Query: 378 VISCSIALS-GASIYYLSVVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLR- 435
++ S+ + G LS+ S++ + + N NS+ + I L
Sbjct: 323 ILEDSLENNEGVPSPMLSI--SNLTQEQVQDYV-------NKTNSHLPAGK-QVEISLVN 372
Query: 436 ------ITGGEPNLGLPAL------IKYPWYDYQ-----LQQQL-----F-----PFKTM 468
++G P L L K P Q +++L F PF +
Sbjct: 373 GAKNLVVSG--PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS- 429
Query: 469 AMLLSAASHLLISKLAA--IVFEKKLL-----STERWDVL 501
LL AS L+ L + F K + T L
Sbjct: 430 -HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Score = 37.0 bits (85), Expect = 0.020
Identities = 34/153 (22%), Positives = 49/153 (32%), Gaps = 44/153 (28%)
Query: 311 VLR--YLTPGWVTFFG--LG-----AVSASVMSSADSVILGSGSMFTRNIYHQSFRPK-- 359
L+ L P TF G LG A A VMS V + +F R + Q P+
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV----VFYRGMTMQVAVPRDE 1801
Query: 360 --ASEYELMWVLRLSILAASVISCSIALSGASIYYLSVVCSDVVYVTLFPQLVLVVHGAN 417
S Y ++A + + + S + L V V T LV +V N
Sbjct: 1802 LGRSNY--------GMIAINPGRVAASFSQEA---LQYVVERVGKRT--GWLVEIV---N 1845
Query: 418 HVNSYGCLSSVVIGILLRITGGEPNLGLPALIK 450
+ N V G+ L +
Sbjct: 1846 Y-NVEN--QQYVA-------AGDLR-ALDTVTN 1867
Score = 36.2 bits (83), Expect = 0.028
Identities = 34/184 (18%), Positives = 60/184 (32%), Gaps = 48/184 (26%)
Query: 22 LTFYS---IVLV-VGIWAGTKQKNHGEEEVMLAGRSIG------KIVGVLTLIATWGGGS 71
T ++ + L+ + K K + AG S+G + V++
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS--------- 1778
Query: 72 YFTGTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDAGYITM--LDPFQKTYGRRI 129
E +F G+ A L +I P R A + L + G+R
Sbjct: 1779 -IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 130 GGLL----F------------LPALLGDMLYLSSVLSSLGKQAKASLLFLPALLG----- 168
G L+ + L AL D +++VL+ + Q K ++ L L
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRAL--DT--VTNVLNFIKLQ-KIDIIELQKSLSLEEVE 1892
Query: 169 DMLY 172
L+
Sbjct: 1893 GHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 2e-05
Identities = 75/508 (14%), Positives = 135/508 (26%), Gaps = 157/508 (30%)
Query: 42 HGEEEVMLAGRSIGKIVGVLTLIATWGGGSYFTGTAESLFSTGLLWCQAPVGYSLTLVAG 101
G + G GK + L + + + W
Sbjct: 156 DG----V-LG--SGK--TWVALDV------CLSYKVQCKMDFKIFW-------------- 186
Query: 102 ALIFAKPMRDAGYITMLD----PFQKTYGRRIGGLLFLPALLGDM-LYLSSVLSSLGKQA 156
L + ML + R + + + L +L S K
Sbjct: 187 -LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS--KPY 243
Query: 157 KASLLFLPALLGDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKVILGISDYLSVTISTMF 216
+ LL L + + ++ K IL + + VT
Sbjct: 244 ENCLLVL-----LNVQNAKAWNAFNLSCK---------------ILLTTRFKQVTDFLSA 283
Query: 217 AVAYTISGGLYSVSYT--DVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIV 274
A IS +S++ T +V L+ L N +S +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ----DLPREVLTTNPRRLS-------I 332
Query: 275 IPAAIIGVLAKFVDWSKIPGYDK-------------PFDMT---ESNSVLP-------LV 311
I +I LA + +W + DK P + + SV P ++
Sbjct: 333 IAESIRDGLATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 312 LRYLTPGWVTFFGLGAVSASVMSSAD-----SVILGSGSMFTRNIY--HQSFRPKASEYE 364
L + W + + VM + S++ T +I + + K
Sbjct: 392 LSLI---W-----FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-- 441
Query: 365 LMWVLRLSILAASVISCSIALSGASI-----YYLSVVCSDVVY----------VTLFPQL 409
+ L SI+ I + Y+ S + + +TLF +
Sbjct: 442 -EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF----YSHIGHHLKNIEHPERMTLFRMV 496
Query: 410 VLVVHGANHVNSYGCLSSVVI--GILLRITGGEPNLGLPALIKY--------PWYDYQLQ 459
L + L + +G N L L Y P Y+ +L
Sbjct: 497 FL---------DFRFLEQKIRHDSTAWNASGSILNT-LQQLKFYKPYICDNDPKYE-RLV 545
Query: 460 QQLFPFKTMAMLLSAASHLLISKLAAIV 487
+ F L +L+ SK ++
Sbjct: 546 NAILDF-----LPKIEENLICSKYTDLL 568
Score = 34.8 bits (79), Expect = 0.078
Identities = 48/317 (15%), Positives = 82/317 (25%), Gaps = 102/317 (32%)
Query: 230 SYTDVLQLIFIVFGLSYFQRILSLKSSTDAVNVSLISATACFFIVI-PAA------IIGV 282
Y D+L VF F K D S++S I++ A +
Sbjct: 17 QYKDILS----VF-EDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 283 L--------AKFVDWSKIPGYDKPFDMTESNSVLPLVLRYLTPGWVTFFGLGAVSASVMS 334
L KFV+ Y F M+ P+ P +T +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINY--KFLMS------PIKTEQRQPSMMT---------RMYI 113
Query: 335 SADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRLSILAASVISCSIALSGASIYYLS 394
+ +F + Y+ S R + LR ++L
Sbjct: 114 EQRDRLYNDNQVFAK--YNVS-RL-----QPYLKLRQALL-------------------- 145
Query: 395 VVCSDVVYVTLFPQLVLVVHGANHVNSYGCLSSVVIGILLR--------------ITGG- 439
L P +++ G G + V + +
Sbjct: 146 ---------ELRPAKNVLIDGVL-----GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 440 --EPNLGLPALIK-YPWYDYQLQQQLFPFKTMAMLLSAASHLLISKLAAIVFEKKLLSTE 496
P L L K D + + + + + L L + +E LL
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 497 R-WD--VLNAFPDVKTK 510
+ NAF ++ K
Sbjct: 252 NVQNAKAWNAF-NLSCK 267
Score = 32.5 bits (73), Expect = 0.35
Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 21/196 (10%)
Query: 56 KI-VGVLTLIATWGGGSYFT--GTAESLFSTGLLWCQAPVGYSLTLVAGALIFAKPMRDA 112
I +L+LI W L L+ Q P ++++ + L + +
Sbjct: 386 HIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENE 442
Query: 113 GYI--TMLDPFQKTYGRRIGGLLFLPALLGDMLYLSSVLS---SLGKQAKASLLFLPALL 167
+ +++D + L+ D Y S + + + LF +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYL---DQ-YFYSHIGHHLKNIEHPERMTLF-RMVF 497
Query: 168 GDMLYLSSVLSSLGKQAKASHYQVDLTGVSLKV----ILGISDYLSVTISTMFAVAYTIS 223
D +L + AS ++ LK I ++ + I
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 224 GGLYSVSYTDVLQLIF 239
L YTD+L++
Sbjct: 557 ENLICSKYTDLLRIAL 572
>3gr5_A ESCC; secretin, type III secretion system, outer membrane,
transport, membrane protein; 2.05A {Escherichia coli}
Length = 156
Score = 29.6 bits (66), Expect = 1.6
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 175 SVLSSLGKQAKASHYQVDLTGVSLKVIL-GISDYLSVTISTMFAVAYTISGGLYSVSYTD 233
S +SSL K+ + Y + ++ IL + S+ + +V SG + +
Sbjct: 2 SHMSSLEKRLGKNEYFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVK 61
Query: 234 VLQLIFIVFGLSYFQ 248
VL+ + ++ L+++
Sbjct: 62 VLEKLSKLYHLTWYY 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 29.0 bits (66), Expect = 3.4
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 15/62 (24%)
Query: 145 LSSVLSSLGKQAKASLLFLPAL-------LGD--------MLYLSSVLSSLGKQAKASHY 189
L+S GK +A L+ L G ++ GKQ + +
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260
Query: 190 QV 191
Sbjct: 261 GE 262
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.407
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,697,352
Number of extensions: 464641
Number of successful extensions: 1048
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1038
Number of HSP's successfully gapped: 24
Length of query: 515
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 417
Effective length of database: 3,965,535
Effective search space: 1653628095
Effective search space used: 1653628095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.0 bits)