RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16064
         (515 letters)



>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 545

 Score = 27.8 bits (62), Expect = 3.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 114 YITMLDPFQKTYGRRIGGLLFLPALLGDM 142
           Y T  +  ++ +G  + G + L A LG M
Sbjct: 139 YETFAEVARQHFGGTLAGTITLTAGLGGM 167


>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 191

 Score = 27.1 bits (59), Expect = 3.7
 Identities = 7/80 (8%), Positives = 25/80 (31%), Gaps = 11/80 (13%)

Query: 330 ASVMSSADSVILGSGSMFTRNIYHQSFRPKASEYELMWVLRL---------SILAASVIS 380
               +   + ++      ++ +       +  +    W + L         ++L A  ++
Sbjct: 103 PDENAIELARVVDRSLRDSKALDLTKLVIEPGKSV--WTVWLDVYVLDYGGNVLDACTLA 160

Query: 381 CSIALSGASIYYLSVVCSDV 400
              AL    +Y +    + +
Sbjct: 161 SVAALYNTKVYKVEQHSNGI 180


>d2gnxa2 d.109.3.1 (A:295-440) Hypothetical protein BC048403 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 146

 Score = 25.9 bits (57), Expect = 6.9
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 246 YFQRILSLKSSTDAVNVSLISATAC 270
            F +I S     DA NVSLI     
Sbjct: 3   LFGKISSFIRKYDAANVSLIFDNRG 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,812,128
Number of extensions: 79992
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 6
Length of query: 515
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 426
Effective length of database: 1,185,626
Effective search space: 505076676
Effective search space used: 505076676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.6 bits)