BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16066
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 32.0 bits (71), Expect = 0.20, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 73 ILRYLATAVIINRSKR--NALKDLVKVIQQESYTYKDPITEFLEHLYVSFD 121
++R+L +I + +R ++ + + +Q SY KDPI EF + Y FD
Sbjct: 749 VIRFLMLRIIDDHWRRYLEEVEHVKEAVQLRSYGQKDPIVEFKKETYYMFD 799
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 32.0 bits (71), Expect = 0.20, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 73 ILRYLATAVIINRSKR--NALKDLVKVIQQESYTYKDPITEFLEHLYVSFD 121
++R+L +I + +R ++ + + +Q SY KDPI EF + Y FD
Sbjct: 749 VIRFLMLRIIDDHWRRYLEEVEHVKEAVQLRSYGQKDPIVEFKKETYYMFD 799
>pdb|3SQL|A Chain A, Crystal Structure Of Glycoside Hydrolase From
Synechococcus
pdb|3SQL|B Chain B, Crystal Structure Of Glycoside Hydrolase From
Synechococcus
pdb|3SQM|A Chain A, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
pdb|3SQM|B Chain B, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
pdb|3SQM|C Chain C, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
pdb|3SQM|D Chain D, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
Length = 535
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 37 LKDLVKVIQQVSRDLIID--MFLNRPHYLNAIQTMCPHILRYLA 78
L D + V+Q+++ + + +F P++L A+QT P I + +
Sbjct: 462 LADPIDVLQKIAAQIPLQGVIFYGSPYFLEALQTTLPEIPWWFS 505
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 86 SKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSF 120
+++ ALKDL+K + + YK+ I E E++ +F
Sbjct: 299 ARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAF 333
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 86 SKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSF 120
+++ ALKDL+K + + YK+ I E E++ +F
Sbjct: 278 ARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAF 312
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 85 RSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDN 138
R + + L+ V++ + +T D T+F+E FD + + ++ T+ E + N
Sbjct: 445 RGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGN 498
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 85 RSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDN 138
R + + L+ V++ + +T D T+F+E FD + + ++ T+ E + N
Sbjct: 445 RGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGN 498
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 85 RSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDN 138
R + + L+ V++ + +T D T+F+E FD + + ++ T+ E + N
Sbjct: 445 RGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGN 498
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 85 RSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDN 138
R + + L+ V++ + +T D T+F+E FD + + ++ T+ E + N
Sbjct: 445 RGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGN 498
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 26.9 bits (58), Expect = 6.9, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 85 RSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDN 138
R + + L+ V++ + +T D T+F+E FD + + ++ T+ E + N
Sbjct: 422 RGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGN 475
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 26.9 bits (58), Expect = 7.0, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 85 RSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDN 138
R + + L+ V++ + +T D T+F+E FD + + ++ T+ E + N
Sbjct: 422 RGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGN 475
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 26.9 bits (58), Expect = 7.0, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 85 RSKRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDN 138
R + + L+ V++ + +T D T+F+E FD + + ++ T+ E + N
Sbjct: 422 RGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGN 475
>pdb|1W99|A Chain A, Mosquito-Larvicidal Toxin Cry4ba From Bacillus
Thuringiensis Ssp. Israelensis
Length = 558
Score = 26.6 bits (57), Expect = 9.4, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 72 HILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPITE 111
HIL Y+ T VI S R + K++ + Y D IT+
Sbjct: 360 HILSYIKTDVIDYNSNRVSFAWTHKIVDPNNQIYTDAITQ 399
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.140 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,520,231
Number of Sequences: 62578
Number of extensions: 159080
Number of successful extensions: 633
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 22
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)