Query psy16066
Match_columns 182
No_of_seqs 162 out of 221
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 19:58:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_R RPN7, 26S proteasome re 98.6 8.2E-08 2.8E-12 85.3 7.1 126 50-178 229-358 (429)
2 3txn_A 26S proteasome regulato 97.5 0.00059 2E-08 61.2 10.1 153 15-178 154-327 (394)
3 4b4t_Q 26S proteasome regulato 97.1 0.0019 6.6E-08 53.2 8.5 107 69-178 257-367 (434)
4 1ufm_A COP9 complex subunit 4; 75.5 1.5 5.1E-05 31.1 2.2 32 143-178 10-41 (84)
5 3t5x_A PCI domain-containing p 58.6 67 0.0023 25.5 9.1 91 72-178 54-152 (203)
6 4b4t_P 26S proteasome regulato 42.2 41 0.0014 29.6 5.8 107 70-178 257-370 (445)
7 3o18_A C-phycocyanin alpha sub 40.5 1.2E+02 0.0041 23.6 7.7 23 63-85 81-103 (162)
8 3v53_A RNA-binding protein 25; 39.7 1.1E+02 0.0039 23.1 7.1 59 92-162 53-112 (119)
9 2vml_B Phycocyanin beta chain; 37.6 1.4E+02 0.0046 23.6 7.6 23 63-85 79-101 (172)
10 3k1s_A PTS system, cellobiose- 31.5 27 0.00094 26.0 2.4 20 118-137 34-53 (109)
11 3l0f_B C-phycocyanin beta chai 31.2 1.6E+02 0.0056 23.1 7.1 23 63-85 79-101 (172)
12 1nf1_A NF1-333, protein (neuro 29.7 99 0.0034 26.2 6.0 44 73-116 192-253 (333)
13 3l8r_A PTCA, putative PTS syst 29.0 32 0.0011 26.2 2.4 20 118-137 49-68 (120)
14 2e2a_A Protein (enzyme IIA); h 27.8 34 0.0012 25.2 2.4 20 118-137 32-51 (105)
15 1wcr_A PTS system, N, N'-diace 27.7 35 0.0012 25.1 2.4 20 118-137 30-49 (103)
16 1rz4_A Eukaryotic translation 27.6 50 0.0017 27.0 3.6 32 147-178 132-163 (226)
17 1wer_A P120GAP; GTPase activat 27.0 1.2E+02 0.0041 25.7 6.0 28 74-101 189-227 (334)
18 2vml_A Phycocyanin alpha chain 25.4 59 0.002 25.3 3.5 26 5-30 75-100 (162)
19 4b0z_A RPN12, 26S proteasome r 24.9 71 0.0024 25.7 4.0 34 145-178 168-201 (229)
20 1xg0_C B-phycoerythrin beta ch 24.5 62 0.0021 25.7 3.5 26 5-30 75-100 (177)
21 1kdl_A YOPD protein; yersinia, 24.3 37 0.0013 19.6 1.5 13 35-47 2-14 (26)
22 2c7l_B Phycoerythrocyanin beta 24.0 65 0.0022 25.5 3.5 27 5-31 75-101 (172)
23 1kn1_A Allophycocyanin; helix- 23.6 67 0.0023 25.0 3.5 25 6-30 74-98 (160)
24 1td6_A F10_ORF294, hypothetica 23.2 1.4E+02 0.0047 25.9 5.6 47 106-155 49-102 (306)
25 1kn1_B Allophycocyanin; helix- 23.1 70 0.0024 24.9 3.5 25 6-30 75-99 (161)
26 1xg0_C B-phycoerythrin beta ch 21.9 2.4E+02 0.0083 22.2 6.6 25 61-85 77-101 (177)
27 2c7l_B Phycoerythrocyanin beta 21.6 2.9E+02 0.01 21.6 7.1 26 60-85 76-101 (172)
28 3nph_B Phycobilisome 32.1 kDa 21.4 85 0.0029 24.7 3.6 32 34-65 94-125 (148)
29 2ky4_A Phycobilisome linker po 20.1 96 0.0033 24.4 3.7 32 34-65 97-128 (149)
No 1
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=8.2e-08 Score=85.29 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=95.0
Q ss_pred hHHHHHHhCChhhhHHHHhhchhHHHHHHHHHHhhhchhHHHHHHHHHHhhccccCC----CcHHHHHHHHhhccchHHH
Q psy16066 50 DLIIDMFLNRPHYLNAIQTMCPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYK----DPITEFLEHLYVSFDFESA 125 (182)
Q Consensus 50 d~i~d~Fl~~~~Yln~IQt~cPhlLRYla~AvI~nr~rr~~lkdlv~vI~qe~y~Y~----DPiTeFl~~L~v~fDFe~A 125 (182)
..++|.|. ++.+.+.++..++ +.|.+.+.++.-.|.+....++.-..-..+... +|+++++.++|....++..
T Consensus 229 ~~f~e~~~-t~~~~e~~~~~~~--~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~ 305 (429)
T 4b4t_R 229 KLLVDSLA-TFTSIELTSYESI--ATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYF 305 (429)
T ss_dssp HHHHHHHH-HSCCSCHHHHHHH--HHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhc-cCCccchhhHHHH--HHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHH
Confidence 35556554 4555566655544 556666666555554444433332222233333 4578999999999999999
Q ss_pred HHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHhhhhcccccHHHHHhHhh
Q psy16066 126 REKLTECTEVLDNDFFLVACLDEFVENARLMIFETFCRIHQCISIQKESNVID 178 (182)
Q Consensus 126 q~~L~~~e~v~~~DfFL~~~~~~f~e~AR~lIfEtYCrIH~~I~I~~la~~L~ 178 (182)
+..+...+..+..|.||.++.+.+.++.|...+..||+.|++|+++.||+.||
T Consensus 306 ~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~ 358 (429)
T 4b4t_R 306 PYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFG 358 (429)
T ss_dssp HHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHT
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999987
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.47 E-value=0.00059 Score=61.22 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=98.6
Q ss_pred hchHHHHHHHHHHHHc------ccchhhhHHHHHHHhh-hc------hhHHHHHHhCChhhhHHHHhhchhHHHHHHHHH
Q psy16066 15 MCPHILRYLATAVIIN------RSKRNALKDLVKVIQQ-VS------RDLIIDMFLNRPHYLNAIQTMCPHILRYLATAV 81 (182)
Q Consensus 15 ~~p~lLRYl~~avi~~------~~r~~~lkdlVrvIqq-Eg------rd~i~d~Fl~~~~Yln~IQt~cPhlLRYla~Av 81 (182)
+-|++=.+++.|-=+. .+.+..++.--.+.|- +. ...+.|.| ++|-++.-...--.++|++.|.
T Consensus 154 n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf---~~f~~~~~~~~~~~lkYlvL~a 230 (394)
T 3txn_A 154 NLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF---EGFDSVDSVKALTSLKYMLLCK 230 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH---HHHTTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH---hcccccccHHHHHHHHHHHHHH
Confidence 4456555555442111 1235556666556665 32 22344433 2343322222236899999999
Q ss_pred HhhhchhHHHHHHHHHHhhc-cccCCCcHHHHHHHH---hhccchHHHHHHHHHHHhhhhcccchhhhHH----HHHHHH
Q psy16066 82 IINRSKRNALKDLVKVIQQE-SYTYKDPITEFLEHL---YVSFDFESAREKLTECTEVLDNDFFLVACLD----EFVENA 153 (182)
Q Consensus 82 I~nr~rr~~lkdlv~vI~qe-~y~Y~DPiTeFl~~L---~v~fDFe~Aq~~L~~~e~v~~~DfFL~~~~~----~f~e~A 153 (182)
+++..|.+ ++ .++.++ ...|.+|-.+.+..| |.+-|+.+..+.|.+.+..+..|.||..+.+ .+.+.|
T Consensus 231 Ll~~~r~e-l~---~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~ 306 (394)
T 3txn_A 231 IMLGQSDD-VN---QLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQN 306 (394)
T ss_dssp HHTTCGGG-HH---HHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHH-HH---HHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 98876533 23 345555 356789987775554 7778999999999999999999999976644 555666
Q ss_pred HHHHHHHhhhhcccccHHHHHhHhh
Q psy16066 154 RLMIFETFCRIHQCISIQKESNVID 178 (182)
Q Consensus 154 R~lIfEtYCrIH~~I~I~~la~~L~ 178 (182)
-.-+++.| ++|+++.+|+.+|
T Consensus 307 L~~i~~pY----srIsl~~iA~~l~ 327 (394)
T 3txn_A 307 LCRIIEPY----SRVQVAHVAESIQ 327 (394)
T ss_dssp HHHHHTTC----SEEEHHHHHHHHT
T ss_pred HHHHhHhh----ceeeHHHHHHHHC
Confidence 66666665 8899999999987
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0019 Score=53.18 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=81.5
Q ss_pred hchhHHHHHHHHHHhhhchhHHHHHHHHHHhhcccc-CCCcH---HHHHHHHhhccchHHHHHHHHHHHhhhhcccchhh
Q psy16066 69 MCPHILRYLATAVIINRSKRNALKDLVKVIQQESYT-YKDPI---TEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVA 144 (182)
Q Consensus 69 ~cPhlLRYla~AvI~nr~rr~~lkdlv~vI~qe~y~-Y~DPi---TeFl~~L~v~fDFe~Aq~~L~~~e~v~~~DfFL~~ 144 (182)
.+.+.+.|.+.+.+...........+. .++... +.+|- ...+...|.+.++...++.+......+..|.|+..
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (434)
T 4b4t_Q 257 KACQVLKYMLLSKIMLNLIDDVKNILN---AKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRS 333 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHH---CSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHhHHH---HHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHH
Confidence 455677788777777654433222211 122222 23443 44455668899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccHHHHHhHhh
Q psy16066 145 CLDEFVENARLMIFETFCRIHQCISIQKESNVID 178 (182)
Q Consensus 145 ~~~~f~e~AR~lIfEtYCrIH~~I~I~~la~~L~ 178 (182)
+.+.+..+.+.-....+++-|++|+++.+|+.||
T Consensus 334 ~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~ 367 (434)
T 4b4t_Q 334 HFNALYDTLLESNLCKIIEPFECVEISHISKIIG 367 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhC
Confidence 9999999999999999999999999999999886
No 4
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=75.49 E-value=1.5 Score=31.14 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcccccHHHHHhHhh
Q psy16066 143 VACLDEFVENARLMIFETFCRIHQCISIQKESNVID 178 (182)
Q Consensus 143 ~~~~~~f~e~AR~lIfEtYCrIH~~I~I~~la~~L~ 178 (182)
..+.+.|+|+.... |.+.|++|+++.||+.||
T Consensus 10 ~~L~~~v~E~nl~~----is~~Y~~Isl~~La~ll~ 41 (84)
T 1ufm_A 10 SILDRAVIEHNLLS----ASKLYNNITFEELGALLE 41 (84)
T ss_dssp CCCCHHHHHHHHHH----HHHSCSEEEHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH----HHHhcCeeeHHHHHHHHC
Confidence 34678899998885 555789999999999886
No 5
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=58.55 E-value=67 Score=25.46 Aligned_cols=91 Identities=15% Similarity=0.226 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhhhc--hhHHHHHHHHHHhhccccCCCcHHHHHHHHhhccchHHHHHHHHHHHhhhhcccchhhhHHHH
Q psy16066 72 HILRYLATAVIINRS--KRNALKDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEF 149 (182)
Q Consensus 72 hlLRYla~AvI~nr~--rr~~lkdlv~vI~qe~y~Y~DPiTeFl~~L~v~fDFe~Aq~~L~~~e~v~~~DfFL~~~~~~f 149 (182)
++|.||+.+-++..+ .++.++ .|.- .|.++++.++ -.=|..+-.+.|.+-+ |+|.....-..
T Consensus 54 ~IL~yLIp~~Ll~G~iP~~~ll~---------~~~~-~~y~~L~~Av-r~Gdl~~f~~~l~~~~-----~~f~~~~~~ll 117 (203)
T 3t5x_A 54 MILIYLLPVKMLLGHMPTVELLK---------KYHL-MQFAEVTRAV-SEGNLLLLHEALAKHE-----AFFIRCGIFLI 117 (203)
T ss_dssp HHHHHHHHHHHHTTCEECHHHHH---------HTTC-GGGHHHHHHH-HHTCHHHHHHHHHHTH-----HHHHHHTCHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHhh---------hCch-hHHHHHHHHH-HhCCHHHHHHHHHHhH-----HHHHHCChHHH
Confidence 678999877666532 223332 1221 3667777655 4446666666666544 46665555567
Q ss_pred HHHHHHHHHHHhhhh------cccccHHHHHhHhh
Q psy16066 150 VENARLMIFETFCRI------HQCISIQKESNVID 178 (182)
Q Consensus 150 ~e~AR~lIfEtYCrI------H~~I~I~~la~~L~ 178 (182)
+|..|..+.-+-.|- .++|+++.++.+|.
T Consensus 118 l~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~ 152 (203)
T 3t5x_A 118 LEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALK 152 (203)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 899999988887763 78999999999984
No 6
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.20 E-value=41 Score=29.58 Aligned_cols=107 Identities=12% Similarity=0.133 Sum_probs=53.0
Q ss_pred chhHHHHHHHHHHhhhchhHHHHHHHHHHhhccccCCCcH-HHHHHHHhhccchHHHHHHHHHHHhhhhcccch------
Q psy16066 70 CPHILRYLATAVIINRSKRNALKDLVKVIQQESYTYKDPI-TEFLEHLYVSFDFESAREKLTECTEVLDNDFFL------ 142 (182)
Q Consensus 70 cPhlLRYla~AvI~nr~rr~~lkdlv~vI~qe~y~Y~DPi-TeFl~~L~v~fDFe~Aq~~L~~~e~v~~~DfFL------ 142 (182)
+...|.|.+.+++++..- +.-.++..-+..+...=.-|. .++ ...|.+=+-..-...+..-+..+..|-+.
T Consensus 257 ~~~~L~~~v~~~iLa~~~-~~~~~ll~~~~~~~~~~~l~~~~~L-~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~ 334 (445)
T 4b4t_P 257 WKPVLSHIVYFLVLSPYG-NLQNDLIHKIQNDNNLKKLESQESL-VKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEAN 334 (445)
T ss_dssp HHHHHHHHHHHHHHSSCS-STTHHHHHSHHHHSSCHHHHHHHHH-HHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCS
T ss_pred HHHHHHHHHHHHHhCCCC-chHHHHHHHHhhcccccccHHHHHH-HHHHHhchHhhhHHHHHHHHHHhcccchhhhcchh
Confidence 346788988888887321 011111111212111000122 332 33344433222233444555666666443
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcccccHHHHHhHhh
Q psy16066 143 VACLDEFVENARLMIFETFCRIHQCISIQKESNVID 178 (182)
Q Consensus 143 ~~~~~~f~e~AR~lIfEtYCrIH~~I~I~~la~~L~ 178 (182)
..+...+..+-+.--+-...+.|++|+++.||+.||
T Consensus 335 ~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~ 370 (445)
T 4b4t_P 335 KHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLD 370 (445)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhC
Confidence 233344444444444445566679999999999987
No 7
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=40.50 E-value=1.2e+02 Score=23.62 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=18.3
Q ss_pred hHHHHhhchhHHHHHHHHHHhhh
Q psy16066 63 LNAIQTMCPHILRYLATAVIINR 85 (182)
Q Consensus 63 ln~IQt~cPhlLRYla~AvI~nr 85 (182)
.++----+-|.|||.+-|++.+.
T Consensus 81 ~~~C~RD~~~~LR~itYa~laGd 103 (162)
T 3o18_A 81 KAKCARDIGYYLRMITYCLVAGG 103 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 34566677899999999998874
No 8
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=39.67 E-value=1.1e+02 Score=23.08 Aligned_cols=59 Identities=25% Similarity=0.475 Sum_probs=42.2
Q ss_pred HHHHHHHhhccccCCCcHHHHHHHHhhccchHHHHHHHHHHHhhhhcccchhhhHHHHHHHH-HHHHHHHhh
Q psy16066 92 KDLVKVIQQESYTYKDPITEFLEHLYVSFDFESAREKLTECTEVLDNDFFLVACLDEFVENA-RLMIFETFC 162 (182)
Q Consensus 92 kdlv~vI~qe~y~Y~DPiTeFl~~L~v~fDFe~Aq~~L~~~e~v~~~DfFL~~~~~~f~e~A-R~lIfEtYC 162 (182)
+.+.+.++.+ .|-+.+|+....-+. .++|+.+.+.+.+++.| ++.|+..- |++|||+=.
T Consensus 53 kKI~E~LG~e----Ed~LVdfI~~~L~~~--~~pk~l~~~L~~~LDee------A~~FV~kLWrlLIfe~ea 112 (119)
T 3v53_A 53 KKIIEYIGEE----EATLVDFVCSKVMAH--SSPQSILDDVAMVLDEE------AEVFIVKMWRLLIYETEA 112 (119)
T ss_dssp HHHHHHTC-------CHHHHHHHHHHHTT--CCHHHHHHHHHHHHTTH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCc----hHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHH
Confidence 4455666543 244589988887764 48999999999988876 77888764 889999743
No 9
>2vml_B Phycocyanin beta chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_B*
Probab=37.64 E-value=1.4e+02 Score=23.57 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=18.6
Q ss_pred hHHHHhhchhHHHHHHHHHHhhh
Q psy16066 63 LNAIQTMCPHILRYLATAVIINR 85 (182)
Q Consensus 63 ln~IQt~cPhlLRYla~AvI~nr 85 (182)
.++----+-|.|||.+-|++.+.
T Consensus 79 ~~~C~RD~~~~LR~itYa~lagd 101 (172)
T 2vml_B 79 MAACLRDMEIILRYVSYALLAGD 101 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 55566677899999999999874
No 10
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=31.54 E-value=27 Score=25.97 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=16.4
Q ss_pred hccchHHHHHHHHHHHhhhh
Q psy16066 118 VSFDFESAREKLTECTEVLD 137 (182)
Q Consensus 118 v~fDFe~Aq~~L~~~e~v~~ 137 (182)
-+.||++|.++|+++++.+.
T Consensus 34 k~gdfe~A~~~l~eA~~~l~ 53 (109)
T 3k1s_A 34 KQGKMAEADEAMVKAKEAIN 53 (109)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHH
Confidence 46799999999999976543
No 11
>3l0f_B C-phycocyanin beta chain; photosynthesis, photosystem II, light harvesting proteins, thermostability, bIle pigment; HET: CYC; 1.35A {Thermosynechococcus elongatus} SCOP: a.1.1.3 PDB: 1i7y_B* 1ktp_B* 1on7_B* 1jbo_B* 3o18_B* 3o2c_B* 1phn_B* 3kvs_B* 3brp_B* 1gh0_B* 1cpc_B* 1ha7_B* 2bv8_B* 2uul_D* 2uum_X* 1f99_B* 2uum_B* 2uul_B* 2uun_B* 2uul_H* ...
Probab=31.25 E-value=1.6e+02 Score=23.13 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=17.6
Q ss_pred hHHHHhhchhHHHHHHHHHHhhh
Q psy16066 63 LNAIQTMCPHILRYLATAVIINR 85 (182)
Q Consensus 63 ln~IQt~cPhlLRYla~AvI~nr 85 (182)
.++-.--+-|.|||.+-|++.+.
T Consensus 79 ~~~C~RD~~~~LR~itYa~laGd 101 (172)
T 3l0f_B 79 MAACLRDMEIILRYVTYAILAGD 101 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455556899999999999874
No 12
>1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS, GAP, signal transduction, cancer, growth regulation, GTP hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2
Probab=29.70 E-value=99 Score=26.17 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhh-----------chhHHHHHHHHHHhhcc----c---cCCCcHHHHHHHH
Q psy16066 73 ILRYLATAVIINR-----------SKRNALKDLVKVIQQES----Y---TYKDPITEFLEHL 116 (182)
Q Consensus 73 lLRYla~AvI~nr-----------~rr~~lkdlv~vI~qe~----y---~Y~DPiTeFl~~L 116 (182)
.|||++-|++.-+ +.++.|..+.+++|+=. + .|--|+-+|++.-
T Consensus 192 flRfi~PAIvsP~~fgl~~~~~~~~~~r~L~liaKvLQ~lan~~~f~ke~~m~~lN~fi~~~ 253 (333)
T 1nf1_A 192 FLRFINPAIVSPYEAGILDKKPPPIIERGLKLMSKILQSIANHVLFTKEEHMRPFNDFVKSN 253 (333)
T ss_dssp HHHTHHHHHHCTTCC--------CHHHHHHHTHHHHHHHHHHTCCCCSSTTSGGGHHHHHHT
T ss_pred HHHHHhhhhCCHHHhCCcCCCCCHHHHHhHHHHHHHHHHHHccCCCCchHHHHHHHHHHHHH
Confidence 4788866665321 23567888888887522 1 2445666666554
No 13
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=29.04 E-value=32 Score=26.17 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=16.6
Q ss_pred hccchHHHHHHHHHHHhhhh
Q psy16066 118 VSFDFESAREKLTECTEVLD 137 (182)
Q Consensus 118 v~fDFe~Aq~~L~~~e~v~~ 137 (182)
-+.||++|.++|+++++.+.
T Consensus 49 k~gdfe~A~~~l~eA~e~l~ 68 (120)
T 3l8r_A 49 REKNYILAEQKLQEANDELL 68 (120)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHH
Confidence 46799999999999977543
No 14
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=27.85 E-value=34 Score=25.23 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=16.5
Q ss_pred hccchHHHHHHHHHHHhhhh
Q psy16066 118 VSFDFESAREKLTECTEVLD 137 (182)
Q Consensus 118 v~fDFe~Aq~~L~~~e~v~~ 137 (182)
-+.||++|.++|+++++.+.
T Consensus 32 k~g~fe~A~~~l~eA~~~l~ 51 (105)
T 2e2a_A 32 ENGDFAKADSLVVEAGSCIA 51 (105)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH
Confidence 46799999999999987543
No 15
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=27.68 E-value=35 Score=25.11 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=16.5
Q ss_pred hccchHHHHHHHHHHHhhhh
Q psy16066 118 VSFDFESAREKLTECTEVLD 137 (182)
Q Consensus 118 v~fDFe~Aq~~L~~~e~v~~ 137 (182)
-+-||++|.++|+++++.+.
T Consensus 30 k~g~fe~A~~~l~eA~~~l~ 49 (103)
T 1wcr_A 30 KQGDFAAAKAMMDQSRMALN 49 (103)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH
Confidence 46799999999999987543
No 16
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=27.63 E-value=50 Score=27.03 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhhhcccccHHHHHhHhh
Q psy16066 147 DEFVENARLMIFETFCRIHQCISIQKESNVID 178 (182)
Q Consensus 147 ~~f~e~AR~lIfEtYCrIH~~I~I~~la~~L~ 178 (182)
..|.++-|..|+..=-+-|++|+++++++.||
T Consensus 132 ~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg 163 (226)
T 1rz4_A 132 TGFEDSVRKFICHVVGITYQHIDRWLLAEMLG 163 (226)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEECHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHc
Confidence 45889999999999999999999999999996
No 17
>1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G*
Probab=27.03 E-value=1.2e+02 Score=25.66 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=19.2
Q ss_pred HHHHHHHHHhh-----------hchhHHHHHHHHHHhhc
Q psy16066 74 LRYLATAVIIN-----------RSKRNALKDLVKVIQQE 101 (182)
Q Consensus 74 LRYla~AvI~n-----------r~rr~~lkdlv~vI~qe 101 (182)
|||++-|++-- .+.++.|..+.+++|+=
T Consensus 189 lRfi~PAIvsP~~fgl~~~~p~~~~rr~L~lIaKvLQ~l 227 (334)
T 1wer_A 189 LRLICPAILNPRMFNIISDSPSPIAARTLILVAKSVQNL 227 (334)
T ss_dssp TTTHHHHHHCGGGGTSCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhCChHhcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 78887666632 13467888888888763
No 18
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=25.42 E-value=59 Score=25.32 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=20.1
Q ss_pred ChhhHHHHhhhchHHHHHHHHHHHHc
Q psy16066 5 RPHYLNAIQTMCPHILRYLATAVIIN 30 (182)
Q Consensus 5 ~~~ylnaiQt~~p~lLRYl~~avi~~ 30 (182)
.++-..+---.+-|.|||.+-|++.+
T Consensus 75 ~~~~~~~ClRD~~~~LRyitYa~lag 100 (162)
T 2vml_A 75 GDTNQAKCARDISHYLRFITYSLVAG 100 (162)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455556667889999999999986
No 19
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=24.94 E-value=71 Score=25.74 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccHHHHHhHhh
Q psy16066 145 CLDEFVENARLMIFETFCRIHQCISIQKESNVID 178 (182)
Q Consensus 145 ~~~~f~e~AR~lIfEtYCrIH~~I~I~~la~~L~ 178 (182)
..+-|++.-|.-+..+=||-+.+|+++++++.|+
T Consensus 168 ~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~ 201 (229)
T 4b0z_A 168 FMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLY 201 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhC
Confidence 4678888999999999999999999999999986
No 20
>1xg0_C B-phycoerythrin beta chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: a.1.1.3 PDB: 1qgw_C* 1xf6_C* 1lia_B* 1eyx_B* 2vjh_B* 1b8d_B*
Probab=24.48 E-value=62 Score=25.73 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=20.4
Q ss_pred ChhhHHHHhhhchHHHHHHHHHHHHc
Q psy16066 5 RPHYLNAIQTMCPHILRYLATAVIIN 30 (182)
Q Consensus 5 ~~~ylnaiQt~~p~lLRYl~~avi~~ 30 (182)
.|+-..+---.+.|.|||.+-|++.+
T Consensus 75 ~~~r~~~ClRD~~~~LRyitYa~laG 100 (177)
T 1xg0_C 75 TNRRMAACLRDGEIILRYVSYALLSG 100 (177)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455666667889999999999986
No 21
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=24.27 E-value=37 Score=19.56 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=11.1
Q ss_pred hhhHHHHHHHhhh
Q psy16066 35 NALKDLVKVIQQV 47 (182)
Q Consensus 35 ~~lkdlVrvIqqE 47 (182)
+.|||+++.+||=
T Consensus 2 nfMkDvlql~qQy 14 (26)
T 1kdl_A 2 NFMKDVLRLIEQY 14 (26)
T ss_dssp THHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 5799999999974
No 22
>2c7l_B Phycoerythrocyanin beta chain; phycoviolobilin, phycocyanobilin, bIle pigment, chromophore, electron transport, photosynthesis; HET: BLA CYC; 2.85A {Mastigocladus laminosus} PDB: 2c7k_B* 2c7j_B*
Probab=24.01 E-value=65 Score=25.47 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=20.7
Q ss_pred ChhhHHHHhhhchHHHHHHHHHHHHcc
Q psy16066 5 RPHYLNAIQTMCPHILRYLATAVIINR 31 (182)
Q Consensus 5 ~~~ylnaiQt~~p~lLRYl~~avi~~~ 31 (182)
.++-..+---.+-|.|||.+-|++.+-
T Consensus 75 ~~~~~~~ClRD~~~~LRyitYa~lagd 101 (172)
T 2c7l_B 75 HHRNQAACIRDLGFILRYVTYSVLAGD 101 (172)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555666677899999999999873
No 23
>1kn1_A Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 3dbj_A* 2v8a_A* 1b33_A* 2vjt_A* 1all_A*
Probab=23.62 E-value=67 Score=25.01 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=19.9
Q ss_pred hhhHHHHhhhchHHHHHHHHHHHHc
Q psy16066 6 PHYLNAIQTMCPHILRYLATAVIIN 30 (182)
Q Consensus 6 ~~ylnaiQt~~p~lLRYl~~avi~~ 30 (182)
++-..+---.+-|.|||.+-|++.+
T Consensus 74 ~~~~~~ClRD~~~~LRyitYa~lag 98 (160)
T 1kn1_A 74 EEMTATCLRDLDYYLRLVTYGIVSG 98 (160)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455566677889999999999986
No 24
>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} SCOP: a.234.1.1
Probab=23.21 E-value=1.4e+02 Score=25.89 Aligned_cols=47 Identities=26% Similarity=0.435 Sum_probs=36.5
Q ss_pred CCcHHHHHHHHh-------hccchHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHH
Q psy16066 106 KDPITEFLEHLY-------VSFDFESAREKLTECTEVLDNDFFLVACLDEFVENARL 155 (182)
Q Consensus 106 ~DPiTeFl~~L~-------v~fDFe~Aq~~L~~~e~v~~~DfFL~~~~~~f~e~AR~ 155 (182)
.|-+|.|-.+++ -+=||..||+ .|++.+.+||+=.++.+.|+.....
T Consensus 49 ~deLt~fy~n~l~ki~~lvk~Kdfk~Ale---~~eEELdtpYlp~~lv~~Fqsl~~~ 102 (306)
T 1td6_A 49 GDELTTFFLHQFDKVMELVKQKDFKTAQS---RCEEELAAPYLPKPLVSFFQSLLQL 102 (306)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHhcCCcccHHHHHHHHHHHHH
Confidence 477888866544 4678998876 5899999999999999988876433
No 25
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=23.09 E-value=70 Score=24.88 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=19.4
Q ss_pred hhhHHHHhhhchHHHHHHHHHHHHc
Q psy16066 6 PHYLNAIQTMCPHILRYLATAVIIN 30 (182)
Q Consensus 6 ~~ylnaiQt~~p~lLRYl~~avi~~ 30 (182)
++-..+---.+-|.|||.+-|++.+
T Consensus 75 ~~r~~~ClRD~~~~LR~itYa~lag 99 (161)
T 1kn1_B 75 TRRYAACIRDLDYYLRYATYAMLAG 99 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4445555567789999999999986
No 26
>1xg0_C B-phycoerythrin beta chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: a.1.1.3 PDB: 1qgw_C* 1xf6_C* 1lia_B* 1eyx_B* 2vjh_B* 1b8d_B*
Probab=21.90 E-value=2.4e+02 Score=22.20 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=18.9
Q ss_pred hhhHHHHhhchhHHHHHHHHHHhhh
Q psy16066 61 HYLNAIQTMCPHILRYLATAVIINR 85 (182)
Q Consensus 61 ~Yln~IQt~cPhlLRYla~AvI~nr 85 (182)
.-.++----+-|+|||.+-|++.+.
T Consensus 77 ~r~~~ClRD~~~~LRyitYa~laGd 101 (177)
T 1xg0_C 77 RRMAACLRDGEIILRYVSYALLSGD 101 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455555666899999999999874
No 27
>2c7l_B Phycoerythrocyanin beta chain; phycoviolobilin, phycocyanobilin, bIle pigment, chromophore, electron transport, photosynthesis; HET: BLA CYC; 2.85A {Mastigocladus laminosus} PDB: 2c7k_B* 2c7j_B*
Probab=21.65 E-value=2.9e+02 Score=21.58 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=19.4
Q ss_pred hhhhHHHHhhchhHHHHHHHHHHhhh
Q psy16066 60 PHYLNAIQTMCPHILRYLATAVIINR 85 (182)
Q Consensus 60 ~~Yln~IQt~cPhlLRYla~AvI~nr 85 (182)
+.-.++----+-|.|||.+-|++.+.
T Consensus 76 ~~~~~~ClRD~~~~LRyitYa~lagd 101 (172)
T 2c7l_B 76 HRNQAACIRDLGFILRYVTYSVLAGD 101 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34445555566899999999999874
No 28
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=21.35 E-value=85 Score=24.74 Aligned_cols=32 Identities=9% Similarity=0.194 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHhhhchhHHHHHHhCChhhhHH
Q psy16066 34 RNALKDLVKVIQQVSRDLIIDMFLNRPHYLNA 65 (182)
Q Consensus 34 ~~~lkdlVrvIqqEgrd~i~d~Fl~~~~Yln~ 65 (182)
+.-+..-..++..+|.++.+|.+++|+.|+++
T Consensus 94 q~Ei~~~~~i~a~~G~~a~IDslidS~EY~~~ 125 (148)
T 3nph_B 94 QSEIAFHTDLYHQGGYEAEINSYIDSVEYTEN 125 (148)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHhCcHHHHHH
Confidence 56677778888999999999999999999875
No 29
>2ky4_A Phycobilisome linker polypeptide; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium; NMR {Nostoc SP}
Probab=20.08 E-value=96 Score=24.42 Aligned_cols=32 Identities=9% Similarity=0.284 Sum_probs=27.6
Q ss_pred hhhhHHHHHHHhhhchhHHHHHHhCChhhhHH
Q psy16066 34 RNALKDLVKVIQQVSRDLIIDMFLNRPHYLNA 65 (182)
Q Consensus 34 ~~~lkdlVrvIqqEgrd~i~d~Fl~~~~Yln~ 65 (182)
+.-+..-..++..+|.++.+|..++|+.|+++
T Consensus 97 q~Ei~~~~~ila~~G~~a~IDslidS~EY~~~ 128 (149)
T 2ky4_A 97 QAEIRKYNQILATQGIRAFINALVNSQEYNEV 128 (149)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHhCcHHHHHH
Confidence 45677778888999999999999999999875
Done!