Query psy16067
Match_columns 1386
No_of_seqs 659 out of 2501
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 20:00:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2408|consensus 100.0 2E-106 4E-111 998.6 36.6 422 608-1196 256-716 (719)
2 PF03098 An_peroxidase: Animal 100.0 1E-102 3E-107 952.7 19.7 396 611-1171 98-530 (530)
3 PLN02283 alpha-dioxygenase 100.0 1.9E-82 4.2E-87 776.6 29.1 357 691-1157 204-596 (633)
4 COG0326 HtpG Molecular chapero 100.0 6.2E-42 1.3E-46 410.7 12.8 181 1151-1373 32-214 (623)
5 KOG0020|consensus 100.0 1.7E-41 3.7E-46 386.1 9.8 183 1154-1378 103-291 (785)
6 KOG0019|consensus 100.0 7.4E-41 1.6E-45 393.3 8.0 187 1152-1383 63-259 (656)
7 PTZ00130 heat shock protein 90 100.0 9.3E-39 2E-43 395.1 14.0 153 1224-1376 125-279 (814)
8 PTZ00272 heat shock protein 83 100.0 1.4E-36 3.1E-41 376.2 15.1 152 1224-1375 62-213 (701)
9 KOG2408|consensus 100.0 2.9E-36 6.3E-41 374.8 9.1 230 177-417 448-685 (719)
10 PLN02283 alpha-dioxygenase 100.0 6E-32 1.3E-36 332.6 7.7 128 280-413 469-598 (633)
11 PF03098 An_peroxidase: Animal 100.0 1.6E-31 3.6E-36 327.8 4.8 129 282-416 393-522 (530)
12 PRK14083 HSP90 family protein; 100.0 1.1E-29 2.4E-34 312.3 15.0 146 1223-1371 51-198 (601)
13 PRK05218 heat shock protein 90 99.9 8.6E-28 1.9E-32 298.0 14.1 145 1223-1369 62-210 (613)
14 KOG0020|consensus 98.8 3E-09 6.4E-14 124.2 4.7 80 1-80 690-781 (785)
15 PF13589 HATPase_c_3: Histidin 98.7 6.3E-09 1.4E-13 107.1 2.7 78 1225-1310 22-104 (137)
16 TIGR00585 mutl DNA mismatch re 98.6 7.8E-08 1.7E-12 112.0 9.3 138 1224-1369 41-193 (312)
17 KOG0019|consensus 98.2 5.2E-07 1.1E-11 109.3 2.3 44 1-45 592-635 (656)
18 PF00183 HSP90: Hsp90 protein; 97.8 9.9E-06 2.1E-10 100.6 2.0 52 1-52 441-501 (531)
19 PRK04184 DNA topoisomerase VI 97.7 8.7E-05 1.9E-09 91.9 8.0 118 1234-1361 75-203 (535)
20 TIGR01052 top6b DNA topoisomer 97.6 0.00012 2.5E-09 89.9 8.0 127 1224-1360 52-193 (488)
21 PTZ00272 heat shock protein 83 97.5 6.6E-05 1.4E-09 95.6 3.5 75 1-76 614-699 (701)
22 PRK00095 mutL DNA mismatch rep 97.3 0.00043 9.3E-09 88.1 7.6 132 1221-1360 38-180 (617)
23 PRK14868 DNA topoisomerase VI 97.2 0.00049 1.1E-08 87.3 7.1 125 1224-1359 70-207 (795)
24 COG1389 DNA topoisomerase VI, 97.0 0.0011 2.4E-08 79.2 6.7 124 1231-1364 70-206 (538)
25 COG0323 MutL DNA mismatch repa 96.9 0.0016 3.5E-08 83.0 7.5 129 1214-1359 32-181 (638)
26 PRK05559 DNA topoisomerase IV 96.6 0.0044 9.5E-08 79.1 8.1 141 1223-1371 59-212 (631)
27 smart00433 TOP2c Topoisomerase 96.5 0.007 1.5E-07 76.9 9.0 138 1223-1370 23-175 (594)
28 PRK14867 DNA topoisomerase VI 96.3 0.0061 1.3E-07 77.3 6.6 127 1224-1359 60-198 (659)
29 PRK14939 gyrB DNA gyrase subun 96.3 0.014 3.1E-07 75.4 10.0 136 1223-1371 59-210 (756)
30 PRK05644 gyrB DNA gyrase subun 96.0 0.019 4.1E-07 73.6 9.2 138 1223-1371 59-210 (638)
31 TIGR01059 gyrB DNA gyrase, B s 96.0 0.017 3.6E-07 74.4 8.4 136 1223-1370 52-202 (654)
32 TIGR01055 parE_Gneg DNA topois 95.9 0.015 3.2E-07 74.3 7.8 140 1224-1371 53-205 (625)
33 PF02518 HATPase_c: Histidine 95.9 0.0039 8.4E-08 61.1 1.8 64 1223-1297 25-90 (111)
34 PTZ00130 heat shock protein 90 95.9 0.0047 1E-07 79.6 2.9 52 1-52 702-762 (814)
35 COG0187 GyrB Type IIA topoisom 92.5 0.7 1.5E-05 58.4 11.0 142 1224-1373 59-213 (635)
36 TIGR01058 parE_Gpos DNA topois 92.4 0.51 1.1E-05 60.8 10.0 138 1224-1371 57-208 (637)
37 PTZ00109 DNA gyrase subunit b; 89.9 1.9 4.1E-05 57.0 11.5 143 1224-1371 152-358 (903)
38 KOG1979|consensus 89.5 0.94 2E-05 56.4 7.9 135 1214-1360 36-186 (694)
39 PLN03237 DNA topoisomerase 2; 88.4 1.2 2.6E-05 61.4 8.5 140 1224-1371 101-260 (1465)
40 KOG1978|consensus 87.0 0.6 1.3E-05 59.2 4.3 111 1215-1336 30-146 (672)
41 PRK10755 sensor protein BasS/P 86.9 0.49 1.1E-05 55.7 3.3 82 1223-1339 267-350 (356)
42 smart00387 HATPase_c Histidine 86.6 0.48 1E-05 44.3 2.5 60 1225-1295 29-88 (111)
43 PLN03128 DNA topoisomerase 2; 86.6 2.4 5.2E-05 57.9 9.7 140 1224-1371 76-235 (1135)
44 PTZ00108 DNA topoisomerase 2-l 85.1 2.7 5.8E-05 58.2 9.2 139 1224-1370 84-241 (1388)
45 PRK10549 signal transduction h 84.9 0.7 1.5E-05 56.2 3.4 57 1223-1289 372-430 (466)
46 PHA02569 39 DNA topoisomerase 84.2 3.1 6.8E-05 53.5 8.8 136 1224-1371 71-224 (602)
47 PRK15347 two component system 83.3 0.65 1.4E-05 61.7 2.4 33 1223-1255 532-566 (921)
48 PRK10604 sensor protein RstB; 83.0 0.67 1.5E-05 56.6 2.2 57 1222-1288 336-394 (433)
49 PRK11100 sensory histidine kin 80.7 1.7 3.7E-05 52.6 4.5 31 1224-1254 389-421 (475)
50 TIGR02916 PEP_his_kin putative 79.9 1.2 2.5E-05 58.0 2.8 34 1223-1256 599-634 (679)
51 PRK09470 cpxA two-component se 79.1 1.5 3.3E-05 53.0 3.4 34 1223-1256 371-406 (461)
52 PRK09303 adaptive-response sen 74.1 2.7 5.8E-05 50.6 3.6 58 1223-1292 292-352 (380)
53 PRK11466 hybrid sensory histid 73.3 1.6 3.6E-05 58.1 1.6 32 1223-1254 580-613 (914)
54 cd00075 HATPase_c Histidine ki 72.6 3.8 8.3E-05 37.5 3.5 64 1224-1299 22-91 (103)
55 TIGR01386 cztS_silS_copS heavy 72.3 3.4 7.3E-05 49.9 3.8 34 1223-1256 373-408 (457)
56 PRK10618 phosphotransfer inter 72.1 6.3 0.00014 53.1 6.5 35 1222-1256 583-622 (894)
57 PRK10815 sensor protein PhoQ; 70.0 2.9 6.4E-05 52.2 2.7 30 1225-1254 400-429 (485)
58 TIGR02956 TMAO_torS TMAO reduc 68.8 3.7 8.1E-05 55.1 3.5 32 1223-1254 598-632 (968)
59 TIGR02938 nifL_nitrog nitrogen 68.2 4.8 0.0001 48.6 4.0 35 1223-1257 411-447 (494)
60 PRK10337 sensor protein QseC; 67.5 3.5 7.7E-05 50.0 2.6 32 1223-1256 372-403 (449)
61 COG0326 HtpG Molecular chapero 67.2 2.9 6.3E-05 53.3 1.8 66 444-510 147-212 (623)
62 PRK10841 hybrid sensory kinase 66.1 3.5 7.6E-05 55.7 2.4 33 1223-1255 581-615 (924)
63 PRK11107 hybrid sensory histid 64.4 4.7 0.0001 53.7 3.1 48 1235-1292 446-493 (919)
64 PRK11091 aerobic respiration c 64.1 3.9 8.5E-05 53.8 2.2 32 1223-1254 417-451 (779)
65 KOG1977|consensus 60.9 3.5 7.7E-05 52.4 0.9 33 1219-1251 35-67 (1142)
66 KOG1712|consensus 53.4 3.3 7.2E-05 44.4 -0.9 58 313-374 26-90 (183)
67 PRK11006 phoR phosphate regulo 53.2 10 0.00022 46.2 3.0 33 1223-1255 337-371 (430)
68 PRK14083 HSP90 family protein; 50.6 8.1 0.00018 49.8 1.7 37 1-41 541-579 (601)
69 PRK10490 sensor protein KdpD; 48.9 12 0.00027 50.5 3.1 34 1223-1256 798-833 (895)
70 PRK13557 histidine kinase; Pro 48.0 13 0.00027 46.0 2.8 21 1235-1255 326-346 (540)
71 PRK13837 two-component VirA-li 46.3 25 0.00055 46.9 5.4 20 1235-1254 609-628 (828)
72 PRK09467 envZ osmolarity senso 44.9 18 0.00039 43.7 3.4 38 1219-1256 345-384 (435)
73 PRK09959 hybrid sensory histid 42.3 15 0.00032 51.0 2.3 21 1235-1255 866-886 (1197)
74 PRK15053 dpiB sensor histidine 38.7 20 0.00044 44.8 2.6 33 1223-1255 456-490 (545)
75 COG3920 Signal transduction hi 36.6 16 0.00034 41.4 1.1 27 1222-1248 144-174 (221)
76 PRK11360 sensory histidine kin 36.5 26 0.00056 43.5 3.0 35 1223-1257 520-557 (607)
77 PRK13560 hypothetical protein; 35.6 21 0.00046 46.5 2.1 38 1211-1248 720-762 (807)
78 TIGR02966 phoR_proteo phosphat 34.8 34 0.00074 39.0 3.4 35 1223-1257 249-285 (333)
79 TIGR01925 spIIAB anti-sigma F 34.2 28 0.00061 35.5 2.4 24 1223-1246 62-87 (137)
80 PRK03660 anti-sigma F factor; 33.8 31 0.00068 35.5 2.6 25 1223-1247 62-88 (146)
81 COG0642 BaeS Signal transducti 33.5 33 0.00072 38.3 3.0 30 1222-1251 246-277 (336)
82 COG0643 CheA Chemotaxis protei 30.6 27 0.00058 46.1 1.8 103 1223-1338 464-572 (716)
83 COG2972 Predicted signal trans 25.4 1.4E+02 0.003 37.3 6.8 30 1223-1252 374-405 (456)
84 PRK10364 sensor protein ZraS; 21.9 74 0.0016 39.1 3.4 32 1224-1255 369-402 (457)
85 TIGR03785 marine_sort_HK prote 20.7 79 0.0017 41.8 3.4 61 1223-1293 617-679 (703)
86 COG4251 Bacteriophytochrome (l 20.5 82 0.0018 40.8 3.3 60 1220-1291 654-715 (750)
No 1
>KOG2408|consensus
Probab=100.00 E-value=2e-106 Score=998.60 Aligned_cols=422 Identities=37% Similarity=0.584 Sum_probs=354.3
Q ss_pred CCCCCCCccccCCCCCCccccCCccccccccccccccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHhhcccccccCc
Q psy16067 608 RSTSGNCRPILIPSNDDFYSQFNRRCLEYKRSLAINCSVGALQPDKICPGRESNPRPSAYKADVLATKLIRLKNFFFTDV 687 (1386)
Q Consensus 608 ~~~~p~C~pI~vp~~Dp~~~~~~~~Cm~f~RS~~~~c~~G~~~~~~~~~~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1386)
...+|.|+||.||++||+|...+ +||+|+||+++ |..|+ .
T Consensus 256 ~~~~p~C~pi~~p~~dp~~~~~~-~C~~f~Rs~~~-~~~~~-------~------------------------------- 295 (719)
T KOG2408|consen 256 QLPSPPCFPIKIPPNDPYFPSNQ-RCLPFVRSLPA-CGSGY-------N------------------------------- 295 (719)
T ss_pred cCCCCcccceecCCCCCccCCcc-cceeceecCCC-ccccc-------c-------------------------------
Confidence 45889999999999999998766 99999999997 44321 0
Q ss_pred cccccccccccCcccCCcCCCCCHHhhHhhhcCCC--Cceeeec---cCCccCCCCCCC--CCCCCCC---CccccccCC
Q psy16067 688 ETCTFQIVQSTHFIDVSFMYGSHPDKARELRSLSR--GKLRVRE---VNGRTFMPTGDP--SNCVNAS---SNICYDAGD 757 (1386)
Q Consensus 688 ~~~reQiNq~TsfLD~S~VYGSs~~~a~~LRsf~~--G~Lk~~~---~~g~~llP~~~~--~~C~~~~---~~~Cf~aGD 757 (1386)
-..|+|+||+|||||+|+||||+++++++||.|++ |+|+++. .+++.++|...+ ..|.... ...||.|||
T Consensus 296 ~~~reQlNq~T~~lD~S~IYGss~~~~~~lR~f~~~~g~l~~~~~~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~aGD 375 (719)
T KOG2408|consen 296 LGPREQLNQLTSFLDASVIYGSSDEDARKLRLFKDGKGLLRVDTGLFENGRPLLPFSTDPPNSCRSKPPGAPKPCFTAGD 375 (719)
T ss_pred CChhhhhccccccccchhccCCCHHHHHHHhcccCcccceeecccccccCcccCCCCCCCCccccccCCCCCCcccccCc
Confidence 01379999999999999999999999999999998 7888773 468889998643 4787654 368999999
Q ss_pred ccccccchhhhHHHhHhhhchHHHHHHHhhCCCCCCchhHHHHHhHhhhhheeeeeeecccccccccccccccchhhhhh
Q psy16067 758 IRVNQQLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPILIGDIRVNQQLDLAVS 837 (1386)
Q Consensus 758 ~R~Ne~pgLtalhtlflReHNrIA~~L~~iNP~W~~~De~lfq~AR~i~ia~~q~I~~~e~LP~llGD~R~NEn~~L~al 837 (1386)
.|+|++|+|++|||+|+|||||||.+|+.+||||+
T Consensus 376 ~R~~~~pgL~~~hti~lREHNRiA~~Lk~~np~W~--------------------------------------------- 410 (719)
T KOG2408|consen 376 ERANEQPGLAALHTLFLREHNRIATELKALNPHWS--------------------------------------------- 410 (719)
T ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHhhCCCCc---------------------------------------------
Confidence 99999999999999999999999999999999998
Q ss_pred hhHHHHHhHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhhhhhhhchhhhhhccchhhhcCCCCCCCCCccCCCCCCC
Q psy16067 838 QTVWLRFHNYVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPILIGESYTKDVGLSPTSSGYFQGYDPEVN 917 (1386)
Q Consensus 838 hTlflReHNriA~~L~~~Np~Ws~~DE~LFQEARrIViA~~QhItYnEfLP~LLG~~~~~~~gL~~~~~G~y~gYd~~vd 917 (1386)
||+|||||||||+|++|||||+||||.+||... ... .|+|.||
T Consensus 411 -------------------------dE~lfQeaRkI~~A~~q~Ity~e~LP~ilG~~~------~~~-~g~~~gY----- 453 (719)
T KOG2408|consen 411 -------------------------DERLFQEARKIVGAQVQHITYNEYLPKLLGAPL------KVS-LGGYRGY----- 453 (719)
T ss_pred -------------------------HHHHHHHHHHHHHHHHhhhhHHhhhhhhcCccc------ccC-CccccCc-----
Confidence 899999999999999999999999999999211 111 2555555
Q ss_pred CcchhhhcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHhhhhccccccCccceeecccccccCC---CCCc
Q psy16067 918 PSTLADFAAGAFRGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAFRGLHSLIPGTIKLVNERRVTNQ---ELPF 994 (1386)
Q Consensus 918 p~i~neFAtaAfR~hs~~~~~~l~~~~~~~~~~Yd~~vnpsi~~EFatAAfRfgHSlI~~~i~~~~~~~~~~~---~~~l 994 (1386)
+|++||+|++||++|||||||++|++.+.+++.++.... .+++
T Consensus 454 ----------------------------------~~~~dp~IsneFataAfRfgHsli~~~~~~l~~~~~~~~~~~~l~~ 499 (719)
T KOG2408|consen 454 ----------------------------------DPNVDPTISNEFATAAFRFGHSLIPPFFQRLDENFQPIGEVVNLPL 499 (719)
T ss_pred ----------------------------------CCCCChhhhhhhhHHHHhhhcccCchhhhhhcccCcccccccCchh
Confidence 555566677788899999999999999999999886443 5788
Q ss_pred cccccCcccccccccchhhhhhhhhhhhhhhc-CCCCCHHHHhhccccCCCCccccccccccCcc----------hhhhH
Q psy16067 995 SSTMQHPGDILEVMDVFDSTLRGLTNQLQQYQ-DRFITEQTIDFLFRVGSLSLEKVIVDLVGLTL----------GFFYL 1063 (1386)
Q Consensus 995 ~~~~~~p~~il~~~~~~d~llrGl~~q~~~~~-D~~i~~~l~n~LF~~~~~~~~~~g~DL~~lni----------~n~~r 1063 (1386)
++.|++|+.++ ..+++|+++|||+.++++.. |++++.+++++||...... ..+||++||| ||.||
T Consensus 500 ~~~~~~~~~i~-~~ggid~llrGl~~~~~~~~~d~~~~~~i~~~lf~~~~~~---~~~DL~ainIQRgRDhGlp~Yn~yR 575 (719)
T KOG2408|consen 500 HDAFFNPWLIL-NEGGIDPLLRGLTTQPAKMPDDQLLNGEITERLFVKTDED---GELDLAALNIQRGRDHGLPPYNEYR 575 (719)
T ss_pred hhhhcchhhhh-hccChhHHHHHHHhchhhcccchhcCHHHHHHHhhhcCcc---cccchhhhhhhccccCCCCCHHHHH
Confidence 89999998655 46799999999999999999 9999999999999854321 1278888877 78999
Q ss_pred HhhCCC-------------HHHHHHHHHhcCCCCccccceeeecccccCCCCcchHHHHHHHHHHHHhhcCCcccccCCC
Q psy16067 1064 WYCGGF-------------LLQVTRLSQVYRGVNDIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPP 1130 (1386)
Q Consensus 1064 ~~cgL~-------------~~~i~~L~~lY~~vdDIDL~vGgLaE~p~~G~~vGPTf~CII~~QF~rLr~GDRFwYEn~~ 1130 (1386)
++|||+ .+++++|+.+|++|||||||||+|+|+|++|++|||||+|||++||+|+|+||||||||
T Consensus 576 ~~cgL~~~~s~edL~~~i~~~~~~kl~~lY~~~ddiDL~vG~~~E~~~~g~~vGPTl~cii~~Qf~r~r~gDRf~yen-- 653 (719)
T KOG2408|consen 576 KFCGLSPATSFEDLSDEIEPEIINKLRTLYGTPDDIDLYVGLLLEKPLPGGLVGPTLACIIAEQFLRLRDGDRFWYEN-- 653 (719)
T ss_pred HHcCCCCCCCHHHhhhhhhHHHHHHHHHhcCCchhhcccccccccccCCCceecccHHHHHHHHHHHHhccCceeecC--
Confidence 999996 13578999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcChhhHHHHHhhccccceecccCCcccccc-CCCCCCCCCCC-CCCCCCCCCCCCCCCCCcc
Q psy16067 1131 ATNPGAFTPGKQLTLTSLTSLASLCIFSCFQALDKI-RPSNHPGPNSL-MDQPCRGGAAPGPGDGDVV 1196 (1386)
Q Consensus 1131 ~~~p~~FT~~qql~~irk~sla~l~~~~~sDaiDkI-Qps~f~~pn~l-~nv~C~~~~~~~~~~~~~~ 1196 (1386)
.+|+.||++ ||++|||+|||+|+|.+ ...+.++ +.++|..++.. .-++|. .||.+++..|.
T Consensus 654 -~~~~~Ft~~-QL~ei~k~sLariiC~N-~~~~~~~~~~~~f~~~~~~~~~~~c~--~ip~~dl~~w~ 716 (719)
T KOG2408|consen 654 -FNPGVFTPE-QLEEIRKVSLARIICDN-GTKITKVSRFDVFDFPDAPNDPVPCS--SIPGLDLNAWR 716 (719)
T ss_pred -CCCCccCHH-HHHHHHHhhchheeecC-CcccccccccCCccccccCCCCCCcc--ccchhhhhhhh
Confidence 279999997 89999999999987653 2334444 55888754443 347894 59999998774
No 2
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=1.5e-102 Score=952.73 Aligned_cols=396 Identities=39% Similarity=0.684 Sum_probs=309.7
Q ss_pred CCCCccccCCCCCCccccCCccccccccccccccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHhhcccccccCcccc
Q psy16067 611 SGNCRPILIPSNDDFYSQFNRRCLEYKRSLAINCSVGALQPDKICPGRESNPRPSAYKADVLATKLIRLKNFFFTDVETC 690 (1386)
Q Consensus 611 ~p~C~pI~vp~~Dp~~~~~~~~Cm~f~RS~~~~c~~G~~~~~~~~~~~~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1386)
|++|+||+||.+||+|... .+||+|+||.++ |..| ..|. .+
T Consensus 98 ~~~c~~I~ip~~Dp~~~~~-~~c~~~~Rs~~~-~~~~-----~~~~--------------------------------~~ 138 (530)
T PF03098_consen 98 HPECFPIPIPPDDPFYRPF-VRCMPFTRSAPA-PDPG-----QSCS--------------------------------LP 138 (530)
T ss_dssp BTTB--EE--TTEHHHHHT-TSEE--B-B-BS-STSS-----S-SS--------------------------------SS
T ss_pred CCCccccccCCCcccccCC-CCCccccccccc-ccCC-----CCCc--------------------------------cc
Confidence 7899999999999999877 899999999986 2221 1121 13
Q ss_pred ccccccccCcccCCcCCCCCHHhhHhhhc-CCCCceeeec-----cCCccCCCCCCCC---CCCCCCCccccccCCcccc
Q psy16067 691 TFQIVQSTHFIDVSFMYGSHPDKARELRS-LSRGKLRVRE-----VNGRTFMPTGDPS---NCVNASSNICYDAGDIRVN 761 (1386)
Q Consensus 691 reQiNq~TsfLD~S~VYGSs~~~a~~LRs-f~~G~Lk~~~-----~~g~~llP~~~~~---~C~~~~~~~Cf~aGD~R~N 761 (1386)
|+|+|++|||||||+||||++++++.||+ +++|+|++.. .++..+||...+. .| .||.+||.|+|
T Consensus 139 req~N~~T~~lD~S~vYGs~~~~~~~LR~~~~~G~L~~~~~~~~~~~~~~~lp~~~~~~~~~~------~~f~~GD~R~n 212 (530)
T PF03098_consen 139 REQINQATSYLDLSQVYGSSEEQARRLRSSFKGGKLKSDNGEFPPPNGGGLLPSDDPPTDSGC------RCFLAGDPRVN 212 (530)
T ss_dssp TTBEE-STSSSS-HHHH-SSHHHHHHTBESSTTTEB--ETSSEEBBTTBES--B-TSCSSGHH------GSB-TSSTTTT
T ss_pred hhhhccccceeecccccCCCHHHHHHhhcchhhhhhhcccccccccCCCCCCCCCcccccccc------ccccccccccc
Confidence 79999999999999999999999999999 9999999832 4677888876421 23 69999999999
Q ss_pred ccchhhhHHHhHhhhchHHHHHHHhhCCCCCCchhHHHHHhHhhhhheeeeeeecccccccccccccccchhhhhhhhHH
Q psy16067 762 QQLDLAVSQTVWLRFHNYVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPILIGDIRVNQQLDLAVSQTVW 841 (1386)
Q Consensus 762 e~pgLtalhtlflReHNrIA~~L~~iNP~W~~~De~lfq~AR~i~ia~~q~I~~~e~LP~llGD~R~NEn~~L~alhTlf 841 (1386)
|+|+|++|||+|+|||||||++|+++||+|+
T Consensus 213 e~~~l~~lhtlflReHNria~~L~~~np~w~------------------------------------------------- 243 (530)
T PF03098_consen 213 ENPGLTALHTLFLREHNRIADELKKINPHWD------------------------------------------------- 243 (530)
T ss_dssp SBHHHHHHHHHHHHHHHHHHHHHHHHSTTS--------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-------------------------------------------------
Confidence 9999999999999999999999999999887
Q ss_pred HHHhHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhhhhhhhchhhhhhccchhhhcCCCCCCCCCccCCCCCCCCcch
Q psy16067 842 LRFHNYVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPILIGESYTKDVGLSPTSSGYFQGYDPEVNPSTL 921 (1386)
Q Consensus 842 lReHNriA~~L~~~Np~Ws~~DE~LFQEARrIViA~~QhItYnEfLP~LLG~~~~~~~gL~~~~~G~y~gYd~~vdp~i~ 921 (1386)
||+||||||+||+|+||||||+||||+|||.+.|+.+.+.+...|+|.+|+
T Consensus 244 ---------------------de~lFqeAR~iv~a~~Q~Ivy~E~LP~llG~~~~~~~~~~~~~~g~~~~y~-------- 294 (530)
T PF03098_consen 244 ---------------------DERLFQEARRIVIAQYQHIVYNEYLPALLGPEAMNKFLLPPLNNGYYKGYD-------- 294 (530)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHTTHHHHHGHGGHHHHS-G----GCGTTS---------
T ss_pred ---------------------hhHHHHHHHHHHHHHHhhhhHhhhhhhhcchhhhhhccccccccccccCCC--------
Confidence 899999999999999999999999999999999999887766666666654
Q ss_pred hhhcccccccccccccCCCCCCCCCCccCCCCCCCCcchHHHHhhhhccccccCccceeecccccc-cCCCCCccccccC
Q psy16067 922 ADFAAGAFRGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAFRGLHSLIPGTIKLVNERRV-TNQELPFSSTMQH 1000 (1386)
Q Consensus 922 neFAtaAfR~hs~~~~~~l~~~~~~~~~~Yd~~vnpsi~~EFatAAfRfgHSlI~~~i~~~~~~~~-~~~~~~l~~~~~~ 1000 (1386)
+.++|+|++||++||||||||||++.+.+.+.++. ....++|.+.|++
T Consensus 295 -------------------------------~~~~~~i~~EFa~aA~RfgHs~i~~~~~~~~~~~~~~~~~~~L~d~f~~ 343 (530)
T PF03098_consen 295 -------------------------------PSVDPSISNEFAAAAYRFGHSMIPDTYDRWDENFEIPEPSLPLSDAFFN 343 (530)
T ss_dssp -------------------------------TTS--S-BTTH-HHHGGGGGGGS-SEEEEBTTTSBETTSEEEGGGGBT-
T ss_pred -------------------------------CCCCCchhHHHHHHHHHhhheeehhhhhhccccCCcccccccccccccC
Confidence 45566677778899999999999999999887762 3567899999999
Q ss_pred cc-cccccccchhhhhhhhhhhhhhhcC--CCCCHHHHhhccccCCCCccccccccccCc----------chhhhHHhhC
Q psy16067 1001 PG-DILEVMDVFDSTLRGLTNQLQQYQD--RFITEQTIDFLFRVGSLSLEKVIVDLVGLT----------LGFFYLWYCG 1067 (1386)
Q Consensus 1001 p~-~il~~~~~~d~llrGl~~q~~~~~D--~~i~~~l~n~LF~~~~~~~~~~g~DL~~ln----------i~n~~r~~cg 1067 (1386)
|. .++ ..+++|.+++|+..|+++..| .+++++|+++||+..+.+. .+||+++| .||.||++||
T Consensus 344 ~~~~~~-~~~gid~ll~G~~~~~a~~~d~~~~~~~~l~~~lf~~~~~~~---~~DL~a~nIqRGRdhGLp~yn~~R~~cg 419 (530)
T PF03098_consen 344 PSNRLL-EEGGIDPLLRGLASQPAQKVDNPRFLVDDLRNHLFGPRNVPG---SLDLAALNIQRGRDHGLPSYNDYREFCG 419 (530)
T ss_dssp HH-HHH-TTTCSHHHHHHHHHSEEEHHBTTBHSHHHHHTSEESTTSSSE---EEHHHHHHHHHHHHTTB-BHHHHHHHTT
T ss_pred cchhhh-hccchHHHHhHHhhCccccccHHHHhhhHhhcccccccCCcc---hhHHHHHHHHHHHHhCCchHHHHHHHhc
Confidence 97 333 356899999999999999999 9999999999997654331 13665555 4899999999
Q ss_pred CCH--------------HHHHHHHHhcCCCCccccceeeecccccCCCCcchHHHHHHHHHHHHhhcCCcccccCCCCCC
Q psy16067 1068 GFL--------------LQVTRLSQVYRGVNDIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPATN 1133 (1386)
Q Consensus 1068 L~~--------------~~i~~L~~lY~~vdDIDL~vGgLaE~p~~G~~vGPTf~CII~~QF~rLr~GDRFwYEn~~~~~ 1133 (1386)
|++ .++++|+++|++|||||||||+|+|++++|+++||||+|||++||.+||+||||||||
T Consensus 420 l~~~~sf~dl~~~~~~~~i~~~L~~~Y~~vddvDL~vG~laE~~~~G~~lGpt~~~Ii~~qf~~l~~gDRf~yen----- 494 (530)
T PF03098_consen 420 LPPATSFEDLTDEISDEEIAAALRALYGHVDDVDLWVGGLAEKPVPGGLLGPTFSCIIAEQFSRLRRGDRFWYEN----- 494 (530)
T ss_dssp ----SSHHHHHHHHTSHHHHHHHHHHHSSGGGSBHHHHHHHS-BSTTSSSBHHHHHHHHHHHHHHHHTSTTGTTS-----
T ss_pred cCCCCCHHHhhhhhhHHHHHHHHHHhccchhcccccceeeeeccccCCCCCHHHHhHHHHHHHHHHhcCcccccC-----
Confidence 962 2459999999999999999999999999999999999999999999999999999995
Q ss_pred CCCcChhhHHHHHhhccccceecccCCccccccCCCCC
Q psy16067 1134 PGAFTPGKQLTLTSLTSLASLCIFSCFQALDKIRPSNH 1171 (1386)
Q Consensus 1134 p~~FT~~qql~~irk~sla~l~~~~~sDaiDkIQps~f 1171 (1386)
|+.||++ |+++||++||++|+|.+ ++.+++||+++|
T Consensus 495 ~~~ft~~-ql~~i~~~tla~iic~n-~~~~~~iq~~~F 530 (530)
T PF03098_consen 495 PGSFTPE-QLEEIRKTTLARIICDN-TDDITRIQPNAF 530 (530)
T ss_dssp CTTCTHH-HHHHHTTT-HHHHHHHH-STS-SEEESSTT
T ss_pred cCcCCHH-HHHHHHHCCHHHHHHhc-CCccccCCCCCC
Confidence 5899997 89999999999987753 566799999986
No 3
>PLN02283 alpha-dioxygenase
Probab=100.00 E-value=1.9e-82 Score=776.60 Aligned_cols=357 Identities=22% Similarity=0.287 Sum_probs=286.5
Q ss_pred ccccccccCcccCCcCCCCCHHhhHhhhcCCCCceeeeccCCccCCCCCCCCCCCCCCCccccccCCccccccchhhhHH
Q psy16067 691 TFQIVQSTHFIDVSFMYGSHPDKARELRSLSRGKLRVREVNGRTFMPTGDPSNCVNASSNICYDAGDIRVNQQLDLAVSQ 770 (1386)
Q Consensus 691 reQiNq~TsfLD~S~VYGSs~~~a~~LRsf~~G~Lk~~~~~g~~llP~~~~~~C~~~~~~~Cf~aGD~R~Ne~pgLtalh 770 (1386)
++|+|++|||||||+||||+++++++||+|++|+||++.. .++|.. ...||.+||.| |++|||++||
T Consensus 204 ~~qiN~~Ts~lD~S~IYGss~~~~~~LRtf~~GkLk~~~~---~~l~~~---------~~~~~~~Gd~r-n~~pGL~~lh 270 (633)
T PLN02283 204 TGSLNIRTPWWDGSVIYGSNEKGLRRVRTFKDGKLKISED---GLLLHD---------EDGIPISGDVR-NSWAGVSLLQ 270 (633)
T ss_pred ccccccccceeecccccCCCHHHHHhhhCCCCCccCcCCC---CCCCCC---------ccCCcccCccc-cccHHHHHHH
Confidence 6899999999999999999999999999999999998632 355542 12499999999 8999999999
Q ss_pred HhHhhhchHHHHHHHhhCCCCCCchhHHHHHhHhhhhheeeeeeecccccccccccccccchhhhhhhhHHHHHhHHHHH
Q psy16067 771 TVWLRFHNYVAEKLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPILIGDIRVNQQLDLAVSQTVWLRFHNYVAE 850 (1386)
Q Consensus 771 tlflReHNrIA~~L~~iNP~W~~~De~lfq~AR~i~ia~~q~I~~~e~LP~llGD~R~NEn~~L~alhTlflReHNriA~ 850 (1386)
|||+|||||||++|+++||+|+ ||+|||+||+||+|+||||+|+||||.|+|..+.
T Consensus 271 tLF~REHNrIad~L~~~nP~w~--DE~LFQeAR~Iv~A~~q~I~~~EylP~iLg~~~~---------------------- 326 (633)
T PLN02283 271 ALFVKEHNAVCDALKEEYPDFD--DEELYRHARLVTSAVIAKIHTIDWTVELLKTDTL---------------------- 326 (633)
T ss_pred HHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHHHHHHheeeeeeeccHHhcCCccc----------------------
Confidence 9999999999999999999999 9999999999999999999999999999997543
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHhhhhhhhhhchhhhhhccchhhhcCCCC--CCCCCccCCCCCCCCcchhhhcccc
Q psy16067 851 KLIQQNPSWSNRDELVYQEARRLVIGCFQHIVYNEWLPILIGESYTKDVGLSP--TSSGYFQGYDPEVNPSTLADFAAGA 928 (1386)
Q Consensus 851 ~L~~~Np~Ws~~DE~LFQEARrIViA~~QhItYnEfLP~LLG~~~~~~~gL~~--~~~G~y~gYd~~vdp~i~neFAtaA 928 (1386)
.+.++.+|.+ ++|++.+..+|+.. ..+|| .||+
T Consensus 327 -~~~~~~~w~g----------------------------llg~~~~~~~g~~~~~~~~g~-~gy~--------------- 361 (633)
T PLN02283 327 -LAGMRANWYG----------------------------LLGKKFKDTFGHIGGPILSGL-VGLK--------------- 361 (633)
T ss_pred -cccccccccc----------------------------ccchhhhhhcccccccccccc-cCCC---------------
Confidence 1235667763 67887777776642 12332 2332
Q ss_pred cccccccccCCCCCCCCCCccCCCCCCCCcchHHHHhhhhccccccCccceeecccccc--------cCCCCCccccccC
Q psy16067 929 FRGESYTKDVGLSPTSSGYFQGYDPEVNPSTLADFAAGAFRGLHSLIPGTIKLVNERRV--------TNQELPFSSTMQH 1000 (1386)
Q Consensus 929 fR~hs~~~~~~l~~~~~~~~~~Yd~~vnpsi~~EFatAAfRfgHSlI~~~i~~~~~~~~--------~~~~~~l~~~~~~ 1000 (1386)
..+++.+++++++|| ++|||| ||+|++.+.+.+.... ...++++.+.++.
T Consensus 362 --------------------~~~~~~v~~~is~EF-~aaYR~-Hslip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~ 419 (633)
T PLN02283 362 --------------------KPNNHGVPYSLTEEF-TSVYRM-HSLLPDHLILRDITAAPGENKSPPLIEEIPMPELIGL 419 (633)
T ss_pred --------------------ccccCCCCcchhHHH-HHHHhh-hhcCCCceecccccccccccccccccccccHHHHHhh
Confidence 235667888999999 578998 9999999887765331 1123555565543
Q ss_pred cccccccccchhhhhhhhhhhhhhhcCCCCCHH-HHhhcccc--CCCCccccccccccCcc----------hhhhHHhhC
Q psy16067 1001 PGDILEVMDVFDSTLRGLTNQLQQYQDRFITEQ-TIDFLFRV--GSLSLEKVIVDLVGLTL----------GFFYLWYCG 1067 (1386)
Q Consensus 1001 p~~il~~~~~~d~llrGl~~q~~~~~D~~i~~~-l~n~LF~~--~~~~~~~~g~DL~~lni----------~n~~r~~cg 1067 (1386)
.+.......|++.+++||..|+++.++.+..+. +++.++.. +.. ...++||++++| ||.||++||
T Consensus 420 ~~~~~l~~~Gl~~ll~~l~~q~aga~~l~n~p~~l~~l~~~~~~g~~--~~~g~DLaal~IqRgRDhGlp~YNefR~~~g 497 (633)
T PLN02283 420 KGEKKLSKIGFEKLMVSMGHQACGALELWNYPSWMRDLVPQDIDGED--RPDHVDMAALEIYRDRERGVARYNEFRRNLL 497 (633)
T ss_pred cccccccccCHHHHHHHHhhcchhccccccCcHHHHhhhhccccCCc--ccccccHHHHHHHhhhhcCCccHHHHHHHcC
Confidence 322111246899999999999999998755555 44433221 111 124788888877 799999999
Q ss_pred CC-----------HHHHHHHHHhcC-CCCccccceeeecccccCCCCcchHHHHHHHHHHHHhhcCCcccccCCCCCCCC
Q psy16067 1068 GF-----------LLQVTRLSQVYR-GVNDIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPATNPG 1135 (1386)
Q Consensus 1068 L~-----------~~~i~~L~~lY~-~vdDIDL~vGgLaE~p~~G~~vGPTf~CII~~QF~rLr~GDRFwYEn~~~~~p~ 1135 (1386)
|. ++++++|++||+ +|||||||||+|+|++++|+.+||||+|||+.||.|+++||||||||. +|+
T Consensus 498 L~~~~sFedlt~d~e~~~~L~~lY~~~vddVDL~VG~laE~~v~G~~vG~T~~~i~~~~a~r~~~gDRF~~en~---np~ 574 (633)
T PLN02283 498 MIPISKWEDLTDDEEAIEVLREVYGDDVEKLDLLVGLMAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNF---NEK 574 (633)
T ss_pred CCCCCCHHHcCCCHHHHHHHHHHhCCCHHHHHhhhhheecccCCCCCcCHHHHHHHHHHHHHHhcCCCCeEecC---CcC
Confidence 96 346899999998 899999999999999999999999999999999999999999999985 699
Q ss_pred CcChhhHHHHHhhc-cccceecc
Q psy16067 1136 AFTPGKQLTLTSLT-SLASLCIF 1157 (1386)
Q Consensus 1136 ~FT~~qql~~irk~-sla~l~~~ 1157 (1386)
.||+. |+++|+++ ||+.|+|-
T Consensus 575 ~fT~~-gl~~I~~t~tl~dvl~r 596 (633)
T PLN02283 575 TYTKK-GLEWVNTTESLKDVIDR 596 (633)
T ss_pred cCCHH-HHHHHHccCcHHHHHHH
Confidence 99997 89999997 99998764
No 4
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-42 Score=410.75 Aligned_cols=181 Identities=49% Similarity=0.749 Sum_probs=157.2
Q ss_pred ccceecccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCccceeeecCCCCCceeeecC
Q psy16067 1151 LASLCIFSCFQALDKIRPSNHPGPNSLMDQPCRGGAAPGPGDGDVVANVNNNNNNNNNNNITNVYFFLFPGFGQDPIIPN 1230 (1386)
Q Consensus 1151 la~l~~~~~sDaiDkIQps~f~~pn~l~nv~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~g~G~I~I~~d 1230 (1386)
|.-|+-| .+|++|+++..++.+|..... . ++ .+|+|.+|
T Consensus 32 LRELISN-AsDAidKlr~~al~~~~~~~~-~-----------~~----------------------------~~I~i~~D 70 (623)
T COG0326 32 LRELISN-ASDAIDKLRFEALSDPELGEG-D-----------SD----------------------------LRIRISFD 70 (623)
T ss_pred HHHHHhh-hHHHHHHHHHHhccCccccCC-C-----------CC----------------------------ceEEEEEc
Confidence 3345544 368999998888777654321 1 11 27999999
Q ss_pred CCCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcC-CccccccccccceeEEEeecceeEEEeecCC-CcceE
Q psy16067 1231 KEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAG-ADISMIGQFGVGFYSAYLVADKVTVTSKHND-DEQYI 1308 (1386)
Q Consensus 1231 ~~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~-~~~~~IGqFGIGF~S~FmVadkV~V~Tk~~~-~~~~~ 1308 (1386)
++++||+|+|||||||++|+++||||||+|||++|++.+..+ .+..+||||||||||||||||||+|+||+++ +++++
T Consensus 71 k~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~ 150 (623)
T COG0326 71 KDNKTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYH 150 (623)
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceE
Confidence 999999999999999999999999999999999999998765 4778999999999999999999999999986 67889
Q ss_pred EEeCCCCceEEecCCCCCCCCCcEEEEEeccchhhcCCHHHHHHHHHHhcCCCCcceEEEEeeee
Q psy16067 1309 WESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKER 1373 (1386)
Q Consensus 1309 w~s~~~~~y~i~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~ 1373 (1386)
|+|+|+|+|+|++.+.+.. +||+|+||||++..+|+++++|++||||||+||++||++.+++..
T Consensus 151 W~S~g~g~ytv~~~~~~~~-~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~ 214 (623)
T COG0326 151 WESDGEGEYTVEDIDKEPR-RGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEK 214 (623)
T ss_pred EEEcCCCceEEeeccCCCC-CCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccc
Confidence 9999999999998764432 699999999999999999999999999999999999999987643
No 5
>KOG0020|consensus
Probab=100.00 E-value=1.7e-41 Score=386.11 Aligned_cols=183 Identities=53% Similarity=0.804 Sum_probs=163.9
Q ss_pred eecccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCccceeeecCCCCCceeeecCCCC
Q psy16067 1154 LCIFSCFQALDKIRPSNHPGPNSLMDQPCRGGAAPGPGDGDVVANVNNNNNNNNNNNITNVYFFLFPGFGQDPIIPNKEE 1233 (1386)
Q Consensus 1154 l~~~~~sDaiDkIQps~f~~pn~l~nv~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~g~G~I~I~~d~~~ 1233 (1386)
||.| .+|++|+|+.-++++++.+...+. + .|+|..|+++
T Consensus 103 LISN-ASDAlDKIRllaLtd~~~L~~~~e-------------------------------l---------~ikIK~Dke~ 141 (785)
T KOG0020|consen 103 LISN-ASDALDKIRLLALTDKDVLGETEE-------------------------------L---------EIKIKADKEK 141 (785)
T ss_pred HHhh-hhhhhhheeeeeccChhHhCcCcc-------------------------------e---------EEEEeechhh
Confidence 4444 368999999999887766532111 1 6999999999
Q ss_pred CEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCcc-----ccccccccceeEEEeecceeEEEeecCCCcceE
Q psy16067 1234 KTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADI-----SMIGQFGVGFYSAYLVADKVTVTSKHNDDEQYI 1308 (1386)
Q Consensus 1234 ~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~-----~~IGqFGIGF~S~FmVadkV~V~Tk~~~~~~~~ 1308 (1386)
+.|.|.|+|||||++||++||||||+|||.+|+++++..++. ++||||||||||||+|||+|+|+||++++.||+
T Consensus 142 klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~Qyi 221 (785)
T KOG0020|consen 142 KLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYI 221 (785)
T ss_pred CeeeEecccCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCcccee
Confidence 999999999999999999999999999999999999875544 699999999999999999999999999999999
Q ss_pred EEeCCCCceEEecCC-CCCCCCCcEEEEEeccchhhcCCHHHHHHHHHHhcCCCCcceEEEEeeeeccccC
Q psy16067 1309 WESSAGGSFTIKPDN-SEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKELS 1378 (1386)
Q Consensus 1309 w~s~~~~~y~i~~~~-~~~~~~GT~I~L~Lk~d~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~ev~ 1378 (1386)
|+|++. +|+|..++ +++++|||.|+||||+++.+||++++||++|+|||+||+|||++|.-|+++.||+
T Consensus 222 WESdan-~FsvseDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~p 291 (785)
T KOG0020|consen 222 WESDAN-SFSVSEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVP 291 (785)
T ss_pred eeccCc-ceeeecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeecc
Confidence 999988 99999988 7889999999999999999999999999999999999999999998887666554
No 6
>KOG0019|consensus
Probab=100.00 E-value=7.4e-41 Score=393.31 Aligned_cols=187 Identities=52% Similarity=0.796 Sum_probs=168.8
Q ss_pred cceecccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCccceeeecCCCCCceeeecCC
Q psy16067 1152 ASLCIFSCFQALDKIRPSNHPGPNSLMDQPCRGGAAPGPGDGDVVANVNNNNNNNNNNNITNVYFFLFPGFGQDPIIPNK 1231 (1386)
Q Consensus 1152 a~l~~~~~sDaiDkIQps~f~~pn~l~nv~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~g~G~I~I~~d~ 1231 (1386)
..|+-|. +|++++++...+..|+.+ .+-. .|+|++++
T Consensus 63 RELISNa-SDAldKiRy~~lt~~~~~--~~~l----------------------------------------~I~i~~nk 99 (656)
T KOG0019|consen 63 RELISNA-SDALEKLRYLELKGDEKA--LPEL----------------------------------------EIRIITNK 99 (656)
T ss_pred Hhhhccc-cchHHHHHHHhhcCcccc--ccce----------------------------------------eEEeccCC
Confidence 3455553 789999999988877654 2211 69999999
Q ss_pred CCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHh-cCCccccccccccceeEEEeecceeEEEeecCCCcceEEE
Q psy16067 1232 EEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQ-AGADISMIGQFGVGFYSAYLVADKVTVTSKHNDDEQYIWE 1310 (1386)
Q Consensus 1232 ~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~-~~~~~~~IGqFGIGF~S~FmVadkV~V~Tk~~~~~~~~w~ 1310 (1386)
++++|+|.|+|||||++||++||||||+|||+.||++++ ++++.++||||||||||+|||||||+|+||++++++|.|+
T Consensus 100 ~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y~We 179 (656)
T KOG0019|consen 100 DKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADEGLQWT 179 (656)
T ss_pred CcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCcceeee
Confidence 999999999999999999999999999999999999999 6889999999999999999999999999999999999999
Q ss_pred eCCCCceEEecCCCCCCCCCcEEEEEeccchhhcCCHHHHHHHHHHhcCCCCcceEEEEeee---------eccccCccc
Q psy16067 1311 SSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKE---------REKELSEDE 1381 (1386)
Q Consensus 1311 s~~~~~y~i~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~---------~~~ev~~~~ 1381 (1386)
|.++|+|+|..+++ ..+||+|+||||+++.+|+++++++++|||||.||.|||++++++. .++||+.+|
T Consensus 180 s~~~gs~~v~~~~~--~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~ek~N~tKpiW~rnp~dit~ee 257 (656)
T KOG0019|consen 180 SNGRGSYEIAEASG--LRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNGERVNNLKAIWTMNPKEVNEEE 257 (656)
T ss_pred cCCCCceEEeeccC--ccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhhhhhhccCcccccCchhhhHHH
Confidence 99999999998765 8999999999999999999999999999999999999999999874 457777777
Q ss_pred cc
Q psy16067 1382 EE 1383 (1386)
Q Consensus 1382 ~~ 1383 (1386)
+.
T Consensus 258 y~ 259 (656)
T KOG0019|consen 258 HE 259 (656)
T ss_pred HH
Confidence 54
No 7
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=9.3e-39 Score=395.08 Aligned_cols=153 Identities=58% Similarity=0.909 Sum_probs=141.2
Q ss_pred ceeeecCCCCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhc-CCccccccccccceeEEEeecceeEEEeecC
Q psy16067 1224 QDPIIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQA-GADISMIGQFGVGFYSAYLVADKVTVTSKHN 1302 (1386)
Q Consensus 1224 ~I~I~~d~~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~-~~~~~~IGqFGIGF~S~FmVadkV~V~Tk~~ 1302 (1386)
+|+|.+|+++++|+|+|||||||++||++||||||+|||+.|+++++. +.+..+||||||||||||||||+|+|+||++
T Consensus 125 ~I~I~~D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~ 204 (814)
T PTZ00130 125 EIRISANKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNN 204 (814)
T ss_pred eEEEEECCCCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCC
Confidence 799999999999999999999999999999999999999999999875 3456899999999999999999999999999
Q ss_pred CCcceEEEeCCCCceEEecCC-CCCCCCCcEEEEEeccchhhcCCHHHHHHHHHHhcCCCCcceEEEEeeeeccc
Q psy16067 1303 DDEQYIWESSAGGSFTIKPDN-SEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREKE 1376 (1386)
Q Consensus 1303 ~~~~~~w~s~~~~~y~i~~~~-~~~~~~GT~I~L~Lk~d~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~e 1376 (1386)
++++|.|+|+|+|+|+|++.+ +...++||+|+||||++..+|+++++|++||+|||+||+|||+|+++++++++
T Consensus 205 ~~~~~~W~s~g~g~y~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~ 279 (814)
T PTZ00130 205 NDEQYIWESTADAKFTIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEE 279 (814)
T ss_pred CCceEEEEECCCCcEEEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEccccccccc
Confidence 889999999999999999865 34578999999999999999999999999999999999999999875544333
No 8
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=1.4e-36 Score=376.21 Aligned_cols=152 Identities=70% Similarity=1.098 Sum_probs=141.4
Q ss_pred ceeeecCCCCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeecceeEEEeecCC
Q psy16067 1224 QDPIIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVTSKHND 1303 (1386)
Q Consensus 1224 ~I~I~~d~~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV~V~Tk~~~ 1303 (1386)
.|+|.+|+++++|+|+|||||||++||+++|||||+|||+.|+++++.+.+..+||||||||||||||||+|+|+||+++
T Consensus 62 ~I~i~~d~~~~~L~I~DnGiGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~ 141 (701)
T PTZ00272 62 CIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNS 141 (701)
T ss_pred EEEEEEcCCCCEEEEEECCCCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCC
Confidence 68999999999999999999999999999999999999999999987666778999999999999999999999999988
Q ss_pred CcceEEEeCCCCceEEecCCCCCCCCCcEEEEEeccchhhcCCHHHHHHHHHHhcCCCCcceEEEEeeeecc
Q psy16067 1304 DEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEKEREK 1375 (1386)
Q Consensus 1304 ~~~~~w~s~~~~~y~i~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~ 1375 (1386)
+++|.|+|+++|+|+|.+.+.....+||+|+||||++..+|+++++|++||+|||+||+|||+|+++++++.
T Consensus 142 ~~~~~W~s~~~g~y~i~~~~~~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~ 213 (701)
T PTZ00272 142 DESYVWESSAGGTFTITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEK 213 (701)
T ss_pred CceEEEEECCCCcEEEEeCCCCCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeecccccc
Confidence 889999999999999998765566899999999999999999999999999999999999999987655443
No 9
>KOG2408|consensus
Probab=100.00 E-value=2.9e-36 Score=374.77 Aligned_cols=230 Identities=32% Similarity=0.468 Sum_probs=167.3
Q ss_pred CCccCCCCCCcCCCCCCC-cccCCcccccccccCCCCcccccccccCCCCCCCcchhhcccccCCccCchhhhHHHHHHH
Q psy16067 177 TKYRTLDGTCNNLRRPWW-GAVDTAHVRLMRPYYEDGVSSYRVSQVDASPLPNARVLSRVFLPDRNISDVHTRMYLEFSQ 255 (1386)
Q Consensus 177 ~~yRt~DGscNNl~~P~~-G~a~t~~~R~l~p~y~DGvs~pR~~s~~g~~LPnpRlVS~~L~~d~~~~~~~s~m~~~~gQ 255 (1386)
..|+.||=.||.-.--.. .+|---.-=++++.|.......+... +.++..+...++..+....++.... .+.+
T Consensus 448 g~~~gY~~~~dp~IsneFataAfRfgHsli~~~~~~l~~~~~~~~----~~~~l~~~~~~~~~~~i~~~ggid~--llrG 521 (719)
T KOG2408|consen 448 GGYRGYDPNVDPTISNEFATAAFRFGHSLIPPFFQRLDENFQPIG----EVVNLPLHDAFFNPWLILNEGGIDP--LLRG 521 (719)
T ss_pred ccccCcCCCCChhhhhhhhHHHHhhhcccCchhhhhhcccCcccc----cccCchhhhhhcchhhhhhccChhH--HHHH
Confidence 467777777776554444 33333333456888855444444321 1123333334444443333333222 2334
Q ss_pred HHhhcccCCC-CC----CCcccccCCCCCcc-cchHHHHHHhhcccCCCchHHHHHHhCCCCCCCcchhcccCCHHHHHH
Q psy16067 256 LVAHDITLNP-QE----STAVPTRGLRGEFG-DDLAARDIQRGRDYGLRPYVDYRELCGLSTVRSFGDLNDFMDSEQVTR 329 (1386)
Q Consensus 256 fI~HDi~lt~-~~----~~~~~~~~~~~~~g-~DL~a~~IqrgRdhGip~Y~~~R~~c~l~~~~sf~dl~~~~~~~~~~~ 329 (1386)
|+.-.+.+.. +. ...... +..+..+ +||+|||||||||||+|+||+||++|||+++++|+||.+.+.++++.+
T Consensus 522 l~~~~~~~~~d~~~~~~i~~~lf-~~~~~~~~~DL~ainIQRgRDhGlp~Yn~yR~~cgL~~~~s~edL~~~i~~~~~~k 600 (719)
T KOG2408|consen 522 LTTQPAKMPDDQLLNGEITERLF-VKTDEDGELDLAALNIQRGRDHGLPPYNEYRKFCGLSPATSFEDLSDEIEPEIINK 600 (719)
T ss_pred HHhchhhcccchhcCHHHHHHHh-hhcCcccccchhhhhhhccccCCCCCHHHHHHHcCCCCCCCHHHhhhhhhHHHHHH
Confidence 4443333221 11 000111 1223345 999999999999999999999999999999999999999888999999
Q ss_pred HHHhhCCCCcccccccccccccCCCcccChhHHHHHHHHHHhhhcCCcceecCCCCCCCCCCCcccccceecccccchhh
Q psy16067 330 LSQVYRGVNDIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLTLTSLTSLASWR 409 (1386)
Q Consensus 330 l~~lY~~~~dvDL~~G~l~E~~~~G~~~gpT~~cii~~qf~~l~~gDRFwyen~~~~~p~~ft~~~ql~~i~~~sl~~~~ 409 (1386)
|+.+|++|||||||||+++|++++|+.||||++|||+.||.|+|+||||||||. +|+.||++ |++||+|+||+.+|
T Consensus 601 l~~lY~~~ddiDL~vG~~~E~~~~g~~vGPTl~cii~~Qf~r~r~gDRf~yen~---~~~~Ft~~-QL~ei~k~sLarii 676 (719)
T KOG2408|consen 601 LRTLYGTPDDIDLYVGLLLEKPLPGGLVGPTLACIIAEQFLRLRDGDRFWYENF---NPGVFTPE-QLEEIRKVSLARII 676 (719)
T ss_pred HHHhcCCchhhcccccccccccCCCceecccHHHHHHHHHHHHhccCceeecCC---CCCccCHH-HHHHHHHhhchhee
Confidence 999999999999999999999999999999999999999999999999999984 79999998 99999999999999
Q ss_pred ccc-cccCC
Q psy16067 410 LQK-VYHAP 417 (1386)
Q Consensus 410 ~~~-~~~~~ 417 (1386)
|+| ..+..
T Consensus 677 C~N~~~~~~ 685 (719)
T KOG2408|consen 677 CDNGTKITK 685 (719)
T ss_pred ecCCccccc
Confidence 999 54443
No 10
>PLN02283 alpha-dioxygenase
Probab=99.97 E-value=6e-32 Score=332.61 Aligned_cols=128 Identities=27% Similarity=0.347 Sum_probs=123.7
Q ss_pred cccchHHHHHHhhcccCCCchHHHHHHhCCCCCCCcchhcccCCHHHHHHHHHhhC-CCCcccccccccccccCCCcccC
Q psy16067 280 FGDDLAARDIQRGRDYGLRPYVDYRELCGLSTVRSFGDLNDFMDSEQVTRLSQVYR-GVNDIDYYIGGLLESVIRGTLSS 358 (1386)
Q Consensus 280 ~g~DL~a~~IqrgRdhGip~Y~~~R~~c~l~~~~sf~dl~~~~~~~~~~~l~~lY~-~~~dvDL~~G~l~E~~~~G~~~g 358 (1386)
+|+||++++||||||||||+||+||++|||++++||+||++ |++++++|+++|+ +|||||||||+++|++++|+.+|
T Consensus 469 ~g~DLaal~IqRgRDhGlp~YNefR~~~gL~~~~sFedlt~--d~e~~~~L~~lY~~~vddVDL~VG~laE~~v~G~~vG 546 (633)
T PLN02283 469 DHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTD--DEEAIEVLREVYGDDVEKLDLLVGLMAEKKIKGFAIS 546 (633)
T ss_pred ccccHHHHHHHhhhhcCCccHHHHHHHcCCCCCCCHHHcCC--CHHHHHHHHHHhCCCHHHHHhhhhheecccCCCCCcC
Confidence 57999999999999999999999999999999999999997 8999999999998 89999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcCCcceecCCCCCCCCCCCcccccceeccc-ccchhhcccc
Q psy16067 359 PSFRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLTLTSLT-SLASWRLQKV 413 (1386)
Q Consensus 359 pT~~cii~~qf~~l~~gDRFwyen~~~~~p~~ft~~~ql~~i~~~-sl~~~~~~~~ 413 (1386)
||++||++.||.++++||||||||+ +|+.||+. |++||+++ +|++||+.+.
T Consensus 547 ~T~~~i~~~~a~r~~~gDRF~~en~---np~~fT~~-gl~~I~~t~tl~dvl~r~~ 598 (633)
T PLN02283 547 ETAFFIFLLMASRRLEADRFFTSNF---NEKTYTKK-GLEWVNTTESLKDVIDRHY 598 (633)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEecC---CcCcCCHH-HHHHHHccCcHHHHHHHhC
Confidence 9999999999999999999999998 79999998 99999997 9999998774
No 11
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=99.97 E-value=1.6e-31 Score=327.83 Aligned_cols=129 Identities=47% Similarity=0.793 Sum_probs=114.4
Q ss_pred cchHHHHHHhhcccCCCchHHHHHHhCCCCCCCcchhccc-CCHHHHHHHHHhhCCCCcccccccccccccCCCcccChh
Q psy16067 282 DDLAARDIQRGRDYGLRPYVDYRELCGLSTVRSFGDLNDF-MDSEQVTRLSQVYRGVNDIDYYIGGLLESVIRGTLSSPS 360 (1386)
Q Consensus 282 ~DL~a~~IqrgRdhGip~Y~~~R~~c~l~~~~sf~dl~~~-~~~~~~~~l~~lY~~~~dvDL~~G~l~E~~~~G~~~gpT 360 (1386)
+||+++|||||||||||+||+||++|||+++++|+||.+. .+++++++|+++|++|||||||+|+|+|++++|+.+|||
T Consensus 393 ~DL~a~nIqRGRdhGLp~yn~~R~~cgl~~~~sf~dl~~~~~~~~i~~~L~~~Y~~vddvDL~vG~laE~~~~G~~lGpt 472 (530)
T PF03098_consen 393 LDLAALNIQRGRDHGLPSYNDYREFCGLPPATSFEDLTDEISDEEIAAALRALYGHVDDVDLWVGGLAEKPVPGGLLGPT 472 (530)
T ss_dssp EHHHHHHHHHHHHTTB-BHHHHHHHTT----SSHHHHHHHHTSHHHHHHHHHHHSSGGGSBHHHHHHHS-BSTTSSSBHH
T ss_pred hHHHHHHHHHHHHhCCchHHHHHHHhccCCCCCHHHhhhhhhHHHHHHHHHHhccchhcccccceeeeeccccCCCCCHH
Confidence 4999999999999999999999999999999999999764 567777999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCcceecCCCCCCCCCCCcccccceecccccchhhccccccC
Q psy16067 361 FRCVFAEAFYRYKYGDRYFYEGPPATNPGAFTPGKQLTLTSLTSLASWRLQKVYHA 416 (1386)
Q Consensus 361 ~~cii~~qf~~l~~gDRFwyen~~~~~p~~ft~~~ql~~i~~~sl~~~~~~~~~~~ 416 (1386)
++|||++||.++|+||||||| +|++||++ |+++||++||+.+||.+....
T Consensus 473 ~~~Ii~~qf~~l~~gDRf~ye-----n~~~ft~~-ql~~i~~~tla~iic~n~~~~ 522 (530)
T PF03098_consen 473 FSCIIAEQFSRLRRGDRFWYE-----NPGSFTPE-QLEEIRKTTLARIICDNTDDI 522 (530)
T ss_dssp HHHHHHHHHHHHHHTSTTGTT-----SCTTCTHH-HHHHHTTT-HHHHHHHHSTS-
T ss_pred HHhHHHHHHHHHHhcCccccc-----CcCcCCHH-HHHHHHHCCHHHHHHhcCCcc
Confidence 999999999999999999999 46999998 999999999999999987443
No 12
>PRK14083 HSP90 family protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=312.33 Aligned_cols=146 Identities=31% Similarity=0.525 Sum_probs=131.8
Q ss_pred Cceeeec-CCCCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeecceeEEEeec
Q psy16067 1223 GQDPIIP-NKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVTSKH 1301 (1386)
Q Consensus 1223 G~I~I~~-d~~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV~V~Tk~ 1301 (1386)
++|+|.+ |.++++|+|+|||||||++|+.++|++||+|+++.|. + ...+..+||||||||||+|||||+|+|+||+
T Consensus 51 ~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~--~-~~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~ 127 (601)
T PRK14083 51 GRIRIELTDAGGGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDEN--L-GFARNDFLGQFGIGLLSCFLVADEIVVVSRS 127 (601)
T ss_pred ceEEEEEccCCCcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhh--h-cccccccccccccceEEEEEecCEEEEEecc
Confidence 4788888 8889999999999999999999999999999998864 2 1234579999999999999999999999999
Q ss_pred C-CCcceEEEeCCCCceEEecCCCCCCCCCcEEEEEeccchhhcCCHHHHHHHHHHhcCCCCcceEEEEee
Q psy16067 1302 N-DDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEK 1371 (1386)
Q Consensus 1302 ~-~~~~~~w~s~~~~~y~i~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~ 1371 (1386)
. ++.++.|++.++|+|+|+..+.+..++||+|+||+|++..+|+++++|++||++||.||+|||+|++++
T Consensus 128 ~~~~~~~~W~~~~~g~y~i~~~~~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~~ 198 (601)
T PRK14083 128 AKDGPAVEWRGKADGTYSVRKLETERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGEK 198 (601)
T ss_pred CCCCceEEEEECCCCceEEEeCCCCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCce
Confidence 7 577999999999999999754456789999999999999999999999999999999999999998653
No 13
>PRK05218 heat shock protein 90; Provisional
Probab=99.95 E-value=8.6e-28 Score=298.04 Aligned_cols=145 Identities=52% Similarity=0.797 Sum_probs=133.3
Q ss_pred CceeeecCCCCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhc--CCccccccccccceeEEEeecceeEEEee
Q psy16067 1223 GQDPIIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQA--GADISMIGQFGVGFYSAYLVADKVTVTSK 1300 (1386)
Q Consensus 1223 G~I~I~~d~~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~--~~~~~~IGqFGIGF~S~FmVadkV~V~Tk 1300 (1386)
++|+|.+|.++++|+|+|||+|||++|+.++|++||+|||++|+++++. ..+..+||||||||||+|||||+|+|+||
T Consensus 62 ~~I~I~~d~~~~~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr 141 (613)
T PRK05218 62 LKIRISFDKEARTLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITR 141 (613)
T ss_pred cEEEEEEcCCCCeEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEc
Confidence 3799999999999999999999999999999999999999999998854 23568999999999999999999999999
Q ss_pred cCC--CcceEEEeCCCCceEEecCCCCCCCCCcEEEEEeccchhhcCCHHHHHHHHHHhcCCCCcceEEEE
Q psy16067 1301 HND--DEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLV 1369 (1386)
Q Consensus 1301 ~~~--~~~~~w~s~~~~~y~i~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~l~~lv~kys~fi~~PI~l~~ 1369 (1386)
+.+ +.++.|++++++.|+|++.. ..++||+|+||||++..+|++.++|+++|+|||+||+|||++++
T Consensus 142 ~~~~~~~~~~w~~~g~~~~~i~~~~--~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~ 210 (613)
T PRK05218 142 SAGPAAEAVRWESDGEGEYTIEEIE--KEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEK 210 (613)
T ss_pred CCCCCCceEEEEEeCCceeEEeECC--CCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEec
Confidence 965 46899999999999999754 24799999999999999999999999999999999999999965
No 14
>KOG0020|consensus
Probab=98.81 E-value=3e-09 Score=124.20 Aligned_cols=80 Identities=30% Similarity=0.445 Sum_probs=65.7
Q ss_pred CHHHHHHhhhcCCCchhHHHHHHHHhhccccCCCCCCCCcc---------ccccccCCCCC--Cch-hhhccCCCCcccc
Q psy16067 1 IVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEDPQ---------VELTLSGRPDR--SPE-RLIAAVPIRQTCQ 68 (1386)
Q Consensus 1 i~~~l~~~~~~d~~dk~vkdl~~ll~~tall~sgf~l~~~~---------~~~~l~~~~d~--~~~-~~~~~~p~~e~~~ 68 (1386)
||++|.+|+++|+.|++|||+++|||+||+|.|||.|.||+ ++.+|+|++|+ |++ .++++-|+.++.+
T Consensus 690 lirell~Ri~adeeD~t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~is~Da~ve~e~e~ee~E~~~~~ae 769 (785)
T KOG0020|consen 690 LIRELLRRIAADEEDETVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSLNISPDAQVEEEIEEEEDEPETSEAE 769 (785)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhcCCCcccccccccccccCCCCccccc
Confidence 68999999999999999999999999999999999999998 78899999998 333 4445567766666
Q ss_pred cccchhhhhhcC
Q psy16067 69 HEDNRVYERQAN 80 (1386)
Q Consensus 69 ~~~~~~~~~~~~ 80 (1386)
+..++-+|-.-|
T Consensus 770 et~~dd~~~~~~ 781 (785)
T KOG0020|consen 770 ETKSDDEEEELN 781 (785)
T ss_pred cccccchhhhhc
Confidence 666655554433
No 15
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=98.70 E-value=6.3e-09 Score=107.11 Aligned_cols=78 Identities=32% Similarity=0.503 Sum_probs=57.8
Q ss_pred eeeecCC---CCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccc-eeEEEeecceeEEEee
Q psy16067 1225 DPIIPNK---EEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVG-FYSAYLVADKVTVTSK 1300 (1386)
Q Consensus 1225 I~I~~d~---~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIG-F~S~FmVadkV~V~Tk 1300 (1386)
|.|.++. +...|.|.|||.||+.++|.. +++++.|.++.. + ....+|+||+| .+|+|+++++|+|+|+
T Consensus 22 I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~~~--~-----~~~~~G~~G~G~k~A~~~~~~~~~v~S~ 93 (137)
T PF13589_consen 22 IKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKKSE--K-----DRQSIGRFGIGLKLAIFSLGDRVEVISK 93 (137)
T ss_dssp EEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHHHH--H-----HGGGGGGGTSGCGGGGGGTEEEEEEEEE
T ss_pred EEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCCch--h-----hhhcCCCcceEHHHHHHHhcCEEEEEEE
Confidence 4554443 558999999999999999998 778999876632 1 22469999999 8999999999999999
Q ss_pred cCCCc-ceEEE
Q psy16067 1301 HNDDE-QYIWE 1310 (1386)
Q Consensus 1301 ~~~~~-~~~w~ 1310 (1386)
..+.. .+.|.
T Consensus 94 ~~~~~~~~~~~ 104 (137)
T PF13589_consen 94 TNGESFTYTID 104 (137)
T ss_dssp STTSSSEEEEE
T ss_pred ECCCCcEEEEE
Confidence 87543 34443
No 16
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=7.8e-08 Score=112.02 Aligned_cols=138 Identities=20% Similarity=0.252 Sum_probs=91.4
Q ss_pred ceeeecCCCCC-EEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeecceeEEEeec-
Q psy16067 1224 QDPIIPNKEEK-TLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVTSKH- 1301 (1386)
Q Consensus 1224 ~I~I~~d~~~~-~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV~V~Tk~- 1301 (1386)
.|.|.+..+.. .|+|.|||.||+++++...+.....|....+- .+ ....-.|.+|.|++|...+| +|+|+||.
T Consensus 41 ~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~-~~---~~~~~~G~rG~al~si~~~s-~~~i~S~~~ 115 (312)
T TIGR00585 41 RIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFE-DL---ERIETLGFRGEALASISSVS-RLTITTKTS 115 (312)
T ss_pred EEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChh-Hh---hcccccCccchHHHHHHhhC-cEEEEEeec
Confidence 56776655544 49999999999999998765554444332221 11 22356899999999999999 89999997
Q ss_pred -CCCcceEEEeCCCCceEEecCCCCCCCCCcEEEEE-e---ccchhhcC-----CHHHHHHHHHHhc---CCCCcceEEE
Q psy16067 1302 -NDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLH-M---KEDQAEYI-----EEKKIKEIVKKHS---QFIGYPIKLL 1368 (1386)
Q Consensus 1302 -~~~~~~~w~s~~~~~y~i~~~~~~~~~~GT~I~L~-L---k~d~~e~l-----~~~~l~~lv~kys---~fi~~PI~l~ 1368 (1386)
.++..+.|...++ .+........++||+|++. | -+.-..++ +...++++|++|+ ..|.|.++.+
T Consensus 116 ~~~~~~~~~~~~g~---~~~~~~~~~~~~GTtV~v~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~ 192 (312)
T TIGR00585 116 AADGLAWQALLEGG---MIEEIKPAPRPVGTTVEVRDLFYNLPVRRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHD 192 (312)
T ss_pred CCCcceEEEEECCC---cCcccccccCCCccEEEEchhhccCchhhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence 3455677774432 2322223345799999997 0 01111122 2468999999998 6677777775
Q ss_pred E
Q psy16067 1369 V 1369 (1386)
Q Consensus 1369 ~ 1369 (1386)
+
T Consensus 193 ~ 193 (312)
T TIGR00585 193 G 193 (312)
T ss_pred C
Confidence 3
No 17
>KOG0019|consensus
Probab=98.21 E-value=5.2e-07 Score=109.26 Aligned_cols=44 Identities=55% Similarity=0.878 Sum_probs=42.0
Q ss_pred CHHHHHHhhhcCCCchhHHHHHHHHhhccccCCCCCCCCcccccc
Q psy16067 1 IVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEDPQVELT 45 (1386)
Q Consensus 1 i~~~l~~~~~~d~~dk~vkdl~~ll~~tall~sgf~l~~~~~~~~ 45 (1386)
||++||+++++||+| +|||||.|||||||++|||+|+||+.+.+
T Consensus 592 ivk~L~~~~~~dk~d-~~k~lv~llfetALlssGfsl~dP~~~~~ 635 (656)
T KOG0019|consen 592 LVKTLRQLRESDKND-TAKDLVEQLYETALISAGFSLDDPQTMVG 635 (656)
T ss_pred HHHHHHHHHhcCcch-hHHHHHHHHHHHHHHHcCCCcCChHHHhh
Confidence 799999999999999 99999999999999999999999996655
No 18
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=97.75 E-value=9.9e-06 Score=100.62 Aligned_cols=52 Identities=40% Similarity=0.719 Sum_probs=45.7
Q ss_pred CHHHHHHhhhcCCCchhHHHHHHHHhhccccCCCCCCCCcc---------ccccccCCCCC
Q psy16067 1 IVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEDPQ---------VELTLSGRPDR 52 (1386)
Q Consensus 1 i~~~l~~~~~~d~~dk~vkdl~~ll~~tall~sgf~l~~~~---------~~~~l~~~~d~ 52 (1386)
||+.|.++++.|++|+.+++++.+||+||+|+|||.++||. +..+|+++.++
T Consensus 441 LIk~L~~~~~~d~~d~~~~~la~~LyD~AlL~~G~~l~dp~~F~~Ri~~lL~~~l~~~~~~ 501 (531)
T PF00183_consen 441 LIKKLLKLVEKDEDDELAKDLAEQLYDTALLASGFELEDPAAFAKRINKLLEKSLGVDPDA 501 (531)
T ss_dssp HHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTSS-SSHHHHHHHHHHHHHHTTC--STT
T ss_pred HHHHHHhhhcccchhhHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCcCC
Confidence 68999999999999999999999999999999999999998 66788888885
No 19
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=97.65 E-value=8.7e-05 Score=91.87 Aligned_cols=118 Identities=22% Similarity=0.318 Sum_probs=78.1
Q ss_pred CEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeecc-----eeEEEeecCCCc-ce
Q psy16067 1234 KTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAD-----KVTVTSKHNDDE-QY 1307 (1386)
Q Consensus 1234 ~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVad-----kV~V~Tk~~~~~-~~ 1307 (1386)
..|+|+|||+||+++++...|+..-.++ + |.. .....|++|+|+.++.+++. .|+|.|+..++. .+
T Consensus 75 ~~I~V~DNG~GIp~e~l~~iF~~f~~~S-K-~~~------~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~ 146 (535)
T PRK04184 75 YRVTVEDNGPGIPPEEIPKVFGKLLYGS-K-FHN------LRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAY 146 (535)
T ss_pred EEEEEEcCCCCCCHHHHHHHhhhhhccc-c-ccc------cccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEE
Confidence 5789999999999999998877653221 1 100 02345999999999998876 589999886654 44
Q ss_pred EEEeCC----CCceEEecCC-CCCCCCCcEEEEEeccchhhcCCHHHHHHHHHHhcCCC
Q psy16067 1308 IWESSA----GGSFTIKPDN-SEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFI 1361 (1386)
Q Consensus 1308 ~w~s~~----~~~y~i~~~~-~~~~~~GT~I~L~Lk~d~~e~l~~~~l~~lv~kys~fi 1361 (1386)
..+-.- .+.-.+.... .....+||+|.+.++.+.. ....++.++|++++-.-
T Consensus 147 ~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V~V~l~~~~~--~~~~~I~e~i~r~Al~n 203 (535)
T PRK04184 147 YFELKIDTKKNEPIILEREEVDWDRWHGTRVELEIEGDWY--RAKQRIYEYLKRTAIVN 203 (535)
T ss_pred EEEEEecccccCCeeccccccCCCCCCCEEEEEEECCcCh--hhHHHHHHHHHHHHHhC
Confidence 444321 1111112111 1234689999999987643 22788999999996544
No 20
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=97.60 E-value=0.00012 Score=89.85 Aligned_cols=127 Identities=21% Similarity=0.281 Sum_probs=80.4
Q ss_pred ceeeecCC---CCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeecce-----e
Q psy16067 1224 QDPIIPNK---EEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADK-----V 1295 (1386)
Q Consensus 1224 ~I~I~~d~---~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadk-----V 1295 (1386)
.|.|.+.. +.-.|+|+|||.||+.+++...|..+-.++ + |.. ...--|++|+|+.++.+++.. |
T Consensus 52 ~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~ts-K-~~~------~~~s~G~~GlGLs~~~~isq~~~G~~i 123 (488)
T TIGR01052 52 DIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGS-K-FHR------IIQSRGQQGIGISGAVLYSQMTTGKPV 123 (488)
T ss_pred eEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccC-c-ccc------ccccCCCccEehhHHHHHHHHcCCceE
Confidence 35554432 223799999999999999998887754432 2 110 122348999999999999874 9
Q ss_pred EEEeecCCCc-ceEEEeC-----CCCceEEecCCCCCC-CCCcEEEEEeccchhhcCCHHHHHHHHHHhcCC
Q psy16067 1296 TVTSKHNDDE-QYIWESS-----AGGSFTIKPDNSEPL-GRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQF 1360 (1386)
Q Consensus 1296 ~V~Tk~~~~~-~~~w~s~-----~~~~y~i~~~~~~~~-~~GT~I~L~Lk~d~~e~l~~~~l~~lv~kys~f 1360 (1386)
+|+|+..++. ++..+.. .+|. .+...+.... .+||+|.+.+...... ....++.++|++++-.
T Consensus 124 ~V~S~~~g~~~~~~~~~~id~~~n~G~-i~~~~~~~~~~~~GT~V~v~f~~~~~r-~~k~~i~e~l~~~Al~ 193 (488)
T TIGR01052 124 KVISSTGGEIYVYKMKLKIDVQKNEGE-IVEKGEWNKPGWRGTRIELEFKGVSYR-RSKQGVYEYLRRTAVA 193 (488)
T ss_pred EEEEecCCceEEEEEEEEecccccCCe-ecceeecCCCCCCceEEEEEECCceee-ccHHHHHHHHHHHHhh
Confidence 9999987543 2333332 1232 2221111111 3799999997654422 1457999999999643
No 21
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=97.46 E-value=6.6e-05 Score=95.63 Aligned_cols=75 Identities=44% Similarity=0.636 Sum_probs=56.7
Q ss_pred CHHHHHHhhhcCCCchhHHHHHHHHhhccccCCCCCCCCcc---------ccccccCCCCCC--chhhhccCCCCccccc
Q psy16067 1 IVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEDPQ---------VELTLSGRPDRS--PERLIAAVPIRQTCQH 69 (1386)
Q Consensus 1 i~~~l~~~~~~d~~dk~vkdl~~ll~~tall~sgf~l~~~~---------~~~~l~~~~d~~--~~~~~~~~p~~e~~~~ 69 (1386)
||+.|.++++++++++.+|+++.+||++|+|++||.++||. +.++|++++++. ++.++++-|+.|..++
T Consensus 614 iIk~L~~~~~~~~~~~~~~~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (701)
T PTZ00272 614 IIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEAAEAPVAETAPAEVTAG 693 (701)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcCCCccccccccccccccCCcccccc
Confidence 68899888888999999999999999999999999999999 445888998861 1233444566654432
Q ss_pred ccchhhh
Q psy16067 70 EDNRVYE 76 (1386)
Q Consensus 70 ~~~~~~~ 76 (1386)
.+-++|
T Consensus 694 -~~~~~~ 699 (701)
T PTZ00272 694 -TSSMEQ 699 (701)
T ss_pred -cccccc
Confidence 344443
No 22
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.28 E-value=0.00043 Score=88.08 Aligned_cols=132 Identities=23% Similarity=0.308 Sum_probs=82.4
Q ss_pred CCCceeeecCCCC-CEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeecceeEEEe
Q psy16067 1221 GFGQDPIIPNKEE-KTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVTS 1299 (1386)
Q Consensus 1221 g~G~I~I~~d~~~-~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV~V~T 1299 (1386)
|=..|+|.+..++ ..|+|+|||.||+.+++...+..-+.|.-..+ +.+. ...-.|..|.|..|.=-|+ +|+|+|
T Consensus 38 gat~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~-~dl~---~~~t~GfrGeAL~sI~~vs-~l~i~s 112 (617)
T PRK00095 38 GATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKIASL-DDLE---AIRTLGFRGEALPSIASVS-RLTLTS 112 (617)
T ss_pred CCCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCCh-hHhh---ccccCCcchhHHHhhhhce-EEEEEE
Confidence 3346888885443 48999999999999999876554333322111 1111 1234688889988888887 899999
Q ss_pred ecCC-CcceEEEeCCCCceEEecCCCCCCCCCcEEEEEe----ccchhhcC-----CHHHHHHHHHHhcCC
Q psy16067 1300 KHND-DEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHM----KEDQAEYI-----EEKKIKEIVKKHSQF 1360 (1386)
Q Consensus 1300 k~~~-~~~~~w~s~~~~~y~i~~~~~~~~~~GT~I~L~L----k~d~~e~l-----~~~~l~~lv~kys~f 1360 (1386)
|..+ +.+|...-.++..-.+. ......||+|++.= -+.-..|+ +...++++|++|+-.
T Consensus 113 ~~~~~~~~~~~~~~~G~~~~~~---~~~~~~GT~V~v~~LF~n~P~Rrkflk~~~~e~~~i~~~v~~~Al~ 180 (617)
T PRK00095 113 RTADAAEGWQIVYEGGEIVEVK---PAAHPVGTTIEVRDLFFNTPARRKFLKSEKTELGHIDDVVNRLALA 180 (617)
T ss_pred ecCCCCceEEEEecCCcCccee---cccCCCCCEEEechhhccCcHHHHhccCcHHHHHHHHHHHHHHhhc
Confidence 9865 34555554443221222 22247999999951 12222233 345789999999644
No 23
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=97.23 E-value=0.00049 Score=87.30 Aligned_cols=125 Identities=20% Similarity=0.285 Sum_probs=82.2
Q ss_pred ceeeecCCCC--CEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeecce-----eE
Q psy16067 1224 QDPIIPNKEE--KTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADK-----VT 1296 (1386)
Q Consensus 1224 ~I~I~~d~~~--~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadk-----V~ 1296 (1386)
.|.|.+...+ -.|+|+|||.||+++++..-|...+.+.+ |.. .+ .--|+.|+|.-++.+++.- |.
T Consensus 70 ~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f~~-----~~-~srG~rG~GLglai~~sqlt~GgpI~ 141 (795)
T PRK14868 70 DIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSR--FHA-----RE-QSRGQQGIGISAAVLYSQLTSGKPAK 141 (795)
T ss_pred eEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccc--ccc-----cc-cCCCCCceehHHHHHHHHHcCCCcEE
Confidence 4555554443 37999999999999999988877764432 110 00 1248899999999988864 89
Q ss_pred EEeecCCC-cceEEEeCCCCc---eEE--ecCCCCCCCCCcEEEEEeccchhhcCCHHHHHHHHHHhcC
Q psy16067 1297 VTSKHNDD-EQYIWESSAGGS---FTI--KPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQ 1359 (1386)
Q Consensus 1297 V~Tk~~~~-~~~~w~s~~~~~---y~i--~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~l~~lv~kys~ 1359 (1386)
|+|+..+. .++.|+..-++. -.| .....-...+||+|.+.|.-. |--..++.++|++++-
T Consensus 142 I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~Lf~N---~pAR~kI~eyl~r~Al 207 (795)
T PRK14868 142 ITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELEMEAN---MRARQQLHDYIKHTAV 207 (795)
T ss_pred EEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEEEEcc---CchhhhHHHHHHHHHh
Confidence 99997654 345444332222 122 111122357899999998543 4456778999998864
No 24
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.01 E-value=0.0011 Score=79.20 Aligned_cols=124 Identities=20% Similarity=0.262 Sum_probs=78.6
Q ss_pred CCCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEE-----EeecceeEEEeecCC-C
Q psy16067 1231 KEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-----YLVADKVTVTSKHND-D 1304 (1386)
Q Consensus 1231 ~~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~-----FmVadkV~V~Tk~~~-~ 1304 (1386)
++--+++|+|||+|+..+.+=+-||++-.+++- ....| --||+|||.=+| ---+.-|.|+|+..+ +
T Consensus 70 ~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKf--h~~~Q------sRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~ 141 (538)
T COG1389 70 KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKF--HRNIQ------SRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSG 141 (538)
T ss_pred CceEEEEEecCCCCCChhHhHHHHHHHhccchh--hhhhh------ccccccccHHHHHHHHHhcCCCceEEEecCCCCc
Confidence 445699999999999999999999988776432 11222 359999997444 445678999998765 3
Q ss_pred cceEEEeCCC---CceEE-ecCC--CCCCCCCcEEEEEeccchhhcCCHHH-HHHHHHHhcCCCCcc
Q psy16067 1305 EQYIWESSAG---GSFTI-KPDN--SEPLGRGTKIVLHMKEDQAEYIEEKK-IKEIVKKHSQFIGYP 1364 (1386)
Q Consensus 1305 ~~~~w~s~~~---~~y~i-~~~~--~~~~~~GT~I~L~Lk~d~~e~l~~~~-l~~lv~kys~fi~~P 1364 (1386)
..+..+-.-+ .+-.| +... ....-+||+|.|+++.++. -...+ +.++||+-+---|+.
T Consensus 142 ~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~~~~~~~--~~~~qgi~eYlkrtaiinPhA 206 (538)
T COG1389 142 TAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELELKGVWY--RAKRQGIYEYLKRTAIINPHA 206 (538)
T ss_pred ceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEEecccch--hhcccCHHHHHHHHhhcCCce
Confidence 4444332211 12222 2211 2223599999999998743 22333 677777655444443
No 25
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.0016 Score=83.02 Aligned_cols=129 Identities=23% Similarity=0.297 Sum_probs=85.6
Q ss_pred eeeecCCCCCceeeecCCCCCE-EEEEeCCCccCHHHHHhhccceeecchHHHHH--HHhcCCccccccccccce----e
Q psy16067 1214 VYFFLFPGFGQDPIIPNKEEKT-LTIIDSGIGMTKADLVNNLGTIAKSGTKAFME--ALQAGADISMIGQFGVGF----Y 1286 (1386)
Q Consensus 1214 ~~~~c~~g~G~I~I~~d~~~~~-L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e--~~~~~~~~~~IGqFGIGF----~ 1286 (1386)
|+-+...|=.+|.|.++..+.. |.|+|||+||+++||.-.+..=|.|-=+.+-+ .+.. .|| |
T Consensus 32 VENSlDAGAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~T-----------lGFRGEAL 100 (638)
T COG0323 32 VENSLDAGATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIRT-----------LGFRGEAL 100 (638)
T ss_pred HhcccccCCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhhc-----------cCccHHHH
Confidence 5556677777999999988876 99999999999999998887777775333222 2221 222 1
Q ss_pred EEEeecceeEEEeecCC-CcceEEEeCCCCce-EEecCCCCCCCCCcEEEEE------------eccchhhcCCHHHHHH
Q psy16067 1287 SAYLVADKVTVTSKHND-DEQYIWESSAGGSF-TIKPDNSEPLGRGTKIVLH------------MKEDQAEYIEEKKIKE 1352 (1386)
Q Consensus 1287 S~FmVadkV~V~Tk~~~-~~~~~w~s~~~~~y-~i~~~~~~~~~~GT~I~L~------------Lk~d~~e~l~~~~l~~ 1352 (1386)
++-----|++|+||..+ ..++.|.-.|++.- ++.+. ....||+|.+. ||.+. .|-..+.+
T Consensus 101 ~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p~---a~~~GTtVeV~dLF~NtPaRrKflks~~---~E~~~i~~ 174 (638)
T COG0323 101 ASIASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKPA---AHPVGTTVEVRDLFYNTPARRKFLKSEK---TEFGHITE 174 (638)
T ss_pred HHHHhhheeEEEeecCCcCceEEEEecCCcccccccCC---CCCCCCEEEehHhhccChHHHHhhcccH---HHHHHHHH
Confidence 22222348999999654 45666666666443 44432 33569999984 34433 44567888
Q ss_pred HHHHhcC
Q psy16067 1353 IVKKHSQ 1359 (1386)
Q Consensus 1353 lv~kys~ 1359 (1386)
+|++|+-
T Consensus 175 vv~r~AL 181 (638)
T COG0323 175 LINRYAL 181 (638)
T ss_pred HHHHHHh
Confidence 9999964
No 26
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=96.59 E-value=0.0044 Score=79.15 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=87.7
Q ss_pred CceeeecCCCCCEEEEEeCCCccCHHHHHh--------hccceeecchHHHHHHHhcCCccccccccccceeEEEeecce
Q psy16067 1223 GQDPIIPNKEEKTLTIIDSGIGMTKADLVN--------NLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADK 1294 (1386)
Q Consensus 1223 G~I~I~~d~~~~~L~I~DnGiGMt~~dl~~--------~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadk 1294 (1386)
.+|+|+++.+ +.|+|+|||.||..+++.. .|+++- .|+|- ....-.---|.-|+|.-++=.++.+
T Consensus 59 ~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lh-agsKf-----~~~~yk~SgGl~GvGls~vNalS~~ 131 (631)
T PRK05559 59 KRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLH-AGGKF-----SNKAYKFSGGLHGVGVSVVNALSSR 131 (631)
T ss_pred CEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeecc-ccCcc-----CCccccccCcccccchhhhhhheee
Confidence 4799999877 4899999999999987776 455432 23221 1111112469999999999999999
Q ss_pred eEEEeecCCCcceEEEeCCCC-ceEEecCCCC-CCCCCcEEEEEeccch--hhcCCHHHHHHHHHHhcCCC-CcceEEEE
Q psy16067 1295 VTVTSKHNDDEQYIWESSAGG-SFTIKPDNSE-PLGRGTKIVLHMKEDQ--AEYIEEKKIKEIVKKHSQFI-GYPIKLLV 1369 (1386)
Q Consensus 1295 V~V~Tk~~~~~~~~w~s~~~~-~y~i~~~~~~-~~~~GT~I~L~Lk~d~--~e~l~~~~l~~lv~kys~fi-~~PI~l~~ 1369 (1386)
++|+|++.+.. |..+-..+- .-.+...... ....||+|+......- ..-++.+.|.+.+++++-.. ..-|.++.
T Consensus 132 l~V~s~r~g~~-~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~PD~~iF~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d 210 (631)
T PRK05559 132 LEVEVKRDGKV-YRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWPDPKIFDSPKFSPERLKERLRSKAFLLPGLTITLND 210 (631)
T ss_pred EEEEEEeCCeE-EEEEEECCcCccCccccccccCCCCCcEEEEEECHHHcCCcccCHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 99999975433 444433221 1111111111 1469999999664321 11246788899999886433 23445554
Q ss_pred ee
Q psy16067 1370 EK 1371 (1386)
Q Consensus 1370 ~~ 1371 (1386)
++
T Consensus 211 ~~ 212 (631)
T PRK05559 211 ER 212 (631)
T ss_pred CC
Confidence 43
No 27
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=96.49 E-value=0.007 Score=76.91 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=83.6
Q ss_pred CceeeecCCCCCEEEEEeCCCccCHHHHHh-------hccceeecchHHHHHHHhcCCccccccccccceeEEEeeccee
Q psy16067 1223 GQDPIIPNKEEKTLTIIDSGIGMTKADLVN-------NLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKV 1295 (1386)
Q Consensus 1223 G~I~I~~d~~~~~L~I~DnGiGMt~~dl~~-------~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV 1295 (1386)
..|.|+++.++ .|+|+|||.||..+.... -+.++-.+|.+ | +...-.---|.-|+|.-|+=.++.++
T Consensus 23 t~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~k-f----d~~~~k~s~G~~G~Gls~vnalS~~l 96 (594)
T smart00433 23 DTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGK-F----DDDAYKVSGGLHGVGASVVNALSTEF 96 (594)
T ss_pred CEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCC-C----CCCCccccCCcccchHHHHHHhcCce
Confidence 37999998774 999999999998532110 11122222222 1 11111124699999999999999999
Q ss_pred EEEeecCCCcceEEEeCCCCceEEecC--CCCCCCCCcEEEEEeccchhhcCC-----HHHHHHHHHHhcCCC-CcceEE
Q psy16067 1296 TVTSKHNDDEQYIWESSAGGSFTIKPD--NSEPLGRGTKIVLHMKEDQAEYIE-----EKKIKEIVKKHSQFI-GYPIKL 1367 (1386)
Q Consensus 1296 ~V~Tk~~~~~~~~w~s~~~~~y~i~~~--~~~~~~~GT~I~L~Lk~d~~e~l~-----~~~l~~lv~kys~fi-~~PI~l 1367 (1386)
+|+|+..+.. |..+-..+|. .+.+. .+...+.||+|+. .+|..-|.. ...|.+.++.++-.- ..-|.+
T Consensus 97 ~v~~~~~g~~-~~~~~~~~G~-~~~~~~~~~~~~~~GT~V~F--~Pd~~~F~~~~~~~~~~i~~rl~~~A~l~pgl~i~l 172 (594)
T smart00433 97 EVEVARDGKE-YKQSFSNNGK-PLSEPKIIGDTKKDGTKVTF--KPDLEIFGMTTDDDFELLKRRLRELAFLNKGVKITL 172 (594)
T ss_pred EEEEEeCCcE-EEEEEeCCCe-ECccceecCCCCCCCcEEEE--EECHHHhCCcccchHHHHHHHHHHHHhcCCCcEEEE
Confidence 9999987433 5544433232 11111 1223479999995 566666654 377888899885333 244444
Q ss_pred EEe
Q psy16067 1368 LVE 1370 (1386)
Q Consensus 1368 ~~~ 1370 (1386)
+.+
T Consensus 173 ~de 175 (594)
T smart00433 173 NDE 175 (594)
T ss_pred ecc
Confidence 444
No 28
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=96.28 E-value=0.0061 Score=77.34 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=74.2
Q ss_pred ceeeecCCCC---CEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeecce-----e
Q psy16067 1224 QDPIIPNKEE---KTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADK-----V 1295 (1386)
Q Consensus 1224 ~I~I~~d~~~---~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadk-----V 1295 (1386)
.|.|.+...+ -.|+|+|||.||+++++..-|..+- .|+|- .. -..--|+.|+|+-++-++++. |
T Consensus 60 ~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~-atSK~-~~------~~qS~G~rG~GLa~a~~vsql~~G~pI 131 (659)
T PRK14867 60 DIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKML-AGSKM-HR------LIQSRGQQGIGAAGVLLFSQITTGKPL 131 (659)
T ss_pred eEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhcccc-ccCcc-cc------eeccCCCCcccHHHHHHHHHHhcCCcE
Confidence 3555543322 3599999999999999998887742 22221 00 012348899999888777655 5
Q ss_pred EEEeecCCCcc--eEEEeCC--CCceEEecCCCCCCCCCcEEEEEeccchhhcCCHHHHHHHHHHhcC
Q psy16067 1296 TVTSKHNDDEQ--YIWESSA--GGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQ 1359 (1386)
Q Consensus 1296 ~V~Tk~~~~~~--~~w~s~~--~~~y~i~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~l~~lv~kys~ 1359 (1386)
.|.|+..++.. +.|...- .+.-.+.........+||+|.+.+++-...-. +.++.++|++++-
T Consensus 132 ~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~~~~~~~GT~Ie~~V~dLFynR~-E~~i~e~l~r~AL 198 (659)
T PRK14867 132 KITTSTGDGKIHEMEIKMSVEKNEGDIVSHKVREGFWRGTRVEGEFKEVTYNRR-EQGPFEYLRRISL 198 (659)
T ss_pred EEEEEcCCCEEEEEEEEEEecccCCeecccccCCCCCCCcEEEEEEeeceechh-hHHHHHHHHHHHH
Confidence 88888755442 2222221 22222221111234689999987765211111 3348888888863
No 29
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=96.27 E-value=0.014 Score=75.40 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=86.2
Q ss_pred CceeeecCCCCCEEEEEeCCCccCHH----------HHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeec
Q psy16067 1223 GQDPIIPNKEEKTLTIIDSGIGMTKA----------DLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA 1292 (1386)
Q Consensus 1223 G~I~I~~d~~~~~L~I~DnGiGMt~~----------dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVa 1292 (1386)
..|+|+++.+ +.|+|+|||.||..+ |++ .+.-.+|.|- +.+.-.---|.-|+|.-++=.++
T Consensus 59 ~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv---lt~lhAggKf-----d~~~ykvSgGlhGvG~svvNAlS 129 (756)
T PRK14939 59 DDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI---MTVLHAGGKF-----DQNSYKVSGGLHGVGVSVVNALS 129 (756)
T ss_pred CEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe---eeeecccCCC-----CCCcccccCCccCccceEeehcc
Confidence 3799999876 599999999999986 444 3344555442 11111114588999999999999
Q ss_pred ceeEEEeecCCCcceEEEeCCCCceEEecC--CCCCCCCCcEEEEEeccch--hhcCCHHHHHHHHHHhcCCCC--cceE
Q psy16067 1293 DKVTVTSKHNDDEQYIWESSAGGSFTIKPD--NSEPLGRGTKIVLHMKEDQ--AEYIEEKKIKEIVKKHSQFIG--YPIK 1366 (1386)
Q Consensus 1293 dkV~V~Tk~~~~~~~~w~s~~~~~y~i~~~--~~~~~~~GT~I~L~Lk~d~--~e~l~~~~l~~lv~kys~fi~--~PI~ 1366 (1386)
++++|+|++.+.. |..+-..+ . .+.+. .+...+.||+|+......- ..-++.+.|.+.++.++ |+. .-|.
T Consensus 130 ~~l~v~v~r~gk~-~~q~f~~G-~-~~~~l~~~g~~~~~GT~V~F~PD~~iF~~~~~~~~~i~~rl~elA-~lnpgl~i~ 205 (756)
T PRK14939 130 EWLELTIRRDGKI-HEQEFEHG-V-PVAPLKVVGETDKTGTEVRFWPSPEIFENTEFDYDILAKRLRELA-FLNSGVRIR 205 (756)
T ss_pred CeEEEEEEeCCeE-EEEEEecC-c-cccCccccCCcCCCCcEEEEEECHHHcCCcccCHHHHHHHHHHHh-hcCCCCEEE
Confidence 9999999875543 44333322 1 12211 1223469999999554332 11256788888898886 453 4455
Q ss_pred EEEee
Q psy16067 1367 LLVEK 1371 (1386)
Q Consensus 1367 l~~~~ 1371 (1386)
++.++
T Consensus 206 l~der 210 (756)
T PRK14939 206 LKDER 210 (756)
T ss_pred EeccC
Confidence 55443
No 30
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=96.01 E-value=0.019 Score=73.56 Aligned_cols=138 Identities=20% Similarity=0.271 Sum_probs=85.5
Q ss_pred CceeeecCCCCCEEEEEeCCCccCHHHHH-------hhccceeecchHHHHHHHhcCCccccccccccceeEEEeeccee
Q psy16067 1223 GQDPIIPNKEEKTLTIIDSGIGMTKADLV-------NNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKV 1295 (1386)
Q Consensus 1223 G~I~I~~d~~~~~L~I~DnGiGMt~~dl~-------~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV 1295 (1386)
.+|+|+++.+ +.|+|+|||.||..+.-. .-+.++-.+|.+- +...-.---|.-|+|.-|+=.+++++
T Consensus 59 ~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kf-----d~~~yk~s~G~~G~Gls~vnalS~~~ 132 (638)
T PRK05644 59 DHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKF-----GGGGYKVSGGLHGVGVSVVNALSTWL 132 (638)
T ss_pred CEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeecccCcc-----CCCcccccCCccccchhhhhheeceE
Confidence 4899999875 599999999999885211 1123333444331 11111124699999999999999999
Q ss_pred EEEeecCCCcceEEEeCCCCceEEecCC--CCCCCCCcEEEEEeccchhhc----CCHHHHHHHHHHhcCCC-CcceEEE
Q psy16067 1296 TVTSKHNDDEQYIWESSAGGSFTIKPDN--SEPLGRGTKIVLHMKEDQAEY----IEEKKIKEIVKKHSQFI-GYPIKLL 1368 (1386)
Q Consensus 1296 ~V~Tk~~~~~~~~w~s~~~~~y~i~~~~--~~~~~~GT~I~L~Lk~d~~e~----l~~~~l~~lv~kys~fi-~~PI~l~ 1368 (1386)
+|+|++.+. .|..+-.. |. .+.+.. +.....||+|+. .+|..-| ++...|.+.|+.++-.- ..-|.++
T Consensus 133 ~v~t~r~g~-~~~~~~~~-G~-~~~~~~~~~~~~~~GT~I~F--~Pd~~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~ 207 (638)
T PRK05644 133 EVEVKRDGK-IYYQEYER-GV-PVTPLEVIGETDETGTTVTF--KPDPEIFETTEFDYDTLATRLRELAFLNKGLKITLT 207 (638)
T ss_pred EEEEEeCCc-EEEEEEEC-Ce-EccCccccCCcCCCCcEEEE--EECHHHcCCcccCHHHHHHHHHHHHhhCCCcEEEEE
Confidence 999987543 44443333 21 221111 222479999995 5554433 46688999999986433 3445555
Q ss_pred Eee
Q psy16067 1369 VEK 1371 (1386)
Q Consensus 1369 ~~~ 1371 (1386)
.++
T Consensus 208 ~er 210 (638)
T PRK05644 208 DER 210 (638)
T ss_pred ecc
Confidence 443
No 31
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=95.95 E-value=0.017 Score=74.38 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=84.6
Q ss_pred CceeeecCCCCCEEEEEeCCCccCHHHHHh--------hccceeecchHHHHHHHhcCCccccccccccceeEEEeecce
Q psy16067 1223 GQDPIIPNKEEKTLTIIDSGIGMTKADLVN--------NLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADK 1294 (1386)
Q Consensus 1223 G~I~I~~d~~~~~L~I~DnGiGMt~~dl~~--------~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadk 1294 (1386)
.+|+|.++.+ +.|+|+|||.||..+ ... -+.++-.+|.+ | .......--|.-|+|.-|+=.++++
T Consensus 52 ~~I~V~i~~~-g~I~V~DnG~GIp~~-~h~~~ki~~~e~i~~~l~ag~k-f----~~~~~k~s~G~~G~gl~~inalS~~ 124 (654)
T TIGR01059 52 DTINVTINDD-GSVTVEDNGRGIPVD-IHPEEGISAVEVVLTVLHAGGK-F----DKDSYKVSGGLHGVGVSVVNALSEW 124 (654)
T ss_pred CEEEEEEeCC-CcEEEEEeCCCcCcc-ccCcCCCCchHHheeeecccCc-c----CCCcceecCCccchhHHHHHHhcCe
Confidence 4799999864 569999999999975 111 12333334433 2 1111113469999999999999999
Q ss_pred eEEEeecCCCcceEEEeCCCCceEEec--CCCCCCCCCcEEEEEeccchhhc----CCHHHHHHHHHHhcCCC-CcceEE
Q psy16067 1295 VTVTSKHNDDEQYIWESSAGGSFTIKP--DNSEPLGRGTKIVLHMKEDQAEY----IEEKKIKEIVKKHSQFI-GYPIKL 1367 (1386)
Q Consensus 1295 V~V~Tk~~~~~~~~w~s~~~~~y~i~~--~~~~~~~~GT~I~L~Lk~d~~e~----l~~~~l~~lv~kys~fi-~~PI~l 1367 (1386)
++|+|++.+.. |..+-..+-. +.+ ..+.....||+|+.+..+ .-| ++...|.+.|+.++-.- ..-|.+
T Consensus 125 l~v~~~~~g~~-~~~~~~~G~~--~~~l~~~~~~~~~GT~V~F~pdp--~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l 199 (654)
T TIGR01059 125 LEVTVFRDGKI-YRQEFERGIP--LGPLEVVGETKKTGTTVRFWPDP--EIFETTEFDFDILAKRLRELAFLNSGVKISL 199 (654)
T ss_pred EEEEEEECCeE-EEEEEeCCCc--ccCceeccCCCCCCcEEEEEECh--HHhCCcccCHHHHHHHHHHhhccCCCeEEEE
Confidence 99999876533 4444333211 111 112345799999955443 344 36788999999997332 234444
Q ss_pred EEe
Q psy16067 1368 LVE 1370 (1386)
Q Consensus 1368 ~~~ 1370 (1386)
+.+
T Consensus 200 ~~e 202 (654)
T TIGR01059 200 EDE 202 (654)
T ss_pred Eee
Confidence 544
No 32
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=95.94 E-value=0.015 Score=74.31 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=85.9
Q ss_pred ceeeecCCCCCEEEEEeCCCccCHHH--------HHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeeccee
Q psy16067 1224 QDPIIPNKEEKTLTIIDSGIGMTKAD--------LVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKV 1295 (1386)
Q Consensus 1224 ~I~I~~d~~~~~L~I~DnGiGMt~~d--------l~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV 1295 (1386)
+|+|+++.+ +.|+|+|||.||..++ +.-.|++. ..|+|- +...-.--.|.-|+|.-|+=.|++++
T Consensus 53 ~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~l-hagsK~-----~~~~~~~SgG~~GvGls~vnalS~~l 125 (625)
T TIGR01055 53 IIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTL-HAGGKF-----SNKNYHFSGGLHGVGISVVNALSKRV 125 (625)
T ss_pred EEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhcc-cccCCC-----CCCcceecCCCcchhHHHHHHhcCeE
Confidence 799999877 8999999999999877 44333332 333321 11111124688899999999999999
Q ss_pred EEEeecCCCcceEEEeCCCCc-eEEecCCCC-CCCCCcEEEEEeccchh--hcCCHHHHHHHHHHhcCCC-CcceEEEEe
Q psy16067 1296 TVTSKHNDDEQYIWESSAGGS-FTIKPDNSE-PLGRGTKIVLHMKEDQA--EYIEEKKIKEIVKKHSQFI-GYPIKLLVE 1370 (1386)
Q Consensus 1296 ~V~Tk~~~~~~~~w~s~~~~~-y~i~~~~~~-~~~~GT~I~L~Lk~d~~--e~l~~~~l~~lv~kys~fi-~~PI~l~~~ 1370 (1386)
+|.|++.+.. |.++-..+.. -.+...... ....||+|+........ .-++..+|.+++++++-.- ..-|.++.+
T Consensus 126 ~v~~~r~g~~-~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~de 204 (625)
T TIGR01055 126 KIKVYRQGKL-YSIAFENGAKVTDLISAGTCGKRLTGTSVHFTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDE 204 (625)
T ss_pred EEEEEECCeE-EEEEEECCeEccccccccccCCCCCCeEEEEEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEeec
Confidence 9999976543 4444433311 011111111 23589999985544211 1234578899999885443 355556554
Q ss_pred e
Q psy16067 1371 K 1371 (1386)
Q Consensus 1371 ~ 1371 (1386)
+
T Consensus 205 r 205 (625)
T TIGR01055 205 V 205 (625)
T ss_pred C
Confidence 3
No 33
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=95.88 E-value=0.0039 Score=61.09 Aligned_cols=64 Identities=20% Similarity=0.352 Sum_probs=45.8
Q ss_pred CceeeecC--CCCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeecceeEE
Q psy16067 1223 GQDPIIPN--KEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTV 1297 (1386)
Q Consensus 1223 G~I~I~~d--~~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV~V 1297 (1386)
+.|.|.+. .+.-.|+|+|+|.||+.+++...+.....+.. +....+++|+|++.+..++++...
T Consensus 25 ~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-----------~~~~~~g~GlGL~~~~~~~~~~~g 90 (111)
T PF02518_consen 25 GKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDK-----------SETSISGHGLGLYIVKQIAERHGG 90 (111)
T ss_dssp SEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-----------SSGGSSSSSHHHHHHHHHHHHTTE
T ss_pred CEEEEEEEEecCeEEEEEEeccccccccccccchhhcccccc-----------cccccCCCChHHHHHHHHHHHCCC
Confidence 45666654 45678999999999999998876644332221 224567799999999999887543
No 34
>PTZ00130 heat shock protein 90; Provisional
Probab=95.85 E-value=0.0047 Score=79.63 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=45.2
Q ss_pred CHHHHHHhhhcCCCchhHHHHHHHHhhccccCCCCCCCCcc---------ccccccCCCCC
Q psy16067 1 IVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEDPQ---------VELTLSGRPDR 52 (1386)
Q Consensus 1 i~~~l~~~~~~d~~dk~vkdl~~ll~~tall~sgf~l~~~~---------~~~~l~~~~d~ 52 (1386)
||+.|.+++.+|++|+.+++++.+||++|+|++||.|+||. +..+|++++++
T Consensus 702 ii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~~~~~~ 762 (814)
T PTZ00130 702 IMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLGVDNNL 762 (814)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCccc
Confidence 57888887778889989999999999999999999999999 44567787774
No 35
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=92.50 E-value=0.7 Score=58.37 Aligned_cols=142 Identities=16% Similarity=0.175 Sum_probs=88.4
Q ss_pred ceeeecCCCCCEEEEEeCCCccCHHHH-------HhhccceeecchHHHHHHHhcCCccc-cccccccceeEEEeeccee
Q psy16067 1224 QDPIIPNKEEKTLTIIDSGIGMTKADL-------VNNLGTIAKSGTKAFMEALQAGADIS-MIGQFGVGFYSAYLVADKV 1295 (1386)
Q Consensus 1224 ~I~I~~d~~~~~L~I~DnGiGMt~~dl-------~~~LgtIa~Sgtk~f~e~~~~~~~~~-~IGqFGIGF~S~FmVadkV 1295 (1386)
.|.|+++ +++.|+|+|||-||.-+.= ..-..|.-..|.|- +. ...+ -=|--|||.=-+=-+++++
T Consensus 59 ~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKF-----d~-~~YkvSGGLHGVG~SVVNALS~~l 131 (635)
T COG0187 59 RIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKF-----DN-DSYKVSGGLHGVGVSVVNALSTWL 131 (635)
T ss_pred EEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEeeccCccc-----CC-CccEeecCCCccceEEEecccceE
Confidence 7999998 7789999999999987531 12234445555442 11 1111 2388999999999999999
Q ss_pred EEEeecCCCcceEEEeCCCCc-eEEecCC-CCCCCCCcEEEEEeccchh--hcCCHHHHHHHHHHhcCCCC-cceEEEEe
Q psy16067 1296 TVTSKHNDDEQYIWESSAGGS-FTIKPDN-SEPLGRGTKIVLHMKEDQA--EYIEEKKIKEIVKKHSQFIG-YPIKLLVE 1370 (1386)
Q Consensus 1296 ~V~Tk~~~~~~~~w~s~~~~~-y~i~~~~-~~~~~~GT~I~L~Lk~d~~--e~l~~~~l~~lv~kys~fi~-~PI~l~~~ 1370 (1386)
+|++++++.. |.-.-+.+.. -.+.... ....+.||+|+.+..++-. .-++...|++.++.++-..+ .-|.+..+
T Consensus 132 ~v~v~r~gk~-y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~ 210 (635)
T COG0187 132 EVEVKRDGKI-YRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKPDPEIFGETEFDYEILKRRLRELAFLNKGVKITLTDE 210 (635)
T ss_pred EEEEEECCEE-EEEEEeCCCcCCCceecccCCCCCCccEEEEEcChHhcCCcccCHHHHHHHHHHHhccCCCCEEEEEec
Confidence 9999887533 3322222211 1122111 2344679998877655421 22678889999998855543 66777655
Q ss_pred eee
Q psy16067 1371 KER 1373 (1386)
Q Consensus 1371 ~~~ 1373 (1386)
...
T Consensus 211 r~~ 213 (635)
T COG0187 211 RTG 213 (635)
T ss_pred cCC
Confidence 543
No 36
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=92.44 E-value=0.51 Score=60.81 Aligned_cols=138 Identities=20% Similarity=0.270 Sum_probs=83.9
Q ss_pred ceeeecCCCCCEEEEEeCCCccCHHHHHh--------hccceeecchHHHHHHHhcCCccccccccccceeEEEeeccee
Q psy16067 1224 QDPIIPNKEEKTLTIIDSGIGMTKADLVN--------NLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKV 1295 (1386)
Q Consensus 1224 ~I~I~~d~~~~~L~I~DnGiGMt~~dl~~--------~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV 1295 (1386)
.|+|++++ ++.++|+|||-||..+ +.. ...|.-.+|.+. +.+.-.-.-|.-|||.=.+=.+++++
T Consensus 57 ~I~V~i~~-dgsitV~DnGrGIPv~-~h~~~~~~~~E~v~t~LhaGgkf-----d~~~ykvSGGlhGvG~svvNAlS~~~ 129 (637)
T TIGR01058 57 NITVTLHK-DNSITVQDDGRGIPTG-IHQDGNISTVETVFTVLHAGGKF-----DQGGYKTAGGLHGVGASVVNALSSWL 129 (637)
T ss_pred EEEEEEcC-CCeEEEEECCCcccCc-ccCcCCCccceeEEEEecccCcC-----CCCcccccCCcccccccccceeeceE
Confidence 79999995 4699999999998753 221 122333444331 11111123589999999999999999
Q ss_pred EEEeecCCCc-ceEEEeCCCCceEEecC--CCCCCCCCcEEEEEeccchh--hcCCHHHHHHHHHHhcCCC-CcceEEEE
Q psy16067 1296 TVTSKHNDDE-QYIWESSAGGSFTIKPD--NSEPLGRGTKIVLHMKEDQA--EYIEEKKIKEIVKKHSQFI-GYPIKLLV 1369 (1386)
Q Consensus 1296 ~V~Tk~~~~~-~~~w~s~~~~~y~i~~~--~~~~~~~GT~I~L~Lk~d~~--e~l~~~~l~~lv~kys~fi-~~PI~l~~ 1369 (1386)
+|++++++.. ...|+. +|. .+.+. .+...+.||+|+.....+-. .-++.+.|++.++..+-.. ..-|+++.
T Consensus 130 ~V~v~r~gk~~~q~f~~--Gg~-~~~~l~~~~~~~~~GT~V~F~PD~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~d 206 (637)
T TIGR01058 130 EVTVKRDGQIYQQRFEN--GGK-IVQSLKKIGTTKKTGTLVHFHPDPTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTD 206 (637)
T ss_pred EEEEEECCEEEEEEEec--CCc-CcCCcccccCCCCCceEEEEEeCHHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 9999865432 122432 111 12221 12334699999887765421 1256778888888886444 35666665
Q ss_pred ee
Q psy16067 1370 EK 1371 (1386)
Q Consensus 1370 ~~ 1371 (1386)
++
T Consensus 207 er 208 (637)
T TIGR01058 207 KR 208 (637)
T ss_pred cC
Confidence 43
No 37
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=89.92 E-value=1.9 Score=57.01 Aligned_cols=143 Identities=22% Similarity=0.239 Sum_probs=85.1
Q ss_pred ceeeecCCCCCEEEEEeCCCccCHHHH-------HhhccceeecchHHHHHH----------------------------
Q psy16067 1224 QDPIIPNKEEKTLTIIDSGIGMTKADL-------VNNLGTIAKSGTKAFMEA---------------------------- 1268 (1386)
Q Consensus 1224 ~I~I~~d~~~~~L~I~DnGiGMt~~dl-------~~~LgtIa~Sgtk~f~e~---------------------------- 1268 (1386)
.|.|+++++ +.++|+|||-||.-+.- .....|+-.+|.|- -..
T Consensus 152 ~I~V~i~~D-gsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF-~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~ 229 (903)
T PTZ00109 152 KITVVLHKD-GSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKF-QDTFPKNSRSDKSEDKNDTKSSKKGKSSHVK 229 (903)
T ss_pred EEEEEEcCC-CeEEEEeCCccccccccccCCCcceeEEEEEeccCccc-cCccccccccccccccccccccccccccccc
Confidence 799999874 79999999999865321 11224555666442 110
Q ss_pred -----Hhc--CCcc-ccccccccceeEEEeecceeEEEeecCCCcceEEEeCCCCceEEecCC--CCC-CCCCcEEEEEe
Q psy16067 1269 -----LQA--GADI-SMIGQFGVGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDN--SEP-LGRGTKIVLHM 1337 (1386)
Q Consensus 1269 -----~~~--~~~~-~~IGqFGIGF~S~FmVadkV~V~Tk~~~~~~~~w~s~~~~~y~i~~~~--~~~-~~~GT~I~L~L 1337 (1386)
... .... ---|.-|||.=.+=-++++++|++++.+. .|.-+-. .| -.+.+.. +.. .++||+|+...
T Consensus 230 ~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdGK-~y~q~F~-rG-~~v~pLkvig~~~~~tGT~VtF~P 306 (903)
T PTZ00109 230 GPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGGK-IYSIELS-KG-KVTKPLSVFSCPLKKRGTTIHFLP 306 (903)
T ss_pred ccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECCE-EEEEEeC-CC-cccCCccccCCcCCCCceEEEEEe
Confidence 000 0011 14689999999999999999999987653 2322222 12 1122211 222 36899998887
Q ss_pred c-cc-hhh-c--------------CCHHHHHHHHHHhcCCC-CcceEEEEee
Q psy16067 1338 K-ED-QAE-Y--------------IEEKKIKEIVKKHSQFI-GYPIKLLVEK 1371 (1386)
Q Consensus 1338 k-~d-~~e-~--------------l~~~~l~~lv~kys~fi-~~PI~l~~~~ 1371 (1386)
. ++ ... . ++.+.|++-++..+-.. ..-|+++.++
T Consensus 307 D~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElAfLNpGL~I~L~DeR 358 (903)
T PTZ00109 307 DYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELSYLNPGLTFYLVDER 358 (903)
T ss_pred CcchhcCccccccccccccccccccCHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 7 54 211 1 35678888888886443 3556665544
No 38
>KOG1979|consensus
Probab=89.51 E-value=0.94 Score=56.42 Aligned_cols=135 Identities=21% Similarity=0.288 Sum_probs=81.8
Q ss_pred eeeecCCCCCceeeecCCCC-CEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccc--eeEEEe
Q psy16067 1214 VYFFLFPGFGQDPIIPNKEE-KTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVG--FYSAYL 1290 (1386)
Q Consensus 1214 ~~~~c~~g~G~I~I~~d~~~-~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIG--F~S~Fm 1290 (1386)
|+-++..+-..|.|.+-.++ +-|.|+|||-|+-++||---=-...-|-=..|-+ + .-|..||.- .+|.-.
T Consensus 36 iENSLDA~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~kFED-L------~~lsTyGFRGEALASiS 108 (694)
T KOG1979|consen 36 IENSLDANSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTSKLTKFED-L------FSLSTYGFRGEALASIS 108 (694)
T ss_pred HhccccCCCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhhhcchhHH-H------HhhhhcCccHHHHhhhh
Confidence 44455555567888886555 5777889999999999863333333343222321 1 122233321 133333
Q ss_pred ecceeEEEeecCCCcceEEE-eCCCCceEEecCCCCCCCCCcEEEEE------------eccchhhcCCHHHHHHHHHHh
Q psy16067 1291 VADKVTVTSKHNDDEQYIWE-SSAGGSFTIKPDNSEPLGRGTKIVLH------------MKEDQAEYIEEKKIKEIVKKH 1357 (1386)
Q Consensus 1291 VadkV~V~Tk~~~~~~~~w~-s~~~~~y~i~~~~~~~~~~GT~I~L~------------Lk~d~~e~l~~~~l~~lv~ky 1357 (1386)
=.-+|+|.||..+++ ..|. +..+|...-.+- +-..+.||.|++. |+...+|| .++-++|.+|
T Consensus 109 hVA~VtV~TK~~~~~-cayrasY~DGkm~~~pK-pcAgk~GT~I~vedLFYN~~~Rrkal~~~~EE~---~ki~dlv~ry 183 (694)
T KOG1979|consen 109 HVAHVTVTTKTAEGK-CAYRASYRDGKMIATPK-PCAGKQGTIITVEDLFYNMPTRRKALRNHAEEY---RKIMDLVGRY 183 (694)
T ss_pred heeEEEEEEeecCce-eeeEEEeeccccccCCC-CccCCCceEEEehHhhccCHHHHHHhcCcHHHH---HHHHHHHHHH
Confidence 345899999998877 4454 666776553332 3345799999973 34444433 5788889998
Q ss_pred cCC
Q psy16067 1358 SQF 1360 (1386)
Q Consensus 1358 s~f 1360 (1386)
+=|
T Consensus 184 AIH 186 (694)
T KOG1979|consen 184 AIH 186 (694)
T ss_pred hee
Confidence 755
No 39
>PLN03237 DNA topoisomerase 2; Provisional
Probab=88.35 E-value=1.2 Score=61.38 Aligned_cols=140 Identities=9% Similarity=0.167 Sum_probs=83.8
Q ss_pred ceeeecCCCCCEEEEEeCCCccCHHHHHhh--------ccceeecchHHHHHHHhcCCccccccccccceeEEEeeccee
Q psy16067 1224 QDPIIPNKEEKTLTIIDSGIGMTKADLVNN--------LGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKV 1295 (1386)
Q Consensus 1224 ~I~I~~d~~~~~L~I~DnGiGMt~~dl~~~--------LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV 1295 (1386)
.|+|+++.+++.|+|+|||-|+..+ ++.. ..|.-..|.+- +.+...---|+-|||.=.+=.++++.
T Consensus 101 ~I~V~I~~~~gsIsV~DnGRGIPV~-iH~~eg~~~pElIft~LhAGgkF-----dd~~yKvSGGlhGVGasvvNaLS~~f 174 (1465)
T PLN03237 101 SLRVVIDVEQNLISVYNNGDGVPVE-IHQEEGVYVPEMIFGHLLTSSNY-----DDNEKKTTGGRNGYGAKLTNIFSTEF 174 (1465)
T ss_pred EEEEEEEcCCCEEEEEecCccccCC-CCCCCCCccceEEEEeeeccccC-----CCCcceeeccccccCccccccccCee
Confidence 6999999999999999999987653 2221 22333444432 11111124599999999999999999
Q ss_pred EEEeecCC-Ccce--EEEeC-CCC-ceEEecCCCCCCCCCcEEEEEeccchhh--cCCHHHHHHHHHHh---cCCC--Cc
Q psy16067 1296 TVTSKHND-DEQY--IWESS-AGG-SFTIKPDNSEPLGRGTKIVLHMKEDQAE--YIEEKKIKEIVKKH---SQFI--GY 1363 (1386)
Q Consensus 1296 ~V~Tk~~~-~~~~--~w~s~-~~~-~y~i~~~~~~~~~~GT~I~L~Lk~d~~e--~l~~~~l~~lv~ky---s~fi--~~ 1363 (1386)
+|+++... +..| .|+.. |.- .-.|.. ....+.||+|+......-.+ -++.+.|..+.++. +.|+ ..
T Consensus 175 ~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~--~~~~~~GT~VtF~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGl 252 (1465)
T PLN03237 175 VIETADGKRQKKYKQVFSNNMGKKSEPVITK--CKKSENWTKVTFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTV 252 (1465)
T ss_pred EEEEEECCCCeEEEEEEeCCCCccCCceecc--CCCCCCceEEEEEECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCc
Confidence 99998332 2334 36531 111 112221 11126999997776543221 24666766554444 4466 47
Q ss_pred ceEEEEee
Q psy16067 1364 PIKLLVEK 1371 (1386)
Q Consensus 1364 PI~l~~~~ 1371 (1386)
-|+++.++
T Consensus 253 kI~LndeR 260 (1465)
T PLN03237 253 KVELNGKR 260 (1465)
T ss_pred EEEEEecC
Confidence 78887665
No 40
>KOG1978|consensus
Probab=87.04 E-value=0.6 Score=59.17 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=65.7
Q ss_pred eeecCCCCCceeeecCC-CCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccce----eEEE
Q psy16067 1215 YFFLFPGFGQDPIIPNK-EEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF----YSAY 1289 (1386)
Q Consensus 1215 ~~~c~~g~G~I~I~~d~-~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF----~S~F 1289 (1386)
+-+...|=..|+|.++. +-..|+|.|||.|++..+... .-.+..|. ++..=+ ++-.-|..|| +|+.
T Consensus 30 ENSiDAGAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~---l~lkh~TS----Ki~~f~--Dl~~l~T~GFRGEALSsL 100 (672)
T KOG1978|consen 30 ENSIDAGATAIDIKVKDYGSDSIEVSDNGSGISATDFEG---LALKHTTS----KIVSFA--DLAVLFTLGFRGEALSSL 100 (672)
T ss_pred hcCcccCCceeeEecCCCCcceEEEecCCCCCCccchhh---hhhhhhhh----cccchh--hhhhhhhhhhHHHHHHhh
Confidence 33444555578888754 446999999999999866553 11222221 111101 1233344444 3444
Q ss_pred eecceeEEEeecC-CCcceEEEeCCCCceEEecCCCCCCCCCcEEEEE
Q psy16067 1290 LVADKVTVTSKHN-DDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLH 1336 (1386)
Q Consensus 1290 mVadkV~V~Tk~~-~~~~~~w~s~~~~~y~i~~~~~~~~~~GT~I~L~ 1336 (1386)
--=-.|.|+|++. +..+..|.-+.+|..+=. ..-..++||+|++.
T Consensus 101 Ca~~dv~I~Trt~~~~vgt~l~~Dh~G~I~~k--~~~ar~~GTTV~v~ 146 (672)
T KOG1978|consen 101 CALGDVMISTRSHSAKVGTRLVYDHDGHIIQK--KPVARGRGTTVMVR 146 (672)
T ss_pred hhccceEEEEeeccCccceeEEEccCCceeee--ccccCCCCCEEEHh
Confidence 3334577888875 455888999888876622 23345899999874
No 41
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=86.87 E-value=0.49 Score=55.70 Aligned_cols=82 Identities=16% Similarity=0.249 Sum_probs=48.2
Q ss_pred Cceeeec--CCCCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeecceeEEEee
Q psy16067 1223 GQDPIIP--NKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVTSK 1300 (1386)
Q Consensus 1223 G~I~I~~--d~~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV~V~Tk 1300 (1386)
|.|.|.. +.+.-.|+|+|||+||+++++..-+...-+..+ --+.+|+|++-|--++++
T Consensus 267 ~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~--------------~~~g~GlGL~i~~~i~~~------ 326 (356)
T PRK10755 267 STITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS--------------RYGGIGLGLSIVSRITQL------ 326 (356)
T ss_pred CcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC--------------CCCCcCHHHHHHHHHHHH------
Confidence 4566655 444457999999999999988765543322110 114578998765433331
Q ss_pred cCCCcceEEEeCCCCceEEecCCCCCCCCCcEEEEEecc
Q psy16067 1301 HNDDEQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKE 1339 (1386)
Q Consensus 1301 ~~~~~~~~w~s~~~~~y~i~~~~~~~~~~GT~I~L~Lk~ 1339 (1386)
+ +|+++++..+ ...||+|++.+..
T Consensus 327 ~------------gg~i~i~s~~---~~~Gt~~~i~~p~ 350 (356)
T PRK10755 327 H------------HGQFFLQNRQ---ERSGTRAWVWLPK 350 (356)
T ss_pred C------------CCEEEEEECC---CCCeEEEEEEecC
Confidence 1 2344554211 1268888888854
No 42
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=86.60 E-value=0.48 Score=44.34 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=40.0
Q ss_pred eeeecCCCCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeeccee
Q psy16067 1225 DPIIPNKEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKV 1295 (1386)
Q Consensus 1225 I~I~~d~~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV 1295 (1386)
|++..+.+.-.+.|.|+|.||+.+.+...+.....+.- .....++.|+|+..+--++++.
T Consensus 29 i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~~g~gl~~~~~~~~~~ 88 (111)
T smart00387 29 VTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-----------RSRKIGGTGLGLSIVKKLVELH 88 (111)
T ss_pred EEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-----------CCCCCCcccccHHHHHHHHHHc
Confidence 44444444557889999999999888876655433210 1134567899998887766664
No 43
>PLN03128 DNA topoisomerase 2; Provisional
Probab=86.59 E-value=2.4 Score=57.91 Aligned_cols=140 Identities=15% Similarity=0.176 Sum_probs=79.8
Q ss_pred ceeeecCCCCCEEEEEeCCCccCHHHHHh--------hccceeecchHHHHHHHhcCCccccccccccceeEEEeeccee
Q psy16067 1224 QDPIIPNKEEKTLTIIDSGIGMTKADLVN--------NLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKV 1295 (1386)
Q Consensus 1224 ~I~I~~d~~~~~L~I~DnGiGMt~~dl~~--------~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV 1295 (1386)
.|.|+++++++.|+|+|||-||..+ ++. -..|.-.+|.+ | +.+.-.---|+-|||.=.+=.++++.
T Consensus 76 ~I~V~i~~~dgsIsV~DnGrGIPv~-ih~~~g~~~~ElIft~LhaGgk-F----dd~~ykvSGGlhGvGasvvNaLS~~f 149 (1135)
T PLN03128 76 SLKVDIDVEQNTISVYNNGKGIPVE-IHKEEGVYVPELIFGHLLTSSN-F----DDNEKKTTGGRNGYGAKLANIFSTEF 149 (1135)
T ss_pred EEEEEEEcCCCeEEEEecCccccCC-CCCCCCCccceEEEEeeccccc-c----CCccceeeccccCCCCeEEEeecCeE
Confidence 7999999999999999999998753 222 11233344444 2 11111124599999999999999999
Q ss_pred EEEeecC-CCcceE--EEeCC-CCc-eEEecCCCCCCCCCcEEEEEeccchhh--cCCHHHHHHH---HHHhcCCC--Cc
Q psy16067 1296 TVTSKHN-DDEQYI--WESSA-GGS-FTIKPDNSEPLGRGTKIVLHMKEDQAE--YIEEKKIKEI---VKKHSQFI--GY 1363 (1386)
Q Consensus 1296 ~V~Tk~~-~~~~~~--w~s~~-~~~-y~i~~~~~~~~~~GT~I~L~Lk~d~~e--~l~~~~l~~l---v~kys~fi--~~ 1363 (1386)
+|+++.. ++..|. |+..- ... -.|.. ......||+|+-.....-.+ -++.+.+..+ ++.-+.|+ ..
T Consensus 150 ~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~--~~~~~~GT~ItF~PD~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~Gl 227 (1135)
T PLN03128 150 TVETADGNRGKKYKQVFTNNMSVKSEPKITS--CKASENWTKITFKPDLAKFNMTRLDEDVVALMSKRVYDIAGCLGKKL 227 (1135)
T ss_pred EEEEEECCCCeEEEEEeCCCcccCCCceecc--CCCCCCceEEEEEECHHHcCCCccChHHHHHHHHHHHHHHHhCCCCc
Confidence 9999833 223333 43210 011 11211 11135899988776543211 1344443333 33345566 36
Q ss_pred ceEEEEee
Q psy16067 1364 PIKLLVEK 1371 (1386)
Q Consensus 1364 PI~l~~~~ 1371 (1386)
-|+++.++
T Consensus 228 kI~Lnder 235 (1135)
T PLN03128 228 KVELNGKK 235 (1135)
T ss_pred EEEEecCC
Confidence 66666554
No 44
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=85.09 E-value=2.7 Score=58.24 Aligned_cols=139 Identities=13% Similarity=0.146 Sum_probs=81.6
Q ss_pred ceeeecCCCCCEEEEEeCCCccCHHHHHh--------hccceeecchHHHHHHHhcCCccccccccccceeEEEeeccee
Q psy16067 1224 QDPIIPNKEEKTLTIIDSGIGMTKADLVN--------NLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKV 1295 (1386)
Q Consensus 1224 ~I~I~~d~~~~~L~I~DnGiGMt~~dl~~--------~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVadkV 1295 (1386)
.|+|+++++.+.|+|+|||-|+..+ ++. ...+.-.+|.+- +.+...---|+-|||.=.+=.++++.
T Consensus 84 ~I~V~i~~d~g~IsV~dnGrGIPv~-~h~~~~~~~pElIft~L~aGgkf-----dd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 84 YIKVTIDEENGEISVYNDGEGIPVQ-IHKEHKIYVPEMIFGHLLTSSNY-----DDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred EEEEEEeccCCeEEEEecCCcccCC-CCCCCCCccceEEEEEeeccccC-----CCCceeeecccccCCccccccccceE
Confidence 7999999999999999999987653 221 112333344332 11111124699999999999999999
Q ss_pred EEEeecCC-Ccce--EEEeCC--CCceEEecCCCCCCCCCcEEEEEeccchhh--cCCHHH---HHHHHHHhcCCCC-cc
Q psy16067 1296 TVTSKHND-DEQY--IWESSA--GGSFTIKPDNSEPLGRGTKIVLHMKEDQAE--YIEEKK---IKEIVKKHSQFIG-YP 1364 (1386)
Q Consensus 1296 ~V~Tk~~~-~~~~--~w~s~~--~~~y~i~~~~~~~~~~GT~I~L~Lk~d~~e--~l~~~~---l~~lv~kys~fi~-~P 1364 (1386)
+|+++... +..| .|+... -..-.|.... ....||+|+......-.. -++.+. |+.-++..+-..+ .-
T Consensus 158 ~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~~~--~~~~GT~VtF~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GLk 235 (1388)
T PTZ00108 158 TVECVDSKSGKKFKMTWTDNMSKKSEPRITSYD--GKKDYTKVTFYPDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKLK 235 (1388)
T ss_pred EEEEEECCCCCEEEEEecCCCcCCCCCccCCCC--CCCCceEEEEEeCHHHcCCCccChHHHHHHHHHHHHHhcCCCCcE
Confidence 99998762 2323 354321 0111232111 115899988777654221 245555 5555555544432 55
Q ss_pred eEEEEe
Q psy16067 1365 IKLLVE 1370 (1386)
Q Consensus 1365 I~l~~~ 1370 (1386)
|+++.+
T Consensus 236 I~lnde 241 (1388)
T PTZ00108 236 VYLNGE 241 (1388)
T ss_pred EEEeCc
Confidence 666654
No 45
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=84.87 E-value=0.7 Score=56.16 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=35.2
Q ss_pred CceeeecCCCC--CEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEE
Q psy16067 1223 GQDPIIPNKEE--KTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAY 1289 (1386)
Q Consensus 1223 G~I~I~~d~~~--~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~F 1289 (1386)
|.|.|.+..++ -.|+|+|||+||+++++.+-+-..-+... ....-.|..|+|++-+-
T Consensus 372 ~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~----------~~~~~~~g~GlGL~iv~ 430 (466)
T PRK10549 372 GSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEG----------SRNRASGGSGLGLAICL 430 (466)
T ss_pred CEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCC----------CcCCCCCCCcHHHHHHH
Confidence 45666554333 46788999999999988766644322110 11123466899987543
No 46
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=84.17 E-value=3.1 Score=53.46 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=79.3
Q ss_pred ceeeecCCCCCEEEEEeCCCccCHHHHHh----------hccceeecchHHHHHHHhcCCccccccccccceeEEEeecc
Q psy16067 1224 QDPIIPNKEEKTLTIIDSGIGMTKADLVN----------NLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAD 1293 (1386)
Q Consensus 1224 ~I~I~~d~~~~~L~I~DnGiGMt~~dl~~----------~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVad 1293 (1386)
.|.|+++ ++.++|+|||-||..+.-.+ -..|.-.+|.+ | + . .-.---|.-|||.=.+=.+++
T Consensus 71 ~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgk-F-d---~-~ykvSGGlhGVG~svvNaLS~ 142 (602)
T PHA02569 71 KIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSN-F-D---D-TNRVTGGMNGVGSSLTNFFSV 142 (602)
T ss_pred EEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEeeccccc-c-C---C-cceeeCCcCCccceeeeccch
Confidence 7999998 78999999999987643211 11244555554 2 1 1 111135999999999989999
Q ss_pred eeEEEeecCCCc-ceEEEeCCCCceEEec-CCCCCCCCCcEEEEEeccchhhc--CC---HHHHHHHHHHhcCCC-Ccce
Q psy16067 1294 KVTVTSKHNDDE-QYIWESSAGGSFTIKP-DNSEPLGRGTKIVLHMKEDQAEY--IE---EKKIKEIVKKHSQFI-GYPI 1365 (1386)
Q Consensus 1294 kV~V~Tk~~~~~-~~~w~s~~~~~y~i~~-~~~~~~~~GT~I~L~Lk~d~~e~--l~---~~~l~~lv~kys~fi-~~PI 1365 (1386)
+.+|+++..+.. ...|+ .|- .+.+ ..+...++||+|+.....+-.+- ++ .+.|.+-++..+-.. ..-|
T Consensus 143 ~~~V~v~~~~~~~~q~f~---~G~-~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~~~~l~~Rl~elA~Ln~Gl~I 218 (602)
T PHA02569 143 LFIGETCDGKNEVTVNCS---NGA-ENISWSTKPGKGKGTSVTFIPDFSHFEVNGLDQQYLDIILDRLQTLAVVFPDIKF 218 (602)
T ss_pred hhheEEEcCCEEEEEEec---CCc-ccCCcccCCCCCCccEEEEEECHHHhCCCccCccHHHHHHHHHHHHhcCCCCCEE
Confidence 999988654322 22233 121 1111 11223468999888776543211 22 355666666664332 3566
Q ss_pred EEEEee
Q psy16067 1366 KLLVEK 1371 (1386)
Q Consensus 1366 ~l~~~~ 1371 (1386)
+++.++
T Consensus 219 ~l~der 224 (602)
T PHA02569 219 TFNGKK 224 (602)
T ss_pred EEEecC
Confidence 666544
No 47
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=83.27 E-value=0.65 Score=61.74 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=24.5
Q ss_pred CceeeecCCCC--CEEEEEeCCCccCHHHHHhhcc
Q psy16067 1223 GQDPIIPNKEE--KTLTIIDSGIGMTKADLVNNLG 1255 (1386)
Q Consensus 1223 G~I~I~~d~~~--~~L~I~DnGiGMt~~dl~~~Lg 1255 (1386)
|.|+|.+..++ -.|+|+|||+||+++++..-+-
T Consensus 532 g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~ 566 (921)
T PRK15347 532 GGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFT 566 (921)
T ss_pred CCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhc
Confidence 56777665443 4788999999999998875553
No 48
>PRK10604 sensor protein RstB; Provisional
Probab=83.00 E-value=0.67 Score=56.57 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=35.9
Q ss_pred CCceeeecC--CCCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEE
Q psy16067 1222 FGQDPIIPN--KEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSA 1288 (1386)
Q Consensus 1222 ~G~I~I~~d--~~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~ 1288 (1386)
-|.|+|.+. .+.-.|+|+|||.||+++++..-+-...+... +...--|.+|+|++-+
T Consensus 336 ~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~----------~~~~~~~g~GLGL~iv 394 (433)
T PRK10604 336 HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDP----------SRDRATGGCGLGLAIV 394 (433)
T ss_pred CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCC----------CCCCCCCCccchHHHH
Confidence 366666654 44457899999999999988866654433210 0111235689998743
No 49
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=80.72 E-value=1.7 Score=52.62 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=22.6
Q ss_pred ceeeecC--CCCCEEEEEeCCCccCHHHHHhhc
Q psy16067 1224 QDPIIPN--KEEKTLTIIDSGIGMTKADLVNNL 1254 (1386)
Q Consensus 1224 ~I~I~~d--~~~~~L~I~DnGiGMt~~dl~~~L 1254 (1386)
.|.|.+. .+.-.|+|+|||.||+++++...+
T Consensus 389 ~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~ 421 (475)
T PRK11100 389 TITLSAEVDGEQVALSVEDQGPGIPDYALPRIF 421 (475)
T ss_pred EEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 4555554 444579999999999998877444
No 50
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=79.93 E-value=1.2 Score=57.96 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=24.3
Q ss_pred CceeeecCC--CCCEEEEEeCCCccCHHHHHhhccc
Q psy16067 1223 GQDPIIPNK--EEKTLTIIDSGIGMTKADLVNNLGT 1256 (1386)
Q Consensus 1223 G~I~I~~d~--~~~~L~I~DnGiGMt~~dl~~~Lgt 1256 (1386)
|.|.|.+.. +.-.|+|+|||.||+++++.+.+..
T Consensus 599 ~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~ 634 (679)
T TIGR02916 599 GRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFK 634 (679)
T ss_pred CcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCC
Confidence 466666653 3447889999999999886655533
No 51
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=79.09 E-value=1.5 Score=53.00 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=24.4
Q ss_pred Cceeeec--CCCCCEEEEEeCCCccCHHHHHhhccc
Q psy16067 1223 GQDPIIP--NKEEKTLTIIDSGIGMTKADLVNNLGT 1256 (1386)
Q Consensus 1223 G~I~I~~--d~~~~~L~I~DnGiGMt~~dl~~~Lgt 1256 (1386)
+.|.|.+ +.+.-.|+|+|||+||+++++...+..
T Consensus 371 ~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~ 406 (461)
T PRK09470 371 TKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRP 406 (461)
T ss_pred CcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCC
Confidence 4455544 444457899999999999988766543
No 52
>PRK09303 adaptive-response sensory kinase; Validated
Probab=74.08 E-value=2.7 Score=50.63 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=34.5
Q ss_pred CceeeecC--CC-CCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeec
Q psy16067 1223 GQDPIIPN--KE-EKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA 1292 (1386)
Q Consensus 1223 G~I~I~~d--~~-~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVa 1292 (1386)
|.|.|... .+ .-.|+|.|||+||+++++..-|-..-+.. . ..-.+-.|+|++-|.-++
T Consensus 292 ~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~-----------~-~~~~~G~GLGL~i~~~iv 352 (380)
T PRK09303 292 GTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLP-----------R-DEGTEGYGIGLSVCRRIV 352 (380)
T ss_pred ceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeCC-----------C-CCCCCcccccHHHHHHHH
Confidence 46777652 22 23688999999999998875553322110 0 011245889987665443
No 53
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=73.31 E-value=1.6 Score=58.10 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=24.5
Q ss_pred CceeeecCCCC--CEEEEEeCCCccCHHHHHhhc
Q psy16067 1223 GQDPIIPNKEE--KTLTIIDSGIGMTKADLVNNL 1254 (1386)
Q Consensus 1223 G~I~I~~d~~~--~~L~I~DnGiGMt~~dl~~~L 1254 (1386)
|.|.|.+..++ -.|.|.|||+||+++++...+
T Consensus 580 g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 613 (914)
T PRK11466 580 GSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIF 613 (914)
T ss_pred CeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHh
Confidence 66777665443 468899999999999887655
No 54
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=72.64 E-value=3.8 Score=37.53 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=40.4
Q ss_pred ceeeecCCCC--CEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeecc----eeEE
Q psy16067 1224 QDPIIPNKEE--KTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAD----KVTV 1297 (1386)
Q Consensus 1224 ~I~I~~d~~~--~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVad----kV~V 1297 (1386)
.|.|....++ -.+.|.|+|.||+...+...+...+.. .....-+.+|+|+..+-.+++ ++.+
T Consensus 22 ~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~------------~~~~~~~~~g~gl~~~~~~~~~~~g~~~~ 89 (103)
T cd00075 22 RITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG------------SRSRKGGGTGLGLSIVKKLVELHGGRIEV 89 (103)
T ss_pred eEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC------------CCCCCCCccccCHHHHHHHHHHcCCEEEE
Confidence 4555554443 468889999999999887665443111 111234678899988777776 4555
Q ss_pred Ee
Q psy16067 1298 TS 1299 (1386)
Q Consensus 1298 ~T 1299 (1386)
.+
T Consensus 90 ~~ 91 (103)
T cd00075 90 ES 91 (103)
T ss_pred Ee
Confidence 43
No 55
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=72.29 E-value=3.4 Score=49.87 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=24.8
Q ss_pred CceeeecCCCC--CEEEEEeCCCccCHHHHHhhccc
Q psy16067 1223 GQDPIIPNKEE--KTLTIIDSGIGMTKADLVNNLGT 1256 (1386)
Q Consensus 1223 G~I~I~~d~~~--~~L~I~DnGiGMt~~dl~~~Lgt 1256 (1386)
|.|.|.+..++ -.|+|.|||.||+++++...+-.
T Consensus 373 ~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~ 408 (457)
T TIGR01386 373 GTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDR 408 (457)
T ss_pred ceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccc
Confidence 45666664443 47899999999999888765544
No 56
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=72.07 E-value=6.3 Score=53.14 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=24.8
Q ss_pred CCceeeecCCC-----CCEEEEEeCCCccCHHHHHhhccc
Q psy16067 1222 FGQDPIIPNKE-----EKTLTIIDSGIGMTKADLVNNLGT 1256 (1386)
Q Consensus 1222 ~G~I~I~~d~~-----~~~L~I~DnGiGMt~~dl~~~Lgt 1256 (1386)
.|.|.|.+... .-.|+|.|||+||+++++.+-+-.
T Consensus 583 ~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFeP 622 (894)
T PRK10618 583 YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFP 622 (894)
T ss_pred CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCc
Confidence 36677666422 237888999999999988765543
No 57
>PRK10815 sensor protein PhoQ; Provisional
Probab=70.04 E-value=2.9 Score=52.18 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=21.4
Q ss_pred eeeecCCCCCEEEEEeCCCccCHHHHHhhc
Q psy16067 1225 DPIIPNKEEKTLTIIDSGIGMTKADLVNNL 1254 (1386)
Q Consensus 1225 I~I~~d~~~~~L~I~DnGiGMt~~dl~~~L 1254 (1386)
|.+..+.+.-.|+|.|+|.||+++++..-+
T Consensus 400 I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF 429 (485)
T PRK10815 400 ISARQTDEHLHIVVEDDGPGIPESKRELIF 429 (485)
T ss_pred EEEEEeCCEEEEEEEECCCCcCHHHHHHHh
Confidence 444434444478999999999999887554
No 58
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=68.85 E-value=3.7 Score=55.08 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=23.9
Q ss_pred Cceeeec--CCCC-CEEEEEeCCCccCHHHHHhhc
Q psy16067 1223 GQDPIIP--NKEE-KTLTIIDSGIGMTKADLVNNL 1254 (1386)
Q Consensus 1223 G~I~I~~--d~~~-~~L~I~DnGiGMt~~dl~~~L 1254 (1386)
|.|.|.+ ..+. -.|+|.|+|+||+++++..-|
T Consensus 598 g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 632 (968)
T TIGR02956 598 GSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLF 632 (968)
T ss_pred CeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHH
Confidence 5666655 4444 569999999999999877555
No 59
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=68.20 E-value=4.8 Score=48.64 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=24.9
Q ss_pred CceeeecC--CCCCEEEEEeCCCccCHHHHHhhccce
Q psy16067 1223 GQDPIIPN--KEEKTLTIIDSGIGMTKADLVNNLGTI 1257 (1386)
Q Consensus 1223 G~I~I~~d--~~~~~L~I~DnGiGMt~~dl~~~LgtI 1257 (1386)
+.|.|... .+.-.|+|+|||+||+++++..-|-.+
T Consensus 411 ~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f 447 (494)
T TIGR02938 411 RELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPF 447 (494)
T ss_pred ceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCC
Confidence 34666553 444579999999999998877666443
No 60
>PRK10337 sensor protein QseC; Provisional
Probab=67.53 E-value=3.5 Score=50.02 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=23.9
Q ss_pred CceeeecCCCCCEEEEEeCCCccCHHHHHhhccc
Q psy16067 1223 GQDPIIPNKEEKTLTIIDSGIGMTKADLVNNLGT 1256 (1386)
Q Consensus 1223 G~I~I~~d~~~~~L~I~DnGiGMt~~dl~~~Lgt 1256 (1386)
|.|+|..... .|+|.|||.||+++++...+-.
T Consensus 372 ~~i~i~~~~~--~i~i~D~G~Gi~~~~~~~if~~ 403 (449)
T PRK10337 372 SVVDVTLNAR--NFTVRDNGPGVTPEALARIGER 403 (449)
T ss_pred CeEEEEEEee--EEEEEECCCCCCHHHHHHhccc
Confidence 3566665433 7999999999999988766543
No 61
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=67.15 E-value=2.9 Score=53.29 Aligned_cols=66 Identities=48% Similarity=0.830 Sum_probs=57.5
Q ss_pred chhhhhccCCCCcccCCCCCCCCCCcceeeehhhhhhHHHHHHHHHHHHHhhccccccchhhhhhHH
Q psy16067 444 EQYIWESSAGGSFTIKPDNSEPLGRGTKIVLHMKEDQAEYIEEKKIKEIVKKHSQFIGYPIKLLVEK 510 (1386)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1386)
+++.|.+...+.+.|.+...++- .||.|+|+++..+.+.+++..++.|++|.+++|.+||.+-..+
T Consensus 147 ~~~~W~S~g~g~ytv~~~~~~~~-~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~ 212 (623)
T COG0326 147 EAYHWESDGEGEYTVEDIDKEPR-RGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEK 212 (623)
T ss_pred cceEEEEcCCCceEEeeccCCCC-CCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeec
Confidence 45689999988999987776643 5899999999999999999999999999999999999877755
No 62
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=66.12 E-value=3.5 Score=55.68 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=23.8
Q ss_pred CceeeecCCCC--CEEEEEeCCCccCHHHHHhhcc
Q psy16067 1223 GQDPIIPNKEE--KTLTIIDSGIGMTKADLVNNLG 1255 (1386)
Q Consensus 1223 G~I~I~~d~~~--~~L~I~DnGiGMt~~dl~~~Lg 1255 (1386)
|.|.|.+..++ -.|+|.|||+||+++++..-+-
T Consensus 581 G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFe 615 (924)
T PRK10841 581 GCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFD 615 (924)
T ss_pred CcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhc
Confidence 56666554333 4688899999999998876553
No 63
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=64.38 E-value=4.7 Score=53.69 Aligned_cols=48 Identities=17% Similarity=0.280 Sum_probs=29.0
Q ss_pred EEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeec
Q psy16067 1235 TLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA 1292 (1386)
Q Consensus 1235 ~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVa 1292 (1386)
.|+|.|||+||+++++..-+-..-+.. .+...-.|-.|+|++-|--++
T Consensus 446 ~i~V~D~G~Gi~~~~~~~if~~f~~~~----------~~~~~~~~g~GLGL~i~~~i~ 493 (919)
T PRK11107 446 EVQIRDTGIGISERQQSQLFQAFRQAD----------ASISRRHGGTGLGLVITQKLV 493 (919)
T ss_pred EEEEEEeCCCcCHHHHHHHhhhhccCC----------CCCCCCCCCcchhHHHHHHHH
Confidence 588999999999998875553221110 001112356889987655443
No 64
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=64.07 E-value=3.9 Score=53.77 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=22.6
Q ss_pred CceeeecCC---CCCEEEEEeCCCccCHHHHHhhc
Q psy16067 1223 GQDPIIPNK---EEKTLTIIDSGIGMTKADLVNNL 1254 (1386)
Q Consensus 1223 G~I~I~~d~---~~~~L~I~DnGiGMt~~dl~~~L 1254 (1386)
|.|.|.+.. +.-.|+|.|||+||+++++..-|
T Consensus 417 g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF 451 (779)
T PRK11091 417 GGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIF 451 (779)
T ss_pred CcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHH
Confidence 555555432 23478999999999998876544
No 65
>KOG1977|consensus
Probab=60.95 E-value=3.5 Score=52.39 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=28.2
Q ss_pred CCCCCceeeecCCCCCEEEEEeCCCccCHHHHH
Q psy16067 1219 FPGFGQDPIIPNKEEKTLTIIDSGIGMTKADLV 1251 (1386)
Q Consensus 1219 ~~g~G~I~I~~d~~~~~L~I~DnGiGMt~~dl~ 1251 (1386)
..+-..|.|.++-....+.|.|+|+||+++||.
T Consensus 35 DA~At~V~v~V~~~t~sv~ViDdG~G~~rdDl~ 67 (1142)
T KOG1977|consen 35 DAEATCVAVRVNMETFSVQVIDDGFGMGRDDLE 67 (1142)
T ss_pred ccCceEEEEEecCceeEEEEEecCCCccHHHHH
Confidence 334456888889999999999999999999997
No 66
>KOG1712|consensus
Probab=53.35 E-value=3.3 Score=44.36 Aligned_cols=58 Identities=26% Similarity=0.382 Sum_probs=44.2
Q ss_pred CCcchhccc-CCHHHHHHHH----HhhCC-C-CcccccccccccccCCCcccChhHHHHHHHHHHhhhc
Q psy16067 313 RSFGDLNDF-MDSEQVTRLS----QVYRG-V-NDIDYYIGGLLESVIRGTLSSPSFRCVFAEAFYRYKY 374 (1386)
Q Consensus 313 ~sf~dl~~~-~~~~~~~~l~----~lY~~-~-~dvDL~~G~l~E~~~~G~~~gpT~~cii~~qf~~l~~ 374 (1386)
--|+|+..+ .||...+.+. +.|.+ . .+||+.+|.=+ .|.++||+++-.+.--|+-+|+
T Consensus 26 I~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEa----RGFLFGP~iAlalG~~fVPiRK 90 (183)
T KOG1712|consen 26 IMFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEA----RGFLFGPSIALALGAGFVPIRK 90 (183)
T ss_pred eehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeee----cceecCcHHHHHhCCCeeeccc
Confidence 468998876 6887655554 44533 2 45999999744 7999999999999999988875
No 67
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=53.18 E-value=10 Score=46.21 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=23.6
Q ss_pred CceeeecC--CCCCEEEEEeCCCccCHHHHHhhcc
Q psy16067 1223 GQDPIIPN--KEEKTLTIIDSGIGMTKADLVNNLG 1255 (1386)
Q Consensus 1223 G~I~I~~d--~~~~~L~I~DnGiGMt~~dl~~~Lg 1255 (1386)
|.|.|... .+.-.|+|.|||+||+++++..-+-
T Consensus 337 ~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~ 371 (430)
T PRK11006 337 THITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTE 371 (430)
T ss_pred CeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhcc
Confidence 35666553 3445799999999999988875543
No 68
>PRK14083 HSP90 family protein; Provisional
Probab=50.58 E-value=8.1 Score=49.79 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=29.7
Q ss_pred CHHHHHHhhhcCCCchhHHHHHHHHhhccccCCCCCCC--Ccc
Q psy16067 1 IVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLE--DPQ 41 (1386)
Q Consensus 1 i~~~l~~~~~~d~~dk~vkdl~~ll~~tall~sgf~l~--~~~ 41 (1386)
||+.|.+. .+++.+++++.+||++|+|.+|+.|+ +|+
T Consensus 541 li~~l~~~----~d~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~ 579 (601)
T PRK14083 541 LVRRLATL----GDPKLLSRAVEALYVQALLLGHRPLRPAEMA 579 (601)
T ss_pred HHHHHHhc----cChHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 35566442 46667999999999999999999998 766
No 69
>PRK10490 sensor protein KdpD; Provisional
Probab=48.90 E-value=12 Score=50.47 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=24.6
Q ss_pred CceeeecCCCC--CEEEEEeCCCccCHHHHHhhccc
Q psy16067 1223 GQDPIIPNKEE--KTLTIIDSGIGMTKADLVNNLGT 1256 (1386)
Q Consensus 1223 G~I~I~~d~~~--~~L~I~DnGiGMt~~dl~~~Lgt 1256 (1386)
+.|.|....++ -.|+|.|||.||+++++..-+-.
T Consensus 798 ~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFep 833 (895)
T PRK10490 798 AEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDK 833 (895)
T ss_pred CeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCC
Confidence 46777665443 46889999999999887655543
No 70
>PRK13557 histidine kinase; Provisional
Probab=47.97 E-value=13 Score=45.98 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=17.4
Q ss_pred EEEEEeCCCccCHHHHHhhcc
Q psy16067 1235 TLTIIDSGIGMTKADLVNNLG 1255 (1386)
Q Consensus 1235 ~L~I~DnGiGMt~~dl~~~Lg 1255 (1386)
+|+|.|||+||+++++..-|.
T Consensus 326 ~i~v~D~G~Gi~~~~~~~if~ 346 (540)
T PRK13557 326 SIAVTDTGSGMPPEILARVMD 346 (540)
T ss_pred EEEEEcCCCCCCHHHHHhccC
Confidence 689999999999988775543
No 71
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=46.31 E-value=25 Score=46.94 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.0
Q ss_pred EEEEEeCCCccCHHHHHhhc
Q psy16067 1235 TLTIIDSGIGMTKADLVNNL 1254 (1386)
Q Consensus 1235 ~L~I~DnGiGMt~~dl~~~L 1254 (1386)
.|.|+|||+||+++++..-+
T Consensus 609 ~i~V~D~G~GI~~e~~~~iF 628 (828)
T PRK13837 609 LLRVSDTGAGIDEAVLPHIF 628 (828)
T ss_pred EEEEEECCCCCCHHHHHHhh
Confidence 68999999999998886544
No 72
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=44.86 E-value=18 Score=43.70 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=28.1
Q ss_pred CCCCCceeeecCCCCC--EEEEEeCCCccCHHHHHhhccc
Q psy16067 1219 FPGFGQDPIIPNKEEK--TLTIIDSGIGMTKADLVNNLGT 1256 (1386)
Q Consensus 1219 ~~g~G~I~I~~d~~~~--~L~I~DnGiGMt~~dl~~~Lgt 1256 (1386)
+++-|.|+|....++. .|+|.|+|.||+++++...+-.
T Consensus 345 k~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~ 384 (435)
T PRK09467 345 RYGNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQP 384 (435)
T ss_pred HhCCCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCC
Confidence 3345778887755443 6899999999999988766544
No 73
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=42.26 E-value=15 Score=50.98 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=17.2
Q ss_pred EEEEEeCCCccCHHHHHhhcc
Q psy16067 1235 TLTIIDSGIGMTKADLVNNLG 1255 (1386)
Q Consensus 1235 ~L~I~DnGiGMt~~dl~~~Lg 1255 (1386)
.|+|.|||+||+++++..-+-
T Consensus 866 ~i~V~D~G~Gi~~~~~~~iF~ 886 (1197)
T PRK09959 866 KMTIMDSGSGLSQEEQQQLFK 886 (1197)
T ss_pred EEEEEEcCCCCCHHHHHHhhc
Confidence 578999999999998875543
No 74
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=38.71 E-value=20 Score=44.81 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=24.0
Q ss_pred CceeeecCCCC--CEEEEEeCCCccCHHHHHhhcc
Q psy16067 1223 GQDPIIPNKEE--KTLTIIDSGIGMTKADLVNNLG 1255 (1386)
Q Consensus 1223 G~I~I~~d~~~--~~L~I~DnGiGMt~~dl~~~Lg 1255 (1386)
+.|.|....++ -.|+|+|||.||+++++..-+-
T Consensus 456 ~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~ 490 (545)
T PRK15053 456 KIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFE 490 (545)
T ss_pred ceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhC
Confidence 45776665444 4688999999999988765543
No 75
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=36.63 E-value=16 Score=41.36 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=20.6
Q ss_pred CCceeeecC--CCC--CEEEEEeCCCccCHH
Q psy16067 1222 FGQDPIIPN--KEE--KTLTIIDSGIGMTKA 1248 (1386)
Q Consensus 1222 ~G~I~I~~d--~~~--~~L~I~DnGiGMt~~ 1248 (1386)
.|+|+|... .+. ..++|+|||.|+..+
T Consensus 144 ~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 144 GGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred CCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 388887765 333 489999999999874
No 76
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=36.48 E-value=26 Score=43.50 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=25.0
Q ss_pred Cceeeec--CCCC-CEEEEEeCCCccCHHHHHhhccce
Q psy16067 1223 GQDPIIP--NKEE-KTLTIIDSGIGMTKADLVNNLGTI 1257 (1386)
Q Consensus 1223 G~I~I~~--d~~~-~~L~I~DnGiGMt~~dl~~~LgtI 1257 (1386)
|.|+|.. +.+. -.|+|+|||+||+.+++...+...
T Consensus 520 ~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~ 557 (607)
T PRK11360 520 GKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPF 557 (607)
T ss_pred CeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCc
Confidence 4566655 3344 689999999999999887655443
No 77
>PRK13560 hypothetical protein; Provisional
Probab=35.56 E-value=21 Score=46.51 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=25.5
Q ss_pred ccceeeecCCCC--CceeeecCCC-C--CEEEEEeCCCccCHH
Q psy16067 1211 ITNVYFFLFPGF--GQDPIIPNKE-E--KTLTIIDSGIGMTKA 1248 (1386)
Q Consensus 1211 ~~~~~~~c~~g~--G~I~I~~d~~-~--~~L~I~DnGiGMt~~ 1248 (1386)
|+|--++..++- |.|+|..... + -.|+|+|||+||+.+
T Consensus 720 l~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 720 LSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 344444444443 7788877544 3 378999999999974
No 78
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=34.77 E-value=34 Score=38.95 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=25.2
Q ss_pred CceeeecCCC--CCEEEEEeCCCccCHHHHHhhccce
Q psy16067 1223 GQDPIIPNKE--EKTLTIIDSGIGMTKADLVNNLGTI 1257 (1386)
Q Consensus 1223 G~I~I~~d~~--~~~L~I~DnGiGMt~~dl~~~LgtI 1257 (1386)
+.|.|.+... .-.|+|.|||.||+++++...+...
T Consensus 249 ~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~ 285 (333)
T TIGR02966 249 GTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERF 285 (333)
T ss_pred CeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCc
Confidence 5677766443 3468999999999999887655443
No 79
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=34.24 E-value=28 Score=35.47 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=16.9
Q ss_pred CceeeecCC--CCCEEEEEeCCCccC
Q psy16067 1223 GQDPIIPNK--EEKTLTIIDSGIGMT 1246 (1386)
Q Consensus 1223 G~I~I~~d~--~~~~L~I~DnGiGMt 1246 (1386)
|.|.|.... +.-.++|.|+|.||+
T Consensus 62 ~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 62 GVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred cEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 356665543 334688899999997
No 80
>PRK03660 anti-sigma F factor; Provisional
Probab=33.82 E-value=31 Score=35.47 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=17.1
Q ss_pred CceeeecC--CCCCEEEEEeCCCccCH
Q psy16067 1223 GQDPIIPN--KEEKTLTIIDSGIGMTK 1247 (1386)
Q Consensus 1223 G~I~I~~d--~~~~~L~I~DnGiGMt~ 1247 (1386)
+.|.|... .+.-.++|.|+|.||+.
T Consensus 62 ~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 62 GVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred CEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 34555544 33346889999999975
No 81
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=33.51 E-value=33 Score=38.30 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=23.2
Q ss_pred CCceeeecCCCC--CEEEEEeCCCccCHHHHH
Q psy16067 1222 FGQDPIIPNKEE--KTLTIIDSGIGMTKADLV 1251 (1386)
Q Consensus 1222 ~G~I~I~~d~~~--~~L~I~DnGiGMt~~dl~ 1251 (1386)
-|.|.|.....+ -.|.|.|||.||+++++.
T Consensus 246 ~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~ 277 (336)
T COG0642 246 GGEITISVRQDDEQVTISVEDTGPGIPEEELE 277 (336)
T ss_pred CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHH
Confidence 456777765554 689999999999998844
No 82
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=30.57 E-value=27 Score=46.10 Aligned_cols=103 Identities=18% Similarity=0.325 Sum_probs=59.9
Q ss_pred CceeeecCCCCC--EEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhc--CCccccccccccceeEEEeecceeEEE
Q psy16067 1223 GQDPIIPNKEEK--TLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQA--GADISMIGQFGVGFYSAYLVADKVTVT 1298 (1386)
Q Consensus 1223 G~I~I~~d~~~~--~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~--~~~~~~IGqFGIGF~S~FmVadkV~V~ 1298 (1386)
|.|.|..-..++ .|+|+|.|-|++.+-|...--. .| ++..-.. -++..+ +-+=|-..|.-|++|+=+
T Consensus 464 G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiE---rG---li~~~~a~~lSd~Ei---~~LIF~PGFSTa~~Vtdv 534 (716)
T COG0643 464 GTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIE---RG---LITEEEAETLSDEEI---LNLIFAPGFSTAEQVTDV 534 (716)
T ss_pred ceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHH---cC---CCChHHhccCCHHHH---HHHHhcCCCCcchhhhcc
Confidence 788888865544 7788999999999877643211 01 1100010 011100 123377789999999888
Q ss_pred eecC-CCcceEEE-eCCCCceEEecCCCCCCCCCcEEEEEec
Q psy16067 1299 SKHN-DDEQYIWE-SSAGGSFTIKPDNSEPLGRGTKIVLHMK 1338 (1386)
Q Consensus 1299 Tk~~-~~~~~~w~-s~~~~~y~i~~~~~~~~~~GT~I~L~Lk 1338 (1386)
|=+. +=+-++-. .+=+|+-+|+. ..+.||+++|+|-
T Consensus 535 SGRGVGMDVVk~~I~~LgG~I~V~S----~~G~GT~Fti~LP 572 (716)
T COG0643 535 SGRGVGMDVVKTNIEQLGGSISVSS----EPGKGTTFTIRLP 572 (716)
T ss_pred cCCccCHHHHHHHHHHcCCEEEEEe----cCCCCeEEEEecC
Confidence 7553 21111111 22357777774 3479999999884
No 83
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=25.44 E-value=1.4e+02 Score=37.27 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=21.5
Q ss_pred CceeeecCCCC--CEEEEEeCCCccCHHHHHh
Q psy16067 1223 GQDPIIPNKEE--KTLTIIDSGIGMTKADLVN 1252 (1386)
Q Consensus 1223 G~I~I~~d~~~--~~L~I~DnGiGMt~~dl~~ 1252 (1386)
|.|.|..-.++ -.+.|.|||+||++.-+..
T Consensus 374 ~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 374 GSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred CEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 56777665444 3677889999999965553
No 84
>PRK10364 sensor protein ZraS; Provisional
Probab=21.93 E-value=74 Score=39.10 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=23.0
Q ss_pred ceeeec--CCCCCEEEEEeCCCccCHHHHHhhcc
Q psy16067 1224 QDPIIP--NKEEKTLTIIDSGIGMTKADLVNNLG 1255 (1386)
Q Consensus 1224 ~I~I~~--d~~~~~L~I~DnGiGMt~~dl~~~Lg 1255 (1386)
.|.|.+ +.+.-.|+|+|||.||+++++..-+.
T Consensus 369 ~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~ 402 (457)
T PRK10364 369 VISVTASESGAGVKISVTDSGKGIAADQLEAIFT 402 (457)
T ss_pred eEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhC
Confidence 355544 44445899999999999988775543
No 85
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=20.69 E-value=79 Score=41.77 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=36.8
Q ss_pred CceeeecCCCC--CEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEeecc
Q psy16067 1223 GQDPIIPNKEE--KTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAD 1293 (1386)
Q Consensus 1223 G~I~I~~d~~~--~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmVad 1293 (1386)
|.|.|.+..++ -.|+|.|||.||+++++..-+-..-+.... ...--+..|+|++-|-.+++
T Consensus 617 ~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~----------~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 617 GLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQ----------GAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred CeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCC----------CCCCCCCccHHHHHHHHHHH
Confidence 45666654443 468999999999999887655443221110 00112358999887654443
No 86
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=20.46 E-value=82 Score=40.76 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=38.0
Q ss_pred CCCCceeeecC--CCCCEEEEEeCCCccCHHHHHhhccceeecchHHHHHHHhcCCccccccccccceeEEEee
Q psy16067 1220 PGFGQDPIIPN--KEEKTLTIIDSGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV 1291 (1386)
Q Consensus 1220 ~g~G~I~I~~d--~~~~~L~I~DnGiGMt~~dl~~~LgtIa~Sgtk~f~e~~~~~~~~~~IGqFGIGF~S~FmV 1291 (1386)
++-..|.|..+ .+.=++.|.|||+|++.+-+.+-|.-+-+-++. ...-| -|+|.+-|=-+
T Consensus 654 ~e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~-----------~~y~g-tG~GL~I~kkI 715 (750)
T COG4251 654 PENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSR-----------DEYLG-TGLGLAICKKI 715 (750)
T ss_pred CCCCceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcCch-----------hhhcC-CCccHHHHHHH
Confidence 33457888765 555699999999999998666555444332222 23444 77887655333
Done!